Query 036448
Match_columns 580
No_of_seqs 468 out of 2745
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-54 3.3E-59 461.6 19.8 498 2-550 330-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-47 5.9E-52 428.6 26.4 483 1-556 363-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-22 2.7E-27 229.5 13.9 255 188-453 92-367 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.6E-22 3.5E-27 228.6 14.1 337 188-551 68-439 (968)
5 KOG0444 Cytoskeletal regulator 99.8 6.6E-23 1.4E-27 199.6 -4.7 311 189-554 55-376 (1255)
6 KOG4194 Membrane glycoprotein 99.8 3.4E-21 7.4E-26 186.4 4.1 311 189-551 102-427 (873)
7 PLN03210 Resistant to P. syrin 99.8 1.3E-19 2.9E-24 205.0 16.3 318 187-554 587-944 (1153)
8 KOG0472 Leucine-rich repeat pr 99.8 8.3E-21 1.8E-25 175.9 -2.2 43 509-552 498-540 (565)
9 KOG0444 Cytoskeletal regulator 99.8 1.1E-20 2.3E-25 184.4 -3.6 306 188-548 77-394 (1255)
10 KOG4194 Membrane glycoprotein 99.7 2.9E-19 6.2E-24 173.2 1.5 309 188-549 124-448 (873)
11 PF00931 NB-ARC: NB-ARC domain 99.7 5.8E-18 1.2E-22 163.9 0.4 107 10-118 177-286 (287)
12 KOG0472 Leucine-rich repeat pr 99.6 8E-19 1.7E-23 162.8 -8.8 263 190-552 46-309 (565)
13 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.3E-22 171.0 -5.8 211 190-431 46-275 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 7E-14 1.5E-18 147.6 13.9 34 517-551 423-456 (788)
15 KOG0618 Serine/threonine phosp 99.5 3.5E-16 7.7E-21 160.1 -4.9 239 234-528 246-488 (1081)
16 KOG0617 Ras suppressor protein 99.4 2.9E-15 6.3E-20 123.2 -4.1 156 209-432 30-185 (264)
17 PRK15370 E3 ubiquitin-protein 99.4 9.5E-13 2E-17 140.0 11.3 91 189-308 178-268 (754)
18 KOG4658 Apoptotic ATPase [Sign 99.4 8.7E-13 1.9E-17 142.4 9.0 309 209-558 520-847 (889)
19 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.7E-17 135.3 11.2 131 359-551 302-433 (788)
20 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.1E-19 117.1 -5.9 163 188-419 32-195 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 5.9E-12 1.3E-16 134.0 8.5 234 243-553 190-428 (754)
22 KOG4237 Extracellular matrix p 99.2 4.3E-12 9.4E-17 118.4 3.8 244 185-431 63-357 (498)
23 cd00116 LRR_RI Leucine-rich re 99.1 1.2E-11 2.6E-16 121.9 -2.4 45 245-289 42-92 (319)
24 KOG4237 Extracellular matrix p 99.0 1.8E-11 3.9E-16 114.4 -3.5 132 228-370 66-199 (498)
25 cd00116 LRR_RI Leucine-rich re 99.0 1.4E-10 3E-15 114.3 0.8 250 245-553 14-291 (319)
26 KOG0532 Leucine-rich repeat (L 98.9 8.1E-11 1.8E-15 115.1 -3.5 190 190-452 76-270 (722)
27 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 5.1E-13 101.4 5.4 179 189-438 116-295 (394)
28 PF14580 LRR_9: Leucine-rich r 98.6 4.4E-08 9.5E-13 84.9 5.0 79 188-288 18-98 (175)
29 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.3E-13 97.5 0.4 157 249-452 116-281 (505)
30 KOG4341 F-box protein containi 98.5 1.1E-08 2.4E-13 96.8 -2.3 287 251-579 161-459 (483)
31 KOG0532 Leucine-rich repeat (L 98.5 4.6E-09 9.9E-14 103.1 -5.3 151 234-462 80-230 (722)
32 COG4886 Leucine-rich repeat (L 98.5 8.8E-08 1.9E-12 97.2 3.4 189 194-453 98-288 (394)
33 KOG1259 Nischarin, modulator o 98.3 2.8E-07 6E-12 83.7 2.6 53 254-309 284-336 (490)
34 PF14580 LRR_9: Leucine-rich r 98.3 1.4E-07 3E-12 81.8 0.7 77 210-309 17-95 (175)
35 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 3E-13 91.9 -6.3 157 255-455 186-351 (419)
36 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.7E-11 62.0 4.1 58 212-289 1-60 (61)
37 PRK15386 type III secretion pr 98.2 3E-06 6.5E-11 82.7 8.1 69 208-300 48-116 (426)
38 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 92.0 6.8 92 191-300 420-512 (623)
39 KOG4341 F-box protein containi 98.1 1.6E-07 3.4E-12 89.2 -3.3 265 254-558 138-419 (483)
40 KOG1259 Nischarin, modulator o 98.1 5.2E-07 1.1E-11 81.9 -1.3 117 188-309 283-406 (490)
41 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 53.6 3.5 39 254-294 1-39 (44)
42 KOG3207 Beta-tubulin folding c 98.0 6E-07 1.3E-11 85.8 -1.9 108 188-312 120-232 (505)
43 PF13855 LRR_8: Leucine rich r 97.9 9.5E-06 2.1E-10 57.4 3.6 58 189-265 1-60 (61)
44 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.8E-10 51.3 3.8 41 212-272 1-41 (44)
45 PLN03150 hypothetical protein; 97.8 2.3E-05 4.9E-10 83.7 6.2 76 234-310 423-498 (623)
46 PRK15386 type III secretion pr 97.8 5.2E-05 1.1E-09 74.3 7.9 57 397-458 52-110 (426)
47 KOG0531 Protein phosphatase 1, 97.8 3.6E-06 7.9E-11 85.6 -1.4 33 399-431 234-266 (414)
48 KOG1909 Ran GTPase-activating 97.8 1.8E-05 4E-10 73.8 3.1 238 188-453 29-309 (382)
49 KOG2120 SCF ubiquitin ligase, 97.7 1.8E-06 3.9E-11 78.5 -4.5 159 355-551 206-374 (419)
50 KOG1909 Ran GTPase-activating 97.6 1.5E-05 3.2E-10 74.4 -0.5 200 206-432 86-310 (382)
51 KOG3665 ZYG-1-like serine/thre 97.5 6.3E-05 1.4E-09 80.2 3.1 113 252-370 146-261 (699)
52 KOG1859 Leucine-rich repeat pr 97.3 1.4E-05 3.1E-10 81.4 -4.1 58 234-296 169-226 (1096)
53 KOG0531 Protein phosphatase 1, 97.2 8.6E-05 1.9E-09 75.6 0.4 99 188-309 94-193 (414)
54 KOG4579 Leucine-rich repeat (L 97.1 0.00012 2.6E-09 59.1 0.2 89 188-297 52-141 (177)
55 KOG4579 Leucine-rich repeat (L 96.8 0.00013 2.7E-09 58.9 -2.2 98 190-308 28-129 (177)
56 KOG1859 Leucine-rich repeat pr 96.7 3.8E-05 8.3E-10 78.5 -6.8 97 187-288 162-264 (1096)
57 KOG1947 Leucine rich repeat pr 96.7 0.00034 7.3E-09 73.3 -0.3 113 252-370 186-306 (482)
58 KOG3665 ZYG-1-like serine/thre 96.7 0.0012 2.5E-08 70.7 3.5 140 252-409 120-262 (699)
59 KOG2982 Uncharacterized conser 96.6 0.00072 1.6E-08 62.0 0.9 47 391-437 218-266 (418)
60 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.3E-08 34.5 1.1 21 255-276 1-21 (22)
61 KOG1644 U2-associated snRNP A' 96.2 0.0046 1E-07 53.7 3.5 70 234-308 47-119 (233)
62 KOG1644 U2-associated snRNP A' 96.1 0.0077 1.7E-07 52.4 4.1 93 387-496 54-150 (233)
63 COG5238 RNA1 Ran GTPase-activa 96.0 0.0058 1.2E-07 55.6 3.3 238 246-532 50-318 (388)
