Query 036447
Match_columns 338
No_of_seqs 134 out of 1132
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-53 3.7E-58 406.0 32.7 310 1-323 37-362 (362)
2 PLN03146 aspartyl protease fam 100.0 3.1E-49 6.7E-54 384.6 33.0 287 1-333 139-431 (431)
3 cd05472 cnd41_like Chloroplast 100.0 3.4E-47 7.4E-52 354.7 31.3 266 20-330 34-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 4.3E-44 9.3E-49 346.1 29.2 291 1-331 102-397 (398)
5 cd05476 pepsin_A_like_plant Ch 100.0 3.1E-42 6.6E-47 316.0 26.0 234 20-330 31-265 (265)
6 cd05475 nucellin_like Nucellin 100.0 2.3E-41 5E-46 311.5 27.7 229 19-330 39-273 (273)
7 cd05486 Cathespin_E Cathepsin 100.0 9.7E-42 2.1E-46 320.4 25.3 266 2-321 32-316 (316)
8 cd05478 pepsin_A Pepsin A, asp 100.0 1.7E-41 3.7E-46 318.9 25.2 262 1-321 41-317 (317)
9 cd05490 Cathepsin_D2 Cathepsin 100.0 2.4E-41 5.1E-46 318.9 25.5 252 17-321 61-325 (325)
10 cd05477 gastricsin Gastricsins 100.0 7E-41 1.5E-45 314.8 27.2 266 1-321 34-317 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 3.4E-41 7.3E-46 317.3 24.4 261 1-321 41-320 (320)
12 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.3E-41 1.8E-45 315.4 25.2 252 1-331 58-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 7.6E-40 1.6E-44 307.7 26.1 256 2-321 42-317 (317)
14 cd05474 SAP_like SAPs, pepsin- 100.0 4.8E-40 1E-44 305.6 22.9 248 21-321 31-294 (295)
15 cd05485 Cathepsin_D_like Cathe 100.0 1.9E-39 4.2E-44 306.4 25.3 252 16-321 65-329 (329)
16 PTZ00165 aspartyl protease; Pr 100.0 2.7E-39 5.9E-44 317.1 26.7 262 2-323 152-447 (482)
17 cd05487 renin_like Renin stimu 100.0 3.2E-39 6.9E-44 304.6 25.8 261 6-321 46-325 (326)
18 cd05473 beta_secretase_like Be 100.0 1.8E-38 3.8E-43 303.9 26.1 273 14-333 49-350 (364)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.9E-38 4.2E-43 308.3 26.4 263 1-323 169-449 (450)
20 PTZ00147 plasmepsin-1; Provisi 100.0 1.9E-38 4.2E-43 308.8 25.4 263 1-323 170-450 (453)
21 cd06097 Aspergillopepsin_like 100.0 1.4E-35 3.1E-40 273.7 22.4 214 18-321 55-278 (278)
22 cd05471 pepsin_like Pepsin-lik 100.0 7E-34 1.5E-38 261.7 24.0 223 15-321 53-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.9E-34 8.5E-39 267.9 16.9 250 17-321 55-316 (317)
24 PF14541 TAXi_C: Xylanase inhi 100.0 2E-30 4.3E-35 220.4 14.5 158 162-321 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.8 1.2E-19 2.6E-24 154.5 11.4 115 1-124 46-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.6 2E-07 4.2E-12 73.4 7.4 57 17-84 52-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 92.6 0.52 1.1E-05 37.9 6.9 24 295-318 100-123 (124)
28 TIGR02281 clan_AA_DTGA clan AA 91.2 0.49 1.1E-05 37.9 5.2 36 160-213 9-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 90.8 2.2 4.7E-05 33.3 8.4 24 294-317 84-107 (107)
30 PF13650 Asp_protease_2: Aspar 88.9 0.66 1.4E-05 34.2 4.0 21 193-213 11-31 (90)
31 cd05484 retropepsin_like_LTR_2 87.2 0.95 2.1E-05 34.0 4.0 30 169-213 4-33 (91)
32 PF08284 RVP_2: Retroviral asp 86.7 3.5 7.5E-05 33.7 7.3 27 295-321 105-131 (135)
33 PF13975 gag-asp_proteas: gag- 84.4 1.9 4.2E-05 30.9 4.3 30 169-213 12-41 (72)
34 cd05483 retropepsin_like_bacte 84.2 2.2 4.7E-05 31.7 4.7 21 193-213 15-35 (96)
35 cd06095 RP_RTVL_H_like Retrope 81.6 2.2 4.7E-05 31.7 3.7 20 194-213 12-31 (86)
36 PF00077 RVP: Retroviral aspar 74.5 3.4 7.4E-05 31.3 3.1 27 168-209 8-34 (100)
37 cd05481 retropepsin_like_LTR_1 72.4 4.8 0.0001 30.5 3.3 21 193-213 12-32 (93)
38 COG3577 Predicted aspartyl pro 67.6 13 0.00029 32.4 5.4 36 160-213 103-138 (215)
39 PF12384 Peptidase_A2B: Ty3 tr 65.7 34 0.00073 29.0 7.2 21 193-213 47-67 (177)
40 PF09668 Asp_protease: Asparty 63.4 11 0.00023 30.4 3.8 30 169-213 28-57 (124)
41 cd05483 retropepsin_like_bacte 62.9 14 0.0003 27.2 4.2 52 20-86 43-94 (96)
42 COG5550 Predicted aspartyl pro 49.2 13 0.00027 29.8 2.0 21 193-213 28-49 (125)
43 PF02160 Peptidase_A3: Caulifl 44.1 61 0.0013 28.4 5.6 53 249-321 65-117 (201)
44 cd00303 retropepsin_like Retro 31.7 81 0.0018 21.3 3.9 21 193-213 11-31 (92)
45 cd06097 Aspergillopepsin_like 24.8 67 0.0015 29.1 2.9 16 193-208 15-30 (278)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-53 Score=405.97 Aligned_cols=310 Identities=51% Similarity=0.863 Sum_probs=240.9
Q ss_pred CCCccccCcCCCC------------CCCCCCcceeee-cCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecc
Q 036447 1 RCGSAQCNLANAK------------ACGGGICGAGVN-NPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGS 67 (338)
Q Consensus 1 ~C~s~~C~~~~~~------------~C~~~~C~~~i~-Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~ 67 (338)
+|+++.|+.++.+ .|.++.|.|... |+ +|+.++|++++|+|+|+..++.... .++++++.|||++
T Consensus 37 ~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~-~gs~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~ 114 (362)
T cd05489 37 PCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV-TGECATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAP 114 (362)
T ss_pred CcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-cCcEeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCC
Confidence 6999999876532 577788999766 76 8999999999999999875432111 1368899999998
Q ss_pred cccccCCCCCcceEEecCCCCCchHHHHhhhcCCCceeEEecCCCCCCCceeEEECCCCCcCCC-CcCCCCCeeeecccc
Q 036447 68 EFVLQGLANGVVGIAGLGRSKVALPLQLAAAFSFDRKFAICLSPAFPRTNGVIIFGDGPYVLSP-NVDVSKSLTYTPLFI 146 (338)
Q Consensus 68 ~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p-~~~~~~~~~~~pl~~ 146 (338)
.+.+.+.....+||||||++++|+++||..++..+++|||||++.. ...|+|+||+.+..+.+ ..+.++.+.||||+.
T Consensus 115 ~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~-~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~ 193 (362)
T cd05489 115 SLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSP-GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLT 193 (362)
T ss_pred cccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCC-CCCeeEEECCCchhcccccccccCCcccccccc
Confidence 8643344456899999999999999999887666789999998753 45899999998842100 001247899999997
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447 147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 226 (338)
++. ...+|.|+|++|+||++.+.+++..+.....+.+++||||||++|+||+++|++|+++|.+++....+
T Consensus 194 ~~~---------~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~ 264 (362)
T cd05489 194 NPR---------KSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPR 264 (362)
T ss_pred CCC---------CCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCc
Confidence 642 24789999999999999998866554433345678999999999999999999999999998864332
Q ss_pred cCCC-CCCcccccccccccCCCCCCcCcEEEEEcC-CeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEccccee
Q 036447 227 VAPV-APLGACFKSSDIVSSRFGPSVPPIDLVLQN-NVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLE 304 (338)
Q Consensus 227 ~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g-g~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~ 304 (338)
.... ...+.||+............+|+|+|+|+| |++|+|+|++|++++ .++.+|++|...+....+.||||+.|||
T Consensus 265 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~-~~~~~Cl~f~~~~~~~~~~~IlG~~~~~ 343 (362)
T cd05489 265 VPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQV-KGGVACLAFVDGGSEPRPAVVIGGHQME 343 (362)
T ss_pred CCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEc-CCCcEEEEEeeCCCCCCceEEEeeheec
Confidence 2221 113699986532211223579999999997 799999999999987 5568999998765422457999999999
Q ss_pred ceEEEEeCCCCeEEEEecc
Q 036447 305 NNLLQFDLPSSRLGFSNSL 323 (338)
Q Consensus 305 ~~~vvfD~~~~rIGfa~~~ 323 (338)
++||+||++++|||||+++
T Consensus 344 ~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 344 DNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred ceEEEEECCCCEeecccCC
Confidence 9999999999999999764
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.1e-49 Score=384.62 Aligned_cols=287 Identities=26% Similarity=0.457 Sum_probs=230.2
Q ss_pred CCCccccCcCCCC-CCC-CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCC-CC
Q 036447 1 RCGSAQCNLANAK-ACG-GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLA-NG 77 (338)
Q Consensus 1 ~C~s~~C~~~~~~-~C~-~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~-~~ 77 (338)
+|+++.|+.++.. .|. ++.|.|.+.|+ ||+.+.|.+++|+|+|++..+. .++++++.|||++.+ .+.+ ..
T Consensus 139 ~C~s~~C~~~~~~~~c~~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~~----~~~v~~~~FGc~~~~--~g~f~~~ 211 (431)
T PLN03146 139 SCDSSQCQALGNQASCSDENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSGR----PVSFPGIVFGCGHNN--GGTFDEK 211 (431)
T ss_pred CCCCcccccCCCCCCCCCCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCCC----cceeCCEEEeCCCCC--CCCccCC
Confidence 5999999887653 476 45799999998 9999999999999999875321 246889999999877 4433 35
Q ss_pred cceEEecCCCCCchHHHHhhhcCCCceeEEecCCCC--CCCceeEEECCCCCcCCCCcCCC-CCeeeeccccCCCCCCCC
Q 036447 78 VVGIAGLGRSKVALPLQLAAAFSFDRKFAICLSPAF--PRTNGVIIFGDGPYVLSPNVDVS-KSLTYTPLFINPVNTESG 154 (338)
Q Consensus 78 ~~GIlGLg~~~~s~~~ql~~~~~i~~~FS~cl~~~~--~~~~G~l~fGg~d~~~~p~~~~~-~~~~~~pl~~~~~~~~~~ 154 (338)
.+||||||++++|+++||... +.++|||||.+.. ....|+|+||+.. ++. ..+.||||+.+.
