Query 036442
Match_columns 78
No_of_seqs 101 out of 1080
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 99.8 2.1E-20 4.6E-25 137.5 6.1 62 17-78 2-63 (300)
2 PRK11761 cysM cysteine synthas 99.8 1.1E-18 2.4E-23 126.5 6.6 63 15-77 1-63 (296)
3 PLN03013 cysteine synthase 99.8 1.9E-18 4.2E-23 131.9 7.1 62 16-77 113-174 (429)
4 PLN02565 cysteine synthase 99.7 2.5E-18 5.4E-23 126.2 7.0 62 16-77 5-66 (322)
5 PLN02556 cysteine synthase/L-3 99.7 4.8E-18 1E-22 127.0 7.1 62 16-77 49-110 (368)
6 TIGR01138 cysM cysteine syntha 99.7 9.7E-18 2.1E-22 121.1 7.0 59 20-78 2-60 (290)
7 PLN02356 phosphateglycerate ki 99.7 1.1E-17 2.3E-22 127.6 7.3 64 14-77 41-104 (423)
8 KOG1252 Cystathionine beta-syn 99.7 1.2E-17 2.6E-22 124.9 6.8 68 11-78 37-104 (362)
9 PRK10717 cysteine synthase A; 99.7 1.6E-17 3.4E-22 121.3 7.1 62 16-77 3-64 (330)
10 PLN00011 cysteine synthase 99.7 1.5E-17 3.3E-22 121.6 6.7 62 16-77 7-68 (323)
11 TIGR01137 cysta_beta cystathio 99.7 2.7E-17 5.8E-22 123.4 6.5 62 17-78 2-63 (454)
12 KOG1481 Cysteine synthase [Ami 99.7 1.1E-17 2.4E-22 124.0 4.0 64 14-77 37-100 (391)
13 TIGR01136 cysKM cysteine synth 99.7 5.3E-17 1.2E-21 117.0 6.3 57 21-77 2-58 (299)
14 TIGR01139 cysK cysteine syntha 99.7 1.1E-16 2.3E-21 115.3 6.5 56 21-77 2-57 (298)
15 PRK06110 hypothetical protein; 99.6 1.8E-16 4E-21 115.6 4.6 60 18-77 13-72 (322)
16 cd06447 D-Ser-dehyd D-Serine d 99.6 1.6E-16 3.4E-21 120.4 4.1 61 18-78 42-118 (404)
17 PRK06608 threonine dehydratase 99.6 2.8E-16 6.2E-21 116.0 4.8 58 18-75 15-72 (338)
18 PRK07476 eutB threonine dehydr 99.6 3.1E-16 6.6E-21 114.5 4.8 57 17-73 10-66 (322)
19 PLN02970 serine racemase 99.6 5.2E-16 1.1E-20 113.7 4.8 56 18-73 19-74 (328)
20 PRK06381 threonine synthase; V 99.6 9.2E-16 2E-20 111.3 4.9 53 21-73 10-63 (319)
21 PRK06721 threonine synthase; R 99.6 1.3E-15 2.8E-20 112.7 4.9 54 20-73 22-75 (352)
22 cd01562 Thr-dehyd Threonine de 99.6 8.5E-16 1.8E-20 109.9 3.4 57 16-72 7-63 (304)
23 PRK06352 threonine synthase; V 99.6 1.7E-15 3.6E-20 112.2 4.7 54 20-73 22-75 (351)
24 PRK07409 threonine synthase; V 99.6 1.8E-15 4E-20 111.6 4.7 54 20-73 25-78 (353)
25 cd01561 CBS_like CBS_like: Thi 99.6 5.3E-15 1.2E-19 106.0 6.7 53 25-77 1-53 (291)
26 PRK08246 threonine dehydratase 99.6 3.6E-15 7.8E-20 108.6 5.7 52 18-70 15-66 (310)
27 PRK08638 threonine dehydratase 99.6 2E-15 4.4E-20 111.3 4.2 55 17-71 18-72 (333)
28 PRK08198 threonine dehydratase 99.6 2.3E-15 4.9E-20 112.5 4.1 56 17-72 13-68 (404)
29 PRK07048 serine/threonine dehy 99.6 3E-15 6.6E-20 108.9 4.1 55 17-71 15-69 (321)
30 PRK06260 threonine synthase; V 99.5 4E-15 8.6E-20 111.4 4.6 54 20-73 61-115 (397)
31 PRK06382 threonine dehydratase 99.5 4.3E-15 9.4E-20 111.6 4.5 55 18-72 17-71 (406)
32 TIGR02991 ectoine_eutB ectoine 99.5 6.5E-15 1.4E-19 107.7 5.0 54 17-70 10-63 (317)
33 TIGR02035 D_Ser_am_lyase D-ser 99.5 4.7E-15 1E-19 113.2 4.4 56 23-78 67-136 (431)
34 PRK07334 threonine dehydratase 99.5 3.9E-15 8.5E-20 111.7 3.1 54 18-71 15-68 (403)
35 cd01563 Thr-synth_1 Threonine 99.5 8.7E-15 1.9E-19 106.1 4.5 54 19-72 15-69 (324)
36 PRK08197 threonine synthase; V 99.5 6E-15 1.3E-19 110.4 3.7 54 20-73 73-127 (394)
37 PRK08526 threonine dehydratase 99.5 7.7E-15 1.7E-19 110.8 3.5 55 18-72 12-66 (403)
38 cd06448 L-Ser-dehyd Serine deh 99.5 1.4E-14 2.9E-19 106.0 4.7 48 26-73 1-48 (316)
39 PRK02991 D-serine dehydratase; 99.5 1.2E-14 2.6E-19 111.2 4.5 54 24-77 73-140 (441)
40 PRK05638 threonine synthase; V 99.5 1.6E-14 3.6E-19 109.5 5.0 53 20-73 60-112 (442)
41 PRK08639 threonine dehydratase 99.5 8E-15 1.7E-19 110.7 3.0 53 17-69 16-68 (420)
42 PRK06815 hypothetical protein; 99.5 1.3E-14 2.8E-19 105.8 3.8 53 17-69 11-63 (317)
43 PRK07591 threonine synthase; V 99.5 1.4E-14 3E-19 109.6 4.0 54 20-73 83-137 (421)
44 PRK06450 threonine synthase; V 99.5 2.4E-14 5.2E-19 106.0 4.8 46 20-73 52-97 (338)
45 TIGR02079 THD1 threonine dehyd 99.5 1.3E-14 2.8E-19 109.5 3.2 52 18-69 8-59 (409)
46 PLN02569 threonine synthase 99.5 3.1E-14 6.6E-19 110.0 4.8 54 20-73 127-182 (484)
47 PRK08813 threonine dehydratase 99.5 7.3E-14 1.6E-18 104.3 6.3 52 18-75 31-82 (349)
48 TIGR01127 ilvA_1Cterm threonin 99.5 2.3E-14 5E-19 106.2 3.4 48 27-74 1-48 (380)
49 PF00291 PALP: Pyridoxal-phosp 99.5 5.2E-14 1.1E-18 99.8 4.5 54 20-73 1-56 (306)
50 TIGR00260 thrC threonine synth 99.4 4.2E-14 9.1E-19 102.7 3.1 54 20-73 17-71 (328)
51 cd00640 Trp-synth-beta_II Tryp 99.4 2.1E-13 4.6E-18 95.1 6.2 48 27-74 1-48 (244)
52 PRK12483 threonine dehydratase 99.4 1.6E-13 3.4E-18 107.0 5.6 51 19-69 30-80 (521)
53 PLN02550 threonine dehydratase 99.4 1E-13 2.2E-18 109.5 4.5 57 19-76 102-158 (591)
54 TIGR01415 trpB_rel pyridoxal-p 99.4 2.1E-13 4.6E-18 103.7 6.1 54 21-74 62-118 (419)
55 TIGR00263 trpB tryptophan synt 99.4 1.3E-13 2.8E-18 103.4 3.5 53 20-72 43-97 (385)
56 PRK08329 threonine synthase; V 99.4 2.6E-13 5.6E-18 100.3 5.1 46 21-73 59-104 (347)
57 PRK12391 tryptophan synthase s 99.4 4E-13 8.6E-18 102.5 6.1 56 19-74 70-127 (427)
58 TIGR01124 ilvA_2Cterm threonin 99.4 3.8E-13 8.3E-18 104.1 4.6 52 18-69 9-60 (499)
59 PRK09224 threonine dehydratase 99.4 5E-13 1.1E-17 103.3 3.7 52 18-69 12-63 (504)
60 cd06446 Trp-synth_B Tryptophan 99.4 7.9E-13 1.7E-17 98.3 4.6 53 21-73 28-82 (365)
61 PRK04346 tryptophan synthase s 99.3 1E-12 2.2E-17 99.6 4.8 54 20-73 51-106 (397)
62 PLN02618 tryptophan synthase, 99.3 1.7E-12 3.6E-17 98.9 4.6 55 18-72 57-118 (410)
63 TIGR01275 ACC_deam_rel pyridox 99.3 2.2E-12 4.7E-17 93.3 4.9 48 25-72 6-55 (311)
64 PRK13028 tryptophan synthase s 99.3 2.4E-12 5.2E-17 97.7 5.0 54 20-73 55-110 (402)
65 PRK03910 D-cysteine desulfhydr 99.3 2.7E-12 5.9E-17 93.9 4.5 54 19-72 8-63 (331)
66 COG1171 IlvA Threonine dehydra 99.3 1.7E-12 3.6E-17 97.4 3.1 56 18-73 17-72 (347)
67 PRK13802 bifunctional indole-3 99.3 5.3E-12 1.2E-16 101.2 5.6 55 20-74 319-380 (695)
68 TIGR03844 cysteate_syn cysteat 99.3 2.7E-12 5.8E-17 97.0 3.1 50 23-72 59-116 (398)
69 PRK08206 diaminopropionate amm 99.2 5.7E-12 1.2E-16 95.0 3.5 48 22-69 40-89 (399)
70 PRK12390 1-aminocyclopropane-1 99.2 7.2E-12 1.6E-16 91.9 3.9 55 19-73 8-67 (337)
71 PRK14045 1-aminocyclopropane-1 99.2 6.6E-12 1.4E-16 92.1 3.6 56 18-73 13-70 (329)
72 TIGR01274 ACC_deam 1-aminocycl 99.2 1.8E-11 3.9E-16 89.9 4.4 56 19-74 7-67 (337)
73 PRK13803 bifunctional phosphor 99.2 1.4E-11 2.9E-16 97.3 3.9 52 21-72 265-317 (610)
74 cd06449 ACCD Aminocyclopropane 99.1 3.8E-11 8.1E-16 86.9 3.5 47 27-73 1-52 (307)
75 TIGR03528 2_3_DAP_am_ly diamin 99.1 5.4E-11 1.2E-15 89.9 3.1 47 23-69 38-86 (396)
76 TIGR01747 diampropi_NH3ly diam 99.0 1.1E-10 2.4E-15 87.7 3.0 49 23-71 19-69 (376)
77 COG0498 ThrC Threonine synthas 98.9 8.6E-10 1.9E-14 84.3 3.2 51 22-72 72-125 (411)
78 KOG1250 Threonine/serine dehyd 98.9 8.2E-10 1.8E-14 84.7 2.7 54 19-72 59-112 (457)
79 KOG1251 Serine racemase [Signa 98.8 1.1E-09 2.4E-14 80.3 1.9 53 17-69 16-68 (323)
80 KOG1395 Tryptophan synthase be 98.0 2.7E-06 5.9E-11 65.3 1.7 66 8-73 103-171 (477)
81 COG1350 Predicted alternative 98.0 5.3E-06 1.2E-10 63.2 2.9 56 18-73 69-127 (432)
82 cd01560 Thr-synth_2 Threonine 97.5 0.00012 2.7E-09 56.7 4.3 38 27-71 88-128 (460)
83 PRK09225 threonine synthase; V 97.1 0.00039 8.4E-09 54.0 2.9 38 26-70 88-128 (462)
84 COG0133 TrpB Tryptophan syntha 97.0 0.00045 9.8E-09 52.6 2.4 53 21-73 50-103 (396)