64 COG5238 RNA1 Ran GTPase-activa 96.0 0.0059 1.3E-07 55.5 3.3 87 188-289 29-131 (388)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0039 8.5E-08 56.5 2.1 104 188-313 42-154 (260)
66 KOG2982 Uncharacterized conser 95.9 0.0017 3.7E-08 59.7 -0.7 60 514-577 222-284 (418)
67 KOG3864 Uncharacterized conser 95.8 0.0012 2.6E-08 57.3 -2.0 69 482-554 121-190 (221)
68 KOG1947 Leucine rich repeat pr 95.5 0.0021 4.6E-08 67.2 -1.8 36 276-311 186-223 (482)
69 KOG2123 Uncharacterized conser 95.3 0.0021 4.5E-08 58.5 -2.2 84 250-336 37-122 (388)
70 KOG2739 Leucine-rich acidic nu 95.0 0.0084 1.8E-07 54.4 0.6 39 250-288 61-101 (260)
71 PF13504 LRR_7: Leucine rich r 94.8 0.018 3.8E-07 28.5 1.3 17 516-533 1-17 (17)
72 PF13504 LRR_7: Leucine rich r 94.7 0.021 4.5E-07 28.3 1.3 16 255-271 2-17 (17)
73 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.2E-07 31.1 0.8 22 279-301 1-22 (22)
74 KOG2123 Uncharacterized conser 94.3 0.004 8.7E-08 56.8 -3.0 99 188-308 18-123 (388)
75 KOG3864 Uncharacterized conser 91.4 0.013 2.8E-07 51.0 -3.8 85 421-528 102-188 (221)
76 smart00370 LRR Leucine-rich re 91.4 0.18 3.9E-06 28.1 2.0 21 253-274 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 91.4 0.18 3.9E-06 28.1 2.0 21 253-274 1-21 (26)
78 KOG0473 Leucine-rich repeat pr 90.7 0.0065 1.4E-07 53.9 -6.4 53 234-289 70-122 (326)
79 KOG0473 Leucine-rich repeat pr 89.3 0.022 4.8E-07 50.7 -4.3 81 208-309 38-118 (326)
80 PRK04841 transcriptional regul 86.2 2.9 6.3E-05 47.7 9.0 125 16-167 206-332 (903)
81 smart00367 LRR_CC Leucine-rich 81.8 0.67 1.5E-05 25.8 0.7 17 540-556 2-18 (26)
82 PF13306 LRR_5: Leucine rich r 79.3 7 0.00015 31.9 6.5 13 417-429 32-44 (129)
83 smart00364 LRR_BAC Leucine-ric 74.5 1.9 4.2E-05 23.9 1.1 19 516-535 2-20 (26)
84 PF13306 LRR_5: Leucine rich r 70.0 11 0.00023 30.8 5.3 36 250-287 54-90 (129)
85 PF13516 LRR_6: Leucine Rich r 66.6 2.3 4.9E-05 23.0 0.3 12 254-265 2-13 (24)
86 smart00365 LRR_SD22 Leucine-ri 60.0 7.2 0.00016 21.8 1.5 12 254-265 2-13 (26)
87 PF14050 Nudc_N: N-terminal co 37.8 68 0.0015 22.4 3.9 31 13-43 2-32 (62)
88 smart00368 LRR_RI Leucine rich 36.5 25 0.00054 19.8 1.4 12 254-265 2-13 (28)
89 KOG4308 LRR-containing protein 29.4 1.3 2.8E-05 45.7 -8.3 45 388-432 252-302 (478)
90 PF11569 Homez: Homeodomain le 27.2 63 0.0014 22.0 2.2 35 94-139 3-37 (56)
91 PRK00080 ruvB Holliday junctio 25.6 56 0.0012 32.0 2.7 105 16-142 203-310 (328)
92 TIGR00635 ruvB Holliday juncti 22.6 2.6E+02 0.0057 26.9 6.8 105 16-142 182-289 (305)
93 KOG4062 6-O-methylguanine-DNA 22.3 1.1E+02 0.0024 25.9 3.2 26 13-43 108-133 (178)
94 PF04089 BRICHOS: BRICHOS doma 21.3 50 0.0011 25.4 1.1 19 11-29 75-93 (97)
95 KOG3763 mRNA export factor TAP 20.9 64 0.0014 33.5 2.0 85 210-310 216-309 (585)
96 PF14162 YozD: YozD-like prote 20.2 1.3E+02 0.0027 19.9 2.5 21 122-142 10-30 (57)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-54 Score=461.57 Aligned_cols=498 Identities=27% Similarity=0.409 Sum_probs=351.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcc----cccccccchhHHHhhhcCC
Q 036448 2 AFLRRSFEDRENLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWK----VEEIGQGLLAPLLLSYNDL 77 (580)
Q Consensus 2 aF~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~l~~sy~~L 77 (580)
||.... ...+.++++|++||++|+|||||+++||++|+.|+++++|+++.+...+. ..++.+.+++++++|||.|
T Consensus 330 v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L 408 (889)
T KOG4658|consen 330 VGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNL 408 (889)
T ss_pred hccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhh
Confidence 455422 24456999999999999999999999999999999999999999865443 2233467899999999999
Q ss_pred CCcchhhhhhhhccccCCCcccCHHHHHHHHHHcCCccCC-CchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEec
Q 036448 78 PSNSMVKQCFSYCAVFPKNYNMNKEELISLWMAQGYLNTE-EDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMH 156 (580)
Q Consensus 78 ~~~~~~k~~fl~~~~f~~~~~i~~~~Li~~w~a~g~~~~~-~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mh 156 (580)
|. ++|.||+|||+|||||.|++++|+.+|+||||+.+. .++.+++.|+.|+.+|++++|++..... ++..+|+||
T Consensus 409 ~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmH 484 (889)
T KOG4658|consen 409 PE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMH 484 (889)
T ss_pred hH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEee
Confidence 96 999999999999999999999999999999999884 4678999999999999999999987654 667789999
Q ss_pred HHHHHHHHHhhh-----cceEEEEec-CccccccccCCCceEEEEEEecCCCcCcccccCCCcccEEEeccCC--ccccc
Q 036448 157 DIVHDFAQFVSR-----KECLWVEIN-GTKDSVINSFGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRS--DFNLS 228 (580)
Q Consensus 157 dl~~~~~~~i~~-----~e~~~~~~~-~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~l~l~ 228 (580)
|+||+||.+++. +++.++..+ +....+....+..+|++++.++.+..++.... +++|++|.+.+|+ ...++
T Consensus 485 DvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred HHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcC
Confidence 999999999999 677555543 33334445557899999999999987776654 4589999999986 44444
Q ss_pred cccee-------eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCC
Q 036448 229 LSSIL-------SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKL 301 (580)
Q Consensus 229 ~~~~~-------L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L 301 (580)
...+. |||++|.. +.++|++|++|.+||+|+++++. +.++|.++++|.+|.+|++..+..+..+|..+..|
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred HHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 32222 89997765 89999999999999999999988 88999999999999999999887777776666679
Q ss_pred CCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhh
Q 036448 302 TSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRR 381 (580)
Q Consensus 302 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 381 (580)
++|++|.++... .......++++.+|++|+.+.+..... .. ...+..+..|.++...-..