T Consensus 212 ~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~-------~~~~~~~~~tPl~~~~------ 276 (431)
T PLN03146 212 GSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNA-------IVSGSGVVSTPLVSKD------ 276 (431)
T ss_pred CceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCcc-------ccCCCCceEcccccCC------
Confidence 899999999999999999764 3469999997532 2358999999853 233 358999998642
Q ss_pred CCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCc
Q 036447 155 FLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLG 234 (338)
Q Consensus 155 ~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~ 234 (338)
.+.+|.|.|++|+||++.+.++...+. ..+.+++||||||++|+||+++|++|+++|.+++...+.......++
T Consensus 277 ----~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 350 (431)
T PLN03146 277 ----PDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLS 350 (431)
T ss_pred ----CCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCC
Confidence 247899999999999999887765543 13346899999999999999999999999999886422222233467
Q ss_pred ccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCC
Q 036447 235 ACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPS 314 (338)
Q Consensus 235 ~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~ 314 (338)
.||+.... ..+|+|+|+|+| ++++|+|++|+++. ..+..|+++.... +.||||+.|||++||+||+++
T Consensus 351 ~C~~~~~~------~~~P~i~~~F~G-a~~~l~~~~~~~~~-~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~ 418 (431)
T PLN03146 351 LCYSSTSD------IKLPIITAHFTG-ADVKLQPLNTFVKV-SEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLES 418 (431)
T ss_pred ccccCCCC------CCCCeEEEEECC-CeeecCcceeEEEc-CCCcEEEEEecCC----CceEECeeeEeeEEEEEECCC
Confidence 99985421 368999999985 99999999999987 5567899987643 369999999999999999999
Q ss_pred CeEEEEeccCccccCCCCc
Q 036447 315 SRLGFSNSLLFQRTVCDNF 333 (338)
Q Consensus 315 ~rIGfa~~~~~~~~~C~~~ 333 (338)
+||||| +++|+++
T Consensus 419 ~~igFa------~~~C~~~ 431 (431)
T PLN03146 419 KTVSFK------PTDCTKM 431 (431)
T ss_pred CEEeee------cCCcCcC
Confidence 999999 6999864
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.4e-47 Score=354.66 Aligned_cols=266 Identities=29% Similarity=0.519 Sum_probs=214.0
Q ss_pred cceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCCchHHHHhhhc
Q 036447 20 CGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKVALPLQLAAAF 99 (338)
Q Consensus 20 C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~ 99 (338)
|.|.+.|+ ||+.++|.+++|+|+|++.. .++++.|||+..+ ++.+...+||||||+..+|++.|+..+.
T Consensus 34 ~~~~i~Yg-~Gs~~~G~~~~D~v~ig~~~--------~~~~~~Fg~~~~~--~~~~~~~~GilGLg~~~~s~~~ql~~~~ 102 (299)
T cd05472 34 CLYQVSYG-DGSYTTGDLATDTLTLGSSD--------VVPGFAFGCGHDN--EGLFGGAAGLLGLGRGKLSLPSQTASSY 102 (299)
T ss_pred CeeeeEeC-CCceEEEEEEEEEEEeCCCC--------ccCCEEEECCccC--CCccCCCCEEEECCCCcchHHHHhhHhh
Confidence 99999998 99999999999999998741 5788999999877 4444478999999999999999987653
Q ss_pred CCCceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeec
Q 036447 100 SFDRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPL 179 (338)
Q Consensus 100 ~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~ 179 (338)
+++||+||++......|+|+||++|. . .+++.|+||+.++. ...+|.|+|++|+|+++.+.+
T Consensus 103 --~~~FS~~L~~~~~~~~G~l~fGg~d~------~-~g~l~~~pv~~~~~---------~~~~y~v~l~~i~vg~~~~~~ 164 (299)
T cd05472 103 --GGVFSYCLPDRSSSSSGYLSFGAAAS------V-PAGASFTPMLSNPR---------VPTFYYVGLTGISVGGRRLPI 164 (299)
T ss_pred --cCceEEEccCCCCCCCceEEeCCccc------c-CCCceECCCccCCC---------CCCeEEEeeEEEEECCEECCC
Confidence 48999999874224589999999994 2 68999999987642 246899999999999998875
Q ss_pred CCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCCCCcCcEEEEEc
Q 036447 180 NTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQ 259 (338)
Q Consensus 180 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~ 259 (338)
++.. .....+|||||||+++||+++|++|.+++.+++...++......++.||+.++... ..+|+|+|+|+
T Consensus 165 ~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~----~~~P~i~f~f~ 235 (299)
T cd05472 165 PPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRS----VSVPTVSLHFQ 235 (299)
T ss_pred Cccc-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcC----CccCCEEEEEC
Confidence 4211 12367999999999999999999999999987653322222233446997654322 57999999998
Q ss_pred CCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEeccCccccCC
Q 036447 260 NNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSNSLLFQRTVC 330 (338)
Q Consensus 260 gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~~~~~~~C 330 (338)
++++|+|+|++|++.....+..|+++...+.. .+.+|||+.|||++|+|||++++||||| +.+|
T Consensus 236 ~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~~vvfD~~~~~igfa------~~~C 299 (299)
T cd05472 236 GGADVELDASGVLYPVDDSSQVCLAFAGTSDD-GGLSIIGNVQQQTFRVVYDVAGGRIGFA------PGGC 299 (299)
T ss_pred CCCEEEeCcccEEEEecCCCCEEEEEeCCCCC-CCCEEEchHHccceEEEEECCCCEEeEe------cCCC
Confidence 66999999999998543456789988765322 3579999999999999999999999999 5777
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-44 Score=346.14 Aligned_cols=291 Identities=31% Similarity=0.462 Sum_probs=233.3
Q ss_pred CCCccccCcCCCCCCCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCC-CCcc
Q 036447 1 RCGSAQCNLANAKACGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLA-NGVV 79 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~-~~~~ 79 (338)
.|.++.|.......|.++.|.|.+.|| |++.++|++++|+|+|++.+ .+.++++.|||+..+...+.. ...+
T Consensus 102 ~c~~~~c~~~~~~~~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~d 174 (398)
T KOG1339|consen 102 GCSSPRCKSLPQSCSPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFD 174 (398)
T ss_pred CCCCccccccccCcccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccc
Confidence 488999998875544589999999998 99999999999999999842 126778999999988432112 4689
Q ss_pred eEEecCCCCCchHHHHhhhcCCCceeEEecCCCCCC--CceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCC
Q 036447 80 GIAGLGRSKVALPLQLAAAFSFDRKFAICLSPAFPR--TNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLG 157 (338)
Q Consensus 80 GIlGLg~~~~s~~~ql~~~~~i~~~FS~cl~~~~~~--~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~ 157 (338)
||||||+.++|+++|+...+...++||+||.+.... .+|.|+||+.|. .++.+.+.|+||+.++
T Consensus 175 GIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~-----~~~~~~l~~tPl~~~~--------- 240 (398)
T KOG1339|consen 175 GILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDS-----SHYTGSLTYTPLLSNP--------- 240 (398)
T ss_pred eEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcc-----cCcCCceEEEeeccCC---------
Confidence 999999999999999998776667899999987422 589999999995 3677889999999863
Q ss_pred CCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccc
Q 036447 158 DPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACF 237 (338)
Q Consensus 158 ~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~ 237 (338)
..+|.|++.+|+|+++. .++...+..+ .+++||||||++++||+++|++|+++|.+++. .. ......+..|+
T Consensus 241 --~~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~-~~~~~~~~~C~ 312 (398)
T KOG1339|consen 241 --STYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-VV-GTDGEYFVPCF 312 (398)
T ss_pred --CccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee-cc-ccCCceeeecc
Confidence 25999999999999987 6655555422 47899999999999999999999999999741 00 01123457999
Q ss_pred cccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeE-EEEEEeCCCCCCCceEEcccceeceEEEEeCC-CC
Q 036447 238 KSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVS-CLGFVDGGVRPMTSIVIGGHQLENNLLQFDLP-SS 315 (338)
Q Consensus 238 ~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~-Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~-~~ 315 (338)
...... ..+|+|+|+|.+|+.|.+++++|++++ ..+.. |+++...... .+.||||+.||++++++||.. ++
T Consensus 313 ~~~~~~-----~~~P~i~~~f~~g~~~~l~~~~y~~~~-~~~~~~Cl~~~~~~~~-~~~~ilG~~~~~~~~~~~D~~~~~ 385 (398)
T KOG1339|consen 313 SISTSG-----VKLPDITFHFGGGAVFSLPPKNYLVEV-SDGGGVCLAFFNGMDS-GPLWILGDVFQQNYLVVFDLGENS 385 (398)
T ss_pred cCCCCc-----ccCCcEEEEECCCcEEEeCccceEEEE-CCCCCceeeEEecCCC-CceEEEchHHhCCEEEEEeCCCCC
Confidence 875321 349999999997799999999999998 33323 9988766542 158999999999999999999 99
Q ss_pred eEEEEeccCccccCCC
Q 036447 316 RLGFSNSLLFQRTVCD 331 (338)
Q Consensus 316 rIGfa~~~~~~~~~C~ 331 (338)
|||||+.+ ..|+
T Consensus 386 riGfa~~~----~~c~ 397 (398)
T KOG1339|consen 386 RVGFAPAL----TNCS 397 (398)
T ss_pred EEEecccc----ccCC
Confidence 99999754 5564
No 5
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.1e-42 Score=316.04 Aligned_cols=234 Identities=31% Similarity=0.547 Sum_probs=195.4
Q ss_pred cceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCCchHHHHhhhc
Q 036447 20 CGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKVALPLQLAAAF 99 (338)
Q Consensus 20 C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~ 99 (338)
|.|.+.|+ |++.++|++++|+|+|++.. .+++++.|||++.+.. ......+||||||+...|++.||..++
T Consensus 31 ~~~~~~Y~-dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 CSYEYSYG-DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred CceEeEeC-CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc
Confidence 99999997 99999999999999999852 1578899999998732 224578999999999999999998765
Q ss_pred CCCceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEee
Q 036447 100 SFDRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIP 178 (338)
Q Consensus 100 ~i~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~ 178 (338)
++||+||++.. ....|+|+||++|. . +.+++.|+|++.++. ...+|.|.|++|+|+++.+.
