BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036445
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 31/139 (22%)
Query: 96 NILLNSGFEAFFGNFGVARLLN-SDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
NILL+ FEA G+FG+A+L++ D + GT +IAP EK DV+ + +
Sbjct: 172 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGV 231
Query: 146 LSLFSSTPDPHITLT--------YILD--QRLSPPKKQKIVQDIALAS-----------I 184
+ L T L +LD + L KK + + D+ L
Sbjct: 232 MLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ 291
Query: 185 VGLACLQSKPKSVPTMQRV 203
V L C QS P P M V
Sbjct: 292 VALLCTQSSPMERPKMSEV 310
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 56 RIAFEEIIRATEDFDIKYCIGTGCYGSVYKARLPSGR-ICNNILLNSGFEAFFGNFGVAR 114
R + E+ A+++F K +G G +G VYK RL G + L + F
Sbjct: 27 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEV 86
Query: 115 LLNSDSSNRNLIAGTYRYIAP-EKCDVYSF----EILSLFSSTPDPHITLTYILDQRLSP 169
+ S + +RNL+ + P E+ VY + + S P+ L +
Sbjct: 87 EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDW-------- 138
Query: 170 PKKQKIVQDIALASIVGLACLQS 192
PK+Q+ IAL S GLA L
Sbjct: 139 PKRQR----IALGSARGLAYLHD 157
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 96 NILLNSGFEAFFGNFGVARLLN-SDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
NILL+ FEA G+FG+A+L++ D + G +IAP EK DV+ + +
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGV 223
Query: 146 LSLFSSTPDPHITL--------TYILD--QRLSPPKKQKIVQDIALAS-----------I 184
+ L T L +LD + L KK + + D+ L
Sbjct: 224 MLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ 283
Query: 185 VGLACLQSKPKSVPTMQRV 203
V L C QS P P M V
Sbjct: 284 VALLCTQSSPMERPKMSEV 302
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 56 RIAFEEIIRATEDFDIKYCIGTGCYGSVYKARLPSGR-ICNNILLNSGFEAFFGNFGVAR 114
R + E+ A+++F K +G G +G VYK RL G + L + F
Sbjct: 19 RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEV 78
Query: 115 LLNSDSSNRNLIAGTYRYIAP-EKCDVYSF----EILSLFSSTPDPHITLTYILDQRLSP 169
+ S + +RNL+ + P E+ VY + + S P+ L +
Sbjct: 79 EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDW-------- 130
Query: 170 PKKQKIVQDIALASIVGLACLQS 192
PK+Q+ IAL S GLA L
Sbjct: 131 PKRQR----IALGSARGLAYLHD 149
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + ++ GT YIAPE +SFE+
Sbjct: 171 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEV 222
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + ++ GT YIAPE +SFE+
Sbjct: 169 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEV 220
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + ++ GT YIAPE +SFE+
Sbjct: 144 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEV 196
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ E +FGVA L RN GT ++APE K D++S I
Sbjct: 134 NVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 193
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDIALASIVGLACLQSKPKSVPTMQ 201
++ + +P H L + +PP + L V ACL +P PT +
Sbjct: 194 AIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSK-PLKEFVE-ACLNKEPSFRPTAK 251
Query: 202 R-VSQEFIEQNESSSSIKTRC 221
+ +FI +N +S T
Sbjct: 252 ELLKHKFILRNAKKTSYLTEL 272
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDVYSF 143
N+ L+ G+FG+AR+LN D+S GT Y++PE+ + S+
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSY 193
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 67 EDFDIKYCIGTGCYGSVYKARLPS-GRI 93
ED+++ Y IGTG YG K R S G+I
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKI 33
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ E +FGVA L RN GT ++APE K D++S I
Sbjct: 134 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 193
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDIALASIVGLACLQSKPKSVPTMQ 201
++ + +P H L + +PP + L V ACL +P PT +
Sbjct: 194 AIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSK-PLKEFVE-ACLNKEPSFRPTAK 251
Query: 202 R-VSQEFIEQNESSSSIKTRC 221
+ +FI +N +S T
Sbjct: 252 ELLKHKFILRNAKKTSYLTEL 272
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ E +FGVA L RN GT ++APE K D++S I
Sbjct: 154 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 213