85 COG3048 DsdA D-serine dehydrat 94.1 0.03 6.4E-07 43.0 1.8 53 24-76 76-142 (443)
86 COG2515 Acd 1-aminocyclopropan 83.6 1.1 2.4E-05 33.9 2.7 52 22-73 11-64 (323)
87 PLN02891 IMP cyclohydrolase 42.2 17 0.00038 29.5 1.7 20 51-73 516-535 (547)
88 TIGR00355 purH phosphoribosyla 38.8 20 0.00044 28.8 1.7 20 51-73 480-499 (511)
89 PRK07106 5-aminoimidazole-4-ca 37.3 23 0.00051 27.6 1.7 19 51-72 359-377 (390)
90 COG3580 Uncharacterized protei 24.7 1.4E+02 0.003 23.1 4.0 18 43-60 306-323 (351)
91 smart00250 PLEC Plectin repeat 23.5 73 0.0016 16.0 1.7 14 64-77 23-36 (38)
92 PF09345 DUF1987: Domain of un 22.7 1.4E+02 0.0031 18.6 3.2 31 41-72 45-76 (99)
93 PF08361 TetR_C_2: MAATS-type 22.4 1.2E+02 0.0026 18.8 2.9 35 43-77 30-74 (121)
94 PF08541 ACP_syn_III_C: 3-Oxoa 20.7 91 0.002 18.0 2.0 18 61-78 53-70 (90)
95 PF13079 DUF3916: Protein of u 20.4 1.1E+02 0.0024 20.9 2.5 31 47-77 33-63 (153)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.81 E-value=2.1e-20 Score=137.47 Aligned_cols=62 Identities=52% Similarity=0.741 Sum_probs=57.8
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPGK 78 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg~ 78 (78)
++++.+.+|+|||+++..+....+++||+|+|++||+||+|||.|.+||.+|+++|.|+||+
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~ 63 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG 63 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC
Confidence 35688899999999999988777789999999999999999999999999999999999995
No 2
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.76 E-value=1.1e-18 Score=126.51 Aligned_cols=63 Identities=44% Similarity=0.530 Sum_probs=57.6
Q ss_pred chhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 15 AIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 15 ~~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
|+++.+.+.+++|||++++.+....+.+||+|+|++|||||||||+|.+++..|+++|.+.||
T Consensus 1 ~~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g 63 (296)
T PRK11761 1 MAYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG 63 (296)
T ss_pred CccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC
Confidence 345678888999999999998877778999999999999999999999999999999998887
No 3
>PLN03013 cysteine synthase
Probab=99.75 E-value=1.9e-18 Score=131.90 Aligned_cols=62 Identities=69% Similarity=1.236 Sum_probs=58.2
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+.+.+.+.+|+|||++++.+....+++||+|+|++||+||||||+|.++|..|+++|.|.||
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG 174 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPG 174 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCC
Confidence 66788999999999999998776678999999999999999999999999999999999988
No 4
>PLN02565 cysteine synthase
Probab=99.75 E-value=2.5e-18 Score=126.21 Aligned_cols=62 Identities=84% Similarity=1.303 Sum_probs=55.8
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+++++...+|+|||++++.+....+++||+|+|++|||||||||+|..++..+.++|.+.||
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g 66 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPG 66 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCC
Confidence 45578889999999999887655567999999999999999999999999999999999887
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.74 E-value=4.8e-18 Score=126.99 Aligned_cols=62 Identities=66% Similarity=1.007 Sum_probs=57.8
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+.+++...+|+|||++++.+....+++||+|+|++||+||||||+|.+++.+|+++|.++||
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG 110 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPG 110 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCC
Confidence 55778889999999999998777778999999999999999999999999999999999998
No 6
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.73 E-value=9.7e-18 Score=121.14 Aligned_cols=59 Identities=44% Similarity=0.572 Sum_probs=54.1
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPGK 78 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg~ 78 (78)
+.+.+|+|||++++.+....+.+||+|+|++||+||||||+|.+++..|+++|.+.||+
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~ 60 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD 60 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 45678999999999988777789999999999999999999999999999999988873
No 7
>PLN02356 phosphateglycerate kinase
Probab=99.72 E-value=1.1e-17 Score=127.60 Aligned_cols=64 Identities=34% Similarity=0.591 Sum_probs=58.1
Q ss_pred cchhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 14 ~~~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
.....++.+.+|+|||++++.++...+.+||+|+|++|||||||||+|.++|..|+++|.++||
T Consensus 41 ~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~ 104 (423)
T PLN02356 41 KKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG 104 (423)
T ss_pred cchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC
Confidence 3455678889999999999998877788999999999999999999999999999999999776
No 8
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.72 E-value=1.2e-17 Score=124.87 Aligned_cols=68 Identities=66% Similarity=0.941 Sum_probs=61.8
Q ss_pred ccccchhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 036442 11 YHKRAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPGK 78 (78)
Q Consensus 11 ~~~~~~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg~ 78 (78)
.....+..++.+.+|+|||+.++++...+.++||+|+|++||+||.|||.|+.||..|++.|.|+||+
T Consensus 37 ~~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~ 104 (362)
T KOG1252|consen 37 AERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGK 104 (362)
T ss_pred chhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCc
Confidence 33445667899999999999999987777889999999999999999999999999999999999994
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=99.72 E-value=1.6e-17 Score=121.31 Aligned_cols=62 Identities=44% Similarity=0.698 Sum_probs=57.5
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+++++...+++|||++++.+++..|++||+|+|++||+||||||+|.+++..|++.|.+.||
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g 64 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG 64 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC
Confidence 46778889999999999998877788999999999999999999999999999999998876
No 10
>PLN00011 cysteine synthase
Probab=99.71 E-value=1.5e-17 Score=121.62 Aligned_cols=62 Identities=89% Similarity=1.367 Sum_probs=56.2
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+.+++.+.+++|||++++.++...+.+||+|+|++|||||||||+|.+++..|+++|.+.||
T Consensus 7 ~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g 68 (323)
T PLN00011 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPG 68 (323)
T ss_pred HHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCC
Confidence 44567888999999999988765567999999999999999999999999999999999987
No 11
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.70 E-value=2.7e-17 Score=123.41 Aligned_cols=62 Identities=48% Similarity=0.751 Sum_probs=56.3
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCCC
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPGK 78 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg~ 78 (78)
.+++.+.+++|||++++.+++..+++||+|+|++||+||||||+|.+++..|+++|.+.+|+
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~ 63 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD 63 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC
Confidence 34577789999999999988777789999999999999999999999999999999998873
No 12
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.70 E-value=1.1e-17 Score=123.97 Aligned_cols=64 Identities=39% Similarity=0.600 Sum_probs=59.9
Q ss_pred cchhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 14 RAIKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 14 ~~~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
..+...+...+|+|||+|++.++...||+|++|+|++||+||.|||.|+++|+.|+|.|.|.||
T Consensus 37 ~~~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g 100 (391)
T KOG1481|consen 37 PGIVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG 100 (391)
T ss_pred CCccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC
Confidence 4455678889999999999999999999999999999999999999999999999999999987
No 13
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.68 E-value=5.3e-17 Score=117.02 Aligned_cols=57 Identities=61% Similarity=0.954 Sum_probs=52.8
Q ss_pred hhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 21 ~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
.+.+++|||++++.++...+.+||+|+|++|||||||||+|.+++..|.+.|.+.+|
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g 58 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG 58 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC
Confidence 457899999999998877778999999999999999999999999999999998776
No 14
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.67 E-value=1.1e-16 Score=115.29 Aligned_cols=56 Identities=57% Similarity=0.930 Sum_probs=50.8
Q ss_pred hhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 21 ~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
.+.+++|||++++. ....+.+||+|+|++|||||||||+|.+++..|.++|.+.+|
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g 57 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG 57 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC
Confidence 45789999999998 445678999999999999999999999999999999998776
No 15
>PRK06110 hypothetical protein; Provisional
Probab=99.64 E-value=1.8e-16 Score=115.63 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=53.5
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+.+...+++|||++++.+++..|.+||+|+|++||+||||||+|.+++..+.++|...+|
T Consensus 13 ~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~ 72 (322)
T PRK06110 13 AVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRG 72 (322)
T ss_pred HHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCce
Confidence 566788999999999998877788999999999999999999999999999988776543
No 16
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.63 E-value=1.6e-16 Score=120.44 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=51.1
Q ss_pred hhhhhc--cCCCceeeccCccCCCC--------ceEEEEecCCCC-CcchHHHHHHHHHHH-----HHHhCCCCCCC
Q 036442 18 KDATQL--IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVKDRIAFSMIKD-----AEEKGLITPGK 78 (78)
Q Consensus 18 ~~i~~~--vg~TPLv~l~~l~~~~~--------~~v~~KlE~~NP-tGS~KdR~A~~~i~~-----A~~~G~l~pg~ 78 (78)
+.+.+. +++|||++++.++...| .+||+|+|++|| |||||||+|.++|.. |++.|.|+||+
T Consensus 42 ~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~ 118 (404)
T cd06447 42 PETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLED 118 (404)
T ss_pred ccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCccc
Confidence 334444 89999999998876543 799999999999 999999999998864 89999998873
No 17
>PRK06608 threonine dehydratase; Provisional
Probab=99.63 E-value=2.8e-16 Score=115.99 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=53.5
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~ 75 (78)
..+.+.+++|||++++.+++..|++||+|+|++||+||||||+|.+++.+|.++|.+.
T Consensus 15 ~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~ 72 (338)
T PRK06608 15 NRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP 72 (338)
T ss_pred HHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC
Confidence 5678889999999999988878889999999999999999999999999999999763
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.63 E-value=3.1e-16 Score=114.48 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=52.2
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+..|.+.+++|||++++.+++..|.+||+|+|++||+||||||+|.++|..+.+.|.
T Consensus 10 ~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~ 66 (322)
T PRK07476 10 RRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER 66 (322)
T ss_pred HHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh
Confidence 456788899999999999887778899999999999999999999999999998875
No 19
>PLN02970 serine racemase
Probab=99.61 E-value=5.2e-16 Score=113.75 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=49.8
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+.+.+.+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.+++.
T Consensus 19 ~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~ 74 (328)
T PLN02970 19 KRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA 74 (328)
T ss_pred HHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc
Confidence 46778899999999999887778899999999999999999999999999876543
No 20
>PRK06381 threonine synthase; Validated
Probab=99.60 E-value=9.2e-16 Score=111.31 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=48.2
Q ss_pred hhccCCCceeeccCccCCCC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 21 TQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 21 ~~~vg~TPLv~l~~l~~~~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
...+|+|||++++.+....| .+||+|+|++||+||||||+|.+++.+|++.|.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~ 63 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY 63 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC
Confidence 44689999999999887777 599999999999999999999999999999884
No 21
>PRK06721 threonine synthase; Reviewed
Probab=99.59 E-value=1.3e-15 Score=112.71 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=49.3
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||++++.+++..+.+||+|+|++||+||||||+|.+++..|.++|.
T Consensus 22 ~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~ 75 (352)
T PRK06721 22 VSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS 75 (352)
T ss_pred cccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC
Confidence 456689999999999887677899999999999999999999999999999884
No 22
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.58 E-value=8.5e-16 Score=109.90 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=51.8
Q ss_pred hhhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 16 IKKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 16 ~~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
-++++.+.+++|||++++.+....+.+||+|+|++||+||||||.+.+++.++++.|
T Consensus 7 ~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~ 63 (304)
T cd01562 7 AAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEE 63 (304)
T ss_pred HHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhh
Confidence 346788899999999999988777789999999999999999999999999998876
No 23
>PRK06352 threonine synthase; Validated
Probab=99.58 E-value=1.7e-15 Score=112.19 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=49.0
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||++++.++...+.+||+|+|++|||||||||+|.+++.+|.++|.
