BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036442
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 55/63 (87%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI FSMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 76 PGK 78
PG+
Sbjct: 65 PGE 67
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/63 (77%), Positives = 55/63 (87%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SVKDRI FSMI DAE+KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 76 PGK 78
PG+
Sbjct: 63 PGE 65
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 54/63 (85%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I KD T+LIGNTP+VYLNNV +GCV R+AAKLEMMEPC SV DRI FSMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 76 PGK 78
PG+
Sbjct: 65 PGE 67
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 53/63 (84%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I + +QLIG TPMVYLN++ GCVA IAAKLE+MEPCCSVKDRI +SM+ DAE+KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 76 PGK 78
PGK
Sbjct: 173 PGK 175
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In
Soybean
Length = 344
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 49/63 (77%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
IKK +QLIG TP+VYLN V +GC A +A K EMM+P S+KDR A++MI DAEEK LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 76 PGK 78
PGK
Sbjct: 85 PGK 87
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
IKK +QLIG TP+VYLN V +GC A +A K EMM+P S+ DR A++MI DAEEK LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 76 PGK 78
PGK
Sbjct: 85 PGK 87
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 42/62 (67%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SVKDRI +M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 75 TP 76
P
Sbjct: 65 KP 66
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide
Dfsi
Length = 313
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
+I +D TQLIG TP+V L V DG VA I AKLE P SV DRI +M++ AE+ GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 75 TP 76
P
Sbjct: 65 KP 66
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 12 HKRAIKKDATQLIGNTPMVYLNNV--VDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69
H++ I + ++IG TP+V LNN+ DG + AK E + P SVKDRI + M++DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 70 EKGLITPG 77
E+GL+ PG
Sbjct: 106 EQGLLKPG 113
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 39/61 (63%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I ++ TQLIG TP+V L V DG A + AKLE P S+KDRI +MI AE+ GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 76 P 76
P
Sbjct: 67 P 67
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I ++ QLIG TP+V L V DG A + AKLE P S+KDRI +MI AE+ GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 76 P 76
P
Sbjct: 67 P 67
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
T+LIG+TP V LN +VD A + KLE M P SVKDRIA +MI+ AE+ G + PG
Sbjct: 9 TELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPG 65
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 24 IGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAEE+G++ PG
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPG 60
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 MVLEASMEDNYHK-RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDR 59
+ + M + K R + + QLIG TP +YLN + + A++ K+E P SVKDR
Sbjct: 16 LYFQGHMAAPFDKSRNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDR 74
Query: 60 IAFSMIKDAEEKGLITPGK 78
+ F++ AE++G + PGK
Sbjct: 75 LGFAIYDKAEKEGKLIPGK 93
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I +D + IG+TP+V LN + +G RI AK+E P SVK RI +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 76 PG 77
PG
Sbjct: 60 PG 61
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 34/56 (60%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
Q IGNTP+V L + + I KLE P SVKDR A SMI +AE++G I PG
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG 61
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75
I +D + IG+TP+V LN + +G RI AK+E P SV RI +MI DAE++G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 76 PG 77
PG
Sbjct: 60 PG 61
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
Q IGNTP+V L + + + KLE P SVKDR A SMI +AE++G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG 61
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPGK 78
QLIG TP +YLN + + A++ K+E P SV DR+ F++ AE++G + PGK
Sbjct: 17 QLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLIPGK 72
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm,
The Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm,
The Cysteine Synthase B
Length = 323
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 75 TPG 77
PG
Sbjct: 69 RPG 71
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 75 TPG 77
PG
Sbjct: 71 RPG 73
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
Q IGNTP+V L + + + KLE P SV DR A SMI +AE++G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPG 61
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino
Acid Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino
Acid Into Proteins As Biophysical Probe
Length = 291
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
+LIG+TP+V L D +RI KLE P SVKDR A MI DAE++GL+ G
Sbjct: 4 RLIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 55
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
Q IGNTP+V L + + + KLE P SV DR A SMI +AE++G I PG
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPG 61
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 16 IKKDATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73
I D + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 74 ITPG 77
+ PG
Sbjct: 158 LKPG 161
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase
(Tm0665) From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77
+LIG+TP+V L D +RI KLE P SVKDR A MI DAE++GL+ G
Sbjct: 16 RLIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 67
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 5 ASMEDNYHKRAIKK-----DATQLIGNTPMVYLNNVVD--GCVARIAAKLEMMEPCCSVK 57
AS ++H K D + IG+TPMV +N + G + AK E SVK
Sbjct: 17 ASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVK 76
Query: 58 DRIAFSMIKDAEEKGLITPG 77
DRI+ MI+DAE G + PG
Sbjct: 77 DRISLRMIEDAERDGTLKPG 96
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From
Mycobacterium Tuberculosis An O-Phosphoserine Dependent
Cysteine Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From
Mycobacterium Tuberculosis An O-Phosphoserine Dependent
Cysteine Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 22 QLIGNTPMVYLNNVV-------DGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
Q +GNTP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 75 TPG 77
PG
Sbjct: 72 RPG 74
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIAFSMIKDA 68
++ I + + IG TP+V L+ V + RI KLE P SVKDR+ F+++ A
Sbjct: 9 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 68
Query: 69 EEKGLITPG 77
+ G + PG
Sbjct: 69 IKDGRLKPG 77
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 13 KRAIKKDATQLIGNTPMVYLNNVVDGCV----ARIAAKLEMMEPCCSVKDRIAFSMIKDA 68
++ I + + IG TP+V L+ V + RI KLE P SVKDR+ F+++ A
Sbjct: 10 RKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQA 69
Query: 69 EEKGLITPG 77
+ G + PG
Sbjct: 70 IKDGRLKPG 78
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex
With Peptide Mneni
Length = 316
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74
AI D + IGNTP+V L + G + K+E P SV RI +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 75 TPGK 78
T GK
Sbjct: 60 TKGK 63
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine
Synthase
Length = 360
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72
T L G TP++ N+ I K+E + P S KDR + DA G
Sbjct: 33 TLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHG 84
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia
Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia
Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia
Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia
Solanacearum
Length = 352
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 1 MVLEASMEDNYHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDR 59
M L+ ++ D+Y K D L+ + + NN V G V ++AA++ +E +++R
Sbjct: 1 MSLKIAVLDDYQDAVRKLDCFSLLQDHEVKVFNNTVKG-VGQLAARVADVEALVLIRER 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,092,698
Number of Sequences: 62578
Number of extensions: 60149
Number of successful extensions: 143
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 33
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)