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~-----~-~~~~l~~~p~~~~~~---------~~~~~~v~l~~i~v~~~~~~ 163 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAAD-----L-GGSGVVYTPLVKNPA---------NPTYYYVNLEGISVGGKRLP 163 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCccc-----c-cCCCceEeecccCCC---------CCCceEeeeEEEEECCEEec
Confidence 79999998742 25689999999994 2 678999999987631 24789999999999999987
Q ss_pred cCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCCCCcCcEEEEE
Q 036447 179 LNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVL 258 (338)
Q Consensus 179 ~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 258 (338)
++++.+.........+||||||++++||+++| |+|+|+|
T Consensus 164 ~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~-----------------------------------------P~i~~~f 202 (265)
T cd05476 164 IPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY-----------------------------------------PDLTLHF 202 (265)
T ss_pred CCchhcccccCCCCcEEEeCCCcceEcCcccc-----------------------------------------CCEEEEE
Confidence 65433322223346899999999999999987 7799999
Q ss_pred cCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEeccCccccCC
Q 036447 259 QNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSNSLLFQRTVC 330 (338)
Q Consensus 259 ~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~~~~~~~C 330 (338)
+++.+|.|++++|+++. ..+..|+++..... .+.||||+.|||++|++||++++||||| +++|
T Consensus 203 ~~~~~~~i~~~~y~~~~-~~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa------~~~C 265 (265)
T cd05476 203 DGGADLELPPENYFVDV-GEGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFA------PADC 265 (265)
T ss_pred CCCCEEEeCcccEEEEC-CCCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeee------cCCC
Confidence 86699999999999976 56789999887632 4689999999999999999999999999 5777
No 6
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.3e-41 Score=311.55 Aligned_cols=229 Identities=24% Similarity=0.374 Sum_probs=187.6
Q ss_pred CcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC--CCCCcceEEecCCCCCchHHHHh
Q 036447 19 ICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG--LANGVVGIAGLGRSKVALPLQLA 96 (338)
Q Consensus 19 ~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~ 96 (338)
.|.|++.|+ |++.++|.+++|+|+|+..++. ..++++.|||+..+.... .....+||||||+++++++.||.
T Consensus 39 ~c~~~i~Yg-d~~~~~G~~~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 QCDYEIEYA-DGGSSMGVLVTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred cCccEeEeC-CCCceEEEEEEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 799999997 9999999999999999865432 256789999997652111 12468999999999999999999
Q ss_pred hhcCCCceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeE
Q 036447 97 AAFSFDRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKA 176 (338)
Q Consensus 97 ~~~~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~ 176 (338)
.++.++++||+||++. .+|.|+||+.. ++.+++.|+||..++ ...+|.|++.+|+||++.
T Consensus 113 ~~~~i~~~Fs~~l~~~---~~g~l~~G~~~-------~~~g~i~ytpl~~~~----------~~~~y~v~l~~i~vg~~~ 172 (273)
T cd05475 113 SQGIIKNVIGHCLSSN---GGGFLFFGDDL-------VPSSGVTWTPMRRES----------QKKHYSPGPASLLFNGQP 172 (273)
T ss_pred hcCCcCceEEEEccCC---CCeEEEECCCC-------CCCCCeeecccccCC----------CCCeEEEeEeEEEECCEE
Confidence 8877788999999873 47999999532 356789999998753 147999999999999985
Q ss_pred eecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCCCCcCcEEE
Q 036447 177 IPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFGPSVPPIDL 256 (338)
Q Consensus 177 i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f 256 (338)
+.. +...+||||||++++||+++| +|+|+|
T Consensus 173 ~~~----------~~~~~ivDTGTt~t~lp~~~y----------------------------------------~p~i~~ 202 (273)
T cd05475 173 TGG----------KGLEVVFDSGSSYTYFNAQAY----------------------------------------FKPLTL 202 (273)
T ss_pred CcC----------CCceEEEECCCceEEcCCccc----------------------------------------cccEEE
Confidence 321 135799999999999999886 388999
Q ss_pred EEcCC---eEEEEecCCeEEEEcCCCeEEEEEEeCCCC-CCCceEEcccceeceEEEEeCCCCeEEEEeccCccccCC
Q 036447 257 VLQNN---VSWSIIGANSIVRVNNNDVSCLGFVDGGVR-PMTSIVIGGHQLENNLLQFDLPSSRLGFSNSLLFQRTVC 330 (338)
Q Consensus 257 ~f~gg---~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~-~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~~~~~~~C 330 (338)
+|+++ ++|+|+|++|++.. ..+..|+++...... ..+.||||+.|||++|+|||++++||||| +++|
T Consensus 203 ~f~~~~~~~~~~l~~~~y~~~~-~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa------~~~C 273 (273)
T cd05475 203 KFGKGWRTRLLEIPPENYLIIS-EKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWV------RSDC 273 (273)
T ss_pred EECCCCceeEEEeCCCceEEEc-CCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcc------cCCC
Confidence 99864 79999999999876 456789988754331 23579999999999999999999999999 5777
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.7e-42 Score=320.40 Aligned_cols=266 Identities=17% Similarity=0.184 Sum_probs=204.6
Q ss_pred CCccccCcCCCCC------CCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-
Q 036447 2 CGSAQCNLANAKA------CGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL- 74 (338)
Q Consensus 2 C~s~~C~~~~~~~------C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~- 74 (338)
|.+..|...+.+. |....|.|++.|+ +| .+.|.+++|+|+|++. +++++.|||+..+....+
T Consensus 32 C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg-~g-~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~ 100 (316)
T cd05486 32 CTSQACTKHNRFQPSESSTYVSNGEAFSIQYG-TG-SLTGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQ 100 (316)
T ss_pred CCCcccCccceECCCCCcccccCCcEEEEEeC-Cc-EEEEEeeecEEEECCE---------EEcCEEEEEeeccCccccc
Confidence 7667776554333 3466899999998 77 5899999999999875 788999999876621112
Q ss_pred CCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447 75 ANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI 146 (338)
Q Consensus 75 ~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~ 146 (338)
....+||||||++.++ +..+|..++.+ +++||+||++.. ....|+|+||++|. .++.+++.|+|+..
T Consensus 101 ~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pi~~ 175 (316)
T cd05486 101 DSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDT-----SRFSGQLNWVPVTV 175 (316)
T ss_pred ccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCH-----HHcccceEEEECCC
Confidence 2468999999997655 46678877777 689999998642 23579999999994 47789999999864
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447 147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 226 (338)
..+|.|.+++|+|+++.+.... ...+||||||+++++|++++++|.+++.+..
T Consensus 176 -------------~~~w~v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~----- 228 (316)
T cd05486 176 -------------QGYWQIQLDNIQVGGTVIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA----- 228 (316)
T ss_pred -------------ceEEEEEeeEEEEecceEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----
Confidence 3789999999999998764321 2579999999999999999999877764321
Q ss_pred cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCC--CCCceEEcccc
Q 036447 227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVR--PMTSIVIGGHQ 302 (338)
Q Consensus 227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~--~~~~~ILG~~f 302 (338)
..+ .....|... ..+|+|+|+|+| ++++|+|++|++... .++..|+ ++...+.. .++.||||++|
T Consensus 229 ~~~-~~~~~C~~~---------~~~p~i~f~f~g-~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~f 297 (316)
T cd05486 229 TDG-EYGVDCSTL---------SLMPSVTFTING-IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVF 297 (316)
T ss_pred cCC-cEEEecccc---------ccCCCEEEEECC-EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHH
Confidence 111 112366543 368999999975 999999999998742 2356898 56654321 23579999999
Q ss_pred eeceEEEEeCCCCeEEEEe
Q 036447 303 LENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 303 l~~~~vvfD~~~~rIGfa~ 321 (338)
||++|+|||.+++|||||+
T Consensus 298 lr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 298 IRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred hcceEEEEeCCCCEeeccC
Confidence 9999999999999999994
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.7e-41 Score=318.86 Aligned_cols=262 Identities=16% Similarity=0.185 Sum_probs=205.6
Q ss_pred CCCccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC
Q 036447 1 RCGSAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL 74 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~ 74 (338)
.|.+..|...+.+.+. ...|.|.+.|+ +|+ +.|.+++|+|+|++. .++++.|||++.+.....
T Consensus 41 ~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg-~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~ 109 (317)
T cd05478 41 YCSSQACSNHNRFNPRQSSTYQSTGQPLSIQYG-TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFF 109 (317)
T ss_pred CCCcccccccCcCCCCCCcceeeCCcEEEEEEC-Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCcccc
Confidence 3777777655544442 45789999998 776 799999999999985 788999999976621111
Q ss_pred -CCCcceEEecCCCCC------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447 75 -ANGVVGIAGLGRSKV------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI 146 (338)
Q Consensus 75 -~~~~~GIlGLg~~~~------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~ 146 (338)
....+||||||++.+ +++.||.+++.| +++||+||++.. ...|+|+||++|. .++.+++.|+|+..
T Consensus 110 ~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~g~l~~Gg~d~-----~~~~g~l~~~p~~~ 183 (317)
T cd05478 110 YYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG-QQGSVVTFGGIDP-----SYYTGSLNWVPVTA 183 (317)
T ss_pred ccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC-CCCeEEEEcccCH-----HHccCceEEEECCC
Confidence 235899999998754 377889888888 689999999753 3579999999984 36789999999864
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447 147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 226 (338)
..+|.|.+++|+|+++.+.... +..+||||||++++||+++|++|.+++.+....
T Consensus 184 -------------~~~w~v~l~~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~--- 238 (317)
T cd05478 184 -------------ETYWQITVDSVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQ--- 238 (317)
T ss_pred -------------CcEEEEEeeEEEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCcccc---
Confidence 4789999999999999875321 357999999999999999999998887543211
Q ss_pred cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEcccceec
Q 036447 227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLEN 305 (338)
Q Consensus 227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~ 305 (338)
. ......|++. ..+|+|+|+|+| ++|+|+|++|+.+. ...|+ ++...+. ...||||+.|||+
T Consensus 239 -~-~~~~~~C~~~---------~~~P~~~f~f~g-~~~~i~~~~y~~~~---~~~C~~~~~~~~~--~~~~IlG~~fl~~ 301 (317)
T cd05478 239 -N-GEMVVNCSSI---------SSMPDVVFTING-VQYPLPPSAYILQD---QGSCTSGFQSMGL--GELWILGDVFIRQ 301 (317)
T ss_pred -C-CcEEeCCcCc---------ccCCcEEEEECC-EEEEECHHHheecC---CCEEeEEEEeCCC--CCeEEechHHhcc
Confidence 1 1112367643 358999999965 99999999998764 56898 5665443 3579999999999
Q ss_pred eEEEEeCCCCeEEEEe
Q 036447 306 NLLQFDLPSSRLGFSN 321 (338)
Q Consensus 306 ~~vvfD~~~~rIGfa~ 321 (338)
+|+|||++++|||||+
T Consensus 302 ~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 302 YYSVFDRANNKVGLAP 317 (317)
T ss_pred eEEEEeCCCCEEeecC
Confidence 9999999999999994
No 9
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.4e-41 Score=318.94 Aligned_cols=252 Identities=18% Similarity=0.221 Sum_probs=195.7
Q ss_pred CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-CCCcceEEecCCCCCc-----
Q 036447 17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-ANGVVGIAGLGRSKVA----- 90 (338)
Q Consensus 17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-~~~~~GIlGLg~~~~s----- 90 (338)
...|.|.+.|+ +|+ ++|.+++|+|+|++. +++++.|||++.+....+ ....+||||||++.++
T Consensus 61 ~~~~~~~i~Yg-~G~-~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 129 (325)
T cd05490 61 KNGTEFAIQYG-SGS-LSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVT 129 (325)
T ss_pred eCCcEEEEEEC-CcE-EEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCC
Confidence 45789999998 775 799999999999985 788999999987621111 2468999999997654
Q ss_pred -hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEE
Q 036447 91 -LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGV 167 (338)
Q Consensus 91 -~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l 167 (338)
+..+|..++.+ +++||+||++.. ....|+|+||++|. .++.+++.|+|+.. ..+|.|.|
T Consensus 130 ~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~-----~~~~g~l~~~~~~~-------------~~~w~v~l 191 (325)
T cd05490 130 PVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP-----KYYTGDLHYVNVTR-------------KAYWQIHM 191 (325)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCH-----HHcCCceEEEEcCc-------------ceEEEEEe
Confidence 45678877777 789999998642 23479999999984 46789999999864 37899999
Q ss_pred EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCC
Q 036447 168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRF 247 (338)
Q Consensus 168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 247 (338)
++|+|+++..... ....+||||||+++++|+++|++|.+++.+. +.... .....|.+.