T Consensus 22 ~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~ 75 (351)
T PRK06352 22 ISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA 75 (351)
T ss_pred cccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC
Confidence 455689999999999887677899999999999999999999999999999874
No 24
>PRK07409 threonine synthase; Validated
Probab=99.58 E-value=1.8e-15 Score=111.56 Aligned_cols=54 Identities=30% Similarity=0.308 Sum_probs=48.9
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||++++.++...+.+||+|+|++|||||||||+|.+++..|+++|.
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~ 78 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA 78 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC
Confidence 455789999999999877667899999999999999999999999999998874
No 25
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.57 E-value=5.3e-15 Score=106.02 Aligned_cols=53 Identities=58% Similarity=0.867 Sum_probs=49.2
Q ss_pred CCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 25 g~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
|+|||++++.+++..+.+||+|+|++||+||||||++.+++..|.+.|.+++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~ 53 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG 53 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC
Confidence 68999999999877788999999999999999999999999999999987655
No 26
>PRK08246 threonine dehydratase; Provisional
Probab=99.57 E-value=3.6e-15 Score=108.63 Aligned_cols=52 Identities=27% Similarity=0.233 Sum_probs=46.8
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEE 70 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~ 70 (78)
+.+.+.+++|||++++.+... +.+||+|+|++|||||||||+|.+++..+.+
T Consensus 15 ~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~ 66 (310)
T PRK08246 15 QRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV 66 (310)
T ss_pred HHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc
Confidence 567889999999999988755 6899999999999999999999999988765
No 27
>PRK08638 threonine dehydratase; Validated
Probab=99.57 E-value=2e-15 Score=111.27 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=49.0
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHh
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEK 71 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~ 71 (78)
.+.+.+.+++|||++++.+++..+++||+|+|++|||||||||+|.+++..+.+.
T Consensus 18 ~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~ 72 (333)
T PRK08638 18 KQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDA 72 (333)
T ss_pred HHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHH
Confidence 3567888999999999998877778999999999999999999999999887653
No 28
>PRK08198 threonine dehydratase; Provisional
Probab=99.56 E-value=2.3e-15 Score=112.45 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=50.4
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
++.+.+.+++|||++++.++...+++||+|+|++|||||||||+|.+++..+.+++
T Consensus 13 ~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~ 68 (404)
T PRK08198 13 RERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEE 68 (404)
T ss_pred HHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhh
Confidence 35677889999999999998777889999999999999999999999999988654
No 29
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.55 E-value=3e-15 Score=108.94 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=49.0
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHh
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEK 71 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~ 71 (78)
++.+.+.+++|||++++.+....+.+||+|+|++||+||||||+|.+++.++.+.
T Consensus 15 ~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~ 69 (321)
T PRK07048 15 AARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPE 69 (321)
T ss_pred HHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHh
Confidence 3567888999999999988766778999999999999999999999999988754
No 30
>PRK06260 threonine synthase; Validated
Probab=99.55 E-value=4e-15 Score=111.45 Aligned_cols=54 Identities=26% Similarity=0.197 Sum_probs=48.5
Q ss_pred hhhccCCCceeeccCccCCCCc-eEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~-~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||++++.++...|. +||+|+|++|||||||||++..+|..|.++|.
T Consensus 61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~ 115 (397)
T PRK06260 61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV 115 (397)
T ss_pred ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC
Confidence 4556799999999988776776 89999999999999999999999999999875
No 31
>PRK06382 threonine dehydratase; Provisional
Probab=99.55 E-value=4.3e-15 Score=111.62 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=49.2
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
..+.+.+++|||++++.++...|++||+|+|++||+||||||+|.+++..+.+.+
T Consensus 17 ~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~ 71 (406)
T PRK06382 17 SYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDE 71 (406)
T ss_pred HHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhc
Confidence 4677889999999999988778889999999999999999999999998877643
No 32
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.54 E-value=6.5e-15 Score=107.67 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=48.1
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEE 70 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~ 70 (78)
++.+.+.+++|||++++.++...+.+||+|+|++||+||||||+|.+++..+.+
T Consensus 10 ~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~ 63 (317)
T TIGR02991 10 AARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSD 63 (317)
T ss_pred HHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhH
Confidence 356788899999999998877677899999999999999999999999988654
No 33
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.54 E-value=4.7e-15 Score=113.19 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=49.1
Q ss_pred ccCCCceeeccCccC--------CCCceEEEEecCCCC-CcchHHHHHHHHHHH-----HHHhCCCCCCC
Q 036442 23 LIGNTPMVYLNNVVD--------GCVARIAAKLEMMEP-CCSVKDRIAFSMIKD-----AEEKGLITPGK 78 (78)
Q Consensus 23 ~vg~TPLv~l~~l~~--------~~~~~v~~KlE~~NP-tGS~KdR~A~~~i~~-----A~~~G~l~pg~ 78 (78)
.+++|||++++.+++ ..+.+||+|+|++|| |||||||+|.++|.. |++.|.|+||+
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~ 136 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDD 136 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCc
Confidence 689999999998875 235799999999999 999999999999875 88999998863
No 34
>PRK07334 threonine dehydratase; Provisional
Probab=99.53 E-value=3.9e-15 Score=111.66 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=48.2
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHh
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEK 71 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~ 71 (78)
+.+.+.+++|||++++.++...|.+||+|+|++|||||||||+|.+++..+.++
T Consensus 15 ~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~ 68 (403)
T PRK07334 15 ARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEE 68 (403)
T ss_pred HHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHH
Confidence 467888999999999998877788999999999999999999999999887543
No 35
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.53 E-value=8.7e-15 Score=106.12 Aligned_cols=54 Identities=28% Similarity=0.233 Sum_probs=48.5
Q ss_pred hhhhccCCCceeeccCccCCCC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
.+.-.+|+|||++++.++...+ .+||+|+|++||+||||||+|.+++..|+++|
T Consensus 15 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g 69 (324)
T cd01563 15 IVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG 69 (324)
T ss_pred cccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC
Confidence 3566789999999999876555 69999999999999999999999999999887
No 36
>PRK08197 threonine synthase; Validated
Probab=99.52 E-value=6e-15 Score=110.40 Aligned_cols=54 Identities=26% Similarity=0.208 Sum_probs=47.8
Q ss_pred hhhccCCCceeeccCccCCCC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+....|+|||++++.+++..| .+||+|+|++|||||||||+|..++..|.+.|.
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~ 127 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV 127 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC
Confidence 444578999999998877666 489999999999999999999999999999874
No 37
>PRK08526 threonine dehydratase; Provisional
Probab=99.51 E-value=7.7e-15 Score=110.78 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=49.6
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
+.+.+.+++|||++++.++...+++||+|+|++|||||||||+|.++|..+.+.+
T Consensus 12 ~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~ 66 (403)
T PRK08526 12 QRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQ 66 (403)
T ss_pred HHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhh
Confidence 4677889999999999998777889999999999999999999999998887653
No 38
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.51 E-value=1.4e-14 Score=105.95 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=44.9
Q ss_pred CCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 26 ~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+|||++++.+.+..+++||+|+|++||+||||||++.+++..|+++|.