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDIALASIVGLACLQSKPKSVPTMQ 201
++ + +P H L + +PP + L V ACL +P PT +
Sbjct: 214 AIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSK-PLKEFVE-ACLNKEPSFRPTAK 271
Query: 202 R-VSQEFIEQNESSSSIKTRC 221
+ +FI +N +S T
Sbjct: 272 ELLKHKFILRNAKKTSYLTEL 292
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDVYSF 143
N+ L+ G+FG+AR+LN D+S GT Y++PE+ + S+
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSY 193
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 67 EDFDIKYCIGTGCYGSVYKARLPS-GRI 93
ED+++ Y IGTG YG K R S G+I
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKI 33
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ E +FGVA L RN GT ++APE K D++S I
Sbjct: 149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 208
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDIALASIVGLACLQSKPKSVPTMQ 201
++ + +P H L + +PP + L V ACL +P PT +
Sbjct: 209 AIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSK-PLKEFVE-ACLNKEPSFRPTAK 266
Query: 202 R-VSQEFIEQNESSSSIKTRC 221
+ +FI +N +S T
Sbjct: 267 ELLKHKFILRNAKKTSYLTEL 287
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 94 CNNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE 136
NILLN+ A +FGVA L + RN + GT ++APE
Sbjct: 153 AGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPE 195
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 67 EDFDIKYCIGTGCYGSVYKA 86
E FD+ +G G YGSVYKA
Sbjct: 29 EVFDVLEKLGEGSYGSVYKA 48
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 151 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEV 202
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 147 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEV 198
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDV--YSFEI 145
N+ LN E G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 147 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEV 198
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ + +FGVA L RN GT ++APE K D++S I
Sbjct: 150 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGIT 209
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDI--ALASIVGLACLQSKPKSVPT 199
++ + +P H L + +PP +V D + + ACL P PT
Sbjct: 210 AIELAKGEPPNSDMHPMRVLFLIPKNNPP---TLVGDFTKSFKEFID-ACLNKDPSFRPT 265
Query: 200 MQR-VSQEFIEQNESSSSIKTR 220
+ + +FI +N +S T
Sbjct: 266 AKELLKHKFIVKNSKKTSYLTE 287
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 35/149 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLN--SDSSNRNLIAGTYRYIAPE--------KCDVYSFEI 145
NILL+ F A +FG+AR + + + I GT Y+APE K D+YSF +
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGV 222
Query: 146 --LSLFSSTP------DPHITLTYI-------------LDQRLSPPKKQKIVQDIALASI 184
L + + P +P + L +D++++ + ++AS
Sbjct: 223 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVAS- 281
Query: 185 VGLACLQSKPKSVPTMQRVSQEFIEQNES 213
CL K P +++V Q E S
Sbjct: 282 ---QCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 47/232 (20%)
Query: 10 PIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGR-IAFEEIIRATED 68
P+ + +G L R+ A L QD + DGR + +++ +
Sbjct: 109 PVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLD--KEDGRPLELRDLLHFSSQ 166
Query: 69 F--DIKYCIGTGCYGSVYKARLPSGRICNNILLNSGFEAFFGNFGVARLLNSDSSNRNLI 126
+ + C AR N+LL +G A G+FG+AR + +DS+ ++
Sbjct: 167 VAQGMAFLASKNCIHRDVAAR--------NVLLTNGHVAKIGDFGLARDIMNDSN--YIV 216
Query: 127 AGTYR----YIAPE---------KCDVYSFEIL--SLFSSTPDPHITLTYILDQRLSPPK 171
G R ++APE + DV+S+ IL +FS +P+ + L K
Sbjct: 217 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI-------LVNSK 269
Query: 172 KQKIVQD--------IALASIVGL--ACLQSKPKSVPTMQRVSQEFIEQNES 213
K+V+D A +I + AC +P PT Q++ EQ +
Sbjct: 270 FYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 321
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYR----YIAPE---------KCDVYS 142
N+LL +G A G+FG+AR + +DS+ ++ G R ++APE + DV+S
Sbjct: 190 NVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWS 247
Query: 143 FEIL--SLFSSTPDPHITLTYILDQRLSPPKKQKIVQD--------IALASIVGL--ACL 190
+ IL +FS +P+ + L K K+V+D A +I + AC
