Query         036447
Match_columns 338
No_of_seqs    134 out of 1132
Neff          8.3 
Searched_HMMs 13730
Date          Mon Mar 25 22:04:58 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036447.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036447hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1t6ex_ b.50.1.2 (X:) Xylanase 100.0 1.1E-41   8E-46  323.1  24.9  290   17-332    78-380 (381)
  2 d1j71a_ b.50.1.2 (A:) Acid pro 100.0 7.9E-40 5.7E-44  305.9  20.6  239   17-322    75-323 (334)
  3 g1htr.1 b.50.1.2 (P:,B:) Pepsi 100.0 1.5E-39 1.1E-43  308.1  20.8  267    1-321    87-370 (372)
  4 d2apra_ b.50.1.2 (A:) Acid pro 100.0 6.3E-39 4.6E-43  298.3  23.1  246   17-321    68-322 (325)
  5 d3psga_ b.50.1.2 (A:) Pepsin(o 100.0 5.2E-39 3.8E-43  304.3  22.0  264    1-321    88-368 (370)
  6 d1dpja_ b.50.1.2 (A:) Acid pro 100.0 2.1E-38 1.5E-42  294.4  22.7  265    2-323    46-329 (329)
  7 d1eaga_ b.50.1.2 (A:) Acid pro 100.0 1.2E-38 8.7E-43  298.1  16.1  252   17-330    75-338 (342)
  8 d1oewa_ b.50.1.2 (A:) Endothia 100.0 2.3E-37 1.6E-41  288.6  18.8  262    2-321    48-329 (330)
  9 d1izea_ b.50.1.2 (A:) Acid pro 100.0 3.6E-37 2.6E-41  285.5  19.2  259    2-321    46-321 (323)
 10 d1am5a_ b.50.1.2 (A:) Pepsin(o 100.0 7.4E-36 5.4E-40  276.5  22.2  262    2-322    45-323 (324)
 11 d1smra_ b.50.1.2 (A:) Chymosin 100.0 1.4E-36 9.9E-41  283.0  17.2  253   17-322    71-334 (335)
 12 d1bxoa_ b.50.1.2 (A:) Acid pro 100.0 2.5E-36 1.8E-40  279.6  18.6  260    2-321    46-321 (323)
 13 d1miqa_ b.50.1.2 (A:) Plasmeps 100.0 1.2E-35 8.4E-40  280.9  22.8  264    1-323    92-372 (373)
 14 d2qp8a1 b.50.1.2 (A:60-446) be 100.0 2.4E-35 1.7E-39  280.3  21.4  268   16-321    63-358 (387)
 15 d1mppa_ b.50.1.2 (A:) Pepsin { 100.0   1E-34 7.6E-39  272.7  21.1  258   17-324    69-352 (357)
 16 d1hrna_ b.50.1.2 (A:) Chymosin 100.0   9E-35 6.6E-39  270.6  20.5  252   17-322    71-336 (337)
 17 d1wkra_ b.50.1.2 (A:) Acid pro 100.0 2.4E-34 1.7E-38  268.7  20.6  255   17-324    54-334 (340)
 18 g1lya.1 b.50.1.2 (A:,B:) Cathe 100.0   1E-32 7.6E-37  255.4  23.0  256   17-322    69-337 (338)
 19 d3cmsa_ b.50.1.2 (A:) Chymosin 100.0 8.7E-33 6.4E-37  254.8  21.1  264    1-323    46-323 (323)
 20 d2bjua1 b.50.1.2 (A:1-329) Pla 100.0 8.7E-33 6.4E-37  255.7  17.3  265    1-324    46-327 (329)
 21 g1b5f.1 b.50.1.2 (A:,B:) Plant 100.0 2.1E-32 1.6E-36  252.7  19.9  250   17-322    68-325 (326)
 22 d1qdma2 b.50.1.2 (A:2-247,A:24 100.0 3.6E-31 2.6E-35  244.9  22.1  257   13-321    66-335 (337)
 23 d1bxoa_ b.50.1.2 (A:) Acid pro  75.1     1.4  0.0001   37.1   4.8   42  136-208     3-44  (323)
 24 d1izea_ b.50.1.2 (A:) Acid pro  60.9     3.9 0.00028   34.2   4.6   42  137-209     4-45  (323)
 25 d3cmsa_ b.50.1.2 (A:) Chymosin  50.9     7.5 0.00055   32.1   4.7   16  193-208    30-45  (323)
 26 d1smra_ b.50.1.2 (A:) Chymosin  38.5      16  0.0011   30.3   4.8   16  193-208    31-46  (335)
 27 d1mppa_ b.50.1.2 (A:) Pepsin {  36.1      14 0.00099   31.1   4.0   16  193-208    30-45  (357)
 28 d2fmba_ b.50.1.1 (A:) EIAV pro  34.6      25  0.0018   24.3   4.6   31  166-211     9-39  (104)
 29 d1dpja_ b.50.1.2 (A:) Acid pro  33.6      20  0.0014   29.5   4.6   16  193-208    29-44  (329)
 30 d1oewa_ b.50.1.2 (A:) Endothia  32.7      21  0.0016   29.6   4.7   17  193-209    31-47  (330)
 31 g1b5f.1 b.50.1.2 (A:,B:) Plant  29.3      12 0.00088   30.8   2.4   33  160-208    12-44  (326)
 32 d3psga_ b.50.1.2 (A:) Pepsin(o  24.0      45  0.0033   27.9   5.3   17  193-209    72-88  (370)
 33 d1j71a_ b.50.1.2 (A:) Acid pro  22.8      38  0.0028   28.0   4.5   16  193-208    28-43  (334)
 34 d2qp8a1 b.50.1.2 (A:60-446) be  20.0      37  0.0027   28.6   3.9   15  193-207    30-44  (387)

No 1  
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=100.00  E-value=1.1e-41  Score=323.11  Aligned_cols=290  Identities=29%  Similarity=0.508  Sum_probs=220.9

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCCchHHHHh
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKVALPLQLA   96 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~   96 (338)
                      ...|.|.+.|+ +|+.+.|.+++|+|++++.....+...+ ..++.++|.......+.....+||+|||+...++++|+.
T Consensus        78 ~~~~~~~~~Y~-~Gs~~~G~~~~D~v~ig~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~  155 (381)
T d1t6ex_          78 KPCTAYPYNPV-SGACAAGSLSHTRFVANTTDGSKPVSKV-NVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVA  155 (381)
T ss_dssp             CBCEECCBCTT-TCCBCCEEEEEEEEEEEEESSSSEEEEE-EEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHH
T ss_pred             CCCceeEEEeC-CCCEEEEEEEEEEEEecccccccceeeE-EeeeeeeccccccccccccCcceeeecCCCCcchHHHHh
Confidence            45678999997 9999999999999999986433211111 224677777666433445678999999999999999999


Q ss_pred             hhcCCCceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeE
Q 036447           97 AAFSFDRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKA  176 (338)
Q Consensus        97 ~~~~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~  176 (338)
                      ....++++|++||.+.. ...+.+.+|+++.     .++.+++.|+|++.+.          ...+|.|.+.+|.++++.
T Consensus       156 ~~~~~~~~fsl~l~~~~-~~~~~~~~g~~~~-----~~~~g~~~~~pi~~~~----------~~~~~~v~l~~i~v~~~~  219 (381)
T d1t6ex_         156 SAQKVANRFLLCLPTGG-PGVAIFGGGPVPW-----PQFTQSMPYTPLVTKG----------GSPAHYISARSIVVGDTR  219 (381)
T ss_dssp             HHHTCCSEEEEECCSSS-CEEEEESCCSCSC-----HHHHTTCCEEECBCCT----------TCCSCEECEEEEEETTEE
T ss_pred             hhcCcceEEEeecCCCc-ccceEeecccccc-----cccCCceEEEeeeccC----------CCceeEEEEEEEeeCCee
Confidence            88888899999998753 3445666666663     4678999999998764          246899999999999998


Q ss_pred             eecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCC--------CcccCCCCCCcccccccccccCCCC
Q 036447          177 IPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPN--------VTRVAPVAPLGACFKSSDIVSSRFG  248 (338)
Q Consensus       177 i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~--------~~~~~~~~~~~~C~~~~~~~~~~~~  248 (338)
                      +.++...     .....+|+||||++++||+++|++|.+++.+.+..        .........+..||+..........
T Consensus       220 ~~~~~~~-----~~~~~~i~DTGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (381)
T d1t6ex_         220 VPVPEGA-----LATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGG  294 (381)
T ss_dssp             CCCCTTC-----SCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTE
T ss_pred             eccCccc-----ccCcceEEecCCceEECCHHHHHHHHHHHHHHhcccccccccccccccccCCcceeeccccccccccc
Confidence            8764332     22467999999999999999999999999876431        0111223456788887654322223


Q ss_pred             CCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCC-----CCCCceEEcccceeceEEEEeCCCCeEEEEecc
Q 036447          249 PSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGV-----RPMTSIVIGGHQLENNLLQFDLPSSRLGFSNSL  323 (338)
Q Consensus       249 ~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~-----~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~  323 (338)
                      ..+|+|+|+|.+++.++|+|++|++.. ..+..|+++.....     ...+.||||++|||++|+|||++++|||||+..
T Consensus       295 ~~~P~i~~~f~~~~~~~i~~~~y~~~~-~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~  373 (381)
T d1t6ex_         295 YAVPNVQLGLDGGSDWTMTGKNSMVDV-KQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             ECCCCEEEEETTSCEEEECHHHHEEEE-ETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             cccccEEEEEcCCcEEEEChhHeEEEe-CCCcEEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEECC
Confidence            578999999988899999999999887 56789998765322     123579999999999999999999999999855


Q ss_pred             CccccCCCC
Q 036447          324 LFQRTVCDN  332 (338)
Q Consensus       324 ~~~~~~C~~  332 (338)
                      .  .++|..
T Consensus       374 ~--~~~~~~  380 (381)
T d1t6ex_         374 H--FTGCGG  380 (381)
T ss_dssp             T--TCCSCC
T ss_pred             C--CCCCcC
Confidence            4  567764


No 2  
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=100.00  E-value=7.9e-40  Score=305.92  Aligned_cols=239  Identities=15%  Similarity=0.202  Sum_probs=195.4

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC-------
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV-------   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~-------   89 (338)
                      ...|.|++.|+ +++.+.|.+++|+|+|++.         +++++.|||+...  .    ..+||+|||+...       
T Consensus        75 ~~~~~~~~~Y~-~g~~~~G~~~~D~~~~g~~---------~~~~~~f~~~~~~--~----~~~GilGlg~~~~~~~~~~~  138 (334)
T d1j71a_          75 NLNQDFSIEYG-DLTSSQGSFYKDTVGFGGI---------SIKNQQFADVTTT--S----VDQGIMGIGFTADEAGYNLY  138 (334)
T ss_dssp             EEEEEEEEEBT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEE--S----SSSCEEECSCGGGSSTTCCC
T ss_pred             CCCcCEEEEeC-CCceEEEEEEeeEEEEeee---------eccCceeeeeeee--c----cccCcccccccccccccccc
Confidence            56799999997 9999999999999999875         7889999999776  2    4689999998643       


Q ss_pred             -chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEE
Q 036447           90 -ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGV  167 (338)
Q Consensus        90 -s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l  167 (338)
                       +++.+|..++.+ +++||+||.+.. ...|+|+||++|.     .++.+++.|+|+..             ..+|.|.|
T Consensus       139 ~~~~~~l~~q~~i~~~~fs~~l~~~~-~~~g~l~lGg~d~-----~~~~g~~~~~~~~~-------------~~~~~v~l  199 (334)
T d1j71a_         139 DNVPVTLKKQGIINKNAYSLYLNSED-ASTGKIIFGGVDN-----AKYTGTLTALPVTS-------------SVELRVHL  199 (334)
T ss_dssp             CCHHHHHHHTTSCSSSEEEEECCCTT-CSEEEEEETEEET-----TSEEEEEEEEECCC-------------SSSCEEEE
T ss_pred             chhhHHHHhccccccceEEEEeccCC-CCCceEEecccCh-----hhcccceeEeeecc-------------ccceEEee
Confidence             367788888877 789999998753 5679999999984     36788999999875             36899999


Q ss_pred             EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCC
Q 036447          168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRF  247 (338)
Q Consensus       168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  247 (338)
                      ++|+|++..+..           +..+||||||++++||+++|++|.+.+.+....         ...||...+.     
T Consensus       200 ~~i~v~g~~~~~-----------~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~-----  254 (334)
T d1j71a_         200 GSINFDGTSVST-----------NADVVLDSGTTITYFSQSTADKFARIVGATWDS---------RNEIYRLPSC-----  254 (334)
T ss_dssp             EEEEETTEEEEE-----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEET---------TTTEEECSSS-----
T ss_pred             ceEEECCEEecc-----------cccccccCCCcceeccHHHHHHHHHHhCCEEcC---------CCCeeecccc-----
Confidence            999999988752           246999999999999999999998887543211         1123333322     


Q ss_pred             CCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEec
Q 036447          248 GPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       248 ~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~  322 (338)
                       ...|+++|+|.+|++++|+|++|+++. .++..|+ ++...     +.+|||+.|||++|++||+|++|||||+.
T Consensus       255 -~~~p~i~f~f~~g~~~~i~~~~y~~~~-~~~~~C~~~i~~~-----~~~ILG~~fl~~~y~vfD~~n~~iGfA~~  323 (334)
T d1j71a_         255 -DLSGDAVFNFDQGVKITVPLSELILKD-SDSSICYFGISRN-----DANILGDNFLRRAYIVYDLDDKTISLAQV  323 (334)
T ss_dssp             -CCCSEEEEEESTTCEEEEEGGGGEEEC-SSSSCEEESEEEC-----TTCEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             -ccCCCceEEeCCCEEEEEChHHeEEec-CCCCEEEEEecCC-----CCcEECHHhhCcEEEEEECCCCEEEEEEC
Confidence             357999999987899999999999886 5566787 56543     36899999999999999999999999963


No 3  
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens), progastricsin (pepsinogen C) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-39  Score=308.07  Aligned_cols=267  Identities=17%  Similarity=0.208  Sum_probs=205.2