T Consensus 192 ~~i~vg~~~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~-~~~~~C~~~-------- 249 (325)
T cd05490 192 DQVDVGSGLTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG-EYMIDCEKI-------- 249 (325)
T ss_pred eEEEECCeeeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC-CEEeccccc--------
Confidence 9999998643211 1357999999999999999999998887532 11111 223567643
Q ss_pred CCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCCC--CCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 248 GPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGVR--PMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 248 ~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
..+|+|+|+|+| ++|+|+|++|+++... +...|+ ++...+.. ....||||++|||++|+|||++++|||||+
T Consensus 250 -~~~P~i~f~fgg-~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 250 -PTLPVISFSLGG-KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred -ccCCCEEEEECC-EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 358999999965 9999999999987632 346898 56653321 235799999999999999999999999994
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=7e-41 Score=314.83 Aligned_cols=266 Identities=15% Similarity=0.192 Sum_probs=207.9
Q ss_pred CCCccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC
Q 036447 1 RCGSAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL 74 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~ 74 (338)
.|.+..|...+.+.++ ...|.|++.|+ +|+ +.|.+++|+|+|++. +++++.|||++......+
T Consensus 34 ~C~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg-~Gs-~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~ 102 (318)
T cd05477 34 LCQSQACTNHTKFNPSQSSTYSTNGETFSLQYG-SGS-LTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNF 102 (318)
T ss_pred CCCCccccccCCCCcccCCCceECCcEEEEEEC-CcE-EEEEEEeeEEEECCE---------EEcCEEEEEEEecccccc
Confidence 3777788766555443 56799999998 775 799999999999975 889999999987621111
Q ss_pred -CCCcceEEecCCCC------CchHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447 75 -ANGVVGIAGLGRSK------VALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI 146 (338)
Q Consensus 75 -~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~ 146 (338)
....+||||||++. .+++.||..++.| +++||+||++......|.|+||++|. .++.+++.|+|+..
T Consensus 103 ~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pv~~ 177 (318)
T cd05477 103 VYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDN-----NLYTGQIYWTPVTS 177 (318)
T ss_pred cccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCH-----HHcCCceEEEecCC
Confidence 24579999999853 4578899988877 78999999875324579999999984 36789999999864
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447 147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 226 (338)
..+|.|.+++|+|+++.+.+.. ....+||||||++++||+++|++|.+.+.++...
T Consensus 178 -------------~~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~--- 233 (318)
T cd05477 178 -------------ETYWQIGIQGFQINGQATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ--- 233 (318)
T ss_pred -------------ceEEEEEeeEEEECCEEecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc---
Confidence 3799999999999998875422 1256999999999999999999999888655321
Q ss_pred cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCC---CCCCceEEcccc
Q 036447 227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGV---RPMTSIVIGGHQ 302 (338)
Q Consensus 227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~---~~~~~~ILG~~f 302 (338)
.. .....|... ..+|+|+|+|++ ++++|+|++|++.. +..|+ ++..... ...+.||||+.|
T Consensus 234 -~~-~~~~~C~~~---------~~~p~l~~~f~g-~~~~v~~~~y~~~~---~~~C~~~i~~~~~~~~~~~~~~ilG~~f 298 (318)
T cd05477 234 -YG-QYVVNCNNI---------QNLPTLTFTING-VSFPLPPSAYILQN---NGYCTVGIEPTYLPSQNGQPLWILGDVF 298 (318)
T ss_pred -CC-CEEEeCCcc---------ccCCcEEEEECC-EEEEECHHHeEecC---CCeEEEEEEecccCCCCCCceEEEcHHH
Confidence 11 112356643 358999999975 99999999999864 45797 7764321 113579999999
Q ss_pred eeceEEEEeCCCCeEEEEe
Q 036447 303 LENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 303 l~~~~vvfD~~~~rIGfa~ 321 (338)
||++|++||++++|||||+
T Consensus 299 l~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 299 LRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred hhheEEEEeCCCCEEeeee
Confidence 9999999999999999996
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.4e-41 Score=317.25 Aligned_cols=261 Identities=18% Similarity=0.250 Sum_probs=201.5
Q ss_pred CCCccccCcCCCCCC------CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC
Q 036447 1 RCGSAQCNLANAKAC------GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL 74 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C------~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~ 74 (338)
+|.+..|...+.+.| ..+.|.|.+.|+ +|+ ++|.+++|+|+|++. +++++.|||++.+ .+.
T Consensus 41 ~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~a~~~--~g~ 107 (320)
T cd05488 41 KCGSIACFLHSKYDSSASSTYKANGTEFKIQYG-SGS-LEGFVSQDTLSIGDL---------TIKKQDFAEATSE--PGL 107 (320)
T ss_pred CCCCcccCCcceECCCCCcceeeCCCEEEEEEC-Cce-EEEEEEEeEEEECCE---------EECCEEEEEEecC--CCc
Confidence 477777875544444 357899999997 775 899999999999875 7889999999766 332
Q ss_pred ---CCCcceEEecCCCCCchH------HHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecc
Q 036447 75 ---ANGVVGIAGLGRSKVALP------LQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPL 144 (338)
Q Consensus 75 ---~~~~~GIlGLg~~~~s~~------~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl 144 (338)
....+||||||++..+.. .+|..++.| +++||+||++.. ...|+|+||++|. .++.++++|+|+
T Consensus 108 ~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~-~~~G~l~fGg~d~-----~~~~g~l~~~p~ 181 (320)
T cd05488 108 AFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE-EDGGEATFGGIDE-----SRFTGKITWLPV 181 (320)
T ss_pred ceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC-CCCcEEEECCcCH-----HHcCCceEEEeC
Confidence 246799999999876543 356667777 789999999753 4589999999984 367899999999
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCC
Q 036447 145 FINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNV 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 224 (338)
+. ..+|.|.+++|+||++.+... +..++|||||++++||++++++|.+.+.+....
T Consensus 182 ~~-------------~~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~- 237 (320)
T cd05488 182 RR-------------KAYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSW- 237 (320)
T ss_pred Cc-------------CcEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCcccc-
Confidence 74 368999999999999876543 246999999999999999999988877433210
Q ss_pred cccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEE-EEeCCCC--CCCceEEccc
Q 036447 225 TRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLG-FVDGGVR--PMTSIVIGGH 301 (338)
Q Consensus 225 ~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~-~~~~~~~--~~~~~ILG~~ 301 (338)
.. .....|.+. ..+|+|+|+|+| ++++|+|++|+++. ...|+. +...+.. .++.||||+.
T Consensus 238 ---~~-~~~~~C~~~---------~~~P~i~f~f~g-~~~~i~~~~y~~~~---~g~C~~~~~~~~~~~~~~~~~ilG~~ 300 (320)
T cd05488 238 ---NG-QYTVDCSKV---------DSLPDLTFNFDG-YNFTLGPFDYTLEV---SGSCISAFTGMDFPEPVGPLAIVGDA 300 (320)
T ss_pred ---CC-cEEeecccc---------ccCCCEEEEECC-EEEEECHHHheecC---CCeEEEEEEECcCCCCCCCeEEEchH
Confidence 11 111356542 368999999975 99999999999854 347985 4432211 1347999999
Q ss_pred ceeceEEEEeCCCCeEEEEe
Q 036447 302 QLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 302 fl~~~~vvfD~~~~rIGfa~ 321 (338)
|||++|+|||.+++|||||+
T Consensus 301 fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 301 FLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred HhhheEEEEeCCCCEEeecC
Confidence 99999999999999999994
No 12
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.3e-41 Score=315.36 Aligned_cols=252 Identities=21% Similarity=0.320 Sum_probs=188.7
Q ss_pred CCCccccCcCCCCCCCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcce
Q 036447 1 RCGSAQCNLANAKACGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVG 80 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~G 80 (338)
+|+++.|.. ...|.++.|.|.+.|+ ||+.+.|.+++|+|+|++....+ ......++.|||+..+.........+|
T Consensus 58 ~C~~~~c~~--~~~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~--~~~~~~~~~fg~~~~~~~~~~~~~~~G 132 (326)
T cd06096 58 YCDCNKCCY--CLSCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSN--SEKESFKKIFGCHTHETNLFLTQQATG 132 (326)
T ss_pred cCCCccccc--cCcCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCc--cccccccEEeccCccccCcccccccce
Confidence 477777742 2456778899999998 99899999999999998752110 000112578999988732122356899
Q ss_pred EEecCCCCCc-hH---HHHhhhcCC---CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCC----------CCeeeec
Q 036447 81 IAGLGRSKVA-LP---LQLAAAFSF---DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVS----------KSLTYTP 143 (338)
Q Consensus 81 IlGLg~~~~s-~~---~ql~~~~~i---~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~----------~~~~~~p 143 (338)
|||||+...+ .. .++..+..+ +++||+||++. .|+|+||++|.. ++. +++.|+|
T Consensus 133 ilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~~----~G~l~~Gg~d~~-----~~~~~~~~~~~~~~~~~~~p 203 (326)
T cd06096 133 ILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSED----GGELTIGGYDKD-----YTVRNSSIGNNKVSKIVWTP 203 (326)
T ss_pred EEEccCCcccccCchhHHHHHhcccccCCceEEEEEcCC----CeEEEECccChh-----hhcccccccccccCCceEEe
Confidence 9999998643 22 123233322 38999999864 699999999952 333 7899999
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCC
Q 036447 144 LFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPN 223 (338)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~ 223 (338)
+.. ..+|.|.+++|+|+++...... .....+||||||++++||+++|++|.+++
T Consensus 204 ~~~-------------~~~y~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~------ 257 (326)
T cd06096 204 ITR-------------KYYYYVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF------ 257 (326)
T ss_pred ccC-------------CceEEEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc------
Confidence 874 3789999999999998611110 12367999999999999999999987654
Q ss_pred CcccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccce
Q 036447 224 VTRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQL 303 (338)
Q Consensus 224 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl 303 (338)
|+|+|+|++|+.++++|++|+++. .....|+++.... +.+|||++||
T Consensus 258 ----------------------------P~i~~~f~~g~~~~i~p~~y~~~~-~~~~c~~~~~~~~----~~~ILG~~fl 304 (326)
T cd06096 258 ----------------------------PTITIIFENNLKIDWKPSSYLYKK-ESFWCKGGEKSVS----NKPILGASFF 304 (326)
T ss_pred ----------------------------CcEEEEEcCCcEEEECHHHhcccc-CCceEEEEEecCC----CceEEChHHh
Confidence 789999986699999999999876 3334455554432 4799999999
Q ss_pred eceEEEEeCCCCeEEEEeccCccccCCC
Q 036447 304 ENNLLQFDLPSSRLGFSNSLLFQRTVCD 331 (338)
Q Consensus 304 ~~~~vvfD~~~~rIGfa~~~~~~~~~C~ 331 (338)
|++|+|||++++||||| +++|.