Sbjct: 248 YGILLWEIFSLGLNPYPGI-------LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACW 300
Query: 191 QSKPKSVPTMQRVSQEFIEQNESS 214
+P PT Q++ EQ +
Sbjct: 301 ALEPTHRPTFQQICSFLQEQAQED 324
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 34/142 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYR----YIAPE---------KCDVYS 142
N+LL +G A G+FG+AR + +DS+ ++ G R ++APE + DV+S
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWS 251
Query: 143 FEIL--SLFSSTPDPHITLTYILDQRLSPPKKQKIVQD--------IALASIVGL--ACL 190
+ IL +FS +P+ + L K K+V+D A +I + AC
Sbjct: 252 YGILLWEIFSLGLNPYPGI-------LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACW 304
Query: 191 QSKPKSVPTMQRVSQEFIEQNE 212
+P PT Q++ EQ +
Sbjct: 305 ALEPTHRPTFQQICSFLQEQAQ 326
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 34/142 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYR----YIAPE---------KCDVYS 142
N+LL +G A G+FG+AR + +DS+ ++ G R ++APE + DV+S
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWS 251
Query: 143 FEIL--SLFSSTPDPHITLTYILDQRLSPPKKQKIVQD--------IALASIVGL--ACL 190
+ IL +FS +P+ + L K K+V+D A +I + AC
Sbjct: 252 YGILLWEIFSLGLNPYPGI-------LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACW 304
Query: 191 QSKPKSVPTMQRVSQEFIEQNE 212
+P PT Q++ EQ +
Sbjct: 305 ALEPTHRPTFQQICSFLQEQAQ 326
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEIL 146
N+LL+ + +FGVA L RN GT ++APE K D++S I
Sbjct: 146 NVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGIT 205
Query: 147 SLFSSTPDP-----HITLTYILDQRLSPPKKQKIVQDIALASIVGLACLQSKPKSVPTMQ 201
++ + +P H L + SPP + Q ACL P+ PT +
Sbjct: 206 AIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEG--QHSKPFKEFVEACLNKDPRFRPTAK 263
Query: 202 R-VSQEFIEQNESSSSIKT 219
+ +FI + +S T
Sbjct: 264 ELLKHKFITRYTKKTSFLT 282
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYR----YIAPE---------KCDVYS 142
N+LL +G A G+FG+AR + +DS+ ++ G R ++APE + DV+S
Sbjct: 182 NVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWS 239
Query: 143 FEIL--SLFSSTPDPHITLTYILDQRLSPPKKQKIVQD--------IALASIVGL--ACL 190
+ IL +FS +P+ + L K K+V+D A +I + AC
Sbjct: 240 YGILLWEIFSLGLNPYPGI-------LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACW 292
Query: 191 QSKPKSVPTMQRVSQEFIEQNESS 214
+P PT Q++ EQ +
Sbjct: 293 ALEPTHRPTFQQICSFLQEQAQED 316
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLN--SDSSNRNLIAGTYRYIAPE--------KCDVYSFEI 145
NILL+ F A +FG+AR + + I GT Y+APE K D+YSF +
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGV 222
Query: 146 --LSLFSSTP------DPHITLTYI-------------LDQRLSPPKKQKIVQDIALASI 184
L + + P +P + L +D++++ + ++AS
Sbjct: 223 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVAS- 281
Query: 185 VGLACLQSKPKSVPTMQRVSQEFIEQNES 213
CL K P +++V Q E S
Sbjct: 282 ---QCLHEKKNKRPDIKKVQQLLQEMTAS 307
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKC--DVYSFEI 145
N+ LN + G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEV 223
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDVYSF 143
N+ L+ G+FG+AR+LN D GT Y++PE+ + S+
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSY 193
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 67 EDFDIKYCIGTGCYGSVYKARLPS-GRI 93
ED+++ Y IGTG YG K R S G+I
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKI 33
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKC--DVYSFEI 145
N+ LN + G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEV 223
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 34/140 (24%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYR----YIAPE---------KCDVYS 142
N+LL +G A G+FG+AR + +DS+ ++ G R ++APE + DV+S
Sbjct: 196 NVLLTNGHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWS 253
Query: 143 FEIL--SLFSSTPDPHITLTYILDQRLSPPKKQKIVQD--------IALASIVGL--ACL 190
+ IL +FS +P+ + L K K+V+D A +I + AC
Sbjct: 254 YGILLWEIFSLGLNPYPGI-------LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACW 306
Query: 191 QSKPKSVPTMQRVSQEFIEQ 210
+P PT Q++ EQ
Sbjct: 307 ALEPTHRPTFQQICSFLQEQ 326