Q ss_pred             CCCccccCcCCCCCC------CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-
Q 036447            1 RCGSAQCNLANAKAC------GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-   73 (338)
Q Consensus         1 ~C~s~~C~~~~~~~C------~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-   73 (338)
                      +|.+..|...+.+.|      ..+.|.|++.|+ +| +++|.+++|+|++++.         .++++.|+|+..+.... 
T Consensus        87 ~C~~~~~~~~~~y~~~~Sst~~~~~~~~~i~Yg-~G-s~~G~~~~d~v~~~~~---------~~~~~~f~~~~~~~~~~~  155 (372)
T g1htr.1          87 YCQSQACTSHSRFNPSESSTYSTNGQTFSLQYG-SG-SLTGFFGYDTLTVQSI---------QVPNQEFGLSENEPGTNF  155 (372)
T ss_dssp             TCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEET-TE-EEEEEEEEEEEEETTE---------EEEEEEEEEESSCSSGGG
T ss_pred             CCCCccccCCCCCCccccCccccCCceeEEecC-Ce-EEEEEEEeeeeeeccc---------eeCceEEEEEEecccccc
Confidence            365555555443333      256799999998 65 6889999999999986         78889999987763221 


Q ss_pred             CCCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447           74 LANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI  146 (338)
Q Consensus        74 ~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~  146 (338)
                      .....+||+|||++..+      +..+|..++.+ +++||+||........|.|+||++|.     .++.+++.|+|+..
T Consensus       156 ~~~~~~Gi~Gl~~~~~~~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~~~g~l~~Gg~d~-----~~~~g~~~~~p~~~  230 (372)
T g1htr.1         156 VYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDS-----SLYTGQIYWAPVTQ  230 (372)
T ss_dssp             GGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCG-----GGEEEEEEEEEBCS
T ss_pred             ccccccCcccccCCccccCCcchhhhHHHhcCCcccceeeEEeccCCCCCcceEecCCcCc-----ccccCceeEeeecc
Confidence            23568999999987654      55667777777 78999999875435679999999995     36789999999864


Q ss_pred             CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447          147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR  226 (338)
Q Consensus       147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~  226 (338)
                                   ..+|.|.+++|.|+++.+.+...        ...+||||||++++||+++|++|.+++.+....   
T Consensus       231 -------------~~~~~v~l~~i~vg~~~~~~~~~--------~~~aiiDSGtt~~~lp~~~~~~l~~~~~~~~~~---  286 (372)
T g1htr.1         231 -------------ELYWQIGIEEFLIGGQASGWCSE--------GCQAIVDTGTSLLTVPQQYMSALLQATGAQEDE---  286 (372)
T ss_dssp             -------------SSSCEEEECEEEETTEECCTTTT--------CEEEEECTTCCSEEEEGGGHHHHHHHHTCEECT---
T ss_pred             -------------ccceEEeeeeEEECCEEeeeecC--------CceEEEeCCCCcEEccHHHHHHHHHHhCCeecc---
Confidence                         47899999999999998765432        246999999999999999999999988765431   


Q ss_pred             cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCC---CCCCceEEcccce
Q 036447          227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGV---RPMTSIVIGGHQL  303 (338)
Q Consensus       227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~---~~~~~~ILG~~fl  303 (338)
                        .......|...         ..+|+|+|+|+| ++++|+|++|+++.  ++..|+++.....   ...+.||||+.||
T Consensus       287 --~~~~~~~C~~~---------~~~P~i~f~f~g-~~~~l~~~~yi~~~--~~~c~~~i~~~~~~~~~~~~~~ILG~~fl  352 (372)
T g1htr.1         287 --YGQFLVNCNSI---------QNLPSLTFIING-VEFPLPPSSYILSN--NGYCTVGVEPTYLSSQNGQPLWILGDVFL  352 (372)
T ss_dssp             --TSCEEECGGGG---------GGSCCEEEEETT-EEEEECHHHHEEEC--SSCEEESEEEECCCCTTSSCEEEECHHHH
T ss_pred             --CCcEEeecccc---------CcCCcEEEEECC-EEEEECHHHeEEec--CCEEEEEEEecccCCCCCCccEEEcHHhh
Confidence              11122456543         368999999965 99999999999874  3444456764322   1246799999999


Q ss_pred             eceEEEEeCCCCeEEEEe
Q 036447          304 ENNLLQFDLPSSRLGFSN  321 (338)
Q Consensus       304 ~~~~vvfD~~~~rIGfa~  321 (338)
                      |++|+|||++++|||||+
T Consensus       353 ~~~y~vfD~~~~~iGfA~  370 (372)
T g1htr.1         353 RSYYSVYDLGNNRVGFAT  370 (372)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEe
Confidence            999999999999999997


No 4  
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}
Probab=100.00  E-value=6.3e-39  Score=298.25  Aligned_cols=246  Identities=16%  Similarity=0.148  Sum_probs=196.3

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC-------
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV-------   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~-------   89 (338)
                      ...|.|.+.|+ +|+.+.|.+++|+|++++.         +++++.|+++............+||+|||+..+       
T Consensus        68 ~~~~~~~~~y~-~g~~~~G~~~~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~~~~~~~~  137 (325)
T d2apra_          68 ADGRTWSISYG-DGSSASGILAKDNVNLGGL---------LIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVK  137 (325)
T ss_dssp             EEEEEEEEECT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCC
T ss_pred             ECCeEEEEEeC-CCCeEEEEEEeeeEEeeee---------eccCcceeeeeeecccccccccCcccccccccccccccCC
Confidence            56799999997 9999999999999999985         788889999876521112346899999997543       


Q ss_pred             chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEE
Q 036447           90 ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVK  168 (338)
Q Consensus        90 s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~  168 (338)
                      +++.++..++.+ +++||+||.+......|.|+||++|.     .++.++++|+|+...            ..+|.|.++
T Consensus       138 ~~~~~l~~~g~i~~~~fs~~l~~~~~~~~g~l~~Gg~d~-----~~~~~~~~~~~~~~~------------~~~~~v~l~  200 (325)
T d2apra_         138 TPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDS-----TKFKGSLTTVPIDNS------------RGWWGITVD  200 (325)
T ss_dssp             CHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCG-----GGBCSCCEEEECBCT------------TSSCEEEEC
T ss_pred             cchhHHHhhccccceeEEEEeccCCCCCCeEEEecCCCc-----hhhccceeeEeecCC------------CceEEEEEe
Confidence            467778887777 68999999875435679999999995     367899999998753            478999999


Q ss_pred             EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCC
Q 036447          169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFG  248 (338)
Q Consensus       169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~  248 (338)
                      +|.+++..+..           ...++|||||++++||+++|++|.+.+.+....    .. .....|..          
T Consensus       201 ~i~i~~~~~~~-----------~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~~~----~~-~~~~~C~~----------  254 (325)
T d2apra_         201 RATVGTSTVAS-----------SFDGILDTGTTLLILPNNIAASVARAYGASDNG----DG-TYTISCDT----------  254 (325)
T ss_dssp             EEEETTEEEEC-----------CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECS----SS-CEEECSCG----------
T ss_pred             eEEECCEeecc-----------eeeeeccCCCccccCCHHHHHHHHHHhCCcccC----CC-ceeecccC----------
Confidence            99999988752           246999999999999999999998887543221    11 11134532          


Q ss_pred             CCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEe
Q 036447          249 PSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSN  321 (338)
Q Consensus       249 ~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~  321 (338)
                      ..+|+|+|+|+| .+++|+|++|+++. .+ ..|+ ++...+.   +.+|||+.|||++|+|||+|++|||||+
T Consensus       255 ~~~p~i~f~f~g-~~~~i~~~~y~~~~-~~-~~C~~~i~~~~~---~~~iLG~~flr~~y~vfD~~~~~IGfAp  322 (325)
T d2apra_         255 SAFKPLVFSING-ASFQVSPDSLVFEE-FQ-GQCIAGFGYGNW---GFAIIGDTFLKNNYVVFNQGVPEVQIAP  322 (325)
T ss_dssp             GGCCCEEEEETT-EEEEECGGGGEEEE-ET-TEEEESEEEESS---SSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEECC-EEEEEChHHeEEec-CC-CEEEEEEccCCC---CCEEECHHHhCcEEEEEECCCCEEeEEE
Confidence            357999999975 99999999999886 33 3565 6766543   5799999999999999999999999997


No 5  
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=100.00  E-value=5.2e-39  Score=304.34  Aligned_cols=264  Identities=17%  Similarity=0.186  Sum_probs=200.8

Q ss_pred             CCCccccCcCCCCC------CCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC
Q 036447            1 RCGSAQCNLANAKA------CGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL   74 (338)
Q Consensus         1 ~C~s~~C~~~~~~~------C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~   74 (338)
                      +|.+..|...+.+.      |....|.|.+.|+ +| +++|.++.|++.+++.         +++++.|||++.......
T Consensus        88 ~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg-~G-s~~G~~~~d~~~~~~~---------~~~~~~f~~~~~~~~~~~  156 (370)
T d3psga_          88 YCSSLACSDHNQFNPDDSSTFEATSQELSITYG-TG-SMTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFL  156 (370)
T ss_dssp             TCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESS-SC-EEEEEEEEEEEEETTE---------EEEEEEEEEECSCCCGGG
T ss_pred             cCCCcccccccccCCCcccccccCCCcEEEEeC-Cc-eEEEEEEEEEEeeece---------eeeeeEEEEEeeccCcee
Confidence            35555555443322      2256899999998 66 5899999999999985         788999999987632222


Q ss_pred             -CCCcceEEecCCCCCc------hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447           75 -ANGVVGIAGLGRSKVA------LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI  146 (338)
Q Consensus        75 -~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~  146 (338)
                       ....+||+|||++..+      +..++..++.+ +++||+|+.+.. ..+|.|+||++|.     .++.+++.|+|+..
T Consensus       157 ~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~-~~~g~l~~Gg~d~-----~~~~~~l~~~p~~~  230 (370)
T d3psga_         157 YYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND-DSGSVVLLGGIDS-----SYYTGSLNWVPVSV  230 (370)
T ss_dssp             GGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC------CEEEEETCCCG-----GGBSSCCEEEECSE
T ss_pred             cccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCC-CCCceEecCCcCc-----hhcccceeEEeecc
Confidence             3568999999986543      56777777777 789999998764 5689999999995     36789999999865


Q ss_pred             CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447          147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR  226 (338)
Q Consensus       147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~  226 (338)
                                   ..+|.|.++++.++++.+....         +..+||||||++++||+++|++|.+++.+....   
T Consensus       231 -------------~~~w~v~~~~i~v~g~~~~~~~---------~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~---  285 (370)
T d3psga_         231 -------------EGYWQITLDSITMDGETIACSG---------GCQAIVDTGTSLLTGPTSAIANIQSDIGASENS---  285 (370)
T ss_dssp             -------------ETTEEEEECEEESSSSEEECTT---------CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT---
T ss_pred             -------------cceEEEEEeeEEeCCeEEecCC---------CccEEEecCCceEeCCHHHHHHHHHHhCCeeec---
Confidence                         3789999999999998876432         357999999999999999999998887654321   


Q ss_pred             cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCC--CCCCceEEcccce
Q 036447          227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGV--RPMTSIVIGGHQL  303 (338)
Q Consensus       227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~--~~~~~~ILG~~fl  303 (338)
                       . ......|+..         ..+|+|+|+|+| ++|+|+|++|+++.   +..|+ ++...+.  ..++.||||++||
T Consensus       286 -~-~~~~~~C~~~---------~~~P~l~f~f~g-~~~~l~~~~yi~~~---~~~c~~~~~~~~~~~~~~~~~ILG~~fl  350 (370)
T d3psga_         286 -D-GEMVISCSSI---------DSLPDIVFTIDG-VQYPLSPSAYILQD---DDSCTSGFEGMDVPTSSGELWILGDVFI  350 (370)
T ss_dssp             -T-CCEECCGGGG---------GGCCCEEEEETT-EEEEECHHHHEEEC---SSCEEESEEEECCCTTSCCEEEECHHHH
T ss_pred             -C-CcEEEecccc---------CCCceEEEEECC-EEEEEChHHeEEEc---CCeEEEEEEEcccCCCCCCcEEECHHhh
Confidence             1 1223467764         358999999965 99999999999875   23364 4543322  1246899999999


Q ss_pred             eceEEEEeCCCCeEEEEe
Q 036447          304 ENNLLQFDLPSSRLGFSN  321 (338)
Q Consensus       304 ~~~~vvfD~~~~rIGfa~  321 (338)
                      |++|+|||++++|||||+
T Consensus       351 r~~y~vfD~~~~~IGfAp  368 (370)
T d3psga_         351 RQYYTVFDRANNKVGLAP  368 (370)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEECCCCEEEEEe
Confidence            999999999999999997


No 6  
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}
Probab=100.00  E-value=2.1e-38  Score=294.42  Aligned_cols=265  Identities=17%  Similarity=0.207  Sum_probs=201.8

Q ss_pred             CCccccCcCCCCCCC------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeeccccccc-CC
Q 036447            2 CGSAQCNLANAKACG------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQ-GL   74 (338)
Q Consensus         2 C~s~~C~~~~~~~C~------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~-~~   74 (338)
                      |.+..|...+.+.|.      ...|.|.+.|+ +| ++.|.+++|+|+|++.         ++.++.|+++..+... ..
T Consensus        46 C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~y~-~g-s~~G~~~~D~~~~g~~---------~~~~~~~~~~~~~~~~~~~  114 (329)
T d1dpja_          46 CGSLACFLHSKYDHEASSSYKANGTEFAIQYG-TG-SLEGYISQDTLSIGDL---------TIPKQDFAEATSEPGLTFA  114 (329)
T ss_dssp             CCSHHHHTSCCBCGGGCTTCEEEEEEEEEEET-TE-EEEEEEEEEEEEETTE---------EEEEEEEEEEEECCHHHHT
T ss_pred             CCCccccCCCcCCcccCCceeECCeeEEEEcc-Cc-eEEEEEEEEEEEecce---------EEeeEEEEEEeeccCcccc
Confidence            666666655544332      56899999997 64 6899999999999875         6778899998765211 12