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~ 48 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL 48 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc
Confidence 699999999887677899999999999999999999999999999985
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=99.51 E-value=1.2e-14 Score=111.23 Aligned_cols=54 Identities=26% Similarity=0.288 Sum_probs=47.2
Q ss_pred cCCCceeeccCccCCCC--------ceEEEEecCCCC-CcchHHHHHHHHHHH-----HHHhCCCCCC
Q 036442 24 IGNTPMVYLNNVVDGCV--------ARIAAKLEMMEP-CCSVKDRIAFSMIKD-----AEEKGLITPG 77 (78)
Q Consensus 24 vg~TPLv~l~~l~~~~~--------~~v~~KlE~~NP-tGS~KdR~A~~~i~~-----A~~~G~l~pg 77 (78)
+++|||++++.++...+ .+||+|+|++|| |||||||+|.++|.. +++.|.+.||
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~ 140 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLD 140 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcC
Confidence 79999999998875443 699999999999 999999999998875 6789988776
No 40
>PRK05638 threonine synthase; Validated
Probab=99.51 E-value=1.6e-14 Score=109.49 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=45.7
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||+++. +....|.+||+|+|++|||||||||+|..+|..|++.|.
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~ 112 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA 112 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC
Confidence 34567999999985 555567799999999999999999999999999998764
No 41
>PRK08639 threonine dehydratase; Validated
Probab=99.50 E-value=8e-15 Score=110.68 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=47.5
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
.+.+.+.+++|||++++.+++..+++||+|+|++|||||||||+|.+++..+.
T Consensus 16 ~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~ 68 (420)
T PRK08639 16 AKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLS 68 (420)
T ss_pred HHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCC
Confidence 35677889999999999988777889999999999999999999999998843
No 42
>PRK06815 hypothetical protein; Provisional
Probab=99.50 E-value=1.3e-14 Score=105.76 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=47.2
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
++.+.+.+++|||++++.+++..+.+||+|+|++|||||||||+|.+++..+.
T Consensus 11 ~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~ 63 (317)
T PRK06815 11 HQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLN 63 (317)
T ss_pred HHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcc
Confidence 45677889999999999888767789999999999999999999999998654
No 43
>PRK07591 threonine synthase; Validated
Probab=99.50 E-value=1.4e-14 Score=109.63 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=48.2
Q ss_pred hhhccCCCceeeccCccCCCC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+|+|||++++.+++..| .+||+|+|++|||||||||++..++..|.+.|.
T Consensus 83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~ 137 (421)
T PRK07591 83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF 137 (421)
T ss_pred CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC
Confidence 344679999999999887777 489999999999999999999999999999884
No 44
>PRK06450 threonine synthase; Validated
Probab=99.49 E-value=2.4e-14 Score=105.97 Aligned_cols=46 Identities=33% Similarity=0.442 Sum_probs=41.2
Q ss_pred hhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
++..+|+|||++.. +||+|+|++|||||||||+|..++..|.+.|.
T Consensus 52 vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~ 97 (338)
T PRK06450 52 ISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI 97 (338)
T ss_pred CCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC
Confidence 55678999999854 59999999999999999999999999999873
No 45
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.49 E-value=1.3e-14 Score=109.49 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=46.9
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
+.+.+.+++|||++++.+++..+.+||+|+|++|||||||||+|.+++..+.
T Consensus 8 ~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~ 59 (409)
T TIGR02079 8 KRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLS 59 (409)
T ss_pred HHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCC
Confidence 4677889999999999988777889999999999999999999999997643
No 46
>PLN02569 threonine synthase
Probab=99.48 E-value=3.1e-14 Score=109.98 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=47.8
Q ss_pred hhhccCCCceeeccCccCC-CC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDG-CV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~-~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
++..+|+|||++++.+.+. .| .+||+|+|++|||||||||++..++..|.+.|.
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~ 182 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRK 182 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhh
Confidence 4556799999999998766 66 489999999999999999999999999998776
No 47
>PRK08813 threonine dehydratase; Provisional
Probab=99.48 E-value=7.3e-14 Score=104.27 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=46.4
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLIT 75 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~ 75 (78)
..+.+.+++|||+++..+ +||+|+|++|||||||||+|.+++..+.+.|..+
T Consensus 31 ~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~ 82 (349)
T PRK08813 31 ARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDER 82 (349)
T ss_pred HHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCC
Confidence 567888999999998754 3999999999999999999999999999988653
No 48
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.47 E-value=2.3e-14 Score=106.22 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=44.7
Q ss_pred CceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC
Q 036442 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 27 TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l 74 (78)
|||++++.++...|++||+|+|++|||||||||+|.+++.++.++|..
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~ 48 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ 48 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC
Confidence 899999999877888999999999999999999999999999988754
No 49
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.47 E-value=5.2e-14 Score=99.76 Aligned_cols=54 Identities=37% Similarity=0.375 Sum_probs=45.2
Q ss_pred hhhccCCCceeecc--CccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLN--NVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~--~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
|+..+++|||++++ .+....+.+||+|+|++||+||||||++.+++..|+++|.
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~ 56 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG 56 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc
Confidence 46778999999975 3344557899999999999999999999999999988753
No 50
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.45 E-value=4.2e-14 Score=102.68 Aligned_cols=54 Identities=22% Similarity=0.118 Sum_probs=47.7
Q ss_pred hhhccCCCceeeccCccCCCCc-eEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGNTPMVYLNNVVDGCVA-RIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~TPLv~l~~l~~~~~~-~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+...+++|||++++.+....+. +||+|+|++|||||||||++.+++..+.+.|.
T Consensus 17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~ 71 (328)
T TIGR00260 17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN 71 (328)
T ss_pred hhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC
Confidence 3445699999999988776776 99999999999999999999999999998875
No 51
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.44 E-value=2.1e-13 Score=95.06 Aligned_cols=48 Identities=42% Similarity=0.488 Sum_probs=44.7
Q ss_pred CceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC
Q 036442 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 27 TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l 74 (78)
|||++++.+....+.+||+|+|+.||+||||||++..++..+.+.|.+
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~ 48 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL 48 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC
Confidence 899999998876678999999999999999999999999999999866
No 52
>PRK12483 threonine dehydratase; Reviewed
Probab=99.43 E-value=1.6e-13 Score=106.96 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=46.4
Q ss_pred hhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
.+.+.+++|||++++.++...|++||+|+|++|||||||+|+|++++..+.
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~ 80 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLP 80 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhH
Confidence 566788999999999998888899999999999999999999999998654
No 53
>PLN02550 threonine dehydratase
Probab=99.43 E-value=1e-13 Score=109.48 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=49.4
Q ss_pred hhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLITP 76 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l~p 76 (78)
.+.+.+++|||++++.++...|++||+|+|++||+||||+|+|+++|.++.+. .+.+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e-~~~~ 158 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKE-QLDK 158 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHh-cCCC
Confidence 34578899999999999888889999999999999999999999999988644 3444
No 54
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.43 E-value=2.1e-13 Score=103.70 Aligned_cols=54 Identities=28% Similarity=0.218 Sum_probs=47.3
Q ss_pred hhccC-CCceeeccCccCCCC--ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC
Q 036442 21 TQLIG-NTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 21 ~~~vg-~TPLv~l~~l~~~~~--~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l 74 (78)
...++ .|||++++.+.+.++ ++||+|+|++|||||||||+|..++..|.+.|..
T Consensus 62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~ 118 (419)
T TIGR01415 62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAK 118 (419)
T ss_pred HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCC
Confidence 44554 799999999887655 6899999999999999999999999999999853
No 55
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.41 E-value=1.3e-13 Score=103.40 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=46.6
Q ss_pred hhhccC-CCceeeccCccCCCC-ceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 20 ATQLIG-NTPMVYLNNVVDGCV-ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 20 i~~~vg-~TPLv~l~~l~~~~~-~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
+...++ +|||++++.+++..+ .+||+|+|++|||||||||.|..++..|++.|
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g 97 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMG 97 (385)
T ss_pred HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcC
Confidence 344555 899999999887666 79999999999999999999999999998877
No 56
>PRK08329 threonine synthase; Validated
Probab=99.41 E-value=2.6e-13 Score=100.30 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=40.6
Q ss_pred hhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 21 TQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 21 ~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+-..|.|||+++. .+||+|+|++|||||||||+|..++..|.+.|.