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 35/149 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLN--SDSSNRNLIAGTYRYIAPE--------KCDVYSFEI 145
NILL+ F A +FG+AR + I GT Y+APE K D+YSF +
Sbjct: 157 NILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGV 216
Query: 146 --LSLFSSTP------DPHITLTYI-------------LDQRLSPPKKQKIVQDIALASI 184
L + + P +P + L +D++++ + ++AS
Sbjct: 217 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVAS- 275
Query: 185 VGLACLQSKPKSVPTMQRVSQEFIEQNES 213
CL K P +++V Q E S
Sbjct: 276 ---QCLHEKKNKRPDIKKVQQLLQEMTAS 301
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKC--DVYSFEI 145
N+ LN + G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEV 223
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 56 RIAFEEIIRATEDFDIKYCIGTGCYGSVYKARLPSG 91
R+ ++ AT +FD K+ IG G +G VYK L G
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG 63
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
Length = 327
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 56 RIAFEEIIRATEDFDIKYCIGTGCYGSVYKARLPSG 91
R+ ++ AT +FD K+ IG G +G VYK L G
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG 63
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKC--DVYSFEI 145
N+ LN + G+FG+A + D + + GT YIAPE +SFE+
Sbjct: 155 GNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEV 207
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 96 NILLNSGFEAFFGNFGVARLLN--SDSSNRNLIAGTYRYIAPE--------KCDVYSFEI 145
NILL+ F A +FG+AR + + I GT Y APE K D+YSF +
Sbjct: 154 NILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGV 213
Query: 146 --LSLFSSTP------DPHITLTYI-------------LDQRLSPPKKQKIVQDIALASI 184
L + + P +P + L +D++ + + ++AS
Sbjct: 214 VLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADSTSVEAXYSVAS- 272
Query: 185 VGLACLQSKPKSVPTMQRVSQEFIEQNES 213
CL K P +++V Q E S
Sbjct: 273 ---QCLHEKKNKRPDIKKVQQLLQEXTAS 298
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEKCD 139
NI L G+FG+AR+LNS GT Y++PE C+
Sbjct: 154 QNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICE 198
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 96 NILLNSGFEAFFGNFGVARLL-NSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
NIL+ +G +FG+ARL+ +++ + R ++ APE K DV+SF I
Sbjct: 135 NILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 194
Query: 146 L--SLFSS--TPDPHITLTYILDQRLSPPKKQKIVQD--IALASIVGLACLQSKPKSVPT 199
L L + P P + +L+Q + + QD I+L ++ + C + P+ PT
Sbjct: 195 LLTELVTKGRVPYPGMNNREVLEQ-VERGYRMPCPQDCPISLHELM-IHCWKKDPEERPT 252
Query: 200 MQRVSQEFIE 209
+ + Q F+E
Sbjct: 253 FEYL-QSFLE 261
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 139 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 182
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 136 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 179
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 138 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 181
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 137 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 180
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 202
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 166 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 209
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 204
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 143 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 186
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 202
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 204
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 162 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 205
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 202
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 204
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 204
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPE 202
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 204
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 164 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 207
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 158 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPE 201