Q ss_pred             CCCcceEEecCCCCCch------HHHHhhhcCC-CceeEEecCCCC--CCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447           75 ANGVVGIAGLGRSKVAL------PLQLAAAFSF-DRKFAICLSPAF--PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF  145 (338)
Q Consensus        75 ~~~~~GIlGLg~~~~s~------~~ql~~~~~i-~~~FS~cl~~~~--~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~  145 (338)
                      ....+||+|||+...+.      ..++..++.+ +++||+||....  ....|.|+||++|.     .++.+.+.|+|+.
T Consensus       115 ~~~~~Gi~Glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-----~~~~~~~~~~~~~  189 (329)
T d1dpja_         115 FGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDE-----SKFKGDITWLPVR  189 (329)
T ss_dssp             TCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCG-----GGEEEEEEEEECS
T ss_pred             ccccccccccccCccccccCCchhhhHhhccCcccceEEEEEEecCCCcCCCCceECCCCch-----hhccCceeEeccc
Confidence            35689999999876543      3456666666 789999997542  35679999999995     3678899999986


Q ss_pred             cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447          146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT  225 (338)
Q Consensus       146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~  225 (338)
                      .             ..+|.|.+++|+|+++.+...          +..+||||||++++||+++|++|.+++.....   
T Consensus       190 ~-------------~~~~~v~~~~i~v~~~~~~~~----------~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~---  243 (329)
T d1dpja_         190 R-------------KAYWEVKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMINAEIGAKKG---  243 (329)
T ss_dssp             S-------------BTTBEEEEEEEEETTEEEECS----------SCEEEECTTCSCEEECHHHHHHHHHHHTCEEC---
T ss_pred             c-------------cceeEEEEeeEEECCeEeeee----------ecccccCcccceeeCCHHHHHHHHHHhCCccc---
Confidence            4             478999999999999987653          25799999999999999999999988854321   


Q ss_pred             ccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCC--CCCceEEcccc
Q 036447          226 RVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVR--PMTSIVIGGHQ  302 (338)
Q Consensus       226 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~--~~~~~ILG~~f  302 (338)
                        ........|...         ..+|+|+|+|+| ++++|+|++|+++.  . ..|. .+...+..  ..+.+|||+.|
T Consensus       244 --~~~~~~~~c~~~---------~~~P~i~f~f~g-~~~~l~p~~y~~~~--~-~~c~~~~~~~~~~~~~~~~~iLG~~f  308 (329)
T d1dpja_         244 --WTGQYTLDCNTR---------DNLPDLIFNFNG-YNFTIGPYDYTLEV--S-GSCISAITPMDFPEPVGPLAIVGDAF  308 (329)
T ss_dssp             --TTSSEEECGGGG---------GGCCCEEEEETT-EEEEECTTTSEEEE--T-TEEEECEEECCCCTTTCSEEEECHHH
T ss_pred             --cceeEEEecccc---------CccceEEEEECC-EEEEECHHHeEEec--C-CcEEEEEEECccCCCCCCcEEEcHHh
Confidence              111112345432         468999999975 99999999999886  2 3465 56654321  24679999999


Q ss_pred             eeceEEEEeCCCCeEEEEecc
Q 036447          303 LENNLLQFDLPSSRLGFSNSL  323 (338)
Q Consensus       303 l~~~~vvfD~~~~rIGfa~~~  323 (338)
                      ||++|+|||++++|||||+++
T Consensus       309 l~~~y~vfD~~~~~igfA~a~  329 (329)
T d1dpja_         309 LRKYYSIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             HTTEEEEEETTTTEEEEEEEC
T ss_pred             hCcEEEEEECCCCEEEEEEeC
Confidence            999999999999999999854


No 7  
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}
Probab=100.00  E-value=1.2e-38  Score=298.13  Aligned_cols=252  Identities=15%  Similarity=0.203  Sum_probs=198.3

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC-------
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV-------   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~-------   89 (338)
                      ...|.|++.|+ +|+.+.|.++.|+++|++.         +++++.|+++...      ...+|++|||....       
T Consensus        75 ~~~~~~~~~Y~-~g~~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~------~~~~g~~Glg~~~~~~~~~~~  138 (342)
T d1eaga_          75 DLNTPFKIGYG-DGSSSQGTLYKDTVGFGGV---------SIKNQVLADVDST------SIDQGILGVGYKTNEAGGSYD  138 (342)
T ss_dssp             EEEEEEEEECT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEE------SSSSCEEECSCGGGCSSCSCC
T ss_pred             ECCeeEEEEeC-CCceEEEEEEeeEEEeceE---------eeeeeEEEeecee------ecccccccccccccccCCccC
Confidence            56789999998 9999999999999999885         7788999998765      24689999997542       


Q ss_pred             chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEE
Q 036447           90 ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVK  168 (338)
Q Consensus        90 s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~  168 (338)
                      +++.+|..++.+ +++||+||.+.. ...|.|+||++|.     .++.+++.|+|+..             ..+|.|.++
T Consensus       139 ~~~~~L~~q~~i~~~~fs~~l~~~~-~~~G~l~~Gg~d~-----~~~~g~~~~~p~~~-------------~~~w~v~l~  199 (342)
T d1eaga_         139 NVPVTLKKQGVIAKNAYSLYLNSPD-AATGQIIFGGVDN-----AKYSGSLIALPVTS-------------DRELRISLG  199 (342)
T ss_dssp             CHHHHHHHTTSSSSSEEEEECCCTT-CSEEEEEETEEET-----TSEEEEEEEEECCC-------------SSSCEEEEE
T ss_pred             ccceehhhcCCccceEEEEEcCCCC-CCCceEEEcccCc-----hhccceEEEEeccc-------------ccceEEEEe
Confidence            467788888877 789999998753 5689999999984     36678999999874             368999999


Q ss_pred             EEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCC
Q 036447          169 SIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFG  248 (338)
Q Consensus       169 ~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~  248 (338)
                      +|+|+++.+...          ...+||||||++++||+++|++|.+++.+....    .  .....||..++       
T Consensus       200 ~i~vgg~~~~~~----------~~~~iiDSGts~~~lp~~~~~~l~~~l~~~~~~----~--~~~~~~~~~~c-------  256 (342)
T d1eaga_         200 SVEVSGKTINTD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ----D--SNGNSFYEVDC-------  256 (342)
T ss_dssp             EEEETTEEEEEE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEE----C--TTSCEEEEEES-------
T ss_pred             eEEECCEEeccc----------ccccccccCCccccCCHHHHHHHHHHhCccccc----c--CCCCceecccc-------
Confidence            999999987642          246999999999999999999998887654421    1  11234555444       


Q ss_pred             CCcCcEEEEEcCCeEEEEecCCeEEEEcCC----CeEEEEEEeCCCCCCCceEEcccceeceEEEEeCCCCeEEEEeccC
Q 036447          249 PSVPPIDLVLQNNVSWSIIGANSIVRVNNN----DVSCLGFVDGGVRPMTSIVIGGHQLENNLLQFDLPSSRLGFSNSLL  324 (338)
Q Consensus       249 ~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~----~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~~  324 (338)
                      ...|+|+|+|.++..++|+|++|+++....    -..|.......    +.+|||+.|||++|+|||++++|||||+...
T Consensus       257 ~~~p~i~f~f~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~----~~~ILG~~fl~~~y~vfD~~~~~iGfA~a~~  332 (342)
T d1eaga_         257 NLSGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVN----DANILGDNFLRSAYIVYDLDDNEISLAQVKY  332 (342)
T ss_dssp             CCCSEEEEECSTTCEEEEEGGGGEEEC---CCSCTTEEEECEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEECC
T ss_pred             ccCCCEEEEECCCEEEEEChHHeEEEecCCCCceeeEEEEccCCC----CCcEECHHhhCcEEEEEECCCCEEEEEECCC
Confidence            357999999998899999999999876221    13576443322    4789999999999999999999999998655


Q ss_pred             ccccCC
Q 036447          325 FQRTVC  330 (338)
Q Consensus       325 ~~~~~C  330 (338)
                      .-.+++
T Consensus       333 ~~~~~~  338 (342)
T d1eaga_         333 TSASSI  338 (342)
T ss_dssp             CSCCCE
T ss_pred             CCCCCE
Confidence            433433


No 8  
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}
Probab=100.00  E-value=2.3e-37  Score=288.59  Aligned_cols=262  Identities=16%  Similarity=0.128  Sum_probs=190.2

Q ss_pred             CCccccCcCCCCCCC-------CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC
Q 036447            2 CGSAQCNLANAKACG-------GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL   74 (338)
Q Consensus         2 C~s~~C~~~~~~~C~-------~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~   74 (338)
                      |.+..|...+.+.+.       .+.+.|.+.|+ +|+.+.|.+++|+|++++.         +++++.|+|+........
T Consensus        48 c~~~~c~~~~~y~~~~SsT~~~~~~~~~~~~Y~-~G~~~~G~~~~D~v~~~~~---------~~~~~~f~~~~~~~~~~~  117 (330)
T d1oewa_          48 TTASEVDGQTIYTPSKSTTAKLLSGATWSISYG-DGSSSSGDVYTDTVSVGGL---------TVTGQAVESAKKVSSSFT  117 (330)
T ss_dssp             SCGGGC--CCCBCGGGCTTCEEEEEEEEEEECT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEECHHHH
T ss_pred             CCchhhcCCCccCccccccccccCCCeEEEEeC-CCCcEEEEEEEEEEEeecc---------eecceEEEEeeecccccc
Confidence            666666554433322       24578999997 9999999999999999985         788899999986531111


Q ss_pred             -CCCcceEEecCCCCCchHHH-------HhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447           75 -ANGVVGIAGLGRSKVALPLQ-------LAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF  145 (338)
Q Consensus        75 -~~~~~GIlGLg~~~~s~~~q-------l~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~  145 (338)
                       ....+||||||+...+...+       ...++.+ .+.||+||.+.   ..|.|+||++|.     .++.+++.|+|+.
T Consensus       118 ~~~~~~GilGlg~~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~---~~g~l~~Gg~d~-----~~~~g~~~~~~~~  189 (330)
T d1oewa_         118 EDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYH---APGTYNFGFIDT-----TAYTGSITYTAVS  189 (330)
T ss_dssp             HCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTTSSSSEEEEECCSS---SCEEEEESCCCT-----TSSSSCCEEEECB
T ss_pred             ccCCcccccccccCcccccCccccccHHHhhhhhhcccceeeecccc---cCCceeeccccc-----ccccCcceeeecc
Confidence             24689999999865432211       1112344 68999999874   479999999994     3678999999987


Q ss_pred             cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447          146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT  225 (338)
Q Consensus       146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~  225 (338)
                      ..            ..+|.|.+++|.|+++.+...          +..+||||||++++||++++++|.+++....    
T Consensus       190 ~~------------~~~~~v~l~~i~v~~~~~~~~----------~~~~iiDSGts~~~lp~~~~~~i~~~~~~~~----  243 (330)
T d1oewa_         190 TK------------QGFWEWTSTGYAVGSGTFKST----------SIDGIADTGTTLLYLPATVVSAYWAQVSGAK----  243 (330)
T ss_dssp             CT------------TSSCEEEEEEEEETTSCCEEE----------EEEEEECTTCCSEEECHHHHHHHHTTSTTCE----
T ss_pred             CC------------CCceEEEEeEEEEEeeeeecC----------CcceeeccccccccCCHHHHHHHHHHccCcc----
Confidence            53            478999999999999876421          2469999999999999999998876653211    


Q ss_pred             ccCCC-CCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCCCCCceEEcccc
Q 036447          226 RVAPV-APLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVRPMTSIVIGGHQ  302 (338)
Q Consensus       226 ~~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~~~~~~ILG~~f  302 (338)
                      ..... .....|.           ..+|+|+|+|+| .++.||++.|++... .....|+ ++.....  .+.+|||++|
T Consensus       244 ~~~~~~~~~~~C~-----------~~~P~i~f~f~g-~~~~lp~~~~~~~~~~~~~~~C~~~i~~~~~--~~~~ILG~~f  309 (330)
T d1oewa_         244 SSSSVGGYVFPCS-----------ATLPSFTFGVGS-ARIVIPGDYIDFGPISTGSSSCFGGIQSSAG--IGINIFGDVA  309 (330)
T ss_dssp             EETTTTEEEEETT-----------CCCCCEEEEETT-EEEEECHHHHEEEESSTTCSEEEESEEESTT--TSSEEECHHH
T ss_pred             cCcccceEEeccc-----------CCCCcEEEEECC-EEEecCHHHeeEEEecCCCCEEEEEEECCCC--CCCEEECHHH
Confidence            11111 1122442           368999999965 999998876666542 3456898 5665443  3579999999


Q ss_pred             eeceEEEEeC-CCCeEEEEe
Q 036447          303 LENNLLQFDL-PSSRLGFSN  321 (338)
Q Consensus       303 l~~~~vvfD~-~~~rIGfa~  321 (338)
                      ||++|+|||. +++|||||.
T Consensus       310 lr~~y~vfD~~~~~~IGfA~  329 (330)
T d1oewa_         310 LKAAFVVFNGATTPTLGFAS  329 (330)
T ss_dssp             HTTEEEEEECSSSCEEEEEE
T ss_pred             hCCEEEEEECCCCCEEEEec
Confidence            9999999998 667899996


No 9  
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}
Probab=100.00  E-value=3.6e-37  Score=285.50  Aligned_cols=259  Identities=15%  Similarity=0.114  Sum_probs=194.4

Q ss_pred             CCccccCcCCCC-----CCCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-CC
Q 036447            2 CGSAQCNLANAK-----ACGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-LA   75 (338)
Q Consensus         2 C~s~~C~~~~~~-----~C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-~~   75 (338)
                      |.+..|...+.+     .|....|.|++.|+ +|+.+.|.+++|++++++.         +++++.|++........ ..
T Consensus        46 C~~~~~~~~~~~~~~sSt~~~~~~~~~i~Y~-~G~~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  115 (323)
T d1izea_          46 TPSSERSGHDYYTPGSSAQKIDGATWSISYG-DGSSASGDVYKDKVTVGGV---------SYDSQAVESAEKVSSEFTQD  115 (323)
T ss_dssp             SCHHHHTTSCCBCCCTTCEEEEEEEEEEECT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEECHHHHHC
T ss_pred             CCChhhcCCCccCccccccccCCCEEEEEcC-CcceeeeEEEeeeeeccCc---------cccceEEEEEEeccCccccc
Confidence            555556554322     22356799999998 9999999999999999986         78889999987653221 13