T Consensus 642 ~~Lr~L~l~~s~---~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-----~e~l~~~~~L~~~~~~l~~----------- 701 (889)
T KOG4658|consen 642 QSLRVLRLPRSA---LSNDKLLLKELENLEHLENLSITISSV-LL-----LEDLLGMTRLRSLLQSLSI----------- 701 (889)
T ss_pred ccccEEEeeccc---cccchhhHHhhhcccchhhheeecchh-Hh-----HhhhhhhHHHHHHhHhhhh-----------
Confidence 999999876554 112244567777777777766643221 00 0111222223222111100
Q ss_pred hhhhHHHHhhcCCCCCCCcEEEEeecCCCCCC-cchh-----c-ccCCcEEEEcCCCCCCCCCCCCCcc-ccceeccccc
Q 036448 382 KKEKDEQLLKALQLPLSVEKLGIILYGGNIFP-KWLT-----S-LTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 382 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~l~-----~-l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~ 453 (580)
...........+..+.+|+.|.+.+|.+.... .|.. . ++++..+.+.+|.....+.+....| |+.|.+..|.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 00122445566677788888888888775432 1211 2 5566677777777666666655666 8888888877
Q ss_pred CceEeCccccCCCCCCCCCCCCCCCCCccccCcccccc-cccccccccccccccccccccCCCCccceeeeccCCCCCCC
Q 036448 454 SVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSL-IIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL 532 (580)
Q Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 532 (580)
.++.+........... ..+..|+++..+ .+.+.+.++++.. .--.++.|+.+.+..|++++.+
T Consensus 782 ~~e~~i~~~k~~~~l~----------~~i~~f~~~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 782 LLEDIIPKLKALLELK----------ELILPFNKLEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKL 845 (889)
T ss_pred ccccCCCHHHHhhhcc----------cEEecccccccceeeecCCCCceeEe------cccCccchhheehhcCcccccC
Confidence 6665533221111100 012344455555 2444444433322 0114556888888888877776
Q ss_pred CcCCCCCCCcceEEEecC
Q 036448 533 PDYLLQTTTLQDLTIWKC 550 (580)
Q Consensus 533 p~~~~~l~~L~~L~i~~c 550 (580)
| .+.++.+.+|
T Consensus 846 P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 846 P-------LLSTLTIVGC 856 (889)
T ss_pred c-------cccccceecc
Confidence 5 4455566665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-47 Score=428.64 Aligned_cols=483 Identities=21% Similarity=0.276 Sum_probs=326.9
Q ss_pred CccCCCCCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcccccccccchhHHHhhhcCCCCc
Q 036448 1 MAFLRRSFEDRENLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVEEIGQGLLAPLLLSYNDLPSN 80 (580)
Q Consensus 1 ~aF~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 80 (580)
+||+... +++++++++++||++|+|+||||+++|+.|+++ +..+|+.++++.... .+.+|..+|++||++|+++
T Consensus 363 ~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 363 SAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCcc
Confidence 5898665 667899999999999999999999999999988 689999999864432 2346999999999999874
Q ss_pred chhhhhhhhccccCCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEecHHHH
Q 036448 81 SMVKQCFSYCAVFPKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMHDIVH 160 (580)
Q Consensus 81 ~~~k~~fl~~~~f~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~ 160 (580)
..|.||+||||||.++.+ +.+..|.|.+.+.... -++.|++++|++.... .++|||++|
T Consensus 437 -~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~~----------~l~~L~~ksLi~~~~~-------~~~MHdLl~ 495 (1153)
T PLN03210 437 -KDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVNI----------GLKNLVDKSLIHVRED-------IVEMHSLLQ 495 (1153)
T ss_pred -chhhhhheehhhcCCCCH---HHHHHHHHhcCCCchh----------ChHHHHhcCCEEEcCC-------eEEhhhHHH
Confidence 589999999999998765 3467788776554322 2899999999987532 489999999
Q ss_pred HHHHHhhhcce-------EEEEecCc-cccccccCCCceEEEEEEecCCCc---CcccccCCCcccEEEecc--------
Q 036448 161 DFAQFVSRKEC-------LWVEINGT-KDSVINSFGDKVRHLGLNFQRGTS---FPMSIRGLDRLRTLLIYD-------- 221 (580)
Q Consensus 161 ~~~~~i~~~e~-------~~~~~~~~-~~~~~~~~~~~~~~L~l~~~~~~~---~~~~~~~l~~Lr~L~l~~-------- 221 (580)
+||+++++++. +.....+. ..........+++.+++....+.. -+..+.+|++|++|.++.
T Consensus 496 ~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~ 575 (1153)
T PLN03210 496 EMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE 575 (1153)
T ss_pred HHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc
Confidence 99999998763 21111110 011112224455555555444332 123355555666555543
Q ss_pred -----------------------CCccccccc-----ceeeecccccccccccchhhccCCCccEEeccCCccccccchh
Q 036448 222 -----------------------RSDFNLSLS-----SILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAG 273 (580)
Q Consensus 222 -----------------------~~~l~l~~~-----~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 273 (580)
+..-.++.. -..|+++++. +..+|..+..+++|++|+|++|..+..+|.
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~--l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK--LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc--ccccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 221111111 0127888887 888888888888899999988877888885
Q ss_pred hhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhc
Q 036448 274 IGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERL 353 (580)
Q Consensus 274 i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~ 353 (580)
++.+++|++|++++|..+..+|..++++++|+.|++..+.... ..+.. .++++|+.+.+.++.....+..
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~---- 722 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--ILPTG----INLKSLYRLNLSGCSRLKSFPD---- 722 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC--ccCCc----CCCCCCCEEeCCCCCCcccccc----
Confidence 8888889999998888888888888888888888865443322 11111 1456666666666544332211
Q ss_pred ccccccccceeEEEeecccCCchhHHh------hhhh-hHHHHh--------hcCCCCCCCcEEEEeecCC-CCCCcchh
Q 036448 354 QLYNQQNLLRLRLEFGRVVDGEDEERR------RKKE-KDEQLL--------KALQLPLSVEKLGIILYGG-NIFPKWLT 417 (580)
Q Consensus 354 ~l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~-~~~~~~--------~~l~~~~~L~~L~l~~~~~-~~lp~~l~ 417 (580)
...+|+.|+++.+.+......... .... ....+. .....+++|+.|++++|.. ..+|.++.
T Consensus 723 ---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 723 ---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred ---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 124566666665553221100000 0000 000000 0112346899999988854 56899999
Q ss_pred cccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccc
Q 036448 418 SLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAM 496 (580)
Q Consensus 418 ~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 496 (580)
++++|+.|+|++|..++.+|....++ |+.|++++|..+..++. ..++|+.|++++.
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----------------------~~~nL~~L~Ls~n 856 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----------------------ISTNISDLNLSRT 856 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----------------------cccccCEeECCCC
Confidence 99999999999998888888766788 99999999887765432 2356777777663
Q ss_pred ccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcchHHH
Q 036448 497 EELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCALLENR 556 (580)
Q Consensus 497 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~ 556 (580)
.++.++. ++..+++|+.|++++|++++.+|..+..+++|+.+++++|+.++..