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE 204
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 162 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE 205
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E NFG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 139 ENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 146 L 146
L
Sbjct: 197 L 197
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E NFG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEIL 146
N+L++ + +FG++RL S AGT ++AP EK DVYSF ++
Sbjct: 169 NLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 67 EDFDIKYC-------IGTGCYGSVYKARLPSGRICNNILLNSGFEA 105
+D DI +C IG G +G+V++A + IL+ F A
Sbjct: 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA 75
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDS--SNRNLIAGTYRYIAPE 136
NILLN +FG A++L+ +S + N GT +Y++PE
Sbjct: 158 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPE 201
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEIL 146
N+L++ + +FG++RL S + AGT ++AP EK DVYSF ++
Sbjct: 169 NLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 67 EDFDIKYC-------IGTGCYGSVYKARLPSGRICNNILLNSGFEA 105
+D DI +C IG G +G+V++A + IL+ F A
Sbjct: 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHA 75
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE--KCD 139
N+LL E +FGV+ L+ RN GT ++APE CD
Sbjct: 158 QNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACD 204
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R+ + GT Y+ P EK D++S +
Sbjct: 138 ENLLLGSAGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 146 L 146
L
Sbjct: 196 L 196
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
+NILL +FG + + S R+ + GT ++APE K D++S I
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 205
Query: 146 LSL 148
+++
Sbjct: 206 MAI 208
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
+NILL +FG + + S R+ + GT ++APE K D++S I
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 146 LSL 148
+++
Sbjct: 205 MAI 207
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R+ + GT Y+ P EK D++S +
Sbjct: 141 ENLLLGSNGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 146 L 146
L
Sbjct: 199 L 199
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 67 EDFDIKYCIGTGCYGSVYKAR 87
EDFDI +G G +G+VY AR
Sbjct: 12 EDFDIGRPLGKGKFGNVYLAR 32
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
+NILL +FG + + S R+ + GT ++APE K D++S I
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 205
Query: 146 LSL 148
+++
Sbjct: 206 MAI 208
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
+NILL +FG + + S R+ + GT ++APE K D++S I
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 146 LSL 148
+++
Sbjct: 205 MAI 207
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPEK---------CDVYSFEI 145
+NIL+NS E +FGV+ L + +N GT Y++PE+ D++S
Sbjct: 137 SNILVNSRGEIKLCDFGVSGQLIDEMANE--FVGTRSYMSPERLQGTHYSVQSDIWSMG- 193
Query: 146 LSLFSST----PDPHITLTYILDQRLS--PPKKQKIVQDIALASIVGLACLQSKPKSVPT 199
LSL P P + + +LD ++ PPK V + V +++ +
Sbjct: 194 LSLVEMAVGRYPRPPMAIFELLDYIVNEPPPKLPSAVFSLEFQDFVNKCLIKNPAERADL 253
Query: 200 MQRVSQEFIEQNESSS 215
Q + FI+++++
Sbjct: 254 KQLMVHAFIKRSDAEE 269
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 6 TIIFPIAAFVAFLAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRA 65
T+ PI + +G L R +KR + + EI+ +++ + FE+++
Sbjct: 119 TLSGPIYLIFEYCCYGDLLNYLR-SKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLC- 176
Query: 66 TEDFDIKYCIGTGCYGSVYKARLPSGRICNNILLNSGFEAFFGNFGVARLLNSDSSNRNL 125
Y + G +K+ + N+L+ G +FG+AR + SDS+ +
Sbjct: 177 -----FAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN--YV 229
Query: 126 IAGTYR----YIAPE---------KCDVYSFEIL--SLFSSTPDPH 156
+ G R ++APE K DV+S+ IL +FS +P+
Sbjct: 230 VRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY 275
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 141 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 146 L 146
L
Sbjct: 199 L 199