T Consensus 59 sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~ 104 (347)
T PRK08329 59 HLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI 104 (347)
T ss_pred cCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 4446899999863 489999999999999999999999999999874
No 57
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.41 E-value=4e-13 Score=102.48 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=49.1
Q ss_pred hhhhccCCCceeeccCccCCCC--ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~--~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l 74 (78)
.+....++|||++++++.+..+ .+||+|+|++||+||||||+|..++..|.+.|..
T Consensus 70 ~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~ 127 (427)
T PRK12391 70 EIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIK 127 (427)
T ss_pred HHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCC
Confidence 3456678999999999876555 6899999999999999999999999999999864
No 58
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.38 E-value=3.8e-13 Score=104.08 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=47.3
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
..+.+.+++|||++++.++...+++||+|+|++||+||||+|+|++++..+.
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~ 60 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLS 60 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhh
Confidence 3577889999999999998878889999999999999999999999998764
No 59
>PRK09224 threonine dehydratase; Reviewed
Probab=99.35 E-value=5e-13 Score=103.34 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=47.2
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
..+.+.+++|||++++.++...+.+||+|+|++||+||||+|+|++++..+.
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~ 63 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLT 63 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhh
Confidence 3567888999999999988878889999999999999999999999998765
No 60
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.35 E-value=7.9e-13 Score=98.26 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=45.9
Q ss_pred hhccC-CCceeeccCccCCC-CceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 21 TQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 21 ~~~vg-~TPLv~l~~l~~~~-~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
.++++ .|||++++.++... +.+||+|+|++||+||||||.+..++..|.+.|.
T Consensus 28 ~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~ 82 (365)
T cd06446 28 KDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK 82 (365)
T ss_pred hccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC
Confidence 33344 89999999987766 5799999999999999999999999999998874
No 61
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.34 E-value=1e-12 Score=99.62 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=48.2
Q ss_pred hhhccCC-CceeeccCccCCC-CceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIGN-TPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg~-TPLv~l~~l~~~~-~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+.+.+|+ |||++++++++.. +++||+|+|++|||||||+|.+...+..|++.|.
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk 106 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK 106 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC
Confidence 3566785 9999999998877 5799999999999999999999999999998874
No 62
>PLN02618 tryptophan synthase, beta chain
Probab=99.32 E-value=1.7e-12 Score=98.87 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=47.7
Q ss_pred hhhhhccC-CCceeeccCccCCC------CceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 18 KDATQLIG-NTPMVYLNNVVDGC------VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 18 ~~i~~~vg-~TPLv~l~~l~~~~------~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
..+.+.+| +|||++++++++.. +++||+|+|++|||||||||.+...+..|.+.|
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g 118 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLG 118 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcC
Confidence 44567787 79999999988755 479999999999999999999999988888776
No 63
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.31 E-value=2.2e-12 Score=93.26 Aligned_cols=48 Identities=27% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCCceeeccCccCCCCceEEEEecCCCCC--cchHHHHHHHHHHHHHHhC
Q 036442 25 GNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 25 g~TPLv~l~~l~~~~~~~v~~KlE~~NPt--GS~KdR~A~~~i~~A~~~G 72 (78)
.+|||++++.++...+.+||+|+|++||+ ||||||.+..++..|+++|
T Consensus 6 ~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g 55 (311)
T TIGR01275 6 WPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKG 55 (311)
T ss_pred CCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcC
Confidence 68999999988876778999999999998 9999999999999999998
No 64
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.31 E-value=2.4e-12 Score=97.70 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=48.0
Q ss_pred hhhccC-CCceeeccCccCCC-CceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 20 ATQLIG-NTPMVYLNNVVDGC-VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 20 i~~~vg-~TPLv~l~~l~~~~-~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+.+.+| .|||++++++++.. +++||+|+|++|||||||||.+..++..|++.|.
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~ 110 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK 110 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC
Confidence 356677 69999999998877 5799999999999999999999999999998874
No 65
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.29 E-value=2.7e-12 Score=93.93 Aligned_cols=54 Identities=19% Similarity=0.041 Sum_probs=48.5
Q ss_pred hhhhccCCCceeeccCccCCCCceEEEEecCCCCC--cchHHHHHHHHHHHHHHhC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPt--GS~KdR~A~~~i~~A~~~G 72 (78)
.+...+++|||++++.+++..+.+||+|+|++||+ ||||||.+..++..|++.|
T Consensus 8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g 63 (331)
T PRK03910 8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQG 63 (331)
T ss_pred CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 35667899999999988776778999999999997 5999999999999999888
No 66
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=99.29 E-value=1.7e-12 Score=97.37 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=49.5
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
..+...+..|||.+++.++...+++||+|+|++||+||||.|+|++.+....+.+.
T Consensus 17 ~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~ 72 (347)
T COG1171 17 ARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEE 72 (347)
T ss_pred HHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhh
Confidence 45677889999999999998889999999999999999999999999988764433
No 67
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.28 E-value=5.3e-12 Score=101.24 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=47.5
Q ss_pred hhhccC-CCceeeccCccCC----CC--ceEEEEecCCCCCcchHHHHHHHHHHHHHHhCCC
Q 036442 20 ATQLIG-NTPMVYLNNVVDG----CV--ARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 20 i~~~vg-~TPLv~l~~l~~~----~~--~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~l 74 (78)
+...+| +|||+++++++.. .| ++||+|+|++|||||||||+|..++..|++.|..
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~ 380 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT 380 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC
Confidence 356688 9999999987642 33 6999999999999999999999999999998864
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.26 E-value=2.7e-12 Score=97.02 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=43.6
Q ss_pred ccCCCceeeccCccCCCCc-eEEEEecC-------CCCCcchHHHHHHHHHHHHHHhC
Q 036442 23 LIGNTPMVYLNNVVDGCVA-RIAAKLEM-------MEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 23 ~vg~TPLv~l~~l~~~~~~-~v~~KlE~-------~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
..|.||+++...+++..|. +||+|+|+ +|||||||||+|..+|..|.+.|
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g 116 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG 116 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC
Confidence 4568999999988877787 89995555 89999999999999999999887
No 69
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.23 E-value=5.7e-12 Score=94.97 Aligned_cols=48 Identities=17% Similarity=-0.020 Sum_probs=42.6
Q ss_pred hccCCCceeeccCccCCCC-ceEEEEecCC-CCCcchHHHHHHHHHHHHH
Q 036442 22 QLIGNTPMVYLNNVVDGCV-ARIAAKLEMM-EPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 22 ~~vg~TPLv~l~~l~~~~~-~~v~~KlE~~-NPtGS~KdR~A~~~i~~A~ 69 (78)
..+++|||++++.++...| .+||+|+|++ ||+||||||++.+.+..+.
T Consensus 40 ~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~ 89 (399)
T PRK08206 40 PGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLL 89 (399)
T ss_pred CCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHH
Confidence 3678999999999887778 5999999998 6999999999998887776
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.23 E-value=7.2e-12 Score=91.90 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=48.1
Q ss_pred hhhhccCCCceeeccCccCCCC--ceEEEEecCCCCC---cchHHHHHHHHHHHHHHhCC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPC---CSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~--~~v~~KlE~~NPt---GS~KdR~A~~~i~~A~~~G~ 73 (78)
.+...+|+|||++++.+....+ .+||+|+|++||+ ||+|||.+..++.+|+++|.
T Consensus 8 ~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~ 67 (337)
T PRK12390 8 RYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA 67 (337)
T ss_pred ccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC
Confidence 4555689999999998876666 6899999999998 77799999999999999886
No 71
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.23 E-value=6.6e-12 Score=92.06 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=49.7
Q ss_pred hhhhhccCCCceeeccCccCCCCceEEEEecCCCCC--cchHHHHHHHHHHHHHHhCC
Q 036442 18 KDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPC--CSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 18 ~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPt--GS~KdR~A~~~i~~A~~~G~ 73 (78)
+.+...+++|||++++.++...+++||+|+|++||+ ||||||.+..++.+|+++|.