Q ss_pred             CCcceEEecCCCCCc---------hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447           76 NGVVGIAGLGRSKVA---------LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF  145 (338)
Q Consensus        76 ~~~~GIlGLg~~~~s---------~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~  145 (338)
                      ...+||||||+...+         +..++.  ..+ +++|++||.+.   ..|.|+||++|.     .++.+++.|+|+.
T Consensus       116 ~~~dGilGLg~~~~~~~~~~~~~~~~~~~~--~~~~~~~fs~~l~~~---~~g~l~~Gg~d~-----~~~~g~~~~~~~~  185 (323)
T d1izea_         116 TANDGLLGLAFSSINTVQPTPQKTFFDNVK--SSLSEPIFAVALKHN---APGVYDFGYTDS-----SKYTGSITYTDVD  185 (323)
T ss_dssp             TTCCEEEECSCGGGCCCBSSCCCCHHHHHG--GGSSSSEEEEECCTT---SCEEEEESSCCT-----TSEEEEEEEEECB
T ss_pred             cccccccccccccccccCcccchHHHHhhh--hhcCcceEEEEccCC---CCeeEEccccCc-----ccccCcceeeeec
Confidence            468999999986543         222222  223 68999999874   479999999995     3678999999987


Q ss_pred             cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447          146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT  225 (338)
Q Consensus       146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~  225 (338)
                      ..            ..+|.|.+.+|+|+++....           ...+||||||++++||+++|+++.+++....    
T Consensus       186 ~~------------~~~~~v~~~~i~v~~~~~~~-----------~~~~ivDSGts~~~lp~~~~~~~~~~~~~~~----  238 (323)
T d1izea_         186 NS------------QGFWGFTADGYSIGSDSSSD-----------SITGIADTGTTLLLLDDSIVDAYYEQVNGAS----  238 (323)
T ss_dssp             CT------------TSSCEEEESEEEETTEEECC-----------CEEEEECTTCCSEEECHHHHHHHHTTSTTCE----
T ss_pred             CC------------CceEEEEeceEEECCCcccc-----------CceEEeccCCccccCCHHHHHHHHHHcCCcc----
Confidence            53            47899999999999987643           2469999999999999999998876653321    


Q ss_pred             ccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEccccee
Q 036447          226 RVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLE  304 (338)
Q Consensus       226 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~  304 (338)
                      ... ......|..   .      ..+|+|+|+|+| ++++||+++|++.. .++..|+ ++.....  .+.+|||+.|||
T Consensus       239 ~~~-~~~~~~~~~---~------~~~p~i~f~f~g-~~~~ip~~~~~~~~-~~~~~C~~~i~~~~~--~~~~iLG~~flr  304 (323)
T d1izea_         239 YDS-SQGGYVFPS---S------ASLPDFSVTIGD-YTATVPGEYISFAD-VGNGQTFGGIQSNSG--IGFSIFGDVFLK  304 (323)
T ss_dssp             EET-TTTEEEEET---T------CCCCCEEEEETT-EEEEECHHHHEEEE-CSTTEEEESEEECTT--TSSEEECHHHHT
T ss_pred             ccC-CCCcEEeec---c------cCCceEEEEECC-EEEEcChHHEEEEe-CCCCEEEEEEECCCC--CCCEEECHHHhC
Confidence            011 111123322   1      468999999965 99999999998876 5556787 5655443  367999999999


Q ss_pred             ceEEEEeCCCCeEEEEe
Q 036447          305 NNLLQFDLPSSRLGFSN  321 (338)
Q Consensus       305 ~~~vvfD~~~~rIGfa~  321 (338)
                      ++|+|||+|++|||||+
T Consensus       305 ~~y~vfD~~~~~IGfA~  321 (323)
T d1izea_         305 SQYVVFDASGPRLGFAA  321 (323)
T ss_dssp             TEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCEEEEcc
Confidence            99999999999999997


No 10 
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}
Probab=100.00  E-value=7.4e-36  Score=276.54  Aligned_cols=262  Identities=16%  Similarity=0.185  Sum_probs=198.9

Q ss_pred             CCccccCcCCCCCC------CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-
Q 036447            2 CGSAQCNLANAKAC------GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-   74 (338)
Q Consensus         2 C~s~~C~~~~~~~C------~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-   74 (338)
                      |.+..|...+.+.|      ....|.|.+.|+ + +.++|.+++|++++++.         ++.++.|+|++....... 
T Consensus        45 C~~~~~~~~~~f~p~~Sst~~~~~~~~~~~y~-~-g~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~  113 (324)
T d1am5a_          45 CSAQACSNHNKFKPRQSSTYVETGKTVDLTYG-T-GGMRGILGQDTVSVGGG---------SDPNQELGESQTEPGPFQA  113 (324)
T ss_dssp             CCSHHHHTSCCBCGGGCTTCEEEEEEEEEECS-S-CEEEEEEEEEEEESSSS---------CEEEEEEEEEEECCSTTTT
T ss_pred             CCccccCCCCCCCcccCCceeECCcceEEEec-C-CceEEEEEEeecccCcc---------cceeEEEEEeeeeccceee
Confidence            55555555444444      355689999997 5 46999999999999986         677889999987743222 


Q ss_pred             CCCcceEEecCCCCC------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccC
Q 036447           75 ANGVVGIAGLGRSKV------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFIN  147 (338)
Q Consensus        75 ~~~~~GIlGLg~~~~------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~  147 (338)
                      ....+||+|||++..      ++..++..++.| ++.||+||.+.. ...|.|+||++|.     .++.+++.|+|+.. 
T Consensus       114 ~~~~~Gi~gLg~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~-~~~g~l~~Gg~d~-----~~~~~~~~~~p~~~-  186 (324)
T d1am5a_         114 AAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG-ANGSEVMLGGVDN-----SHYTGSIHWIPVTA-  186 (324)
T ss_dssp             TCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTT-CSCEEEEESSCCG-----GGBCSCCEEEEEEE-
T ss_pred             cccccccccccCcccccCCCCcHHHHHHhccCcccceEEEEecCCC-CCCceEEeecccc-----ccccCceEEeeccc-
Confidence            346799999997643      366778777777 789999998653 5689999999985     36788999999875 


Q ss_pred             CCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCccc
Q 036447          148 PVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRV  227 (338)
Q Consensus       148 ~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~  227 (338)
                                  ..+|.|.++++.++++.+...          +..+||||||++++||+++|++|.+++......    
T Consensus       187 ------------~~~~~v~~~~~~~~~~~~~~~----------~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~~----  240 (324)
T d1am5a_         187 ------------EKYWQVALDGITVNGQTAACE----------GCQAIVDTGTSKIVAPVSALANIMKDIGASENQ----  240 (324)
T ss_dssp             ------------ETTEEEEECEEEETTEECCCC----------CEEEEECTTCSSEEECTTTHHHHHHHHTCEECC----
T ss_pred             ------------cceEEEEEeeEEeCCcccccC----------CcceeeccCcccccCCHHHHHHHHHHhCCcccC----
Confidence                        368999999999999876532          257999999999999999999998888543211    


Q ss_pred             CCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCC--CCCceEEccccee
Q 036447          228 APVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVR--PMTSIVIGGHQLE  304 (338)
Q Consensus       228 ~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~  304 (338)
                       . .....|...         ..+|+|+|+|+| .+++|+|++|+...   ...|. ++...+..  ..+.+|||+.|||
T Consensus       241 -~-~~~~~~~~~---------~~~P~i~f~f~g-~~~~l~~~~y~~~~---~~~c~~~i~~~~~~~~~~~~~ILG~~fl~  305 (324)
T d1am5a_         241 -G-EMMGNCASV---------QSLPDITFTING-VKQPLPPSAYIEGD---QAFCTSGLGSSGVPSNTSELWIFGDVFLR  305 (324)
T ss_dssp             -C-CEECCTTSS---------SSSCCEEEEETT-EEEEECHHHHEEES---SSCEEECEEECCSCCSSSCEEEECHHHHH
T ss_pred             -C-ccccccccc---------ccCCceEEEECC-EEEEECHHHhEecC---CCeEEEEEEecCcCCCCCCCEEECHHhhc
Confidence             0 111111111         468999999965 99999999998653   34565 56654321  2467899999999


Q ss_pred             ceEEEEeCCCCeEEEEec
Q 036447          305 NNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       305 ~~~vvfD~~~~rIGfa~~  322 (338)
                      ++|++||++++|||||++
T Consensus       306 ~~y~vfD~~~~~igfA~a  323 (324)
T d1am5a_         306 NYYTIYDRTNNKVGFAPA  323 (324)
T ss_dssp             HEEEEEETTTTEEEEEEB
T ss_pred             CEEEEEECCCCEEEEEEc
Confidence            999999999999999973


No 11 
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.4e-36  Score=282.98  Aligned_cols=253  Identities=14%  Similarity=0.183  Sum_probs=191.1

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC------c
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV------A   90 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~------s   90 (338)
                      ...|.|.+.|+ +| ++.|.+++|+|++++.         ++.+..+++.............+||+|||+...      +
T Consensus        71 ~~~~~~~~~Y~-~g-s~~G~~~~D~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Gi~glg~~~~~~~~~~~  139 (335)
T d1smra_          71 ENGDDFTIHYG-SG-RVKGFLSQDSVTVGGI---------TVTQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTP  139 (335)
T ss_dssp             EEEEEEEEEET-TE-EEEEEEEEEEEEETTE---------EEEEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCC
T ss_pred             cCCCcEEEEec-Cc-eEEEEEEEEEEEeccc---------ccccEEEEEEecccccccccccccccccccccccccCCCc
Confidence            45689999997 66 6899999999999885         555544444433321222356899999998653      3


Q ss_pred             hHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEE
Q 036447           91 LPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKS  169 (338)
Q Consensus        91 ~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~  169 (338)
                      +..+|..+..+ ++.||+||.+......|.|+||++|.     .++.+++.|+|+..             ..+|.|.+.+
T Consensus       140 ~~~~l~~~~~i~~~~fs~~l~~~~~~~~g~l~~G~~d~-----~~~~~~~~~~~~~~-------------~~~~~v~~~~  201 (335)
T d1smra_         140 VFDHILSQGVLKEKVFSVYYNRGPHLLGGEVVLGGSDP-----QHYQGDFHYVSLSK-------------TDSWQITMKG  201 (335)
T ss_dssp             HHHHHHHTTCBSSSEEEEEECCSSSSCCEEEEESSCCG-----GGEEEEEEEEECSB-------------TTTTEEEEEE
T ss_pred             hHHHHHHhcCccccceeEEeccCCCccceeEeccccCc-----ccccCceeeeeccc-------------ccceEEEEeE
Confidence            56677777776 68999999876445679999999984     36788999999864             3689999999


Q ss_pred             EEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCCC
Q 036447          170 IRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFGP  249 (338)
Q Consensus       170 i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~  249 (338)
                      |.++++.+....         ...+||||||++++||+++|++|.+++.+...     ........|+..         .
T Consensus       202 i~~~~~~~~~~~---------~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~c~~~---------~  258 (335)
T d1smra_         202 VSVGSSTLLCEE---------GCEVVVDTGSSFISAPTSSLKLIMQALGAKEK-----RLHEYVVSCSQV---------P  258 (335)
T ss_dssp             EEETTSCCBCTT---------CEEEEECTTBSSEEECHHHHHHHHHHHTCEEE-----ETTEEEEEGGGG---------G
T ss_pred             EEECCeeEeccC---------CceEEEeCCCCcccCCHHHHHHHHHHhCCeec-----cCCceeeccccc---------C
Confidence            999998765332         35799999999999999999999998854321     111223456654         3


Q ss_pred             CcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCC--CCCceEEcccceeceEEEEeCCCCeEEEEec
Q 036447          250 SVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVR--PMTSIVIGGHQLENNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       250 ~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~  322 (338)
                      .+|+|+|+|+| ++++|+|++|+++.. ..+..|+ ++...+..  ..+.+|||+.|||++|+|||++++|||||++
T Consensus       259 ~~P~i~f~f~g-~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~a  334 (335)
T d1smra_         259 TLPDISFNLGG-RAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA  334 (335)
T ss_dssp             GSCCEEEEETT-EEEEECHHHHBTT----CCCEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CCCccEEEECC-eEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEEc
Confidence            68999999965 999999999986542 3457897 56544322  2467999999999999999999999999974


No 12 
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}
Probab=100.00  E-value=2.5e-36  Score=279.60  Aligned_cols=260  Identities=16%  Similarity=0.133  Sum_probs=193.7

Q ss_pred             CCccccCcCCCCCCC-----CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-C
Q 036447            2 CGSAQCNLANAKACG-----GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-A   75 (338)
Q Consensus         2 C~s~~C~~~~~~~C~-----~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-~   75 (338)
                      |.+..|...+.+.++     .+.|.|++.|+ +|+.+.|.++.|++++++.         ++.++.|++......... .
T Consensus        46 C~~c~~~~~~~y~~s~Sst~~~~~~~~~~Y~-~G~~~~G~~~~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  115 (323)
T d1bxoa_          46 LPASQQSGHSVYNPSATGKELSGYTWSISYG-DGSSASGNVFTDSVTVGGV---------TAHGQAVQAAQQISAQFQQD  115 (323)
T ss_dssp             SCHHHHTTSCCBCHHHHCEEEEEEEEEEECT-TSCEEEEEEEEEEEEETTE---------EEEEEEEEEEEEECHHHHTC
T ss_pred             CCchhhcCCCCCCCcccccccCCCEEEEEeC-CCCcEEEEEEEEeeeccCc---------ccccceeeeeeeeecccccc
Confidence            555555544434332     35699999997 9999999999999999985         777889999876532211 3


Q ss_pred             CCcceEEecCCCCCch---------HHHHhhhcCCCceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447           76 NGVVGIAGLGRSKVAL---------PLQLAAAFSFDRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI  146 (338)
Q Consensus        76 ~~~~GIlGLg~~~~s~---------~~ql~~~~~i~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~  146 (338)
                      ...+||||||++..+.         ...+. .....+.|++++...   ..|.|+||++|.     .++.+++.|+|+..
T Consensus       116 ~~~~GilGlg~~~~s~~~~~~~~~~~~~~~-~~~~~~~fs~~~~~~---~~g~l~~Gg~d~-----~~~~~~~~~~~~~~  186 (323)
T d1bxoa_         116 TNNDGLLGLAFSSINTVQPQSQTTFFDTVK-SSLAQPLFAVALKHQ---QPGVYDFGFIDS-----SKYTGSLTYTGVDN  186 (323)
T ss_dssp             TTCSEEEECSCGGGCCCBSSCCCCHHHHHG-GGBSSSEEEEECCSS---SCEEEEESSCCG-----GGBSSCCEEEECBC
T ss_pred             cccccccccccCcccccCCCcCchHHHHHh-hhcccceeeeccccC---CCceeeeecccc-----ccccCceeeeeccC
Confidence            4679999999865432         22222 222368999998763   579999999995     36789999999876