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 136 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 193
Query: 146 L 146
L
Sbjct: 194 L 194
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKYCIGTGCYG 81
T R +N +L+ E++ +DAF +WS + F I + D +I + G
Sbjct: 11 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQGEADINIAFYQRDHGDG 70
Query: 82 SVYKARLPSGRICNNILLNSGFEAFFGNFGVARLLNSDSSNRNLI 126
S + P+G + + G +F + S+N NL
Sbjct: 71 SPFDG--PNGILAHAFQPGQGIGG-DAHFDAEETWTNTSANYNLF 112
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 146 L 146
L
Sbjct: 200 L 200
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 134 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 191
Query: 146 L 146
L
Sbjct: 192 L 192
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 146 L 146
L
Sbjct: 200 L 200
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEIL 146
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +L
Sbjct: 164 NLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 221
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R+ + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGV 199
Query: 146 L 146
L
Sbjct: 200 L 200
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAPE---------KCDVYSFEI 145
+NILL +FG + + S R+ + GT ++APE K D++S I
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 146 LSL 148
+++
Sbjct: 205 MAI 207
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEIL 146
N+LL S E +FG + +++ SS R+ + GT Y+ P EK D++S +L
Sbjct: 164 NLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 221
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 141 ENLLLGSNGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 146 L 146
L
Sbjct: 199 L 199
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 67 EDFDIKYCIGTGCYGSVYKAR 87
EDFDI +G G +G+VY AR
Sbjct: 12 EDFDIGRPLGKGKFGNVYLAR 32
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 96 NILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEIL 146
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +L
Sbjct: 155 NLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 212
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 139 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 146 L 146
L
Sbjct: 197 L 197
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo
Proteinase-8 (Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With
T Catalitic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Non- Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A
Non- Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Non- Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Non- Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A
Non- Zinc Chelating Inhibitor
Length = 163
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKY 73
T R +N +L+ E++ +DAF +WS + F I + D +I +
Sbjct: 12 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAF 63
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKY 73
T R +N +L+ E++ +DAF +WS + F I + D +I +
Sbjct: 13 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAF 64
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + ++ SS R ++GT Y+ P EK D++S +
Sbjct: 138 ENLLLGSAGELKIADFGWS--CHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 146 L 146
L
Sbjct: 196 L 196
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNL--IAGTYRYIAPE------------KCDV 140
NNI L+ G G+FG+A + + S ++ + G+ ++APE + DV
Sbjct: 161 NNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDV 220
Query: 141 YSFEIL 146
YS+ I+
Sbjct: 221 YSYGIV 226
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKY 73
T R +N +L+ E++ +DAF +WS + F I + D +I +
Sbjct: 13 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAF 64
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 108 GNFGVARLLNSDSSNRNLIAGTYRYIAPEKCDVYSFEILSLFSSTPDPHITLTYILDQRL 167
G+ GV +L + +N +I GT P++ E+L LF S P P ++ + +++
Sbjct: 2064 GDVGV--VLETMGTNDTVIGGTL----PQRI-ASCLEVLDLFLSQPHPVLSSFVLAEKKA 2116
Query: 168 SPPKKQKIVQDI--ALASIVGL 187
+ P+ +D+ A+A I+G+
Sbjct: 2117 AAPRDGSSQKDLVKAVAHILGI 2138
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKY 73