T Consensus 13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~ 70 (329)
T PRK14045 13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA 70 (329)
T ss_pred CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC
Confidence 456667899999999988766778999999999997 89999999999999999983
No 72
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.19 E-value=1.8e-11 Score=89.89 Aligned_cols=56 Identities=21% Similarity=0.155 Sum_probs=48.1
Q ss_pred hhhhccCCCceeeccCccCCCC--ceEEEEecCCCCC---cchHHHHHHHHHHHHHHhCCC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCV--ARIAAKLEMMEPC---CSVKDRIAFSMIKDAEEKGLI 74 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~--~~v~~KlE~~NPt---GS~KdR~A~~~i~~A~~~G~l 74 (78)
.+.-.+|+|||++++.+++..+ .+||+|+|++||+ ||+|||.+..++.+|+++|..
T Consensus 7 ~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~ 67 (337)
T TIGR01274 7 RYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT 67 (337)
T ss_pred ccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC
Confidence 3445679999999999887665 3899999999987 777999999999999999864
No 73
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.19 E-value=1.4e-11 Score=97.33 Aligned_cols=52 Identities=27% Similarity=0.165 Sum_probs=46.4
Q ss_pred hhccC-CCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 21 TQLIG-NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 21 ~~~vg-~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
...+| .|||++++++++..|.+||+|+|++|||||||+|.+...+..|.+.|
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g 317 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMG 317 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcC
Confidence 44566 79999999998777889999999999999999999999999998876
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.13 E-value=3.8e-11 Score=86.93 Aligned_cols=47 Identities=28% Similarity=0.244 Sum_probs=41.9
Q ss_pred CceeeccCccCCC--CceEEEEecCCCCC---cchHHHHHHHHHHHHHHhCC
Q 036442 27 TPMVYLNNVVDGC--VARIAAKLEMMEPC---CSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 27 TPLv~l~~l~~~~--~~~v~~KlE~~NPt---GS~KdR~A~~~i~~A~~~G~ 73 (78)
|||++++.+++.. +.+||+|+|++||+ ||+|||.+..++.+|+++|.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~ 52 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA 52 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC
Confidence 8999999887655 56899999999999 56699999999999999886
No 75
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.09 E-value=5.4e-11 Score=89.88 Aligned_cols=47 Identities=19% Similarity=-0.014 Sum_probs=41.4
Q ss_pred ccCCCceeeccCccCCCC-ceEEEEecCCC-CCcchHHHHHHHHHHHHH
Q 036442 23 LIGNTPMVYLNNVVDGCV-ARIAAKLEMME-PCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 23 ~vg~TPLv~l~~l~~~~~-~~v~~KlE~~N-PtGS~KdR~A~~~i~~A~ 69 (78)
.+..|||++++.++...| ++||+|+|++| |+||||+|+|.+.+..+.
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~ 86 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYL 86 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHH
Confidence 457899999999887778 69999999988 599999999999998863
No 76
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.04 E-value=1.1e-10 Score=87.65 Aligned_cols=49 Identities=16% Similarity=-0.031 Sum_probs=42.7
Q ss_pred ccCCCceeeccCccCCCC-ceEEEEecCCCC-CcchHHHHHHHHHHHHHHh
Q 036442 23 LIGNTPMVYLNNVVDGCV-ARIAAKLEMMEP-CCSVKDRIAFSMIKDAEEK 71 (78)
Q Consensus 23 ~vg~TPLv~l~~l~~~~~-~~v~~KlE~~NP-tGS~KdR~A~~~i~~A~~~ 71 (78)
.+.+|||++++.+.+..| .+||+|+|++|+ +||||||++.+.+..+.++
T Consensus 19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~ 69 (376)
T TIGR01747 19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAE 69 (376)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 347899999999988888 589999999985 8999999999999887653
No 77
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=98.90 E-value=8.6e-10 Score=84.30 Aligned_cols=51 Identities=24% Similarity=0.139 Sum_probs=44.1
Q ss_pred hccCCCceeeccCccCCCCc---eEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 22 QLIGNTPMVYLNNVVDGCVA---RIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 22 ~~vg~TPLv~l~~l~~~~~~---~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
-..|.||+++...+....+. ++|+|.|+.|||||||||++..++..+.+.|
T Consensus 72 l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g 125 (411)
T COG0498 72 LGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELG 125 (411)
T ss_pred hhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhc
Confidence 34589999998776665553 5999999999999999999999999999988
No 78
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=98.89 E-value=8.2e-10 Score=84.69 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=47.6
Q ss_pred hhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhC
Q 036442 19 DATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 19 ~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G 72 (78)
.+...+-.||+.+.-.++...+.++|+|.|+.||+||||.|+|.+++.+.-+++
T Consensus 59 ~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~ 112 (457)
T KOG1250|consen 59 KIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQ 112 (457)
T ss_pred ccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhh
Confidence 456677899999998888888999999999999999999999999998776654
No 79
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=98.84 E-value=1.1e-09 Score=80.34 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=48.2
Q ss_pred hhhhhhccCCCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHH
Q 036442 17 KKDATQLIGNTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAE 69 (78)
Q Consensus 17 ~~~i~~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~ 69 (78)
++++...+..||.+.+..+....|.++|+|||++|.+||||.|+|.+.+..+.
T Consensus 16 ~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~ 68 (323)
T KOG1251|consen 16 HQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLK 68 (323)
T ss_pred HHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhh
Confidence 45788889999999999998888999999999999999999999999887766
No 80
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=98.00 E-value=2.7e-06 Score=65.28 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=50.0
Q ss_pred cccccccchhhhhhhccC-CCceeeccCccCCC--CceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 8 EDNYHKRAIKKDATQLIG-NTPMVYLNNVVDGC--VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 8 ~~~~~~~~~~~~i~~~vg-~TPLv~l~~l~~~~--~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
+++..-..-+..|...+| .|||++..++.+.+ +++||+|-|..|++||+|...|..-+.-|.+.|.
T Consensus 103 ~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk 171 (477)
T KOG1395|consen 103 ERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK 171 (477)
T ss_pred hccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc
Confidence 333333333345565665 69999998887643 5799999999999999999999988888888775
No 81
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=97.97 E-value=5.3e-06 Score=63.18 Aligned_cols=56 Identities=30% Similarity=0.334 Sum_probs=47.0
Q ss_pred hhhhhccC-CCceeeccCccCCC--CceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 18 KDATQLIG-NTPMVYLNNVVDGC--VARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 18 ~~i~~~vg-~TPLv~l~~l~~~~--~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
..+...+| .|||+|..++.+-+ .++||.|.|+..|+||+|...|....-.|...|.
T Consensus 69 ~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~ 127 (432)
T COG1350 69 REAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA 127 (432)
T ss_pred HHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc
Confidence 34555665 89999999987644 4699999999999999999999999888888875
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=97.52 E-value=0.00012 Score=56.70 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=30.4
Q ss_pred CceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHH---HHHHHHh
Q 036442 27 TPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSM---IKDAEEK 71 (78)
Q Consensus 27 TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~---i~~A~~~ 71 (78)
+||.++. .++|++-.++|||||||||++..+ +..+.+.
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~ 128 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKR 128 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHh
Confidence 7777654 258999999999999999998865 6777654
No 83
>PRK09225 threonine synthase; Validated
Probab=97.11 E-value=0.00039 Score=54.04 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHH---HHHHHHH
Q 036442 26 NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFS---MIKDAEE 70 (78)
Q Consensus 26 ~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~---~i~~A~~ 70 (78)
.+||.+++ .++|+.=-++|||||||||++.. ++..+.+
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~ 128 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK 128 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh
Confidence 37877764 24788667789999999999988 8888887
No 84
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00045 Score=52.61 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=47.2
Q ss_pred hhccC-CCceeeccCccCCCCceEEEEecCCCCCcchHHHHHHHHHHHHHHhCC
Q 036442 21 TQLIG-NTPMVYLNNVVDGCVARIAAKLEMMEPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 21 ~~~vg-~TPLv~l~~l~~~~~~~v~~KlE~~NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
.+..| .|||....++++..+++||+|-|-+|-||++|..-+..-+.-|.+.|.