Q ss_pred             CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447          147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR  226 (338)
Q Consensus       147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~  226 (338)
                      .            ..+|.+.+++|.|+++...            ...++|||||++++||.++|++|.+++.+....   
T Consensus       187 ~------------~~~~~~~~~~i~v~~~~~~------------~~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~---  239 (323)
T d1bxoa_         187 S------------QGFWSFNVDSYTAGSQSGD------------GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQD---  239 (323)
T ss_dssp             T------------TSSCEEEEEEEEETTEEEE------------EEEEEECTTCSSEEECHHHHHHHHTTSTTCEEE---
T ss_pred             c------------ccceeEeeeeEEECCEecC------------CcceEEecccccccCCHHHHHHHHHHhCCcccc---
Confidence            3            4789999999999987643            146999999999999999999987665432110   


Q ss_pred             cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEcccceec
Q 036447          227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLEN  305 (338)
Q Consensus       227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~  305 (338)
                      .........|.           ..+|+|+|+|+| ++++|++++|++....++..|+ ++.....  .+.+|||++|||+
T Consensus       240 ~~~~~~~~~c~-----------~~~p~itf~f~g-~~~~i~~~~~~~~~~~~~~~C~~~i~~~~~--~~~~ILG~~flr~  305 (323)
T d1bxoa_         240 SNAGGYVFDCS-----------TNLPDFSVSISG-YTATVPGSLINYGPSGDGSTCLGGIQSNSG--IGFSIFGDIFLKS  305 (323)
T ss_dssp             TTTTEEEECTT-----------CCCCCEEEEETT-EEEEECHHHHEEEECSSSSCEEESEEECTT--CSSEEECHHHHTT
T ss_pred             CCCCcEEEecc-----------CCCCcEEEEECC-EEEEEChHHeEEEEcCCCCEEEEEEECCCC--CCcEEECHHHhCC
Confidence            01111112333           358999999975 9999999999887645567898 4655443  3579999999999


Q ss_pred             eEEEEeCCCCeEEEEe
Q 036447          306 NLLQFDLPSSRLGFSN  321 (338)
Q Consensus       306 ~~vvfD~~~~rIGfa~  321 (338)
                      +|+|||+|++|||||+
T Consensus       306 ~y~vfD~~~~~IGfAp  321 (323)
T d1bxoa_         306 QYVVFDSDGPQLGFAP  321 (323)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEeEEe
Confidence            9999999999999997


No 13 
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}
Probab=100.00  E-value=1.2e-35  Score=280.89  Aligned_cols=264  Identities=13%  Similarity=0.191  Sum_probs=199.4

Q ss_pred             CCCccccCcCCCCCC------CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-
Q 036447            1 RCGSAQCNLANAKAC------GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-   73 (338)
Q Consensus         1 ~C~s~~C~~~~~~~C------~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-   73 (338)
                      .|.+..|...+.+.|      ....|.|.+.|+ + +.++|.+++|+|++++.         +++++.|+++....... 
T Consensus        92 ~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~-~-G~~~G~~~~D~v~ig~~---------~~~~~~~~~~~~~~~~~~  160 (373)
T d1miqa_          92 KCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYG-S-GTVKGFFSKDLVTLGHL---------SMPYKFIEVTDTDDLEPI  160 (373)
T ss_dssp             TCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEET-T-EEEEEEEEEEEEEETTE---------EEEEEEEEEEECGGGTTH
T ss_pred             CCCCccccCCCccCCCCCCceeECCccEEEEeC-C-cEEEEEEEEEEEEEcCc---------ceEeeEEEEEeccccCcc
Confidence            377777766654433      356899999997 5 57999999999999986         77778887765542111 


Q ss_pred             -CCCCcceEEecCCCCC------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447           74 -LANGVVGIAGLGRSKV------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF  145 (338)
Q Consensus        74 -~~~~~~GIlGLg~~~~------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~  145 (338)
                       .....+|++||+....      .+..++..+..+ +++||+|+.+.. ...|.|+|||+|.     .++.+++.|+|+.
T Consensus       161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~-~~~g~l~~Gg~d~-----~~~~g~~~~~pv~  234 (373)
T d1miqa_         161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD-VHAGYLTIGGIEE-----KFYEGNITYEKLN  234 (373)
T ss_dssp             HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTC-TTEEEEEESSCCG-----GGEEEEEEEEEBS
T ss_pred             ccccccccccccccccccCCCccceehhhhhhhccccceEEEEeccCC-CCCceeeccCCCc-----hhccceeeEEecc
Confidence             1346789999998653      355666666666 789999998764 5689999999994     3678999999986


Q ss_pred             cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447          146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT  225 (338)
Q Consensus       146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~  225 (338)
                      .             ..+|.|.+. +.+++....            ...+||||||+++++|+++|++|.+++......  
T Consensus       235 ~-------------~~~w~i~l~-~~~~~~~~~------------~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~--  286 (373)
T d1miqa_         235 H-------------DLYWQIDLD-VHFGKQTME------------KANVIVDSGTTTITAPSEFLNKFFANLNVIKVP--  286 (373)
T ss_dssp             S-------------SSSSEEEEE-EEETTEEEE------------EEEEEECTTBSSEEECHHHHHHHHHHHTCEECT--
T ss_pred             c-------------cceEEEEEE-EEECcEecC------------CcceEeccCCceeccCHHHHHHHHHHhCCeecc--
Confidence            4             478999985 666666543            246999999999999999999999888644321  


Q ss_pred             ccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCCCCCceEEcccce
Q 036447          226 RVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVRPMTSIVIGGHQL  303 (338)
Q Consensus       226 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~~~~~~ILG~~fl  303 (338)
                         ....+..|...         ..+|+|+|+|+| ++|+|+|++|+.+.. .++..|+ ++...+.. .+.||||++||
T Consensus       287 ---~~~~~~~~~~~---------~~~P~itf~f~g-~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~-~~~~ILG~~fl  352 (373)
T d1miqa_         287 ---FLPFYVTTCDN---------KEMPTLEFKSAN-NTYTLEPEYYMNPILEVDDTLCMITMLPVDID-SNTFILGDPFM  352 (373)
T ss_dssp             ---TSSCEEEETTC---------TTCCCEEEECSS-CEEEECGGGSEEESSSSSCSEEEESEEECCSS-SSEEEECHHHH
T ss_pred             ---CCCeeEecccc---------CCCceEEEEECC-EEEEECHHHeeEEEEeCCCCEEEEEEEECCCC-CCCEEEcHHhh
Confidence               11112233322         468999999975 999999999998752 3356675 77776543 46799999999


Q ss_pred             eceEEEEeCCCCeEEEEecc
Q 036447          304 ENNLLQFDLPSSRLGFSNSL  323 (338)
Q Consensus       304 ~~~~vvfD~~~~rIGfa~~~  323 (338)
                      |++|+|||++++|||||++.
T Consensus       353 ~~~y~vfD~~~~rIGfA~ak  372 (373)
T d1miqa_         353 RKYFTVFDYDKESVGFAIAK  372 (373)
T ss_dssp             HHEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEEEECCCCEEEEEEcC
Confidence            99999999999999999753


No 14 
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.4e-35  Score=280.30  Aligned_cols=268  Identities=19%  Similarity=0.203  Sum_probs=197.5

Q ss_pred             CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-CCCcceEEecCCCCCc----
Q 036447           16 GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-ANGVVGIAGLGRSKVA----   90 (338)
Q Consensus        16 ~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-~~~~~GIlGLg~~~~s----   90 (338)
                      ....|.|.+.|+ +| .+.|.+++|+|+|++...      +... ..|++.+....... ....+||||||++..+    
T Consensus        63 ~~~~~~~~i~Y~-~g-~~~G~~~~D~v~i~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~  133 (387)
T d2qp8a1          63 RDLRKGVYVPYT-QG-KWEGELGTDLVSIPHGPN------VTVR-ANIAAITESDKFFINGSNWEGILGLAYAEIARPDD  133 (387)
T ss_dssp             EEEEEEEEEECS-SC-EEEEEEEEEEEECTTSCS------CEEE-EEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCT
T ss_pred             EeCCCcEEEEeC-Cc-cEEEEEEEEEEEEcCCCc------eeEe-EEEEEEEecCCcccccccccccccccccccccCCC
Confidence            356789999997 54 789999999999986421      1333 33444333311222 3578999999986644    


Q ss_pred             ----hHHHHhhhcCCCceeEEecCCCC---------CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCC
Q 036447           91 ----LPLQLAAAFSFDRKFAICLSPAF---------PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLG  157 (338)
Q Consensus        91 ----~~~ql~~~~~i~~~FS~cl~~~~---------~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~  157 (338)
                          +...+..+..++++||+||.+..         ...+|+|+||++|.     .++.++++|+|+..           
T Consensus       134 ~~~~~~~~l~~~~~~~~~fs~~l~~~~~~~~~~~~~~~~~G~l~~Gg~d~-----~~~~g~~~~~~~~~-----------  197 (387)
T d2qp8a1         134 SLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDH-----SLYTGSLWYTPIRR-----------  197 (387)
T ss_dssp             TSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCG-----GGEEEEEEEEECCS-----------
T ss_pred             CCCchHHHHhhccCcceeEeEeeccccccccccccccCCCceeEeccccc-----ccccCceEeecccc-----------
Confidence                33456666556889999998642         13579999999995     36789999999764           


Q ss_pred             CCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccC--CCCCCcc
Q 036447          158 DPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVA--PVAPLGA  235 (338)
Q Consensus       158 ~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~--~~~~~~~  235 (338)
                        +.+|.+.+.+|.|+++.+......     .....++|||||++++||+++|++|.++|.+.........  .......
T Consensus       198 --~~~~~v~~~~i~v~g~~~~~~~~~-----~~~~~aiiDSGts~i~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (387)
T d2qp8a1         198 --EWYYEVIIVRVEINGQDLKMDCKE-----YNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLV  270 (387)
T ss_dssp             --BTTBBCCEEEEEETTEECCCCGGG-----GGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCE
T ss_pred             --cceeEEEEEEEEECCEeccccccc-----CCccceEEecCCCeEeCCHHHHHHHHHHhcccccccccCCccccceeee
Confidence              368999999999999998754322     1235799999999999999999999999998775311111  1123457


Q ss_pred             cccccccccCCCCCCcCcEEEEEcCC-----eEEEEecCCeEEEEcC---CCeEEEEEEeCCCCCCCceEEcccceeceE
Q 036447          236 CFKSSDIVSSRFGPSVPPIDLVLQNN-----VSWSIIGANSIVRVNN---NDVSCLGFVDGGVRPMTSIVIGGHQLENNL  307 (338)
Q Consensus       236 C~~~~~~~~~~~~~~~P~i~f~f~gg-----~~~~i~~~~yl~~~~~---~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~~  307 (338)
                      |+.....+.    ..+|.++|.|.+.     ..++|+|++|+++...   ....|+.+.....  ...+|||++|||++|
T Consensus       271 C~~~~~~~~----~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~c~~~~~~~~--~~~~ILG~~Flr~~y  344 (387)
T d2qp8a1         271 CWQAGTTPW----NIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS--STGTVMGAVIMEGFY  344 (387)
T ss_dssp             EESTTCCCG----GGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE--SSCEEECHHHHTTEE
T ss_pred             eeecCCCcc----ccccceEEEeccccccceEEEEECHHHheeeccccCCcCceEEEEEeCCC--CCCEEEhHHhhCcEE
Confidence            887765433    5689999999863     5799999999988732   2367886554332  357999999999999


Q ss_pred             EEEeCCCCeEEEEe
Q 036447          308 LQFDLPSSRLGFSN  321 (338)
Q Consensus       308 vvfD~~~~rIGfa~  321 (338)
                      +|||++++|||||+
T Consensus       345 ~vfD~~~~~IGfA~  358 (387)
T d2qp8a1         345 VVFDRARKRIGFAV  358 (387)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEEE
Confidence            99999999999995


No 15 
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}
Probab=100.00  E-value=1e-34  Score=272.71  Aligned_cols=258  Identities=15%  Similarity=0.175  Sum_probs=195.7

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccc-----c-CCCCCcceEEecCCCCC-
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVL-----Q-GLANGVVGIAGLGRSKV-   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~-----~-~~~~~~~GIlGLg~~~~-   89 (338)
                      ...|.|.+.|+ + +++.|.+++|++++++.         .++++.|++++....     . ......+||+||++... 
T Consensus        69 ~~~~~~~~~y~-~-g~~~G~~~~d~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~  137 (357)
T d1mppa_          69 ETDYNLNITYG-T-GGANGIYFRDSITVGGA---------TVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNT  137 (357)
T ss_dssp             EEEEEEEEECS-S-CEEEEEEEEEEEEETTE---------EEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGS
T ss_pred             cCCcceEEecC-C-CcEEEEEEeeecccccc---------eECcEEEEEEEeecccceecccccccccccccccccCCcc
Confidence            45688999997 5 57999999999999985         788899998876421     0 11346789999998653 


Q ss_pred             -----------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCC
Q 036447           90 -----------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLG  157 (338)
Q Consensus        90 -----------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~  157 (338)
                                 +++.+|..++.+ +++||+||.+.  +..|.|+||++|.     .++.+++.|+|+.....        
T Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~--~~~G~l~~Gg~d~-----~~~~~~~~~~pi~~~~~--------  202 (357)
T d1mppa_         138 AMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN--DGGGQVVFGGVNN-----TLLGGDIQYTDVLKSRG--------  202 (357)
T ss_dssp             HHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS--SSEEEEEESSCCG-----GGBSSCCEEEECEEETT--------
T ss_pred             ccccccCCCCCCHHHHHHhccccccceEEEEeccC--CCCceEECcccCh-----hHcCCceeEEEeccCCC--------
Confidence                       467788888877 68999999765  4689999999994     36789999999986431        


