BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036448
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 246 LPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGI-SKLTSL 304
LP EL NL LD+ +C+ + P L +++ +LN ++ LK +P GI +LTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTSL 520
Query: 305 RTL 307
+ +
Sbjct: 521 QKI 523
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 203 SFPMSIRGLDRLRTLLIYDRSDFNXXXXXXXXXXXXXKECIERLPKTLCELYNLQKLDIR 262
S P SI L L++L I + I LPK L++LD+R
Sbjct: 197 SLPASIANLQNLKSLKIRNSP------------LSALGPAIHHLPK-------LEELDLR 237
Query: 263 RCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308
C L+ P G ++ L+ + +L +P+ I +LT L LD
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 240 KECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGK---------LKNMRSLLNGETDS 290
+ + LP ++ L L++L IR C L ELP + L N++S L E
Sbjct: 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS-LRLEWTG 194
Query: 291 LKYMPVGISKLTSLRTL 307
++ +P I+ L +L++L
Sbjct: 195 IRSLPASIANLQNLKSL 211
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 246 LPKTLCELYNLQKLDIRRCRNLKELPAGIGKL 277
LP + L L+KLD+R C NL LP+ I +L
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 11 RENLEPIGRKIAHKCKGLPLAAKVIGNLLRS----------KSTGKEWQRILESEMWKVE 60
+E+L I +CKG PL +IG LLR + K+++RI +S + E
Sbjct: 310 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 369
Query: 61 EIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKNYNMNKEELISLW 108
+ + + + + D +K ++ ++ K+ + + L LW
Sbjct: 370 ALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 11 RENLEPIGRKIAHKCKGLPLAAKVIGNLLRS----------KSTGKEWQRILESEMWKVE 60
+E+L I +CKG PL +IG LLR + K+++RI +S + E
Sbjct: 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYE 362
Query: 61 EIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKNYNMNKEELISLW 108
+ + + + + D +K ++ ++ K+ + + L LW
Sbjct: 363 ALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 11 RENLEPIGRKIAHKCKGLPLAAKVIGNLLRS----------KSTGKEWQRILESEMWKVE 60
+ +L I +CKG PL +IG LLR + K+++RI +S + E
Sbjct: 303 KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 362
Query: 61 EIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKNYNMNKEELISLW 108
+ + + + + D +K ++ ++ K+ + + L LW
Sbjct: 363 ALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 11 RENLEPIGRKIAHKCKGLPLAAKVIGNLLRS----------KSTGKEWQRILESEMWKVE 60
+ +L I +CKG PL +IG LLR + K+++RI +S + E
Sbjct: 309 KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 368
Query: 61 EIGQGLLAPLLLSYNDLPSNSMVKQCFSYCAVFPKNYNMNKEELISLW 108
+ + + + + D +K ++ ++ K+ + + L LW
Sbjct: 369 ALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKVLCILW 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,806,716
Number of Sequences: 62578
Number of extensions: 462410
Number of successful extensions: 807
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 11
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)