T R +N +L+ E++ +DAF +WS + F I + D +I +
Sbjct: 8 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAF 59
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 94 CNNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAG---TYRYIAPE---------KCDVY 141
NIL+NS +FG++R+L D +G R+ APE DV+
Sbjct: 175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVW 234
Query: 142 SFEIL 146
SF I+
Sbjct: 235 SFGIV 239
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 146 L 146
L
Sbjct: 198 L 198
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 TLFLLRRKNKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKY 73
T R +N +L+ E++ +DAF +WS + F I + D +I +
Sbjct: 7 TNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAF 58
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae
pdb|1CI0|B Chain B, Pnp Oxidase From Saccharomyces Cerevisiae
Length = 228
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 86 ARLPSGRICNNILL-----NSGFEAFFGNFGVARLLNSDSSNRN 124
A LPSGR+ + ILL + GF + N+G +R + ++N N
Sbjct: 63 AELPSGRVSSRILLFKELDHRGF-TIYSNWGTSRKAHDIATNPN 105
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 146 L 146
L
Sbjct: 195 L 195
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 138 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 146 L 146
L
Sbjct: 196 L 196
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIAGTYRYIAP---------EKCDVYSFEI 145
N+LL S E +FG + +++ SS R + GT Y+ P EK D++S +
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 146 L 146
L
Sbjct: 200 L 200
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type
Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type
Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 ATEDFDIKYCIGTGCYGSVYKARLP 89
AT ++ IG G YG+VYKAR P
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDP 26
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 ATEDFDIKYCIGTGCYGSVYKARLP 89
AT ++ IG G YG+VYKAR P
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDP 31
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type
Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 ATEDFDIKYCIGTGCYGSVYKARLP 89
AT ++ IG G YG+VYKAR P
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDP 26
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type
Cyclin
Length = 306
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 ATEDFDIKYCIGTGCYGSVYKARLP 89
AT ++ IG G YG+VYKAR P
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDP 26
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 63 IRATEDFDIKYCIGTGCYGSVYKA 86
++ ++++IK+ IG G YG VY A
Sbjct: 24 VKVPDNYEIKHLIGRGSYGYVYLA 47
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 95 NNILLNSGFEAFFGNFGVARLLNSDSSNRNLIA-GTYRYIAPE 136
+NILL+ +FG L +D + R+L+A GT Y++PE
Sbjct: 191 DNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPE 233
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 67 EDFDIKYCIGTGCYGSVYKARLPSGR 92
E+F++ +GTG YG V+ R SG
Sbjct: 54 ENFELLKVLGTGAYGKVFLVRKISGH 79
>pdb|4HFV|A Chain A, Crystal Structure Of Lpg1851 Protein From Legionella
Pneumophila (Putative T4ss Effector)
Length = 190
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 113 ARLLNSDSSN-RNLIAGTYRYIAPEKCDVYSFEILSL 148
AR+LN+ + R+ IA TY+Y +P+ D Y +SL
Sbjct: 74 ARVLNALAYYIRDQIAATYKYTSPDNSDFYKSLTISL 110
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 30 NKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKYCIGTGCYGSVY 84
N + LT+ E ++ R AF++WS ++F ++ + DIK G +G Y
Sbjct: 19 NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQ-ADIKIKWEKGNHGDGY 72
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 30 NKRAELTSGEIKSQDRDAFSIWSCDGRIAFEEIIRATEDFDIKYCIGTGCYGSVY 84
N + LT+ E ++ R AF++WS ++F ++ + DIK G +G Y
Sbjct: 19 NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQ-ADIKIKWEKGNHGDGY 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,099,861
Number of Sequences: 62578
Number of extensions: 244039
Number of successful extensions: 1026
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 170
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)