Q ss_pred             CCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccc
Q 036447          158 DPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACF  237 (338)
Q Consensus       158 ~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~  237 (338)
                       ...+|.|.+++|+|+++.+....        +...+||||||++++||+++|++|.+++.+...   ... ......|.
T Consensus       203 -~~~~~~v~l~~i~v~g~~~~~~~--------~~~~~ilDSGts~~~lp~~~~~~i~~~~~~~~~---~~~-~~~~~~C~  269 (357)
T d1mppa_         203 -GYFFWDAPVTGVKIDGSDAVSFD--------GAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT---ESQ-QGYTVPCS  269 (357)
T ss_dssp             -EEEEEEEEEEEEEETTEEEEEEE--------EEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE---EET-TEEEEEHH
T ss_pred             -CceeEEEEEeeEEECCeEeeecC--------CCcceEeeccCccccCCHHHHHHHHHHhcCCcc---ccC-Cceecccc
Confidence             13479999999999998754211        124689999999999999999999888754321   111 11123565


Q ss_pred             cccccccCCCCCCcCcEEEEEcCC------eEEEEecCCeEEEEcCCCeEEE-EEEeCCCCCCCceEEcccceeceEEEE
Q 036447          238 KSSDIVSSRFGPSVPPIDLVLQNN------VSWSIIGANSIVRVNNNDVSCL-GFVDGGVRPMTSIVIGGHQLENNLLQF  310 (338)
Q Consensus       238 ~~~~~~~~~~~~~~P~i~f~f~gg------~~~~i~~~~yl~~~~~~~~~Cl-~~~~~~~~~~~~~ILG~~fl~~~~vvf  310 (338)
                      ...        +..|.++|.|...      .++.|++++|++.....+..|+ ++.+..   .+.+|||++|||++|+||
T Consensus       270 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~---~~~~ILG~~fl~~~yvvf  338 (357)
T d1mppa_         270 KYQ--------DSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG---GNQFIVGNLFLRFFVNVY  338 (357)
T ss_dssp             HHT--------TCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES---SSCCEEEHHHHTTEEEEE
T ss_pred             ccc--------ccCceEEEEEeccccccccEEEEEchHHeEEEecCCCCEEEEEEcCCC---CCCEEechHHhCCEEEEE
Confidence            433        4578888888742      5899999999988744556787 455543   257899999999999999


Q ss_pred             eCCCCeEEEEeccC
Q 036447          311 DLPSSRLGFSNSLL  324 (338)
Q Consensus       311 D~~~~rIGfa~~~~  324 (338)
                      |++++|||||+...
T Consensus       339 D~~~~~iGfA~~~~  352 (357)
T d1mppa_         339 DFGKNRIGFAPLAS  352 (357)
T ss_dssp             ETTTTEEEEEEBCT
T ss_pred             ECCCCEEEEEECCc
Confidence            99999999997543


No 16 
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=9e-35  Score=270.59  Aligned_cols=252  Identities=15%  Similarity=0.193  Sum_probs=192.6

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC------c
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV------A   90 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~------s   90 (338)
                      ...|.|.+.|+ + +++.|.+++|++++++.         ++.++.+++.............+||+|||+...      +
T Consensus        71 ~~~~~~~~~~~-~-g~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~GilGl~~~~~~~~~~~~  139 (337)
T d1hrna_          71 HNGTELTLRYS-T-GTVSGFLSQDIITVGGI---------TVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTP  139 (337)
T ss_dssp             EEEEEEEEEET-T-EEEEEEEEEEEEEETTE---------EEEEEEEEEEECCHHHHTTCSSCEEEECSCGGGCGGGCCC
T ss_pred             ECCccEEEEec-C-cEEEEEEEEeeeeecCc---------eeeeEEEEEEeccccccccccccccccccccccccCCCCc
Confidence            56799999997 4 47899999999999885         677777777655432222357899999998643      3


Q ss_pred             hHHHHhhhcCC-CceeEEecCCCC---CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEE
Q 036447           91 LPLQLAAAFSF-DRKFAICLSPAF---PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIG  166 (338)
Q Consensus        91 ~~~ql~~~~~i-~~~FS~cl~~~~---~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~  166 (338)
                      ++.++..+..+ ++.|++||.+..   ....|.|+||++|.     .++.+++.|+|+..             ..+|.|.
T Consensus       140 ~~~~l~~~~~i~~~~f~~~l~~~~~~~~~~~g~l~~G~~d~-----~~~~~~~~~~~~~~-------------~~~~~v~  201 (337)
T d1hrna_         140 IFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDP-----QHYEGNFHYINLIK-------------TGVWQIQ  201 (337)
T ss_dssp             HHHHHHTTTCBSSSEEEEEECCCCC---CCCEEEEETSCCG-----GGEEEEEEEEEBSS-------------TTSCEEE
T ss_pred             chhhHhhcCCCccceeeEEeccccCCCcccCceEEccccCh-----hhcCCceeeeeeec-------------cceeEEe
Confidence            56667666666 789999998753   24579999999985     36678999999874             4789999


Q ss_pred             EEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCC
Q 036447          167 VKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSR  246 (338)
Q Consensus       167 l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~  246 (338)
                      +.++.++++.+....         ...+||||||++++||+++|++|.+++.....      .......|+..       
T Consensus       202 ~~~~~~~~~~~~~~~---------~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~------~~~~~~~c~~~-------  259 (337)
T d1hrna_         202 MKGVSVGSSTLLCED---------GCLALVDTGASYISGSTSSIEKLMEALGAKKR------LFDYVVKCNEG-------  259 (337)
T ss_dssp             ECEEEETTEEEESTT---------CEEEEECTTCSSEEECHHHHHHHHHHHTCEEC------SSCEEEETTTG-------
T ss_pred             ecceecccccccccc---------CcceEEeCCCcceeccHHHHHHHHHHhCCccc------ccceeeecccc-------
Confidence            999999998765432         35699999999999999999999888754321      11112345432       


Q ss_pred             CCCCcCcEEEEEcCCeEEEEecCCeEEEEc-CCCeEEE-EEEeCCCC--CCCceEEcccceeceEEEEeCCCCeEEEEec
Q 036447          247 FGPSVPPIDLVLQNNVSWSIIGANSIVRVN-NNDVSCL-GFVDGGVR--PMTSIVIGGHQLENNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       247 ~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~-~~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~  322 (338)
                        ..+|+|+|+|+| ++++|+|++|+++.. .....|+ ++...+..  ..+.+|||+.|||++|+|||+|++|||||++
T Consensus       260 --~~~P~l~f~f~g-~~~~l~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~IGfA~a  336 (337)
T d1hrna_         260 --PTLPDISFHLGG-KEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA  336 (337)
T ss_dssp             --GGCCCEEEEETT-EEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             --CCCCceeEEECC-EEEEEChHHeEEEecCCCCCEEEEEEEcCCcCCCCCCCEEECHHhhCCEEEEEECCCCEEEEEEc
Confidence              368999999975 999999999988752 2356897 55544321  2467999999999999999999999999964


No 17 
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}
Probab=100.00  E-value=2.4e-34  Score=268.67  Aligned_cols=255  Identities=19%  Similarity=0.189  Sum_probs=188.9

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCCCCCcceEEecCCCCC-------
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGLANGVVGIAGLGRSKV-------   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~~~~~~GIlGLg~~~~-------   89 (338)
                      ...|.|.+.|+ +| ++.|.+++|+|++++.         +++++.|||++...  + ....+||+|||+...       
T Consensus        54 ~~~~~~~i~Y~-~g-s~~G~~~~D~~~~~~~---------~~~~~~fg~~~~~~--~-~~~~~gi~g~g~~~~~~~~~~~  119 (340)
T d1wkra_          54 ATSDKVSVTYG-SG-SFSGTEYTDTVTLGSL---------TIPKQSIGVASRDS--G-FDGVDGILGVGPVDLTVGTLSP  119 (340)
T ss_dssp             EEEEEEEEECS-SC-EEEEEEEEEEEEETTE---------EEEEEEEEEEEEEE--S-CTTCSEEEECSCGGGGTTSEES
T ss_pred             CCCCeEEEEeC-Ce-EEEEEEEEEEEeeCCe---------eeccEEEEEEEecc--C-cccccceecccccccccccccC
Confidence            45678999997 55 6899999999999885         78899999998763  2 246789999997532       


Q ss_pred             -------chHHHHhhhcCC-CceeEEecCCCC--CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCC
Q 036447           90 -------ALPLQLAAAFSF-DRKFAICLSPAF--PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDP  159 (338)
Q Consensus        90 -------s~~~ql~~~~~i-~~~FS~cl~~~~--~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~  159 (338)
                             +++.+|..++.+ +++|++||.+..  ....|.|+||++|.     .++.+++.|+||+....         .
T Consensus       120 ~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-----~~~~g~i~~~pv~~~~~---------~  185 (340)
T d1wkra_         120 HTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDS-----SKYTGSITYTPITSTSP---------A  185 (340)
T ss_dssp             CTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCG-----GGCSSCCEEEECCSSTT---------G
T ss_pred             ccccCcCchhhhHHhhhccchhheeeeecccCCCCCCCceEEccccCh-----hhcccceEEEEeecCCC---------C
Confidence                   356677777777 789999998653  24578999999995     36789999999986542         2


Q ss_pred             CcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccc
Q 036447          160 SVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKS  239 (338)
Q Consensus       160 ~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~  239 (338)
                      ..+|.|.++.+.++.+.+.-           +..+||||||++++||+++|++|.+++.+....    ........|.+.
T Consensus       186 ~~y~~i~~~~~~~~~~~~~~-----------~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~~c~~~  250 (340)
T d1wkra_         186 SAYWGINQSIRYGSSTSILS-----------STAGIVDTGTTLTLIASDAFAKYKKATGAVADN----NTGLLRLTTAQY  250 (340)
T ss_dssp             GGSSEEEEEEEETTTEEEEE-----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECT----TTSSEEECHHHH
T ss_pred             cceeEEEEEEEECCceEecc-----------CcceEEecCCccEeccHHHHHHHHHHhCccccC----CceEEEEecccc
Confidence            46899999777666665431           246999999999999999999999887643221    101111244432


Q ss_pred             cccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC------C--CeEEE-EEEeCCCCCCCceEEcccceeceEEEE
Q 036447          240 SDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN------N--DVSCL-GFVDGGVRPMTSIVIGGHQLENNLLQF  310 (338)
Q Consensus       240 ~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~------~--~~~Cl-~~~~~~~~~~~~~ILG~~fl~~~~vvf  310 (338)
                               +.+|+|+|+|+| .+++|++++|+.+...      .  ...|. +...........||||++|||++||+|
T Consensus       251 ---------~~~P~i~f~f~g-~~~~i~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvf  320 (340)
T d1wkra_         251 ---------ANLQSLFFTIGG-QTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVY  320 (340)
T ss_dssp             ---------HTCCCEEEEETT-EEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEE
T ss_pred             ---------CCCCceEEEECC-EEEEEChHHeEeeccCceeecCccceEEEEEecccCCCCCCCCEEechHHhCCEEEEE
Confidence                     368999999975 9999999999875411      1  12232 333222222457999999999999999


Q ss_pred             eCCCCeEEEEeccC
Q 036447          311 DLPSSRLGFSNSLL  324 (338)
Q Consensus       311 D~~~~rIGfa~~~~  324 (338)
                      |++++|||||++..
T Consensus       321 D~~~~~iGfA~~~~  334 (340)
T d1wkra_         321 DTTNKRLGLATTSF  334 (340)
T ss_dssp             ETTTTEEEEEECTT
T ss_pred             ECCCCEEEEEECCC
Confidence            99999999997554


No 18 
>g1lya.1 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1e-32  Score=255.44  Aligned_cols=256  Identities=17%  Similarity=0.201  Sum_probs=192.1

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccCC-CCCcceEEecCCCCC------
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQGL-ANGVVGIAGLGRSKV------   89 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~~-~~~~~GIlGLg~~~~------   89 (338)
                      ...|.|.+.|+ + +++.|.++.|+|+|+...+      .++.++.+++...+..... ....+||||||++..      
T Consensus        69 ~~~~~~~~~y~-~-gs~~G~~~~D~v~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~  140 (338)
T g1lya.1          69 KNGTSFDIHYG-S-GSLSGYLSQDTVSVPCQGG------VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVL  140 (338)
T ss_dssp             EEEEEEEEECS-S-CEEEEEEEEEEEEESCCCC------EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCC
T ss_pred             CCCcceEEecc-c-eEEEEEEEEEEEEECCcCc------eeeeeeEEEEecccccccccccccccccccCCCccccCCcC
Confidence            55799999997 5 4788999999999987532      2566677877766532222 346799999998654      


Q ss_pred             chHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEE
Q 036447           90 ALPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGV  167 (338)
Q Consensus        90 s~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l  167 (338)
                      ++..++..+..+ ...|++++.... ....|.|+||+++.     .++.+.+.|.|+..             ...|.|.+
T Consensus       141 ~~~~~l~~~~~i~~~~~s~~~~~~~~~~~~g~l~~G~~~~-----~~~~~~~~~~~~~~-------------~~~~~v~~  202 (338)
T g1lya.1         141 PVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDS-----KYYKGSLSYLNVTR-------------KAYWQVHL  202 (338)
T ss_dssp             CHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCG-----GGEEEEEEEEECSS-------------BTTBEEEE
T ss_pred             cHhHhhHhhcccccccceeEeccCCCCCCCceEEcCCcCc-----ccccccceeccccc-------------cceeEEee
Confidence            355666666666 678999998653 35679999999985     36788899998753             36799999


Q ss_pred             EEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCC
Q 036447          168 KSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRF  247 (338)
Q Consensus       168 ~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  247 (338)
                      .++.+++.......         ...++|||||++++||.++|++|.+++.+...    ... .....|...        
T Consensus       203 ~~~~~~~~~~~~~~---------~~~~~iDsgt~~~~lp~~~~~~l~~~l~~~~~----~~~-~~~~~~~~~--------  260 (338)
T g1lya.1         203 DQVEVASGLTLCKE---------GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL----IQG-EYMIPCEKV--------  260 (338)
T ss_dssp             EEEEETTSCEESTT---------CEEEEECTTCSSEEECHHHHHHHHHHHTCEEE----ETT-EEEEEGGGG--------
T ss_pred             eeEEECCceeecCC---------CeeEEeecCcceecCCHHHHHHHHHHHhheec----cCC-ceeeecccc--------
Confidence            99999987654322         34699999999999999999999998855432    111 111122221        