T Consensus 305 r~~y~vFD~~~~riGfa------~~~C~ 326 (326)
T cd06096 305 KNKQIIFDLDNNRIGFV------ESNCP 326 (326)
T ss_pred cCcEEEEECcCCEEeeE------cCCCC
Confidence 99999999999999999 58884
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7.6e-40 Score=307.66 Aligned_cols=256 Identities=16% Similarity=0.232 Sum_probs=196.6
Q ss_pred CC-ccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-
Q 036447 2 CG-SAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG- 73 (338)
Q Consensus 2 C~-s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~- 73 (338)
|. +..|...+.+.++ ...+.+++.|+ +|+ ++|.+++|+|+|++. +++++.|||++.+....
T Consensus 42 C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg-~G~-~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~ 110 (317)
T cd06098 42 CYFSIACYFHSKYKSSKSSTYKKNGTSASIQYG-TGS-ISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTF 110 (317)
T ss_pred CCCCccccccCcCCcccCCCcccCCCEEEEEcC-Cce-EEEEEEeeEEEECCE---------EECCEEEEEEEecCCccc
Confidence 53 3467654444443 45678999997 665 799999999999975 78899999998652111
Q ss_pred CCCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447 74 LANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF 145 (338)
Q Consensus 74 ~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~ 145 (338)
.....+||||||++..+ +..+|..++.+ +++||+||++.. ....|+|+||++|. .++.+++.|+|++
T Consensus 111 ~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~pv~ 185 (317)
T cd06098 111 LLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP-----KHFKGEHTYVPVT 185 (317)
T ss_pred cccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccCh-----hhcccceEEEecC
Confidence 12468999999997654 34567777767 679999998642 23589999999984 4788999999996
Q ss_pred cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447 146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT 225 (338)
Q Consensus 146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~ 225 (338)
. ..+|.|.+++|+|+++.+..... ...+||||||+++++|++++++|.
T Consensus 186 ~-------------~~~w~v~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~----------- 233 (317)
T cd06098 186 R-------------KGYWQFEMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN----------- 233 (317)
T ss_pred c-------------CcEEEEEeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh-----------
Confidence 4 36899999999999988654321 256999999999999999876653
Q ss_pred ccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCC--CCCCceEEccc
Q 036447 226 RVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGV--RPMTSIVIGGH 301 (338)
Q Consensus 226 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~--~~~~~~ILG~~ 301 (338)
....|+.. ..+|+|+|+|+| +.++|+|++|+++... ....|+ ++...+. ..++.||||++
T Consensus 234 ------~~~~C~~~---------~~~P~i~f~f~g-~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~ 297 (317)
T cd06098 234 ------SAVDCNSL---------SSMPNVSFTIGG-KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDV 297 (317)
T ss_pred ------ccCCcccc---------ccCCcEEEEECC-EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechH
Confidence 12468754 358999999965 9999999999987622 245898 5654332 12357999999
Q ss_pred ceeceEEEEeCCCCeEEEEe
Q 036447 302 QLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 302 fl~~~~vvfD~~~~rIGfa~ 321 (338)
|||++|+|||++++|||||+
T Consensus 298 Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 298 FMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HhcccEEEEeCCCCEEeecC
Confidence 99999999999999999994
No 14
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.8e-40 Score=305.62 Aligned_cols=248 Identities=17% Similarity=0.230 Sum_probs=200.5
Q ss_pred ceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC-----------
Q 036447 21 GAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV----------- 89 (338)
Q Consensus 21 ~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~----------- 89 (338)
.|++.|+ +|+.+.|.+++|+|+|++. +++++.|||++.. ...+||||||+...
T Consensus 31 ~~~~~Y~-~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~ 94 (295)
T cd05474 31 DFSISYG-DGTSASGTWGTDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYP 94 (295)
T ss_pred eeEEEec-cCCcEEEEEEEEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCC
Confidence 6899998 9899999999999999975 7889999999875 25789999999776
Q ss_pred chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEE
Q 036447 90 ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVK 168 (338)
Q Consensus 90 s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~ 168 (338)
+++.||..++.+ +++||+||++.. ...|.|+||++|. .++.+++.|+|++.++.. ....+|.|.++
T Consensus 95 s~~~~L~~~g~i~~~~Fsl~l~~~~-~~~g~l~~Gg~d~-----~~~~g~~~~~p~~~~~~~-------~~~~~~~v~l~ 161 (295)
T cd05474 95 NFPIALKKQGLIKKNAYSLYLNDLD-ASTGSILFGGVDT-----AKYSGDLVTLPIVNDNGG-------SEPSELSVTLS 161 (295)
T ss_pred CHHHHHHHCCcccceEEEEEeCCCC-CCceeEEEeeecc-----ceeeceeEEEeCcCcCCC-------CCceEEEEEEE
Confidence 688999988877 689999999753 4589999999985 367889999999875310 01378999999
Q ss_pred EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCC
Q 036447 169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFG 248 (338)
Q Consensus 169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 248 (338)
+|+|+++.+..+.. .+...+||||||++++||+++|++|.+++.+..... .......|+..
T Consensus 162 ~i~v~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~~--------- 222 (295)
T cd05474 162 SISVNGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDAK--------- 222 (295)
T ss_pred EEEEEcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCCC---------
Confidence 99999988653211 224689999999999999999999999987765321 11223577753
Q ss_pred CCcCcEEEEEcCCeEEEEecCCeEEEEcC---CCeEEE-EEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 249 PSVPPIDLVLQNNVSWSIIGANSIVRVNN---NDVSCL-GFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 249 ~~~P~i~f~f~gg~~~~i~~~~yl~~~~~---~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
.. |+|+|+|+| ++++|++++|+++... .+..|+ ++...+. +.||||+.|||++|++||.+++|||||+
T Consensus 223 ~~-p~i~f~f~g-~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 223 DD-GSLTFNFGG-ATISVPLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred CC-CEEEEEECC-eEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 23 999999976 9999999999987621 357885 7776553 5799999999999999999999999996
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.9e-39 Score=306.38 Aligned_cols=252 Identities=19% Similarity=0.245 Sum_probs=195.7
Q ss_pred CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeeccccccc-CCCCCcceEEecCCCCCc----
Q 036447 16 GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQ-GLANGVVGIAGLGRSKVA---- 90 (338)
Q Consensus 16 ~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~-~~~~~~~GIlGLg~~~~s---- 90 (338)
....|.|.+.|+ +|+ +.|.+++|+|+|++. +++++.|||+..+... ......+||||||++.+|
T Consensus 65 ~~~~~~~~i~Y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 133 (329)
T cd05485 65 KKNGTEFAIQYG-SGS-LSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGV 133 (329)
T ss_pred EECCeEEEEEEC-Cce-EEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCC
Confidence 356799999998 776 899999999999975 7889999999766211 112468999999998765
Q ss_pred --hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEE
Q 036447 91 --LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIG 166 (338)
Q Consensus 91 --~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~ 166 (338)
+..||.+++.+ +++||+||++.. ....|+|+||++|. .++.++++|+|+.. ..+|.|.
T Consensus 134 ~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~-------------~~~~~v~ 195 (329)
T cd05485 134 VPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP-----KHYTGNFTYLPVTR-------------KGYWQFK 195 (329)
T ss_pred CCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH-----HHcccceEEEEcCC-------------ceEEEEE
Confidence 35688888777 689999998643 13579999999984 36789999999864 3789999
Q ss_pred EEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCC
Q 036447 167 VKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSR 246 (338)
Q Consensus 167 l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 246 (338)
++++.|+++.+.. ....+||||||++++||+++|++|.+++.+.. . ........|...
T Consensus 196 ~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~--~---~~~~~~~~C~~~------- 253 (329)
T cd05485 196 MDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP--I---IGGEYMVNCSAI------- 253 (329)
T ss_pred eeEEEECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc--c---cCCcEEEecccc-------
Confidence 9999999986531 12469999999999999999999888775421 1 111112466542
Q ss_pred CCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCC--CCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 247 FGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGV--RPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 247 ~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~--~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
..+|+|+|+|++ ++++|+|++|+++... +...|+ ++...+. ..++.||||+.|||++|+|||++++|||||.
T Consensus 254 --~~~p~i~f~fgg-~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 254 --PSLPDITFVLGG-KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred --ccCCcEEEEECC-EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 358999999975 9999999999998732 346898 5665321 1235799999999999999999999999983
No 16
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.7e-39 Score=317.07 Aligned_cols=262 Identities=16% Similarity=0.205 Sum_probs=201.6
Q ss_pred CCccccCcCCCCCCC------C--CC---cceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeeccccc
Q 036447 2 CGSAQCNLANAKACG------G--GI---CGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFV 70 (338)
Q Consensus 2 C~s~~C~~~~~~~C~------~--~~---C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~ 70 (338)
|.+..|...+.+.++ . +. ..+.++|| +| ++.|++++|+|+|++. +++++.|||++.+.