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK 103 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK 103 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC
Confidence 44565 699999999998889999999999999999999999998888888775
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=94.14 E-value=0.03 Score=42.96 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=37.3
Q ss_pred cCCCceeeccCccC--------CCCceEEEEecCCCC-CcchHHHHHHHHH-HH----HHHhCCCCC
Q 036442 24 IGNTPMVYLNNVVD--------GCVARIAAKLEMMEP-CCSVKDRIAFSMI-KD----AEEKGLITP 76 (78)
Q Consensus 24 vg~TPLv~l~~l~~--------~~~~~v~~KlE~~NP-tGS~KdR~A~~~i-~~----A~~~G~l~p 76 (78)
+..+||+.+...-+ ....++|+|+++.-| +||+|.|+..+=+ .. |.+.|.|+.
T Consensus 76 iIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~ 142 (443)
T COG3048 76 IIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTL 142 (443)
T ss_pred eeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccc
Confidence 45678887765421 233589999999988 9999999976644 33 456676654
No 86
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=83.55 E-value=1.1 Score=33.90 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=43.8
Q ss_pred hccCCCceeeccCccCCCCceEEEEecCCCC--CcchHHHHHHHHHHHHHHhCC
Q 036442 22 QLIGNTPMVYLNNVVDGCVARIAAKLEMMEP--CCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 22 ~~vg~TPLv~l~~l~~~~~~~v~~KlE~~NP--tGS~KdR~A~~~i~~A~~~G~ 73 (78)
-....||+-.++++++..+.+||+|-|-..+ .|--|.|=-.+++-+|.+.|.
T Consensus 11 l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~ 64 (323)
T COG2515 11 LIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA 64 (323)
T ss_pred cCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC
Confidence 3456799999999988888999999998844 457999999999999988875
No 87
>PLN02891 IMP cyclohydrolase
Probab=42.21 E-value=17 Score=29.45 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhCC
Q 036442 51 EPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 51 NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
||+||++|. -.|..|.+.|.
T Consensus 516 QPGGSiRD~---evI~aane~gi 535 (547)
T PLN02891 516 EPGGSMRDQ---DAIDCCNKYGV 535 (547)
T ss_pred CCCCCCCcH---HHHHHHHHhCC
Confidence 899999998 66777777763
No 88
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=38.81 E-value=20 Score=28.81 Aligned_cols=20 Identities=35% Similarity=0.583 Sum_probs=15.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhCC
Q 036442 51 EPCCSVKDRIAFSMIKDAEEKGL 73 (78)
Q Consensus 51 NPtGS~KdR~A~~~i~~A~~~G~ 73 (78)
||+||++|. -.|..|.+.|.
T Consensus 480 QPGGSiRD~---evI~aa~e~gi 499 (511)
T TIGR00355 480 QPGGSMRDE---DSIWAADEHGI 499 (511)
T ss_pred cCCCCCCcH---HHHHHHHHhCC
Confidence 799999998 66777777663
No 89
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=37.31 E-value=23 Score=27.57 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=15.8
Q ss_pred CCCcchHHHHHHHHHHHHHHhC
Q 036442 51 EPCCSVKDRIAFSMIKDAEEKG 72 (78)
Q Consensus 51 NPtGS~KdR~A~~~i~~A~~~G 72 (78)
||+||++|. ..|..|-+.|
T Consensus 359 QPGGSiRD~---evI~aane~g 377 (390)
T PRK07106 359 QPGGSIRDD---NVIETCNKYG 377 (390)
T ss_pred CCCCCCCcH---HHHHHHHHhC
Confidence 999999998 6677777766
No 90
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.66 E-value=1.4e+02 Score=23.07 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=16.9
Q ss_pred EEEEecCCCCCcchHHHH
Q 036442 43 IAAKLEMMEPCCSVKDRI 60 (78)
Q Consensus 43 v~~KlE~~NPtGS~KdR~ 60 (78)
.++|++-.++.|++|.|.
T Consensus 306 tvlkIDE~tn~gai~iRl 323 (351)
T COG3580 306 TVLKIDEGTNLGAIRIRL 323 (351)
T ss_pred EEEEecCCCCcchhhhhH
Confidence 688999999999999998
No 91
>smart00250 PLEC Plectin repeat.
Probab=23.45 E-value=73 Score=16.04 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCCCC
Q 036442 64 MIKDAEEKGLITPG 77 (78)
Q Consensus 64 ~i~~A~~~G~l~pg 77 (78)
-+.+|.++|.+.+.
T Consensus 23 sv~eA~~~glid~~ 36 (38)
T smart00250 23 SVEEALRRGLIDPE 36 (38)
T ss_pred CHHHHHHcCCCCcc
Confidence 36788888888775
No 92
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=22.70 E-value=1.4e+02 Score=18.58 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCCcchHHHH-HHHHHHHHHHhC
Q 036442 41 ARIAAKLEMMEPCCSVKDRI-AFSMIKDAEEKG 72 (78)
Q Consensus 41 ~~v~~KlE~~NPtGS~KdR~-A~~~i~~A~~~G 72 (78)
..+-+|++++|- .|.|.-. -..++.++.+.|
T Consensus 45 i~~~~~L~YfNT-SSsk~l~~i~~~Le~~~~~g 76 (99)
T PF09345_consen 45 ITFNFKLSYFNT-SSSKALMDIFDLLEDAAQKG 76 (99)
T ss_pred EEEEEEEEEEec-HhHHHHHHHHHHHHHHHhcC
Confidence 579999999996 5566433 455666665555
No 93
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=22.35 E-value=1.2e+02 Score=18.81 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=23.3
Q ss_pred EEEEecCCCCCcchHHHHH----------HHHHHHHHHhCCCCCC
Q 036442 43 IAAKLEMMEPCCSVKDRIA----------FSMIKDAEEKGLITPG 77 (78)
Q Consensus 43 v~~KlE~~NPtGS~KdR~A----------~~~i~~A~~~G~l~pg 77 (78)
+|-|||+..-..++..|-- ...+..|.++|.|.++
T Consensus 30 ~~~kcE~~~e~~~~~~r~~~~~~~~~~~i~~~l~~A~~~g~L~~~ 74 (121)
T PF08361_consen 30 LFHKCEYVEEMAPVRERRREAQREALARIERLLRRAQARGQLPAD 74 (121)
T ss_dssp HHHS--SSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-TT
T ss_pred HHHhcccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5569999998888877531 2356788899999775
No 94
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=20.71 E-value=91 Score=18.01 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 036442 61 AFSMIKDAEEKGLITPGK 78 (78)
Q Consensus 61 A~~~i~~A~~~G~l~pg~ 78 (78)
....+.++.++|.++||+
T Consensus 53 ~~~~L~~~~~~g~~~~Gd 70 (90)
T PF08541_consen 53 IPINLADALEEGRIKPGD 70 (90)
T ss_dssp HHHHHHHHHHTTSSCTTE
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 345678899999999984
No 95
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=20.35 E-value=1.1e+02 Score=20.90 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=26.2
Q ss_pred ecCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 036442 47 LEMMEPCCSVKDRIAFSMIKDAEEKGLITPG 77 (78)
Q Consensus 47 lE~~NPtGS~KdR~A~~~i~~A~~~G~l~pg 77 (78)
+|+.++.+++|-.++..+|.+|...=.++|.
T Consensus 33 i~s~~t~~~vkr~c~Q~LIn~a~~Li~~kp~ 63 (153)
T PF13079_consen 33 IESKKTPRKVKRLCIQTLINAAEHLIQAKPD 63 (153)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 4677899999999999999999987666663
Done!