Q ss_pred             CCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEEE-EEeCCCC--CCCceEEcccceeceEEEEeCCCCeEEEEec
Q 036447          248 GPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCLG-FVDGGVR--PMTSIVIGGHQLENNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       248 ~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl~-~~~~~~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~  322 (338)
                       ..+|+|+|+|+| ++++|+|++|++.... +...|+. +...+..  ..+.+|||+.|||++|++||++++|||||++
T Consensus       261 -~~~p~i~f~f~g-~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~igfa~a  337 (338)
T g1lya.1         261 -STLPAITLKLGG-KGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA  337 (338)
T ss_dssp             -GGSCCEEEEETT-EEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             -CCCceEEEEECC-EEEEEChHHeEEEEccCCCcEEEEEEEecccCCCCCCcEEEhHHhhccEEEEEECCCCEEEEEEC
Confidence             468999999965 9999999999988733 3578985 5544321  2457899999999999999999999999973


No 19 
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=8.7e-33  Score=254.83  Aligned_cols=264  Identities=11%  Similarity=0.084  Sum_probs=197.3

Q ss_pred             CCCccccCcCCCCCC------CCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-
Q 036447            1 RCGSAQCNLANAKAC------GGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-   73 (338)
Q Consensus         1 ~C~s~~C~~~~~~~C------~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-   73 (338)
                      +|.+..|...+.+.|      ....|.|++.|+  .++++|.+++|.|+|++.         ++....|++...+.... 
T Consensus        46 ~C~~~~~~~~~~y~~~~Sst~~~~~~~~~~~y~--~gs~~G~~~~d~v~~~~~---------~~~~~~~~~~~~~~~~~~  114 (323)
T d3cmsa_          46 YCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYG--TGSMQGILGYDTVTVSNI---------VDIQQTVGLSTQEPGDFF  114 (323)
T ss_dssp             TCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEET--TEEEEEEEEEEEEEETTE---------EEEEEEEEEEEECCSHHH
T ss_pred             CCCCcccCCCCCCCccccCccccCCCcEEEEcC--CceEEEEEEEEEEEEecc---------ccccceEEEEEeeccccc
Confidence            366666665554443      355789999997  556889999999999875         55555666655542111 


Q ss_pred             CCCCcceEEecCCCC------CchHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeecccc
Q 036447           74 LANGVVGIAGLGRSK------VALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFI  146 (338)
Q Consensus        74 ~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~  146 (338)
                      ......+++|+++..      ..++.++..++.+ ++.||+||.+.  ...|.+.+|+++.     .++.+.+.|+|+..
T Consensus       115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~--~~~~~~~~g~~d~-----~~~~~~~~~~~~~~  187 (323)
T d3cmsa_         115 TYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN--GQESMLTLGAIDP-----SYYTGSLHWVPVTV  187 (323)
T ss_dssp             HHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTT--SSCEEEEESCCCG-----GGEEEEEEEEECSS
T ss_pred             ccccccccccccccccccCCCcchhhhHhhcCCCcccceeEEeccC--CCCCceeccccCc-----ccccCceEEeeccc
Confidence            124567888888743      3467778777777 78999999875  5689999999985     35578899999764


Q ss_pred             CCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcc
Q 036447          147 NPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTR  226 (338)
Q Consensus       147 ~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~  226 (338)
                                   ..+|.+.+.++.+++.......         ...++|||||++++||+++|++|++++.+....   
T Consensus       188 -------------~~~~~~~~~~~~~~~~~~~~~~---------~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~---  242 (323)
T d3cmsa_         188 -------------QQYWQFTVDSVTISGVVVACEG---------GCQAILDTGTSKLVGPSSDILNIQQAIGATQNQ---  242 (323)
T ss_dssp             -------------BTTBEEEEEEEEETTEEEESTT---------CEEEEECTTCCSEEECHHHHHHHHHHHTCEEET---
T ss_pred             -------------cceeEEEEeeEeeCCeeeecCC---------CeeEEEecCcceEEecHHHHHHHHHHhCceecc---
Confidence                         4689999999999998766432         357999999999999999999999988654321   


Q ss_pred             cCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcCCCeEEEEEEeCCCCCCCceEEcccceece
Q 036447          227 VAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNNNDVSCLGFVDGGVRPMTSIVIGGHQLENN  306 (338)
Q Consensus       227 ~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~fl~~~  306 (338)
                             ..|+...+...    ..+|+|+|+|+| +.++|+|++|+.+.  ++..|+++...+.  .+.+|||+.|||++
T Consensus       243 -------~~~~~~~~~~~----~~~p~i~f~f~g-~~~~l~~~~y~~~~--~~~c~~~i~~~~~--~~~~iLG~~~l~~~  306 (323)
T d3cmsa_         243 -------YGEFDIDCDNL----SYMPTVVFEING-KMYPLTPSAYTSQD--QGFCTSGFQSENH--SQKWILGDVFIREY  306 (323)
T ss_dssp             -------TTEEEECTTCT----TTSCCEEEEETT-EEEEECHHHHEEEE--TTEEEESEEEC-----CCEEECHHHHTTE
T ss_pred             -------CCceeEecccc----CCCCeEEEEECC-EEEEECHHHeEEcC--CCEEEEEEEeCCC--CCCEEEcHHhhCcE
Confidence                   12333332211    468999999975 99999999998764  4555568877654  35799999999999


Q ss_pred             EEEEeCCCCeEEEEecc
Q 036447          307 LLQFDLPSSRLGFSNSL  323 (338)
Q Consensus       307 ~vvfD~~~~rIGfa~~~  323 (338)
                      |++||+|++|||||+++
T Consensus       307 yvvfD~~~~~igfa~a~  323 (323)
T d3cmsa_         307 YSVFDRANNLVGLAKAI  323 (323)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCEEEEEEeC
Confidence            99999999999999864


No 20 
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}
Probab=100.00  E-value=8.7e-33  Score=255.68  Aligned_cols=265  Identities=14%  Similarity=0.166  Sum_probs=194.4

Q ss_pred             CCCccccCcCCCCC------CCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-
Q 036447            1 RCGSAQCNLANAKA------CGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-   73 (338)
Q Consensus         1 ~C~s~~C~~~~~~~------C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-   73 (338)
                      +|.+..|...+.+.      |....|.|.+.|+ +| .+.|.++.|++++++.         ++.++.++++....... 
T Consensus        46 ~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~~Y~-~g-~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~  114 (329)
T d2bjua1          46 KCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYV-SG-TVSGFFSKDLVTVGNL---------SLPYKFIEVIDTNGFEPT  114 (329)
T ss_dssp             TCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECS-SS-EEEEEEEEEEEEETTE---------EEEEEEEEEEECGGGTTH
T ss_pred             CCCCccccCCCCCCcccCCCccCCCccEEEEcC-CC-cEEEEEEEeeeeeeee---------eeccceEEEEEeeccCcc
Confidence            36666665544333      4466899999997 55 6999999999999986         66666666655442111 


Q ss_pred             -CCCCcceEEecCCCCC------chHHHHhhhcCC-CceeEEecCCCCCCCceeEEECCCCCcCCCCcCCCCCeeeeccc
Q 036447           74 -LANGVVGIAGLGRSKV------ALPLQLAAAFSF-DRKFAICLSPAFPRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLF  145 (338)
Q Consensus        74 -~~~~~~GIlGLg~~~~------s~~~ql~~~~~i-~~~FS~cl~~~~~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~  145 (338)
                       .....+|++||++...      .+..++..+..+ ++.|++||.... ...|.|+||+++.     .++.+++.|+|+.
T Consensus       115 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~-~~~g~l~~gg~d~-----~~~~g~~~~~~~~  188 (329)
T d2bjua1         115 YTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD-KHTGFLTIGGIEE-----RFYEGPLTYEKLN  188 (329)
T ss_dssp             HHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTT-TBCEEEEESSCCG-----GGEEEEEEEEEEE
T ss_pred             ccccccCccccccccccccCCccccchhhhhhhccccceeeEEecCCc-CCcceeeecCCCc-----ccccCceEEEeee
Confidence             1356899999987432      355566666666 789999998754 5679999999984     3567899999986


Q ss_pred             cCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCc
Q 036447          146 INPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVT  225 (338)
Q Consensus       146 ~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~  225 (338)
                      .             ..+|.|.++.+.++...-             ...++|||||++++||+++|++|++++.+...   
T Consensus       189 ~-------------~~~~~v~~~~~~~~~~~~-------------~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~~---  239 (329)
T d2bjua1         189 H-------------DLYWQITLDAHVGNIMLE-------------KANCIVDSGTSAITVPTDFLNKMLQNLDVIKV---  239 (329)
T ss_dssp             E-------------ETTEEEEEEEEETTEEEE-------------EEEEEECTTCCSEEECHHHHHHHTTTSSCEEC---
T ss_pred             e-------------eeeEEEEEeeeEeeeEcc-------------CCcccccccccceeCCHHHHHHHHHHhCCeec---
Confidence            4             368999998776543321             24699999999999999999999877644322   


Q ss_pred             ccCCCCCCcccccccccccCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEE-EEEEeCCCCCCCceEEcccce
Q 036447          226 RVAPVAPLGACFKSSDIVSSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSC-LGFVDGGVRPMTSIVIGGHQL  303 (338)
Q Consensus       226 ~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~C-l~~~~~~~~~~~~~ILG~~fl  303 (338)
                        ........|.+.         ..+|.++|+|++ .+++|+|++|+.+... +...| +++...+.. .+.+|||+.||
T Consensus       240 --~~~~~~~~~~~~---------~~~p~~~f~~~g-~~~~i~p~~y~~~~~~~~~~~C~~~i~~~~~~-~~~~IlG~~fl  306 (329)
T d2bjua1         240 --PFLPFYVTLCNN---------SKLPTFEFTSEN-GKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFP-VPTFILGDPFM  306 (329)
T ss_dssp             --TTSSCEEEETTC---------TTCCCEEEECSS-CEEEECHHHHEEECTTTSTTEEEECEEECCCS-SCEEEECHHHH
T ss_pred             --CCCCeeEeeccc---------CCCCceeEEeCC-EEEEECHHHhEEEeecCCCCEEEEEEEECCCC-CCCEEEchHhh
Confidence              111112233322         468999999987 8999999999988732 23566 577765432 46899999999


Q ss_pred             eceEEEEeCCCCeEEEEeccC
Q 036447          304 ENNLLQFDLPSSRLGFSNSLL  324 (338)
Q Consensus       304 ~~~~vvfD~~~~rIGfa~~~~  324 (338)
                      |++|+|||++++|||||++..
T Consensus       307 ~~~y~vfD~~~~~iGfA~a~~  327 (329)
T d2bjua1         307 RKYFTVFDYDNHSVGIALAKK  327 (329)
T ss_dssp             HHEEEEEETTTTEEEEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEecc
Confidence            999999999999999997543


No 21 
>g1b5f.1 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin {Cynara cardunculus [TaxId: 4265]}
Probab=100.00  E-value=2.1e-32  Score=252.71  Aligned_cols=250  Identities=15%  Similarity=0.185  Sum_probs=194.6

Q ss_pred             CCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccc-cCCCCCcceEEecCCCCCc--hHH
Q 036447           17 GGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVL-QGLANGVVGIAGLGRSKVA--LPL   93 (338)
Q Consensus        17 ~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~-~~~~~~~~GIlGLg~~~~s--~~~   93 (338)
                      ...|.|...|+ + +.+.|.+++|+++|++.         ++.++.++++..... .......+||+|||+...+  +..
T Consensus        68 ~~~~~~~~~y~-~-g~~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~gi~Gl~~~~~~~~~~~  136 (326)
T g1b5f.1          68 ENGTFGAIIYG-T-GSITGFFSQDSVTIGDL---------VVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWY  136 (326)
T ss_dssp             EEEEEEEEECS-S-CEEEEEEEEEEEEETTE---------EEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHH
T ss_pred             cCCcceEEEec-C-cceEEEEEeeccEeecc---------eeccceeEEEEeeeccccccccccccccccccccccChhH
Confidence            56788999996 4 46689999999999875         566667776654421 1124578999999988765  456


Q ss_pred             HHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEE
Q 036447           94 QLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIR  171 (338)
Q Consensus        94 ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~  171 (338)
                      +|..++.| ++.|++|+.... ....|.|+||++|.     .++.+.++|+|+..             ...|.+.+.++.
T Consensus       137 ~l~~~~~i~~~~~s~~~~~~~~~~~~~~l~~G~~d~-----~~~~~~l~~~~~~~-------------~~~~~~~~~~i~  198 (326)
T g1b5f.1         137 NMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDP-----NHFRGDHTYVPVTY-------------QYYWQFGIGDVL  198 (326)
T ss_dssp             HHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCG-----GGEEEEEEEEEEEE-------------ETTEEEEECCEE
T ss_pred             hhhhccccCCceeeEEEecCCCCCCCeEEEcCCCCc-----hhccceeEEEeecC-------------CCceEEEeccEE
Confidence            77777777 789999988653 35678999999995     36778999999865             368999999999


Q ss_pred             EcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccCCCCCCc
Q 036447          172 VSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIVSSRFGPSV  251 (338)
Q Consensus       172 v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  251 (338)
                      +++..+.+...        ...+++||||++++||.++|+++.+++.+...         ....|+..         +.+
T Consensus       199 ~~~~~~~~~~~--------~~~~~~dsgt~~~~lp~~~~~~~~~~~~~~~~---------~~~~C~~~---------~~~  252 (326)
T g1b5f.1         199 IGDKSTGFCAP--------GCQAFADSGTSLLSGPTAIVTQINHAIGANEE---------LQVDCNTL---------SSM  252 (326)
T ss_dssp             ETTEECCTTTT--------CEEEEECTTCSSEEECHHHHHHHHHHTTCCCC---------CEECGGGG---------GGC
T ss_pred             eccceeeecCC--------CceEEeeCCCceEEcChHHHHHHHHhhCCcee---------EEccccCC---------CCC
Confidence            99988765432        35799999999999999999999888654321         12467754         358


Q ss_pred             CcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCCC-CCCceEEcccceeceEEEEeCCCCeEEEEec
Q 036447          252 PPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGVR-PMTSIVIGGHQLENNLLQFDLPSSRLGFSNS  322 (338)
Q Consensus       252 P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~~-~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~  322 (338)
                      |+|+|+|+| ++++|+|++|+++... ....|+ ++...+.. ..+.+|||+.|||++|+|||+|++|||||++
T Consensus       253 p~itf~f~g-~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~~igfA~a  325 (326)
T g1b5f.1         253 PNVSFTIGG-KKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEA  325 (326)
T ss_dssp             CCEEEEETT-EEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEECC-EEEEECHHHeEEEecCCCCCEEEEEEEeCCCCCCCCcEEECHHHhCCEEEEEECCCCEEEEEEC
Confidence            999999975 9999999999988732 347898 56654432 2457899999999999999999999999973