T Consensus 152 C~~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YG-sG-s~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s 220 (482)
T PTZ00165 152 CKSGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYG-TG-ECVLALGKDTVKIGGL---------KVKHQSIGLAIEES 220 (482)
T ss_pred cCcccccccCCCCccccCCcEecCCCCccceEEEEeC-CC-cEEEEEEEEEEEECCE---------EEccEEEEEEEecc
Confidence 777778765544442 2 22 25779998 66 5779999999999985 88999999998763
Q ss_pred ccCC-CCCcceEEecCCCCC---------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCC--CC
Q 036447 71 LQGL-ANGVVGIAGLGRSKV---------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDV--SK 137 (338)
Q Consensus 71 ~~~~-~~~~~GIlGLg~~~~---------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~--~~ 137 (338)
...+ ...+|||||||++.+ +++.+|.+++.+ +++||+||++.. +.+|+|+|||+|. + ++ .+
T Consensus 221 ~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~-~~~G~l~fGGiD~----~-~~~~~g 294 (482)
T PTZ00165 221 LHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL-NQPGSISFGSADP----K-YTLEGH 294 (482)
T ss_pred ccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC-CCCCEEEeCCcCH----H-HcCCCC
Confidence 2112 246899999999764 356678888877 789999998653 4579999999994 2 33 46
Q ss_pred CeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHH
Q 036447 138 SLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAF 217 (338)
Q Consensus 138 ~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i 217 (338)
++.|+|+.. ..+|.|.+++|+|+++.+.... +...+||||||+++++|+++|++|.+++
T Consensus 295 ~i~~~Pv~~-------------~~yW~i~l~~i~vgg~~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i 353 (482)
T PTZ00165 295 KIWWFPVIS-------------TDYWEIEVVDILIDGKSLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKI 353 (482)
T ss_pred ceEEEEccc-------------cceEEEEeCeEEECCEEeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHc
Confidence 899999975 3799999999999998776531 1357999999999999999999887765
Q ss_pred HHhCCCCcccCCCCCCcccccccccccCCCCCCcCcEEEEEcC--C--eEEEEecCCeEEEE---cCCCeEEE-EEEeCC
Q 036447 218 VNAMPNVTRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQN--N--VSWSIIGANSIVRV---NNNDVSCL-GFVDGG 289 (338)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g--g--~~~~i~~~~yl~~~---~~~~~~Cl-~~~~~~ 289 (338)
... ..|.+. ..+|+|+|+|+| | ++++|+|++|+++. ..++..|+ ++...+
T Consensus 354 ~~~-------------~~C~~~---------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d 411 (482)
T PTZ00165 354 PLE-------------EDCSNK---------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMD 411 (482)
T ss_pred CCc-------------cccccc---------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECC
Confidence 321 368754 368999999975 2 48999999999974 13456897 777654
Q ss_pred CC--CCCceEEcccceeceEEEEeCCCCeEEEEecc
Q 036447 290 VR--PMTSIVIGGHQLENNLLQFDLPSSRLGFSNSL 323 (338)
Q Consensus 290 ~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 323 (338)
.. .++.||||++|||++|+|||++++|||||+..
T Consensus 412 ~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 412 VPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred CCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 32 24689999999999999999999999999643
No 17
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.2e-39 Score=304.60 Aligned_cols=261 Identities=16% Similarity=0.206 Sum_probs=200.3
Q ss_pred ccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccc-cCCCCCc
Q 036447 6 QCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVL-QGLANGV 78 (338)
Q Consensus 6 ~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~-~~~~~~~ 78 (338)
.|...+.+.|. ...|.|++.|+ +|+ ++|.+++|+|+|++. .++ +.|||+..... .......
T Consensus 46 ~c~~~~~y~~~~SsT~~~~~~~~~~~Yg-~g~-~~G~~~~D~v~~g~~---------~~~-~~fg~~~~~~~~~~~~~~~ 113 (326)
T cd05487 46 ACVTHNLYDASDSSTYKENGTEFTIHYA-SGT-VKGFLSQDIVTVGGI---------PVT-QMFGEVTALPAIPFMLAKF 113 (326)
T ss_pred hhcccCcCCCCCCeeeeECCEEEEEEeC-Cce-EEEEEeeeEEEECCE---------Eee-EEEEEEEeccCCccceeec
Confidence 56555555554 46799999998 775 899999999999975 553 68999876421 1112468
Q ss_pred ceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCC
Q 036447 79 VGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVN 150 (338)
Q Consensus 79 ~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~ 150 (338)
+||||||++..+ +..+|..++.| +++||+||++.. ....|+|+||++|. .++.+++.|+|+..
T Consensus 114 dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~y~g~l~~~~~~~---- 184 (326)
T cd05487 114 DGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDP-----QHYQGDFHYINTSK---- 184 (326)
T ss_pred ceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcCh-----hhccCceEEEECCc----
Confidence 999999987644 45667777777 789999998743 24579999999995 37889999999863
Q ss_pred CCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCC
Q 036447 151 TESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPV 230 (338)
Q Consensus 151 ~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~ 230 (338)
..+|.|.+++|+|+++.+.... ...+||||||++++||+++|++|.+++.+... . .
T Consensus 185 ---------~~~w~v~l~~i~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~-~ 240 (326)
T cd05487 185 ---------TGFWQIQMKGVSVGSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER-----L-G 240 (326)
T ss_pred ---------CceEEEEecEEEECCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc-----C-C
Confidence 3789999999999998765321 24699999999999999999999888754321 1 1
Q ss_pred CCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCCC--CCCceEEcccceece
Q 036447 231 APLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGVR--PMTSIVIGGHQLENN 306 (338)
Q Consensus 231 ~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~~~ 306 (338)
.....|... ..+|+|+|+|++ .+++|++++|+++... .+..|+ ++...+.. .++.||||+.|||++
T Consensus 241 ~y~~~C~~~---------~~~P~i~f~fgg-~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~ 310 (326)
T cd05487 241 DYVVKCNEV---------PTLPDISFHLGG-KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKF 310 (326)
T ss_pred CEEEecccc---------CCCCCEEEEECC-EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhcc
Confidence 123467643 368999999965 9999999999987622 256897 66654321 135799999999999
Q ss_pred EEEEeCCCCeEEEEe
Q 036447 307 LLQFDLPSSRLGFSN 321 (338)
Q Consensus 307 ~vvfD~~~~rIGfa~ 321 (338)
|+|||++++|||||+
T Consensus 311 y~vfD~~~~~IGfA~ 325 (326)
T cd05487 311 YTEFDRQNNRIGFAL 325 (326)
T ss_pred EEEEeCCCCEEeeee
Confidence 999999999999996
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.8e-38 Score=303.85 Aligned_cols=273 Identities=19% Similarity=0.252 Sum_probs=197.4
Q ss_pred CCCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC---CCCcceEEecCCCCCc
Q 036447 14 ACGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL---ANGVVGIAGLGRSKVA 90 (338)
Q Consensus 14 ~C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~---~~~~~GIlGLg~~~~s 90 (338)
.|....|.|++.|+ +| +++|.+++|+|+|++.. + ..+ .+.|++.... .+. ....+||||||++.++
T Consensus 49 T~~~~~~~~~i~Yg-~G-s~~G~~~~D~v~ig~~~--~----~~~-~~~~~~~~~~--~~~~~~~~~~dGIlGLg~~~l~ 117 (364)
T cd05473 49 TYRDLGKGVTVPYT-QG-SWEGELGTDLVSIPKGP--N----VTF-RANIAAITES--ENFFLNGSNWEGILGLAYAELA 117 (364)
T ss_pred CcccCCceEEEEEC-cc-eEEEEEEEEEEEECCCC--c----cce-EEeeEEEecc--ccceecccccceeeeecccccc
Confidence 44467899999998 77 47999999999998631 0 122 1345665543 221 1257999999997653
Q ss_pred --------hHHHHhhhcCCCceeEEecCCC--------CCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCC
Q 036447 91 --------LPLQLAAAFSFDRKFAICLSPA--------FPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESG 154 (338)
Q Consensus 91 --------~~~ql~~~~~i~~~FS~cl~~~--------~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~ 154 (338)
+..+|..+..++++||++|... .....|+|+||++|. .++.+++.|+|++.
T Consensus 118 ~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~-----~~~~g~l~~~p~~~-------- 184 (364)
T cd05473 118 RPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP-----SLYKGDIWYTPIRE-------- 184 (364)
T ss_pred cCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCH-----hhcCCCceEEecCc--------
Confidence 4456777666777999976421 113479999999984 36789999999974
Q ss_pred CCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccC-C--CC
Q 036447 155 FLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVA-P--VA 231 (338)
Q Consensus 155 ~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~-~--~~ 231 (338)
..+|.|.+++|+|+++.+.++...+. ...+||||||++++||+++|++|.+++.++... +... . ..
T Consensus 185 -----~~~~~v~l~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 253 (364)
T cd05473 185 -----EWYYEVIILKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLG 253 (364)
T ss_pred -----ceeEEEEEEEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCc
Confidence 36899999999999998876433221 246999999999999999999999999987641 1111 1 11
Q ss_pred CCcccccccccccCCCCCCcCcEEEEEcCC-----eEEEEecCCeEEEEcC--CCeEEEEEEeCCCCCCCceEEccccee
Q 036447 232 PLGACFKSSDIVSSRFGPSVPPIDLVLQNN-----VSWSIIGANSIVRVNN--NDVSCLGFVDGGVRPMTSIVIGGHQLE 304 (338)
Q Consensus 232 ~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg-----~~~~i~~~~yl~~~~~--~~~~Cl~~~~~~~~~~~~~ILG~~fl~ 304 (338)
....|++..... ...+|+|+|+|.++ .+++|+|++|+..... .+..|+++..... .+.||||++|||
T Consensus 254 ~~~~C~~~~~~~----~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr 327 (364)
T cd05473 254 SQLACWQKGTTP----WEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIME 327 (364)
T ss_pred ceeecccccCch----HhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEc
Confidence 124788643211 13699999999762 4789999999886421 2468986543222 247999999999
Q ss_pred ceEEEEeCCCCeEEEEeccCccccCCCCc
Q 036447 305 NNLLQFDLPSSRLGFSNSLLFQRTVCDNF 333 (338)
Q Consensus 305 ~~~vvfD~~~~rIGfa~~~~~~~~~C~~~ 333 (338)
++|+|||++++||||| +++|.+.
T Consensus 328 ~~yvvfD~~~~rIGfa------~~~C~~~ 350 (364)
T cd05473 328 GFYVVFDRANKRVGFA------VSTCAEH 350 (364)
T ss_pred ceEEEEECCCCEEeeE------ecccccc
Confidence 9999999999999999 5778664
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.9e-38 Score=308.33 Aligned_cols=263 Identities=14% Similarity=0.230 Sum_probs=197.4
Q ss_pred CCCccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccc-cC
Q 036447 1 RCGSAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVL-QG 73 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~-~~ 73 (338)
.|.+..|...+.+.|+ ...|.|++.|| +|+ ++|.+++|+|+|++. +++ ..|+++..... ..
T Consensus 169 ~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG-~Gs-v~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~ 236 (450)
T PTZ00013 169 KCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYG-SGT-VKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEP 236 (450)
T ss_pred cCCccccccCCCccCccCcccccCCcEEEEEEC-Cce-EEEEEEEEEEEECCE---------EEc-cEEEEEEecccccc
Confidence 3766778765555553 56799999998 775 999999999999985 665 57888765421 11
Q ss_pred -C-CCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecc
Q 036447 74 -L-ANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPL 144 (338)
Q Consensus 74 -~-~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl 144 (338)
. ...++||||||++.++ ++.+|..++.+ +++||+||++.. ...|+|+|||+|. .++.+++.|+|+
T Consensus 237 ~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~-----~~y~G~L~y~pv 310 (450)
T PTZ00013 237 IYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD-VHAGYLTIGGIEE-----KFYEGNITYEKL 310 (450)
T ss_pred ceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC-CCCCEEEECCcCc-----cccccceEEEEc
Confidence 1 2368999999997654 56788888888 679999998643 4589999999994 378899999999
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCC
Q 036447 145 FINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNV 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 224 (338)
.. ..+|.|.++ +.++...+. +..+||||||+++++|+++++++.+.+.... .