T Consensus 857 -~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 857 -GIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -CCccChH------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 3443332 5667888888888888888888887777888888888888877643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.3e-22 Score=229.50 Aligned_cols=255 Identities=17% Similarity=0.130 Sum_probs=143.2
Q ss_pred CCceEEEEEEecCCC-cCccccc-CCCcccEEEeccCCcccc-cccc---e-eeeccccccccc-ccchhhccCCCccEE
Q 036448 188 GDKVRHLGLNFQRGT-SFPMSIR-GLDRLRTLLIYDRSDFNL-SLSS---I-LSSFSSSKECIE-RLPKTLCELYNLQKL 259 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~-~~~~~~~-~l~~Lr~L~l~~~~~l~l-~~~~---~-~L~l~~~~~~i~-~lp~~i~~L~~L~~L 259 (580)
.+.++.|++++|.+. .+|..+. .+++||+|++++|+.... +... + .|+++++. +. .+|..++++++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM--LSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCc--ccccCChHHhcCCCCCEE
Confidence 457788888887775 3666544 778888888887754321 1111 1 27777776 54 667777777778888
Q ss_pred eccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEe
Q 036448 260 DIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIE 339 (580)
Q Consensus 260 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 339 (580)
++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+. .....+ ..+.++++|+.+.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p---~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN--LSGEIP---YEIGGLTSLNHLDLV 244 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc--cCCcCC---hhHhcCCCCCEEECc
Confidence 887777556677777777777777777775555677777777777777643322 111112 233444455555544
Q ss_pred CCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHh----------hhhhhHHHHhhcCCCCCCCcEEEEeecCC
Q 036448 340 GLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERR----------RKKEKDEQLLKALQLPLSVEKLGIILYGG 409 (580)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 409 (580)
...- ....+..+.++++|+.|+++.|.+......... .........+..+..+++|+.|++.+|..
T Consensus 245 ~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 245 YNNL----TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred Ccee----ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 3211 111122344455555555555542211000000 00001122333445556677777766655
Q ss_pred C-CCCcchhcccCCcEEEEcCCCCCCCCCC-CCCcc-ccceeccccc
Q 036448 410 N-IFPKWLTSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 410 ~-~lp~~l~~l~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~ 453 (580)
. .+|.++..+++|+.|++++|.....+|. ++.++ |+.|+++++.
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 3 4466666677777777776655444443 55566 7777776543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.6e-22 Score=228.62 Aligned_cols=337 Identities=15% Similarity=0.119 Sum_probs=218.2
Q ss_pred CCceEEEEEEecCCCc-CcccccCCCcccEEEeccCCcc-ccccc------ce-eeeccccccccc-ccchhhccCCCcc
Q 036448 188 GDKVRHLGLNFQRGTS-FPMSIRGLDRLRTLLIYDRSDF-NLSLS------SI-LSSFSSSKECIE-RLPKTLCELYNLQ 257 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~l-~l~~~------~~-~L~l~~~~~~i~-~lp~~i~~L~~L~ 257 (580)
..+++.|+++++.+.. ++..+..+++|++|++++|+.- .++.. .+ .|++++|. +. .+|. +.+++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~--l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN--FTGSIPR--GSIPNLE 143 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc--cccccCc--cccCCCC
Confidence 3579999999988765 6778899999999999999653 22221 12 29999998 54 4554 6799999
Q ss_pred EEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCcee
Q 036448 258 KLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECG 337 (580)
Q Consensus 258 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 337 (580)
+|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+. .... ....+.++++|+.+.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~---~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--LVGQ---IPRELGQMKSLKWIY 218 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC--CcCc---CChHHcCcCCccEEE
Confidence 99999998556899999999999999999997667899999999999999965432 2112 234556677777777
Q ss_pred EeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC-CCCcch
Q 036448 338 IEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGN-IFPKWL 416 (580)
Q Consensus 338 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l 416 (580)
+....- ....+..+.++++|+.|+++.|.+. ...+..+..+++|+.|++++|... .+|.++
T Consensus 219 L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~--------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 219 LGYNNL----SGEIPYEIGGLTSLNHLDLVYNNLT--------------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred CcCCcc----CCcCChhHhcCCCCCEEECcCceec--------------cccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 665322 1122334678899999999988732 234455666777777777777653 457777
Q ss_pred hcccCCcEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCC---CCCCCCC-CCCCccccCccccc
Q 036448 417 TSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESS---EDGPSSS-SSSPSVIAFPKLKS 490 (580)
Q Consensus 417 ~~l~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~L~~ 490 (580)
..+++|++|++++|.....+|. +..++ |+.|+++++.-....+..+.....+. ..++... ..+..+..+++|+.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 7777777777777755544443 45666 77777765432222222111111111 0111111 11223445566666
Q ss_pred ccccccccccccc------------------cccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 491 LIIGAMEELEEWN------------------YRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 491 L~l~~~~~L~~~~------------------~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
|+++++.-....+ .....+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 6665542111111 011223345567778888887777555677777777888888887764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=6.6e-23 Score=199.62 Aligned_cols=311 Identities=19% Similarity=0.190 Sum_probs=232.6
Q ss_pred CceEEEEEEecCCCcCcccccCCCcccEEEeccCCccc--cccccee------eecccccccccccchhhccCCCccEEe
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFN--LSLSSIL------SSFSSSKECIERLPKTLCELYNLQKLD 260 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~--l~~~~~~------L~l~~~~~~i~~lp~~i~~L~~L~~L~ 260 (580)
.++.+|++.+|++.++-..+..++.||++++.+|..-+ ++..-+. ||||+|+ +++.|..+..-+++-+|+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq--L~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ--LREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh--hhhcchhhhhhcCcEEEE
Confidence 56777888888777777777778888888777774221 1111111 8999999 999999999999999999
Q ss_pred ccCCccccccchhh-hcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEe
Q 036448 261 IRRCRNLKELPAGI-GKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIE 339 (580)
Q Consensus 261 L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 339 (580)
|++|+ +..+|..+ .+|+.|-+||+++| .+..+|+.+.+|..|++|.+....-. ...+..|+.|+.|..|.++
T Consensus 133 LS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 133 LSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-----HHHHhcCccchhhhhhhcc
Confidence 99988 88999754 57999999999999 78999999999999999985433222 3456677777777777766
Q ss_pred CCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcc
Q 036448 340 GLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSL 419 (580)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l 419 (580)
+-.. ...-.+.++.++.+|..++++.|+ ...+++.+..+.+|+.|++++|.++.+.-.....
T Consensus 206 ~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~---------------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W 267 (1255)
T KOG0444|consen 206 NTQR---TLDNIPTSLDDLHNLRDVDLSENN---------------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEW 267 (1255)
T ss_pred cccc---hhhcCCCchhhhhhhhhccccccC---------------CCcchHHHhhhhhhheeccCcCceeeeeccHHHH
Confidence 5322 112234567788899999999886 3456777888899999999999998887777788
Q ss_pred cCCcEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccc
Q 036448 420 TNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAME 497 (580)
Q Consensus 420 ~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 497 (580)
.+|++|+++.| .++.+|. ++.++ |+.|.+.+.. |..- |. +..++.+.+|+.+...+.
T Consensus 268 ~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----Gi-------------PSGIGKL~~Levf~aanN- 326 (1255)
T KOG0444|consen 268 ENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFE-----GI-------------PSGIGKLIQLEVFHAANN- 326 (1255)
T ss_pred hhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-cccc-----CC-------------ccchhhhhhhHHHHhhcc-
Confidence 89999999998 5566664 78888 8888877532 3221 11 122567778888877663
Q ss_pred cccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcchH
Q 036448 498 ELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCALLE 554 (580)
Q Consensus 498 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~ 554 (580)
.|+-+ |+++..++.|+.|.++. +.|-++|+.+.-++.|+.|+++.+|++.
