BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036444
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 1 SLDLIKYVDSNF--EGPSLLPDDPEKRKFAEELFSYSDTFNITVYGSF--------KGDP 50
S+ +++Y+D F GPSLLP DP +R A +Y D + + + K +
Sbjct: 69 SMIILQYIDEVFASTGPSLLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEG 128
Query: 51 AKEAGPCFDYLEKALHKFDD--GPFLLGQLSLVDIAYIPFVERAQIFLSEVIKYDI---T 105
K+A LE AL + G F + LVD+A + ++ +E + D
Sbjct: 129 KKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALGGVLSWMKV--TEALSGDKIFDA 186
Query: 106 AGRPKLAAWIEELNQVDAYK 125
A P LAAW+E ++DA K
Sbjct: 187 AKTPLLAAWVERFIELDAAK 206
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 5 IKYVDSNFEGPSLLPDDP-EK--RKFAEELF--------SYSDTFNITVYGSFKGDPAKE 53
+Y+D + G LLPDDP EK +K ELF S+ + N Y K + KE
Sbjct: 90 CEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKE 149
Query: 54 AGPCFDYLEKALHKFDDGPFLLGQLSLVDIAYIPFVERAQIF-LSEVIKYDITAGRPKLA 112
F LE+ L F +S++D P+ ER + L+E + + PKL
Sbjct: 150 ----FTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHT-----PKLK 200
Query: 113 AWIEELNQVDAYKQ--TKLKDPKGLVELY 139
W+ + + T KD +G +ELY
Sbjct: 201 LWMAAMKEDPTVSALLTSEKDWQGFLELY 229
>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In Complex
With Ascorbic Acid
Length = 241
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 23/149 (15%)
Query: 5 IKYVDSNFEGPSLLPDDP-EK--RKFAEELF--------SYSDTFNITVYGSFKGDPAKE 53
+Y+D + G LLPDDP EK +K ELF S+ + N Y K + KE
Sbjct: 90 CEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKE 149
Query: 54 AGPCFDYLEKALHKFDDGPFLLGQLSLVDIAYIPFVERAQIF-LSEVIKYDITAGRPKLA 112
F LE+ L F +S++D P+ ER + L+E + + PKL
Sbjct: 150 ----FTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHT-----PKLK 200
Query: 113 AWIEELNQVDAYKQ--TKLKDPKGLVELY 139
W+ + + T KD +G +ELY
Sbjct: 201 LWMAAMKEDPTVSALLTSEKDWQGFLELY 229
>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family
Member From Ricinus Communis, Target Efi-501866
Length = 223
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 11/151 (7%)
Query: 1 SLDLIKYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFNITVYGSF--KGDPAKEA-GPC 57
S +++Y+D + LLP DP +R A + + ++ F KG+ ++A C
Sbjct: 67 STIILEYLDETWPENPLLPSDPHERAVARFWVKFIEDKGTAIWNIFRTKGEELEKAVKNC 126
Query: 58 FDYL----EKALHKFDDGPFLLGQLSLVDIAYIPFVERAQIFLSEVIKYDITAGR--PKL 111
+ L E A+ DD F ++ +VDIA+ + + EV + + P+L
Sbjct: 127 LEVLKTIEEHAMGVSDDKYFGGDKIGIVDIAFCGIAHWLGV-IEEVAGVKVLESQKFPRL 185
Query: 112 AAWIEELNQVDAYKQTKLKDPKGLVELYKIR 142
AW E + K+ L D + +K R
Sbjct: 186 HAWTENFKEAPIIKEN-LPDRDQMTAFFKRR 215
>pdb|4HOJ|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Neisseria Gonorrhoeae, Target Efi-501841, With Bound
Glutathione
Length = 210
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Query: 6 KYVDSNFEGPSLLPDDPEKR--------KFAEELFSYSDTFNITVYGSFKGDPAKEA-GP 56
+Y+D F P L+P DP R + +ELF++ + + A+EA G
Sbjct: 70 EYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELFNHVQVLENPAAANKEQAKAREAIGN 129
Query: 57 CFDYLEKALHKFDDGPFLLGQ-LSLVDIAYIPFVERAQIFLSEVIKYDITAGRPK--LAA 113
L + F ++LG+ S++D+A P + R YD+ G+ L
Sbjct: 130 GLTMLSPS---FSKSKYILGEDFSMIDVALAPLLWRLD-------HYDVKLGKSAAPLLK 179
Query: 114 WIEELNQVDAY 124
+ E + Q +A+
Sbjct: 180 YAERIFQREAF 190
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 5 IKYVDSNFEGPSLLPDDP-EK--RKFAEELF--------SYSDTFNITVYGSFKGDPAKE 53
+Y+D + G LLPDDP EK +K ELF S+ + N Y K + KE
Sbjct: 90 CEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKE 149
Query: 54 AGPCFDYLEKALHKFDDGPFLLGQ-LSLVDIAYIPFVERAQIF-LSEVIKYDITAGRPKL 111
F LE +K F G +S++D P+ ER + L+E + + PKL
Sbjct: 150 ----FTKLEVLTNK--KTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHT-----PKL 198
Query: 112 AAWIEELNQVDAYKQ--TKLKDPKGLVELY 139
W+ + + T KD +G +ELY
Sbjct: 199 KLWMAAMKEDPTVSALLTSEKDWQGFLELY 228
>pdb|1FW1|A Chain A, Glutathione Transferase ZetaMALEYLACETOACETATE ISOMERASE
Length = 216
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 1 SLDLIKYVDSNFEGPSLLPDDPEKR---KFAEELFS--YSDTFNITVYGSFKGDP----A 51
SL +I+Y++ P LLP DP+KR + +L + N++V + A
Sbjct: 72 SLAIIEYLEETRPTPRLLPQDPKKRASVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWA 131
Query: 52 KEAGPC-FDYLEKALHKFDDGPFLLG-QLSLVDIAYIPFVERAQIFLSEVIKY 102
+ A C F+ LE+ L G + +G ++++ D+ +P V A+ F ++ Y
Sbjct: 132 QNAITCGFNALEQILQS-TAGIYCVGDEVTMADLCLVPQVANAERFKVDLTPY 183