No 22 
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=99.97  E-value=3.6e-31  Score=244.93  Aligned_cols=257  Identities=16%  Similarity=0.188  Sum_probs=193.8

Q ss_pred             CCCCCCCcceeeecCCCCceeEEEEEEEEEEeeccCCCCCCceeeeCcEEEeecccccccC-CCCCcceEEecCCCCCc-
Q 036447           13 KACGGGICGAGVNNPISNTGTSGDIRIDVLSIQSTNGGNPGRAVTVPNFIFLCGSEFVLQG-LANGVVGIAGLGRSKVA-   90 (338)
Q Consensus        13 ~~C~~~~C~~~i~Y~~dg~~~~G~~~~D~v~l~~~~g~~~~~~~~i~~~~fgc~~~~~~~~-~~~~~~GIlGLg~~~~s-   90 (338)
                      .+|....|.|.+.|+ +| ++.|.+++|++++++.         .+.++.|++........ .....+|++||+++..+ 
T Consensus        66 sT~~~~~~~~~~~y~-~g-s~~G~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~  134 (337)
T d1qdma2          66 STYKKNGKPAAIQYG-TG-SIAGYFSEDSVTVGDL---------VVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISV  134 (337)
T ss_dssp             TTCBCCCCEEEEEET-TE-EEEEEEEEEEEEETTE---------EEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCG
T ss_pred             CccccCCceEEEecC-Cc-eEEEEEEeeeEEEEee---------ccccceeeeeccccceeecccccccccccccCcccc
Confidence            345577899999997 55 7899999999999885         66677887776652111 13467899999986543 


Q ss_pred             -----hHHHHhhhcCC-CceeEEecCCCC-CCCceeEEECCCCCcCCCCcCCCCCeeeeccccCCCCCCCCCCCCCCcce
Q 036447           91 -----LPLQLAAAFSF-DRKFAICLSPAF-PRTNGVIIFGDGPYVLSPNVDVSKSLTYTPLFINPVNTESGFLGDPSVEY  163 (338)
Q Consensus        91 -----~~~ql~~~~~i-~~~FS~cl~~~~-~~~~G~l~fGg~d~~~~p~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~y  163 (338)
                           +..++..+..+ ++.|++|+.... ....|.|.||++|.     .++.+.+.|+|+..             ..+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~l~~g~~d~-----~~~~~~~~~~~~~~-------------~~~~  196 (337)
T d1qdma2         135 GKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDP-----KHYVGEHTYVPVTQ-------------KGYW  196 (337)
T ss_dssp             GGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCT-----TSEEEEEEEEEEEE-------------ETTE
T ss_pred             CCCccchhhhhhhhccCCCeEEEEeecCCCcccCcceecCCcCc-----cccccceeeeeecc-------------ccce
Confidence                 33445555555 689999998753 35689999999984     36788899999875             3679


Q ss_pred             EEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccc
Q 036447          164 FIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYNALVQAFVNAMPNVTRVAPVAPLGACFKSSDIV  243 (338)
Q Consensus       164 ~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~  243 (338)
                      .+.+.++.|++..+.+...        ...++|||||++++||.++|++|.+++.+.....     ......|...    
T Consensus       197 ~~~~~~~~v~~~~~~~~~~--------~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~----  259 (337)
T d1qdma2         197 QFDMGDVLVGGKSTGFCAG--------GCAAIADSGTSLLAGPTAIITEINEKIGAAGSPM-----GESAVDCGSL----  259 (337)
T ss_dssp             EEEECCEEETTEECSTTTT--------CEEEEECSSCCSEEECHHHHHHHHHHHTCCCCSS-----SCCEECGGGG----
T ss_pred             eeccceEEECCeEeeecCC--------CceEEeeccCcceecchHHHHHHHHHhccccccC-----Cccccccccc----
Confidence            9999999999988765422        3579999999999999999999999987654321     1122355543    


Q ss_pred             cCCCCCCcCcEEEEEcCCeEEEEecCCeEEEEcC-CCeEEE-EEEeCCCC--CCCceEEcccceeceEEEEeCCCCeEEE
Q 036447          244 SSRFGPSVPPIDLVLQNNVSWSIIGANSIVRVNN-NDVSCL-GFVDGGVR--PMTSIVIGGHQLENNLLQFDLPSSRLGF  319 (338)
Q Consensus       244 ~~~~~~~~P~i~f~f~gg~~~~i~~~~yl~~~~~-~~~~Cl-~~~~~~~~--~~~~~ILG~~fl~~~~vvfD~~~~rIGf  319 (338)
                           ..+|+|+|+|+| ++++|+|++|++.... .+..|+ ++...+..  ..+.+|||+.|||++|+|||++++||||
T Consensus       260 -----~~~p~itf~f~g-~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~igf  333 (337)
T d1qdma2         260 -----GSMPDIEFTIGG-KKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGF  333 (337)
T ss_dssp             -----TTCCCEEEEETT-EEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEE
T ss_pred             -----CCCCceEEEECC-EEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEEhHHhhcCEEEEEECCCCEEEE
Confidence                 468999999965 9999999999988632 246787 46554321  2467999999999999999999999999


Q ss_pred             Ee
Q 036447          320 SN  321 (338)
Q Consensus       320 a~  321 (338)
                      |+
T Consensus       334 A~  335 (337)
T d1qdma2         334 AK  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            97


No 23 
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}
Probab=75.08  E-value=1.4  Score=37.14  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=31.1

Q ss_pred             CCCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchH
Q 036447          136 SKSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETS  208 (338)
Q Consensus       136 ~~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~  208 (338)
                      +|.++.+|+..+             ..|.++   |.||.+.+               .++||||++++.+|..
T Consensus         3 ~~~~~~~~~~~d-------------~~Y~~~---i~vG~~~~---------------~v~~DTGSs~~Wv~~~   44 (323)
T d1bxoa_           3 SGVATNTPTAND-------------EEYITP---VTIGGTTL---------------NLNFDTGSADLWVFST   44 (323)
T ss_dssp             CEEEEEEECGGG-------------SCEEEE---EEETTEEE---------------EEEEETTCCCEEECBT
T ss_pred             CcccccccccCC-------------cEEEEE---EEECCccE---------------EEEEECCCcceEEECC
Confidence            467788888642             567544   78887543               3899999999999874


No 24 
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}
Probab=60.86  E-value=3.9  Score=34.24  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             CCeeeeccccCCCCCCCCCCCCCCcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHH
Q 036447          137 KSLTYTPLFINPVNTESGFLGDPSVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSI  209 (338)
Q Consensus       137 ~~~~~~pl~~~~~~~~~~~~~~~~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~  209 (338)
                      |.++..|+..             +..|.   ..|.||.+.+               .+++|||++.+.+|..-
T Consensus         4 ~~~~~~~~~~-------------d~~Y~---~~i~iG~q~~---------------~l~~DTGSs~~Wv~~~~   45 (323)
T d1izea_           4 GSVTTNPTSN-------------DEEYI---TQVTVGDDTL---------------GLDFDTGSADLWVFSSQ   45 (323)
T ss_dssp             EEEEEEECGG-------------GCCEE---EEEEETTEEE---------------EEEEETTCCCCEECBTT
T ss_pred             CcccccccCC-------------ccEEE---EEEEECCeeE---------------EEEEECCCcceEEEcCC
Confidence            5566677653             24565   4688997543               38999999999999744


No 25 
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.91  E-value=7.5  Score=32.05  Aligned_cols=16  Identities=6%  Similarity=-0.159  Sum_probs=14.1

Q ss_pred             cEEEeCCccceecchH
Q 036447          193 GTKISTVNPYTVLETS  208 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~  208 (338)
                      .+++|||++++.++.+
T Consensus        30 ~~~~DTGSs~~Wv~~~   45 (323)
T d3cmsa_          30 TVLFDTGSSDFWVPSI   45 (323)
T ss_dssp             EEEEETTCCCEEEEBT
T ss_pred             EEEEECCCCceEEecC
Confidence            4999999999999864


No 26 
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.46  E-value=16  Score=30.33  Aligned_cols=16  Identities=6%  Similarity=-0.045  Sum_probs=13.8

Q ss_pred             cEEEeCCccceecchH
Q 036447          193 GTKISTVNPYTVLETS  208 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~  208 (338)
                      .++||||++++.+|..
T Consensus        31 ~l~~DTGSs~~Wv~~~   46 (335)
T d1smra_          31 KVIFDTGSANLWVPST   46 (335)
T ss_dssp             EEEEETTCCCEEEEBT
T ss_pred             EEEEECCcccEEEEcC
Confidence            4999999999999853


No 27 
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}
Probab=36.11  E-value=14  Score=31.13  Aligned_cols=16  Identities=13%  Similarity=-0.147  Sum_probs=14.0

Q ss_pred             cEEEeCCccceecchH
Q 036447          193 GTKISTVNPYTVLETS  208 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~  208 (338)
                      .++||||++++.+|..
T Consensus        30 ~~ivDTGSs~~wv~~~   45 (357)
T d1mppa_          30 YLLFDTGSSDTWVPHK   45 (357)
T ss_dssp             EEEEETTCCCCEEEBT
T ss_pred             EEEEeCCCcceEEccC
Confidence            4999999999999864


No 28 
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}
Probab=34.62  E-value=25  Score=24.30  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             EEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchHHHH
Q 036447          166 GVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETSIYN  211 (338)
Q Consensus       166 ~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~  211 (338)
                      .+..+.|+|+.+.               +++|||...|.+......
T Consensus         9 P~~~i~I~Gq~v~---------------~LLDTGAD~TVI~~~~~p   39 (104)
T d2fmba_           9 PTTIVLINDTPLN---------------VLLDTGADTSVLTTAHYN   39 (104)
T ss_dssp             CEEEEEETTEEEE---------------EEECTTCSSCEEEHHHHH
T ss_pred             eEEEEEECCEEEE---------------EEEeCCCCeEEEcccccC
Confidence            4566888998764               999999999999877644


No 29 
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}
Probab=33.59  E-value=20  Score=29.48  Aligned_cols=16  Identities=6%  Similarity=-0.018  Sum_probs=14.2

Q ss_pred             cEEEeCCccceecchH
Q 036447          193 GTKISTVNPYTVLETS  208 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~  208 (338)
                      .++||||++++.+|.+
T Consensus        29 ~~~iDTGSs~~Wv~~~   44 (329)
T d1dpja_          29 KVILDTGSSNLWVPSN   44 (329)
T ss_dssp             EEEEETTCCCEEEEBT
T ss_pred             EEEEECCcccEEEECC
Confidence            4999999999999864


No 30 
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}
Probab=32.68  E-value=21  Score=29.58  Aligned_cols=17  Identities=12%  Similarity=-0.119  Sum_probs=14.4

Q ss_pred             cEEEeCCccceecchHH
Q 036447          193 GTKISTVNPYTVLETSI  209 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~~  209 (338)
                      .++||||++.+.+|..-
T Consensus        31 ~v~~DTGSs~~Wv~~~~   47 (330)
T d1oewa_          31 NLDFDTGSSDLWVFSSE   47 (330)
T ss_dssp             EEEEETTCCCEEECBTT
T ss_pred             EEEEECCccceEEECCC
Confidence            49999999999998644


No 31 
>g1b5f.1 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin {Cynara cardunculus [TaxId: 4265]}
Probab=29.26  E-value=12  Score=30.76  Aligned_cols=33  Identities=15%  Similarity=0.077  Sum_probs=22.8

Q ss_pred             CcceEEEEEEEEEcCeEeecCCcccccccCCCCcEEEeCCccceecchH
Q 036447          160 SVEYFIGVKSIRVSDKAIPLNTTLLSIDSEGFGGTKISTVNPYTVLETS  208 (338)
Q Consensus       160 ~~~y~i~l~~i~v~~~~i~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~  208 (338)
                      +..|.++   |.||.     |++.        -.++||||++++.+|..
T Consensus        12 d~~Y~~~---i~IGt-----P~Q~--------~~l~~DTGS~~~Wv~~~   44 (326)
T g1b5f.1          12 DTSYFGE---IGIGT-----PPQK--------FTVIFDTGSSVLWVPSS   44 (326)
T ss_dssp             TTEEEEE---EEETT-----TTEE--------EEEEEETTCCCEEEEBT
T ss_pred             CCEEEEE---EEECC-----CCeE--------EEEEEECCCcceEEecC
Confidence            4677666   67764     2221        24999999999998753


No 32 
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.00  E-value=45  Score=27.93  Aligned_cols=17  Identities=6%  Similarity=-0.103  Sum_probs=14.6

Q ss_pred             cEEEeCCccceecchHH
Q 036447          193 GTKISTVNPYTVLETSI  209 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~~  209 (338)
                      .+++|||++.+.+|.+-
T Consensus        72 ~vi~DTGSs~~Wv~~~~   88 (370)
T d3psga_          72 TVIFDTGSSNLWVPSVY   88 (370)
T ss_dssp             EEEEETTCCCEEEEBTT
T ss_pred             EEEEeCCCCCeEEECcc
Confidence            49999999999998643


No 33 
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=22.78  E-value=38  Score=27.98  Aligned_cols=16  Identities=13%  Similarity=-0.062  Sum_probs=13.8

Q ss_pred             cEEEeCCccceecchH
Q 036447          193 GTKISTVNPYTVLETS  208 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~~  208 (338)
                      .++||||++++.+|..
T Consensus        28 ~~i~DTGS~~~Wv~~~   43 (334)
T d1j71a_          28 TVVIDTGSSDLWVVDT   43 (334)
T ss_dssp             EEEEETTCCCEEEEEE
T ss_pred             EEEEECCCcceEEeeC
Confidence            4899999999998754


No 34 
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.00  E-value=37  Score=28.59  Aligned_cols=15  Identities=7%  Similarity=0.000  Sum_probs=13.4

Q ss_pred             cEEEeCCccceecch
Q 036447          193 GTKISTVNPYTVLET  207 (338)
Q Consensus       193 ~~iiDSGTt~t~lp~  207 (338)
                      .++||||++.+.+|.
T Consensus        30 ~li~DTGSs~lWv~~   44 (387)
T d2qp8a1          30 NILVDTGSSNFAVGA   44 (387)
T ss_dssp             EEEEETTCCCEEEEC
T ss_pred             EEEEECCccceEEcc
Confidence            499999999999985


Done!