T Consensus 327 ~LElV------PEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 327 KLELV------PEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccccC------chhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 44444 34677889999999976 4589999999889999999999999875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-21 Score=186.39 Aligned_cols=311 Identities=19% Similarity=0.218 Sum_probs=190.9
Q ss_pred CceEEEEEEecCCCcCcccccCCCcccEEEeccCCccccccccee-------eecccccccccccchh-hccCCCccEEe
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSIL-------SSFSSSKECIERLPKT-LCELYNLQKLD 260 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~-------L~l~~~~~~i~~lp~~-i~~L~~L~~L~ 260 (580)
.+++.+++..|.++.+|.-.....+|..|++.+|.+-.+....+. ||||.|. |.++|.. +..=.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~--is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL--ISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch--hhcccCCCCCCCCCceEEe
Confidence 455555555555555555555555566666655543333333221 8888888 8888854 66667889999
Q ss_pred ccCCccccccc-hhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeE
Q 036448 261 IRRCRNLKELP-AGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGI 338 (580)
Q Consensus 261 L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i 338 (580)
|++|. ++.+- ..+..+.+|-.|.|++| .++.+|.. |.+|++|+.|++....... .....+..|.+|++|+.
T Consensus 180 La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri--ve~ltFqgL~Sl~nlkl--- 252 (873)
T KOG4194|consen 180 LASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI--VEGLTFQGLPSLQNLKL--- 252 (873)
T ss_pred ecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee--ehhhhhcCchhhhhhhh---
Confidence 99888 55553 34677888889999888 56667764 5669999998854332221 11223444444444332
Q ss_pred eCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-Ccchh
Q 036448 339 EGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLT 417 (580)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~ 417 (580)
.. +.+..+....+..+.+++.|++..|++. .-.-..+..++.|+.|++++|.+..+ ++...
T Consensus 253 qr----N~I~kL~DG~Fy~l~kme~l~L~~N~l~--------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 253 QR----NDISKLDDGAFYGLEKMEHLNLETNRLQ--------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hh----cCcccccCcceeeecccceeecccchhh--------------hhhcccccccchhhhhccchhhhheeecchhh
Confidence 11 2223344456778888888888888732 22234556778888888888888766 45556
Q ss_pred cccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccc
Q 036448 418 SLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIG 494 (580)
Q Consensus 418 ~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 494 (580)
..++|+.|+|++|. ++.+++ +..+. |++|.+++. ++.++.+.. +.++.+|+.|+|+
T Consensus 315 ftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a-------------------f~~lssL~~LdLr 373 (873)
T KOG4194|consen 315 FTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA-------------------FVGLSSLHKLDLR 373 (873)
T ss_pred hcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhH-------------------HHHhhhhhhhcCc
Confidence 77888888888874 444443 55566 777777763 344443322 3456777777776
Q ss_pred ccccccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceEEEecCc
Q 036448 495 AMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 495 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~i~~c~ 551 (580)
... + .|.... ....+..+|+|+.|.+.|++ ++.+|. .+..+++|++|++.+++
T Consensus 374 ~N~-l-s~~IED-aa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SNE-L-SWCIED-AAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred CCe-E-EEEEec-chhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 531 1 222211 22245567777777777755 777776 45567777777777765
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.3e-19 Score=204.99 Aligned_cols=318 Identities=20% Similarity=0.223 Sum_probs=216.1
Q ss_pred CCCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc-----e-eeecccccccccccchhhccCCCccEEe
Q 036448 187 FGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS-----I-LSSFSSSKECIERLPKTLCELYNLQKLD 260 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~-----~-~L~l~~~~~~i~~lp~~i~~L~~L~~L~ 260 (580)
.+.++|.|.+.++.+..+|..+ ...+|+.|++.++++-.+.... + .++|+++.. +..+|. ++.+++|++|+
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN-LKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCC-cCcCCc-cccCCcccEEE
Confidence 3567899999999888888877 5788999999888654443211 1 188887654 777875 88899999999
Q ss_pred ccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhh------------
Q 036448 261 IRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLK------------ 328 (580)
Q Consensus 261 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~------------ 328 (580)
|++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++..+.... ..+....++.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~--~~p~~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK--SFPDISTNISWLDLDETAIEEF 740 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc--ccccccCCcCeeecCCCccccc
Confidence 99998889999999999999999999998889999876 78888888865443211 0010001110
Q ss_pred ----cCCcCCceeEeCCCCCC---ChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcE
Q 036448 329 ----NLQLVRECGIEGLGNVL---YLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEK 401 (580)
Q Consensus 329 ----~L~~L~~l~i~~~~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 401 (580)
.+.+|..|.+..+.... .............++|+.|+++.|. ....++..+..+++|+.
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--------------~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--------------SLVELPSSIQNLHKLEH 806 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--------------CccccChhhhCCCCCCE
Confidence 11112222111110000 0000000111123567777777664 23345667788999999
Q ss_pred EEEeecC-CCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCC
Q 036448 402 LGIILYG-GNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSS 479 (580)
Q Consensus 402 L~l~~~~-~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (580)
|++++|. ...+|..+ .+++|+.|++++|..+..+|.. .+ |+.|++++. .++.++.
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~------------------- 863 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPW------------------- 863 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChH-------------------
Confidence 9999875 46678766 7999999999999988877753 35 888888863 3433322
Q ss_pred CccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCC-------------CCCCCcceEE
Q 036448 480 PSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYL-------------LQTTTLQDLT 546 (580)
Q Consensus 480 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~-------------~~l~~L~~L~ 546 (580)
++..+++|+.|++.+|++|+.++. ....+++|+.+++++|..|+.++-.- ..+++...+.
T Consensus 864 -si~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~ 936 (1153)
T PLN03210 864 -WIEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCIN 936 (1153)
T ss_pred -HHhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccc
Confidence 256899999999999999998766 45678999999999999988654210 1234445566
Q ss_pred EecCcchH
Q 036448 547 IWKCALLE 554 (580)
Q Consensus 547 i~~c~~l~ 554 (580)
+.+|.++.
T Consensus 937 f~nC~~L~ 944 (1153)
T PLN03210 937 FINCFNLD 944 (1153)
T ss_pred cccccCCC
Confidence 77777664
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=8.3e-21 Score=175.85 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=38.6
Q ss_pred ccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 509 KENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 509 ~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
++.++.|.+|.+|++.++. +..+|..++++++|++|+++++|-
T Consensus 498 ~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 3457889999999999866 999999999999999999999984
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.1e-20 Score=184.39 Aligned_cols=306 Identities=23% Similarity=0.242 Sum_probs=215.6
Q ss_pred CCceEEEEEEecCCCc--CcccccCCCcccEEEeccCCc------ccccccceeeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTS--FPMSIRGLDRLRTLLIYDRSD------FNLSLSSILSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~--~~~~~~~l~~Lr~L~l~~~~~------l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
.+.+|.+.+..|++.. +|..+.++..|.+|++++|+. +....+.+.|+||+|+ |.++|.+ +-+|+.|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~--IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN--IETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc--cccCCchHHHhhHhHhh
Confidence 4566667776666554 788888888888888888843 2333445668889988 9999988 569999999
Q ss_pred EeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeE
Q 036448 259 LDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGI 338 (580)
Q Consensus 259 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i 338 (580)
|||++|. +..+|+.+..|.+|++|++++|+...---..+..|++|++|.+...... ....+.++..+.+|..+.. +-
T Consensus 155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDl-S~ 231 (1255)
T KOG0444|consen 155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDL-SE 231 (1255)
T ss_pred hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccc-cc
Confidence 9999998 9999999999999999999999543211122445777888875433322 2233445555555443321 11
Q ss_pred eCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhc
Q 036448 339 EGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTS 418 (580)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~ 418 (580)
.+++. .+..+.++.+|+.|+++.|.+..... ....-.+|++|+++.|+.+.+|..+..
T Consensus 232 N~Lp~-------vPecly~l~~LrrLNLS~N~iteL~~---------------~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 232 NNLPI-------VPECLYKLRNLRRLNLSGNKITELNM---------------TEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred cCCCc-------chHHHhhhhhhheeccCcCceeeeec---------------cHHHHhhhhhhccccchhccchHHHhh
Confidence 22222 23457788999999999998543321 112235789999999999999999999
Q ss_pred ccCCcEEEEcCCCCC-CCCCC-CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccc
Q 036448 419 LTNLRNLYLRSCVKC-EHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGA 495 (580)
Q Consensus 419 l~~L~~L~L~~~~~l-~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 495 (580)
++.|+.|++.+|... +.+|. ++.+. |+.+...+ +.|+.+++. ++.++.|+.|.+..