T Consensus 311 ~~-------------~~yW~I~l~-v~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~ 362 (450)
T PTZ00013 311 NH-------------DLYWQIDLD-VHFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--V 362 (450)
T ss_pred Cc-------------CceEEEEEE-EEECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee--c
Confidence 63 478999997 666643321 2569999999999999999988877764321 1
Q ss_pred cccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCCCCCceEEcccc
Q 036447 225 TRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVRPMTSIVIGGHQ 302 (338)
Q Consensus 225 ~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~~~~~~ILG~~f 302 (338)
+. . ......|+. ..+|+|+|+|+| .+++|+|++|+.+.. .++..|+ ++.+.+.. .+.||||++|
T Consensus 363 ~~-~-~~y~~~C~~----------~~lP~i~F~~~g-~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~F 428 (450)
T PTZ00013 363 PF-L-PFYVTTCDN----------KEMPTLEFKSAN-NTYTLEPEYYMNPLLDVDDTLCMITMLPVDID-DNTFILGDPF 428 (450)
T ss_pred CC-C-CeEEeecCC----------CCCCeEEEEECC-EEEEECHHHheehhccCCCCeeEEEEEECCCC-CCCEEECHHH
Confidence 10 1 112346753 258999999976 899999999987531 2346898 66654322 3579999999
Q ss_pred eeceEEEEeCCCCeEEEEecc
Q 036447 303 LENNLLQFDLPSSRLGFSNSL 323 (338)
Q Consensus 303 l~~~~vvfD~~~~rIGfa~~~ 323 (338)
||++|+|||++++|||||++.
T Consensus 429 Lr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 429 MRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hccEEEEEECCCCEEEEEEeC
Confidence 999999999999999999754
No 20
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.9e-38 Score=308.85 Aligned_cols=263 Identities=15% Similarity=0.250 Sum_probs=199.2
Q ss_pred CCCccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeeccccccc--
Q 036447 1 RCGSAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQ-- 72 (338)
Q Consensus 1 ~C~s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~-- 72 (338)
.|.+..|...+.+.|+ ...|.|++.|+ +| +++|.+++|+|+|++. +++ ..|+|+......
T Consensus 170 ~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~ 237 (453)
T PTZ00147 170 KCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEP 237 (453)
T ss_pred CCCcccccCCCccCCccCcceEECCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCccc
Confidence 3767777766555553 56789999998 77 5899999999999985 666 579887755210
Q ss_pred -CCCCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecc
Q 036447 73 -GLANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPL 144 (338)
Q Consensus 73 -~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl 144 (338)
......+||||||++.+| ++.+|..++.+ +++||+||++.. ...|+|+|||+|. .++.+++.|+|+
T Consensus 238 ~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~-~~~G~L~fGGiD~-----~ky~G~l~y~pl 311 (453)
T PTZ00147 238 FYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED-KHKGYLTIGGIEE-----RFYEGPLTYEKL 311 (453)
T ss_pred ccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC-CCCeEEEECCcCh-----hhcCCceEEEEc
Confidence 012368999999998764 45678888778 679999998643 4589999999985 367899999999
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCC
Q 036447 145 FINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNV 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 224 (338)
.. ..+|.|.++ +.+++.... ...+||||||+++++|+++++++.+++.+.. .
T Consensus 312 ~~-------------~~~W~V~l~-~~vg~~~~~------------~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~ 363 (453)
T PTZ00147 312 NH-------------DLYWQVDLD-VHFGNVSSE------------KANVIVDSGTSVITVPTEFLNKFVESLDVFK--V 363 (453)
T ss_pred CC-------------CceEEEEEE-EEECCEecC------------ceeEEECCCCchhcCCHHHHHHHHHHhCCee--c
Confidence 53 378999998 577764311 2579999999999999999999988875421 1
Q ss_pred cccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCCCCCCceEEcccc
Q 036447 225 TRVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGVRPMTSIVIGGHQ 302 (338)
Q Consensus 225 ~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~~~~~~~ILG~~f 302 (338)
+.. ......|+. ..+|+|+|+|+| ..++|+|++|+.+... ....|+ ++...+.. .+.||||++|
T Consensus 364 ~~~--~~y~~~C~~----------~~lP~~~f~f~g-~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~F 429 (453)
T PTZ00147 364 PFL--PLYVTTCNN----------TKLPTLEFRSPN-KVYTLEPEYYLQPIEDIGSALCMLNIIPIDLE-KNTFILGDPF 429 (453)
T ss_pred CCC--CeEEEeCCC----------CCCCeEEEEECC-EEEEECHHHheeccccCCCcEEEEEEEECCCC-CCCEEECHHH
Confidence 111 112346774 258999999975 8999999999976422 345798 57665432 3579999999
Q ss_pred eeceEEEEeCCCCeEEEEecc
Q 036447 303 LENNLLQFDLPSSRLGFSNSL 323 (338)
Q Consensus 303 l~~~~vvfD~~~~rIGfa~~~ 323 (338)
||++|+|||++++|||||++.
T Consensus 430 Lr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 430 MRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred hccEEEEEECCCCEEEEEEec
Confidence 999999999999999999754
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.4e-35 Score=273.71 Aligned_cols=214 Identities=17% Similarity=0.143 Sum_probs=167.1
Q ss_pred CCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-CCCCcceEEecCCCCCc------
Q 036447 18 GICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-LANGVVGIAGLGRSKVA------ 90 (338)
Q Consensus 18 ~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-~~~~~~GIlGLg~~~~s------ 90 (338)
+.|.|.+.|+ +|+.+.|.+++|+|+|++. +++++.|||++...... .....+||||||++..+
T Consensus 55 ~~~~~~i~Y~-~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 PGATWSISYG-DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred CCcEEEEEeC-CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 5799999998 9988999999999999975 78899999998763111 12479999999997654
Q ss_pred ---hHHHHhhhcCCCceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEE
Q 036447 91 ---LPLQLAAAFSFDRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGV 167 (338)
Q Consensus 91 ---~~~ql~~~~~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l 167 (338)
+..+|..+.. +++||+||.+ +..|+|+|||+|. .++.++++|+|++.+ ..+|.|.+
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~---~~~G~l~fGg~D~-----~~~~g~l~~~pi~~~------------~~~w~v~l 183 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK---AAPGFYTFGYIDE-----SKYKGEISWTPVDNS------------SGFWQFTS 183 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC---CCCcEEEEeccCh-----HHcCCceEEEEccCC------------CcEEEEEE
Confidence 3445555432 6899999986 3489999999995 378899999999753 37899999
Q ss_pred EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCC
Q 036447 168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRF 247 (338)
Q Consensus 168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 247 (338)
++|+|+++.+... .+..+||||||+++++|++++++|.+++.... +. . ...+|..+|.
T Consensus 184 ~~i~v~~~~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~--~----~~~~~~~~C~----- 241 (278)
T cd06097 184 TSYTVGGDAPWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YD--S----EYGGWVFPCD----- 241 (278)
T ss_pred eeEEECCcceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc--cc--C----CCCEEEEECC-----
Confidence 9999999743211 13579999999999999999998887763111 10 0 1223444442
Q ss_pred CCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 248 GPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 248 ~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
..+|+|+|+| .||||++|||++|+|||++++|||||+
T Consensus 242 -~~~P~i~f~~------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 242 -TTLPDLSFAV------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -CCCCCEEEEE------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 1389999999 499999999999999999999999994
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7e-34 Score=261.75 Aligned_cols=223 Identities=23% Similarity=0.328 Sum_probs=180.6
Q ss_pred CCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCC------
Q 036447 15 CGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSK------ 88 (338)
Q Consensus 15 C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~------ 88 (338)
|.+..|.|.+.|+ + +.++|.+++|+|+|++. .++++.|||++...........+||||||+..
T Consensus 53 ~~~~~~~~~~~Y~-~-g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~ 121 (283)
T cd05471 53 YKDTGCTFSITYG-D-GSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGV 121 (283)
T ss_pred eecCCCEEEEEEC-C-CeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccC
Confidence 3478999999997 6 57899999999999986 68899999999873212245799999999988
Q ss_pred CchHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEE
Q 036447 89 VALPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIG 166 (338)
Q Consensus 89 ~s~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~ 166 (338)
.+++.||..++.+ +++||+||.+.. ....|+|+||++|. .++.+++.|+|++.+. ..+|.|.
T Consensus 122 ~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~-----~~~~~~~~~~p~~~~~-----------~~~~~v~ 185 (283)
T cd05471 122 PSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDP-----SKYTGDLTYTPVVSNG-----------PGYWQVP 185 (283)
T ss_pred CCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCc-----cccCCceEEEecCCCC-----------CCEEEEE
Confidence 7899999998876 789999999741 24689999999994 3567899999998752 4799999
Q ss_pred EEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCC
Q 036447 167 VKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSR 246 (338)
Q Consensus 167 l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 246 (338)
+++|.|+++..... .....++|||||++++||+++|++|.+++.+.... ...|+...+...
T Consensus 186 l~~i~v~~~~~~~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~-- 246 (283)
T cd05471 186 LDGISVGGKSVISS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPC-- 246 (283)
T ss_pred eCeEEECCceeeec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCccc--
Confidence 99999999751111 12367999999999999999999999998877642 122333322211
Q ss_pred CCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 247 FGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 247 ~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
..+|+|+|+| .+|||+.|||++|++||.+++|||||+
T Consensus 247 --~~~p~i~f~f------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 247 --DTLPDITFTF------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --CcCCCEEEEE------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 5799999999 499999999999999999999999984
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.9e-34 Score=267.92 Aligned_cols=250 Identities=21% Similarity=0.309 Sum_probs=195.7
Q ss_pred CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-CCCCcceEEecCCCC-------
Q 036447 17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-LANGVVGIAGLGRSK------- 88 (338)
Q Consensus 17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-~~~~~~GIlGLg~~~------- 88 (338)
...+.|.+.|+ +|+ ++|.+++|+|+|++. +++++.||.+....... .....+||||||+..
T Consensus 55 ~~~~~~~~~y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 55 NQGKPFSISYG-DGS-VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp EEEEEEEEEET-TEE-EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred cceeeeeeecc-Ccc-cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 44577999997 777 999999999999985 78889999998852111 135789999999743
Q ss_pred CchHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEE
Q 036447 89 VALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGV 167 (338)
Q Consensus 89 ~s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l 167 (338)
.+++.+|..++.| +++||++|.+.. ...|.|+||++|. .++.+++.|+|+.. ..+|.|.+
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~-~~~g~l~~Gg~d~-----~~~~g~~~~~~~~~-------------~~~w~v~~ 184 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSD-SQNGSLTFGGYDP-----SKYDGDLVWVPLVS-------------SGYWSVPL 184 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTT-SSEEEEEESSEEG-----GGEESEEEEEEBSS-------------TTTTEEEE
T ss_pred Ccceecchhhccccccccceeeeecc-cccchheeecccc-----ccccCceeccCccc-------------cccccccc
Confidence 4577899998888 789999998863 4679999999985 46789999999983 47899999
Q ss_pred EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCC
Q 036447 168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRF 247 (338)
Q Consensus 168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 247 (338)
.+|.++++...... ...++|||||++++||++++++|.+.+...... ......|...