>pdb|4AGS|A Chain A, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|B Chain B, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|C Chain C, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
Length = 471
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 64 ALHKFDDGPFLLG-QLSLVDIAYIPFVERAQIFLSEVI-KYDITAGRPKLAAWIE 116
A H F +GPF G + + D+A +PF+ RA+ F E YD+ A P L E
Sbjct: 385 AKHPFGEGPFFGGKRXNAGDVAILPFLVRAKAFXPEFSGGYDLFAHFPLLNGLAE 439
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 71 GPFLL-GQLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEELNQVDAYKQTKL 129
GP+ G+ + D+A +PF+ R + L YD+ P+ A Q + ++T
Sbjct: 168 GPYYCDGEFTXADVALVPFLVRLKPALXYYAGYDVFCKAPRXKALWAAAAQRASVRET-- 225
Query: 130 KDPKGLVELYKIRYMVP 146
P + R++VP
Sbjct: 226 -SPTAAQCIENYRHLVP 241
>pdb|2CZ2|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-1
Crystal)
pdb|2CZ3|A Chain A, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
pdb|2CZ3|B Chain B, Crystal Structure Of Glutathione Transferase Zeta 1-1
(Maleylacetoacetate Isomerase) From Mus Musculus (Form-2
Crystal)
Length = 223
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 1 SLDLIKYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTF--------NITVYGSFKGD--- 49
SL + +Y++ P LLP DP+KR + SD N++V +
Sbjct: 79 SLAIXEYLEETRPIPRLLPQDPQKRAIVRXI---SDLIASGIQPLQNLSVLKQVGQENQX 135
Query: 50 --PAKEAGPCFDYLEKALHKFDDGPFLLG-QLSLVDIAYIPFVERAQIF 95
K F+ LEK L G + +G ++S D+ +P V A+ F
Sbjct: 136 QWAQKVITSGFNALEKILQS-TAGKYCVGDEVSXADVCLVPQVANAERF 183
>pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) From Human
pdb|1LJR|B Chain B, Glutathione Transferase (Hgst T2-2) From Human
pdb|2LJR|A Chain A, Glutathione Transferase Apo-Form From Human
pdb|2LJR|B Chain B, Glutathione Transferase Apo-Form From Human
pdb|3LJR|A Chain A, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
pdb|3LJR|B Chain B, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
Length = 244
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 23/132 (17%)
Query: 1 SLDLIKYVDSNFEGP-SLLPDDPEKRKFAEELFSY-----SDTFNITVYGSFKGD----- 49
S ++ Y+ ++ P P D + R E + TF I ++ G
Sbjct: 67 SSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQ 126
Query: 50 -PAKEAGPCFDYLEKALHKFDDG-----PFLLGQ-LSLVDIAYIPFVERAQIFLSEVIKY 102
P ++ +++AL +D PFL GQ ++L D+ + ++ + Y
Sbjct: 127 VPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMAL-----EELMQPVALGY 181
Query: 103 DITAGRPKLAAW 114
++ GRP+LAAW
Sbjct: 182 ELFEGRPRLAAW 193
>pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Burkholderia Fungorum
Length = 432
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 84 AYIPFVERAQIFLSEVIKYDITAGRPKLAA 113
A+ P ER + +SEV +Y +GRP + A
Sbjct: 204 AHAPLAERVRAVMSEVRRYRERSGRPVMVA 233
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
Length = 347
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 51 AKEAGPCFDYLEKALHKFDDGPFLLGQLSL--VDIAYIPFVERAQIFLSEVIKYDITAG- 107
A E GP + LEKA H F L +L L + + P ER + + + G
Sbjct: 73 AVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRQVLGGF 132
Query: 108 RPKLAA----------WIEELNQVDAYKQ---TKLKDPK 133
R AA W++ L +V+A K+ T KD K
Sbjct: 133 RESRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEK 171
>pdb|1YY7|A Chain A, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
pdb|1YY7|B Chain B, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
Length = 213
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 4 LIKYVDSNFEGPSLLPDDPEKRKFAEELFSYSDTFNITVYGSFKGDPAKEAGPCFDYLEK 63
+++Y+D F P L+P P R + + + ++ + A+EA L +
Sbjct: 75 IMEYLDERFPHPPLMPVYPVARGSSRLMMHRIEHDWYSLLYKIEQGNAQEAEAARKQLRE 134
Query: 64 ALHK----FDDGPFLLG-QLSLVDIAYIPFVERAQIFLSEVIKYDITAGRPKLAAWIEEL 118
L F++ PF + + SLVD P + R + E AG +L ++ +
Sbjct: 135 ELLSIAPVFNETPFFMSEEFSLVDCYLAPLLWRLPVLGIEFTG----AGSKELKGYMTRV 190
Query: 119 NQVDAY 124
+ DA+
Sbjct: 191 FERDAF 196
>pdb|3OT6|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE
FAMILY PROTEIN From Psudomonas Syringae
Length = 232
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 95 FLSEVIKYDITAGRP-KLAAWIEELNQVDAYKQTKLKDPKGLVE 137
FL +V+ + G +AA ++++N +A+K+TKLK KGL++
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKINX-NAHKKTKLKVRKGLLD 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,080,474
Number of Sequences: 62578
Number of extensions: 212975
Number of successful extensions: 507
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 25
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)