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEg--------------------lcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEG--------------------LCRCVKLQKLKLDH 348 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchh--------------------hhhhHHHHHhcccc
Confidence 999999999988543 35664 78888 88888776 346666554 46889999998865
Q ss_pred cccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEe
Q 036448 496 MEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIW 548 (580)
Q Consensus 496 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~ 548 (580)
. .|- +.|+++.-+|-|+.|++..+++|.--|.--..-++|+.-+|.
T Consensus 349 N-rLi------TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 349 N-RLI------TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred c-cee------echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 3 332 345578899999999999999988766533333455554444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-19 Score=173.23 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=222.1
Q ss_pred CCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCccccccccee-------eecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSIL-------SSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~-------L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
..+++.|++.+|.+.++ ..++..++.||+|+++.|.+-.++..++. |+|++|. |+.+-.. |..|.+|.+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~--It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR--ITTLETGHFDSLNSLLT 201 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc--ccccccccccccchhee
Confidence 45789999999988875 44577788999999999866555544433 8999999 8888654 889999999
Q ss_pred EeccCCccccccchh-hhcccCCCeEEcCCCCCCccC-cccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCce
Q 036448 259 LDIRRCRNLKELPAG-IGKLKNMRSLLNGETDSLKYM-PVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVREC 336 (580)
Q Consensus 259 L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l 336 (580)
|.|+.|. +..+|.- +.+|++|+.|+|..| .++.. -..|..|.+|+.|.+...... .-....+-.+.++. .+
T Consensus 202 lkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~--kL~DG~Fy~l~kme---~l 274 (873)
T KOG4194|consen 202 LKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDIS--KLDDGAFYGLEKME---HL 274 (873)
T ss_pred eecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcc--cccCcceeeecccc---ee
Confidence 9999998 8888864 455999999999998 45544 345788899998875432221 12233344444443 33
Q ss_pred eEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCC-cc
Q 036448 337 GIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFP-KW 415 (580)
Q Consensus 337 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~ 415 (580)
++.. +.+..+....+.+++.|+.|++++|.+ ...-.++++..++|+.|+++.|.++.++ ..
T Consensus 275 ~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI--------------~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 275 NLET----NRLQAVNEGWLFGLTSLEQLDLSYNAI--------------QRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred eccc----chhhhhhcccccccchhhhhccchhhh--------------heeecchhhhcccceeEeccccccccCChhH
Confidence 3332 334455566788999999999999983 3445678888999999999999999985 56
Q ss_pred hhcccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccc
Q 036448 416 LTSLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLI 492 (580)
Q Consensus 416 l~~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 492 (580)
+..+..|++|.|+.|. +..+.. +..+. |+.|++++..---.+.+.. ..+.++++|++|+
T Consensus 337 f~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa-----------------~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA-----------------VAFNGLPSLRKLR 398 (873)
T ss_pred HHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-----------------hhhccchhhhhee
Confidence 7789999999999984 443332 45566 8888888744222222211 1145799999999
Q ss_pred ccccccccccccccccccccCCCCccceeeeccCCCCCCCC-cCCCCCCCcceEEEec
Q 036448 493 IGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALP-DYLLQTTTLQDLTIWK 549 (580)
Q Consensus 493 l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~i~~ 549 (580)
+.+. +++.++. -++..+++|++|++.++. +.++. ..+..+ .|++|.+..
T Consensus 399 l~gN-qlk~I~k-----rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 399 LTGN-QLKSIPK-----RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecCc-eeeecch-----hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcc
Confidence 9885 6777665 256689999999999988 66664 455555 888887643
No 11
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.68 E-value=5.8e-18 Score=163.92 Aligned_cols=107 Identities=39% Similarity=0.785 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhccccc---ccccchhHHHhhhcCCCCcchhhhh
Q 036448 10 DRENLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVEE---IGQGLLAPLLLSYNDLPSNSMVKQC 86 (580)
Q Consensus 10 ~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~l~~sy~~L~~~~~~k~~ 86 (580)
..+.+++++++|+++|+|+||||+++|++|+.+.++.+|+.+++.......+ ....+...+.+||+.||+ ++|.|
T Consensus 177 ~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~ 254 (287)
T PF00931_consen 177 SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRC 254 (287)
T ss_dssp --TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc--cHHHH
Confidence 4566788999999999999999999999997766788999998865444422 235688999999999999 89999
Q ss_pred hhhccccCCCcccCHHHHHHHHHHcCCccCCC
Q 036448 87 FSYCAVFPKNYNMNKEELISLWMAQGYLNTEE 118 (580)
Q Consensus 87 fl~~~~f~~~~~i~~~~Li~~w~a~g~~~~~~ 118 (580)
|+|||+||+++.|+++.|+++|+++||+...+
T Consensus 255 f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 255 FLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred HhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999999999999999999987654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=8e-19 Score=162.84 Aligned_cols=263 Identities=24% Similarity=0.290 Sum_probs=193.4
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.+..+.+++|.++.+...+.++..|.+|.+.+|. +.++|++|+++..++.|+.++|+ +.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-------------------l~~lp~aig~l~~l~~l~vs~n~-ls~ 105 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-------------------LSQLPAAIGELEALKSLNVSHNK-LSE 105 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch-------------------hhhCCHHHHHHHHHHHhhcccch-Hhh
Confidence 4566778888887777778888888888888876 78888889999999999999887 888
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhH
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDE 349 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~ 349 (580)
+|+.++.+.+|+.|+.+.+ .+..+|++|+.+..|..|+.. .++. ...+..+..+.+
T Consensus 106 lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~--~N~i-~slp~~~~~~~~-------------------- 161 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDAT--NNQI-SSLPEDMVNLSK-------------------- 161 (565)
T ss_pred ccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcc--cccc-ccCchHHHHHHH--------------------
Confidence 8988999999999998888 677888888888888888732 2221 111222222222
Q ss_pred HHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcC
Q 036448 350 VERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRS 429 (580)
Q Consensus 350 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 429 (580)
+..+.+.+|. ....+...-.+..|++|+...|....+|+.++.+.+|..|++..
T Consensus 162 -----------l~~l~~~~n~---------------l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 162 -----------LSKLDLEGNK---------------LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred -----------HHHhhccccc---------------hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 2222222222 11122222225566777777777788899999999999999998
Q ss_pred CCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccccccccc
Q 036448 430 CVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITR 508 (580)
Q Consensus 430 ~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 508 (580)
| ++..+|.+.... |++|+++. ++++.++.+. ..++++|..|++++. ++++.+.
T Consensus 216 N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~-------------------~~~L~~l~vLDLRdN-klke~Pd---- 269 (565)
T KOG0472|consen 216 N-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEH-------------------LKHLNSLLVLDLRDN-KLKEVPD---- 269 (565)
T ss_pred c-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHH-------------------hcccccceeeecccc-ccccCch----
Confidence 8 567788887777 88888876 3355554433 347889999999885 6777665
Q ss_pred ccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 509 KENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 509 ~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
.+.-+.+|++|+++++. +..+|..++++ .|+.|.+.|+|.
T Consensus 270 --e~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 270 --EICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred --HHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 55678899999999966 99999999999 999999999985
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=170.98 Aligned_cols=211 Identities=27% Similarity=0.325 Sum_probs=125.1
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
++++|++++|.+..+|..+..+++|+.|.++.|- |.++|.+++++.+|++|.|.+|. +..