T Consensus 185 ~~i~i~~~~~~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~-------- 241 (317)
T PF00026_consen 185 DSISIGGESVFSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST-------- 241 (317)
T ss_dssp EEEEETTEEEEEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG--------
T ss_pred cccccccccccccc---------ceeeecccccccccccchhhHHHHhhhcccccc------eeEEEecccc--------
Confidence 99999998322111 136999999999999999999999988765431 1112455543
Q ss_pred CCCcCcEEEEEcCCeEEEEecCCeEEEEcCC-CeEEE-EEEeCCC-CCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 248 GPSVPPIDLVLQNNVSWSIIGANSIVRVNNN-DVSCL-GFVDGGV-RPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 248 ~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~-~~~Cl-~~~~~~~-~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
..+|.|+|+|++ .+++|+|++|+.+.... ...|+ ++...+. .....+|||..|||++|++||.+++|||||+
T Consensus 242 -~~~p~l~f~~~~-~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 242 -DSLPDLTFTFGG-VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp -GGSEEEEEEETT-EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred -cccceEEEeeCC-EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 358999999985 99999999999987322 34897 5655221 1246899999999999999999999999996
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.97 E-value=2e-30 Score=220.41 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=123.1
Q ss_pred ceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCC--cc-cCCCCCCccccc
Q 036447 162 EYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNV--TR-VAPVAPLGACFK 238 (338)
Q Consensus 162 ~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~--~~-~~~~~~~~~C~~ 238 (338)
+|+|+|++|+||++++.+++..|++ +.+++++||||||++|+||+++|++|+++|.+++... ++ ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999888866 5667899999999999999999999999999998743 22 233566789999
Q ss_pred ccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEE
Q 036447 239 SSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLG 318 (338)
Q Consensus 239 ~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIG 318 (338)
.+..........+|+|+|+|.+|++|+|+|++|++.. .++.+|+++...+....+..|||+.+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~-~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQV-SPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEE-CTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeec-cCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 8862111223689999999998899999999999998 678999999987222247899999999999999999999999
Q ss_pred EEe
Q 036447 319 FSN 321 (338)
Q Consensus 319 fa~ 321 (338)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 985
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.81 E-value=1.2e-19 Score=154.54 Aligned_cols=115 Identities=37% Similarity=0.698 Sum_probs=93.6
Q ss_pred CCCccccCcCCCC--CC--CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCC
Q 036447 1 RCGSAQCNLANAK--AC--GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLAN 76 (338)
Q Consensus 1 ~C~s~~C~~~~~~--~C--~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~ 76 (338)
+|++++|..+++. .| .++.|.|.+.|+ |++.+.|.+++|+|+++...++. ..+.++.|||++.. .+++.
T Consensus 46 ~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~-~~s~~~G~l~~D~~~~~~~~~~~----~~~~~~~FGC~~~~--~g~~~ 118 (164)
T PF14543_consen 46 PCSSPQCSSAPSFCPCCCCSNNSCPYSQSYG-DGSSSSGFLASDTLTFGSSSGGS----NSVPDFIFGCATSN--SGLFY 118 (164)
T ss_dssp BTTSHHHHHCTSSBTCCTCESSEEEEEEEET-TTEEEEEEEEEEEEEEEEESSSS----EEEEEEEEEEE-GG--GTSST
T ss_pred CCCCcchhhcccccccCCCCcCcccceeecC-CCccccCceEEEEEEecCCCCCC----ceeeeEEEEeeecc--ccCCc
Confidence 6999999987643 33 388999999997 99999999999999999874322 46788999999998 56666
Q ss_pred CcceEEecCCCCCchHHHHhhhcCCCceeEEecCCCCCCCceeEEECC
Q 036447 77 GVVGIAGLGRSKVALPLQLAAAFSFDRKFAICLSPAFPRTNGVIIFGD 124 (338)
Q Consensus 77 ~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS~cl~~~~~~~~G~l~fGg 124 (338)
..+||||||+.++||++||+.+ ..++|||||++...+..|+|+||+
T Consensus 119 ~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 119 GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 8999999999999999999887 459999999983347899999995
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.57 E-value=2e-07 Score=73.42 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-CCCcceEEec
Q 036447 17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-ANGVVGIAGL 84 (338)
Q Consensus 17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-~~~~~GIlGL 84 (338)
...|.|.+.|+ +| .+.|.+++|+|+|++. +++++.|||++......+ ....+|||||
T Consensus 52 ~~~~~~~~~Y~-~g-~~~g~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 52 DNGCTFSITYG-TG-SLSGGLSTDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCcEEEEEeC-CC-eEEEEEEEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 56899999998 76 5789999999999875 788999999988732111 2578999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.56 E-value=0.52 Score=37.86 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.1
Q ss_pred ceEEcccceeceEEEEeCCCCeEE
Q 036447 295 SIVIGGHQLENNLLQFDLPSSRLG 318 (338)
Q Consensus 295 ~~ILG~~fl~~~~vvfD~~~~rIG 318 (338)
-.|||..||+.+-.+.|.++++|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 489999999999999999999875
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.21 E-value=0.49 Score=37.92 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.2
Q ss_pred CcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHH
Q 036447 160 SVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 160 ~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 213 (338)
..+|.+. ++|||+.+ .++||||.+.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4666544 67888753 399999999999999987654
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.76 E-value=2.2 Score=33.35 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred CceEEcccceeceEEEEeCCCCeE
Q 036447 294 TSIVIGGHQLENNLLQFDLPSSRL 317 (338)
Q Consensus 294 ~~~ILG~~fl~~~~vvfD~~~~rI 317 (338)
+..+||..||+.+-++-|..++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999988753
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.87 E-value=0.66 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.7
Q ss_pred cEEEeCCccceecchHHHHHH
Q 036447 193 GTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~~y~~l 213 (338)
.++||||.+.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 499999999999999997765
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.19 E-value=0.95 Score=33.99 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.4
Q ss_pred EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHH
Q 036447 169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 213 (338)
.+.|||+.+. +.||||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888753 89999999999999998765
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=86.73 E-value=3.5 Score=33.69 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=25.3
Q ss_pred ceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 295 SIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 295 ~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
-.|||..+|+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 489999999999999999999999984
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.43 E-value=1.9 Score=30.91 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=24.9
Q ss_pred EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHH
Q 036447 169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 213 (338)
.+.|+++.+ .++||||.+-.+++.+..+.|
T Consensus 12 ~~~I~g~~~---------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV---------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE---------------EEEEeCCCcceecCHHHHHHh
Confidence 467787664 399999999999999998776
No 34
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=84.19 E-value=2.2 Score=31.70 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.2
Q ss_pred cEEEeCCccceecchHHHHHH
Q 036447 193 GTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~~y~~l 213 (338)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 499999999999999886654
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=81.59 E-value=2.2 Score=31.74 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=18.3
Q ss_pred EEEeCCccceecchHHHHHH
Q 036447 194 TKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 194 ~iiDSGTt~t~lp~~~y~~l 213 (338)
++||||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 99999999999999998764
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=74.54 E-value=3.4 Score=31.29 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=21.7
Q ss_pred EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHH
Q 036447 168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSI 209 (338)
Q Consensus 168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~ 209 (338)
..|.++++.+. ++||||++.++++.+.
T Consensus 8 i~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEEeECCEEEE---------------EEEecCCCcceecccc
Confidence 34677887653 9999999999998765
No 37
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=72.37 E-value=4.8 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.8
Q ss_pred cEEEeCCccceecchHHHHHH
Q 036447 193 GTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~~y~~l 213 (338)
.+.||||.+...||.+.|+.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 489999999999999998765
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=67.57 E-value=13 Score=32.45 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=28.8
Q ss_pred CcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHH
Q 036447 160 SVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 160 ~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 213 (338)
..+|.+ ...|||+.+. .+||||.|.+.|+.+..+.+
T Consensus 103 ~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 467764 4789998864 89999999999999886544
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.74 E-value=34 Score=28.96 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=18.2
Q ss_pred cEEEeCCccceecchHHHHHH
Q 036447 193 GTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~~y~~l 213 (338)
.+++|||+....+.+++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 499999999999998886665
No 40
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=63.41 E-value=11 Score=30.43 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=23.6
Q ss_pred EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHH
Q 036447 169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 213 (338)
.++|||+.+. |+||||+-.+.++.+.++++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 4778888753 99999999999999998764
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=62.92 E-value=14 Score=27.18 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=36.1
Q ss_pred cceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCC
Q 036447 20 CGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGR 86 (338)
Q Consensus 20 C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~ 86 (338)
....+.++ +|.........+.+++++. +++++.+...... .. ..+||||+.+
T Consensus 43 ~~~~~~~~-~G~~~~~~~~~~~i~ig~~---------~~~~~~~~v~d~~--~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTA-NGRVRAARVRLDSLQIGGI---------TLRNVPAVVLPGD--AL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEec-CCCccceEEEcceEEECCc---------EEeccEEEEeCCc--cc---CCceEeChHH
Confidence 45666665 7777777777888999875 6666666655443 11 5899999864
No 42
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.25 E-value=13 Score=29.84 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.7
Q ss_pred cEEEeCCcc-ceecchHHHHHH
Q 036447 193 GTKISTVNP-YTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt-~t~lp~~~y~~l 213 (338)
..+||||-+ ++.+|+++++++
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc
Confidence 358999999 999999999876
No 43
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=44.06 E-value=61 Score=28.39 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447 249 PSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSN 321 (338)
Q Consensus 249 ~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~ 321 (338)
...+.+.+.+++ ..|.+| ++++. + ++ --.|||.+|+|.|+=.-..+ .+|-|..
T Consensus 65 ~~~~~~~i~I~~-~~F~IP---~iYq~-~----------~g----~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 65 KKAKNGKIQIAD-KIFRIP---TIYQQ-E----------SG----IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecCceEEEcc-EEEecc---EEEEe-c----------CC----CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 456888888876 777766 34433 1 12 34999999999887665554 4677764
No 44
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=31.71 E-value=81 Score=21.34 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=17.9
Q ss_pred cEEEeCCccceecchHHHHHH
Q 036447 193 GTKISTVNPYTVLETSIYNAL 213 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~~y~~l 213 (338)
.+++|+|.+...+..+.++.+
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 489999999999999887643
No 45
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=24.80 E-value=67 Score=29.12 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=14.4
Q ss_pred cEEEeCCccceecchH
Q 036447 193 GTKISTVNPYTVLETS 208 (338)
Q Consensus 193 ~~iiDSGTt~t~lp~~ 208 (338)
.+++|||++.+.+|.+
T Consensus 15 ~v~~DTGS~~~wv~~~ 30 (278)
T cd06097 15 NLDLDTGSSDLWVFSS 30 (278)
T ss_pred EEEEeCCCCceeEeeC
Confidence 4999999999999965
Done!