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-------------------i~~vp~s~~~~~~l~~lnL~~n~-l~~ 105 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-------------------IRSVPSSCSNMRNLQYLNLKNNR-LQS 105 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh-------------------HhhCchhhhhhhcchhheeccch-hhc
Confidence 3889999999999999999999999999888774 78888888888888888888877 888
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccC--CCC-------------ccChhhhhcCCcCC
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVD--GSN-------------TCRLESLKNLQLVR 334 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~--~~~-------------~~~l~~L~~L~~L~ 334 (580)
+|.++..+.+|++|++++| .....|.-+..++.+..+..... .... +.. ...+.+...++.
T Consensus 106 lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N-~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNN-EKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH-- 181 (1081)
T ss_pred CchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcc-hhhhhhccccchhhhhhhhhcccchhcchhhhhe--
Confidence 8888888888888888888 56666766666665555552211 0000 000 000111111111
Q ss_pred ceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhH----HhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC
Q 036448 335 ECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEE----RRRKKEKDEQLLKALQLPLSVEKLGIILYGGN 410 (580)
Q Consensus 335 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 410 (580)
.+.+.. .......+..+.+|+.+....|.+....... ..............-..+.+|++++++.+...
T Consensus 182 ~ldLr~-------N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRY-------NEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeeccc-------chhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh
Confidence 011100 0011222333344444433333321111000 00000000111222334578888888888888
Q ss_pred CCCcchhcccCCcEEEEcCCC
Q 036448 411 IFPKWLTSLTNLRNLYLRSCV 431 (580)
Q Consensus 411 ~lp~~l~~l~~L~~L~L~~~~ 431 (580)
.+|.|+..+.+|+.|...+|.
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cchHHHHhcccceEecccchh
Confidence 888888888888888887764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=7e-14 Score=147.56 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=20.1
Q ss_pred ccceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 517 RLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 517 ~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 45556666544 55666655556666666666654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=3.5e-16 Score=160.07 Aligned_cols=239 Identities=23% Similarity=0.253 Sum_probs=115.9
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeec
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVG 313 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~ 313 (580)
++++.+. +..+|++++.+.+|+.|+..+|. +..+|..+...++|+.|.+..| .+..+|+..+.+++|++|++....
T Consensus 246 ~dis~n~--l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 246 LDISHNN--LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eecchhh--hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc
Confidence 4555555 55555555556666666655555 4555555555566666665555 455555555556666666532111
Q ss_pred CccCCCCccChhhhhcCCc-CCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhc
Q 036448 314 GGVDGSNTCRLESLKNLQL-VRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKA 392 (580)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (580)
... .+..+ +..+.. |+.++....+ ........-..+..|+.|.+..|. ..+..+..
T Consensus 322 L~~---lp~~~--l~v~~~~l~~ln~s~n~----l~~lp~~~e~~~~~Lq~LylanN~--------------Ltd~c~p~ 378 (1081)
T KOG0618|consen 322 LPS---LPDNF--LAVLNASLNTLNVSSNK----LSTLPSYEENNHAALQELYLANNH--------------LTDSCFPV 378 (1081)
T ss_pred ccc---cchHH--HhhhhHHHHHHhhhhcc----ccccccccchhhHHHHHHHHhcCc--------------ccccchhh
Confidence 110 00000 000000 1111111000 000000111122334444444443 33445556
Q ss_pred CCCCCCCcEEEEeecCCCCCCcch-hcccCCcEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCC
Q 036448 393 LQLPLSVEKLGIILYGGNIFPKWL-TSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESS 469 (580)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~ 469 (580)
+..+.+|+.|++++|....+|... .++..|+.|+|+|| +++.+|. +..++ |++|...+. .+..+++
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe--------- 447 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFPE--------- 447 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeechh---------
Confidence 667778888888888777777543 47777888888887 4555543 44455 665555432 1222221
Q ss_pred CCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCC
Q 036448 470 EDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 528 (580)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 528 (580)
+..+++|+.++++. .+|+.+......| -|+|++|+++||..
T Consensus 448 ------------~~~l~qL~~lDlS~-N~L~~~~l~~~~p-----~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 ------------LAQLPQLKVLDLSC-NNLSEVTLPEALP-----SPNLKYLDLSGNTR 488 (1081)
T ss_pred ------------hhhcCcceEEeccc-chhhhhhhhhhCC-----CcccceeeccCCcc
Confidence 34556666666643 2444443311111 15666666666654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.9e-15 Score=123.20 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=118.1
Q ss_pred cCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCC
Q 036448 209 RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 209 ~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
..+++...|.+++|+ ++.+|+.|..|.+|++|++.+|+ +.++|.+|+.+++|++|+++-|
T Consensus 30 f~~s~ITrLtLSHNK-------------------l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-------------------LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred cchhhhhhhhcccCc-------------------eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh
Confidence 345566666666655 89999999999999999999999 9999999999999999999988
Q ss_pred CCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEe
Q 036448 289 DSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEF 368 (580)
Q Consensus 289 ~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 368 (580)
.+..+|.++|.++.|+.|++....-+. ...+ + .+..++.|+.|.++.
T Consensus 90 -rl~~lprgfgs~p~levldltynnl~e-~~lp---g----------------------------nff~m~tlralyl~d 136 (264)
T KOG0617|consen 90 -RLNILPRGFGSFPALEVLDLTYNNLNE-NSLP---G----------------------------NFFYMTTLRALYLGD 136 (264)
T ss_pred -hhhcCccccCCCchhhhhhcccccccc-ccCC---c----------------------------chhHHHHHHHHHhcC
Confidence 788999999999999999964332221 0111 1 122333444444444
Q ss_pred ecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCC
Q 036448 369 GRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVK 432 (580)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 432 (580)
|. .+.++..++.+++|+.|.+..+....+|..++.++.|+.|.+.+|..
T Consensus 137 nd---------------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 137 ND---------------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred CC---------------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 43 24456667778888888888888888899999999999999988853
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=9.5e-13 Score=139.96 Aligned_cols=91 Identities=21% Similarity=0.393 Sum_probs=53.2
Q ss_pred CceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcccc
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLK 268 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~ 268 (580)
++...|.+.++.+..+|..+. ++|+.|++++|. ++.+|..+. .+|++|++++|. +.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-------------------LtsLP~~l~--~nL~~L~Ls~N~-Lt 233 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-------------------LKSLPENLQ--GNIKTLYANSNQ-LT 233 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-------------------CCcCChhhc--cCCCEEECCCCc-cc
Confidence 455677777777777776553 467777777765 555555443 356666666655 55
Q ss_pred ccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 269 ELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 269 ~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
.+|..+. .+|+.|++++| .+..+|..+. ++|+.|+
T Consensus 234 sLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 234 SIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLD 268 (754)
T ss_pred cCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEE
Confidence 5665443 35666666666 3445555442 3455554
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.38 E-value=8.7e-13 Score=142.44 Aligned_cols=309 Identities=23% Similarity=0.225 Sum_probs=188.4
Q ss_pred cCCCcccEEEeccCCcccccccc----e-eeecccccccccccchh-hccCCCccEEeccCCccccccchhhhcccCCCe
Q 036448 209 RGLDRLRTLLIYDRSDFNLSLSS----I-LSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRS 282 (580)
Q Consensus 209 ~~l~~Lr~L~l~~~~~l~l~~~~----~-~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 282 (580)
......|...+.+|....+.+.. + .|-+..+...+..++.. |..++.|++|||++|..+.++|.+|++|.+||+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34567788888877554444332 1 14444442114555554 678999999999999999999999999999999
Q ss_pred EEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccc
Q 036448 283 LLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLL 362 (580)
Q Consensus 283 L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~ 362 (580)
|+++++ .+..+|.++++|.+|.+|++...+.... ..+-...|++|+.+.+..... ..+......+..+.+|+
T Consensus 600 L~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~~i~~~L~~Lr~L~l~~s~~--~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 600 LDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLES-----IPGILLELQSLRVLRLPRSAL--SNDKLLLKELENLEHLE 671 (889)
T ss_pred ccccCC-CccccchHHHHHHhhheecccccccccc-----ccchhhhcccccEEEeecccc--ccchhhHHhhhcccchh
Confidence 999999 7889999999999999999765554321 123334466777766665331 11222222345666666
Q ss_pred eeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCC-C---
Q 036448 363 RLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP-P--- 438 (580)
Q Consensus 363 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~-~--- 438 (580)
.+.+..... ................+.+.+.++.....+..+..+.+|+.|.+.+|...+... +
T Consensus 672 ~ls~~~~s~------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~ 739 (889)
T KOG4658|consen 672 NLSITISSV------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES 739 (889)
T ss_pred hheeecchh------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc
Confidence 666654430 001111111111222334444445555667778899999999999997654221 1
Q ss_pred --CCC-cc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccccccccc----cc
Q 036448 439 --LGK-LP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITR----KE 510 (580)
Q Consensus 439 --l~~-l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~----~~ 510 (580)
... +| +..+.+.+|..++.... ..-.|+|+.|.+..|+.++........ ..
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~r~l~~---------------------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHMLRDLTW---------------------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred cchhhhHHHHHHHHhhccccccccch---------------------hhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 111 44 55555556655544322 346789999999999888776542111 11
Q ss_pred ccCCCCcccee-eeccCCCCCCCCcCCCCCCCcceEEEecCcchHHHhc
Q 036448 511 NISIMPRLSSL-EVRSCNKLKALPDYLLQTTTLQDLTIWKCALLENRYR 558 (580)
Q Consensus 511 ~~~~l~~L~~L-~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~ 558 (580)
....|.+++.+ .+.+-+.++++-..-...+.|+.+.+..||++.....
T Consensus 799 ~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 799 LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 12345555555 3544444443322212245599999999998875543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.1e-12 Score=135.26 Aligned_cols=131 Identities=22% Similarity=0.258 Sum_probs=86.0
Q ss_pred cccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCC
Q 036448 359 QNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPP 438 (580)
Q Consensus 359 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~ 438 (580)
++|+.|+++.|.+.. ++ ..+.+|+.|.+.+|....+|.. ..+|+.|+|++| .+..+|.
T Consensus 302 ~~L~~LdLS~N~L~~---------------Lp---~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~ 359 (788)
T PRK15387 302 PGLQELSVSDNQLAS---------------LP---ALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPT 359 (788)
T ss_pred cccceeECCCCcccc---------------CC---CCcccccccccccCcccccccc---ccccceEecCCC-ccCCCCC
Confidence 467777777776221 11 1245688888888888777752 257889999887 4555664
Q ss_pred CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCc
Q 036448 439 LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPR 517 (580)
Q Consensus 439 l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~ 517 (580)
+ .+ |+.|+++++. +..++. ..++|+.|+++++ .+..++. ..++
T Consensus 360 l--p~~L~~L~Ls~N~-L~~LP~-----------------------l~~~L~~LdLs~N-~Lt~LP~---------l~s~ 403 (788)
T PRK15387 360 L--PSELYKLWAYNNR-LTSLPA-----------------------LPSGLKELIVSGN-RLTSLPV---------LPSE 403 (788)
T ss_pred C--Ccccceehhhccc-cccCcc-----------------------cccccceEEecCC-cccCCCC---------cccC
Confidence 2 23 7777776532 332211 2346888888775 4554433 3468
Q ss_pred cceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 518 LSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 518 L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
|+.|++++|. ++.+|.. +.+|+.|++++|.
T Consensus 404 L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 404 LKELMVSGNR-LTSLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred CCEEEccCCc-CCCCCcc---hhhhhhhhhccCc
Confidence 9999999977 8899865 4578889988865
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=3.3e-14 Score=117.07 Aligned_cols=163 Identities=24% Similarity=0.242 Sum_probs=120.7
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
...+++|.+++|++..+|+.+..+.+|+.|++++|+ ++++|.+|+.|++|+.|++.-|. +
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-------------------ie~lp~~issl~klr~lnvgmnr-l 91 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-------------------IEELPTSISSLPKLRILNVGMNR-L 91 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-------------------hhhcChhhhhchhhhheecchhh-h
Confidence 567889999999999999999999999999988886 89999999999999999999888 8
Q ss_pred cccchhhhcccCCCeEEcCCCCC-CccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 268 KELPAGIGKLKNMRSLLNGETDS-LKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~-~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
..+|.++|.++.|+.||+..|.. ...+|..+..|+.|+.|.+.. +.. ...+ ....+|+
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d--ndf-e~lp---~dvg~lt--------------- 150 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD--NDF-EILP---PDVGKLT--------------- 150 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC--CCc-ccCC---hhhhhhc---------------
Confidence 88999999999999999988743 346788788888888776321 111 1111 2223333
Q ss_pred hhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcc
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSL 419 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l 419 (580)
+|+.|.++.|. ...++..++.+..|+.|+|.++....+|+.++.+
T Consensus 151 -------------~lqil~lrdnd---------------ll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 151 -------------NLQILSLRDND---------------LLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred -------------ceeEEeeccCc---------------hhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 33333333332 2344555666778888888888888888776643
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=5.9e-12 Score=133.96 Aligned_cols=234 Identities=17% Similarity=0.223 Sum_probs=137.7
Q ss_pred ccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCcc
Q 036448 243 IERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTC 322 (580)
Q Consensus 243 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~ 322 (580)
++.+|..+. .+|+.|+|++|. +..+|..+. .+|++|++++| .+..+|..+. .+|+.|++..+... ..+.
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~---~LP~ 258 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRIT---ELPE 258 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccC---cCCh
Confidence 666665543 357777777765 666776554 46777777766 4566665443 35666654322111 1111
Q ss_pred ChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEE
Q 036448 323 RLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKL 402 (580)
Q Consensus 323 ~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 402 (580)
.+. +.|+.|.+.+. .+..+.. .+ ..+|+.|+++.|.+.. ++.. .+++|+.|
T Consensus 259 ~l~-----s~L~~L~Ls~N-~L~~LP~----~l--~~sL~~L~Ls~N~Lt~---------------LP~~--lp~sL~~L 309 (754)
T PRK15370 259 RLP-----SALQSLDLFHN-KISCLPE----NL--PEELRYLSVYDNSIRT---------------LPAH--LPSGITHL 309 (754)
T ss_pred hHh-----CCCCEEECcCC-ccCcccc----cc--CCCCcEEECCCCcccc---------------Cccc--chhhHHHH
Confidence 111 23444444321 1111110 11 1356667766665221 1111 12467788
Q ss_pred EEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCc
Q 036448 403 GIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPS 481 (580)
Q Consensus 403 ~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (580)
++++|....+|..+ .++|+.|++++|. +..+|.. -.+ |+.|+++++. +..++..
T Consensus 310 ~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~~-------------------- 364 (754)
T PRK15370 310 NVQSNSLTALPETL--PPGLKTLEAGENA-LTSLPAS-LPPELQVLDVSKNQ-ITVLPET-------------------- 364 (754)
T ss_pred HhcCCccccCCccc--cccceeccccCCc-cccCChh-hcCcccEEECCCCC-CCcCChh--------------------
Confidence 88888887777655 3689999999985 4556641 125 9999999863 4333221
Q ss_pred cccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCC----CCCCcceEEEecCcch
Q 036448 482 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLL----QTTTLQDLTIWKCALL 553 (580)
Q Consensus 482 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~----~l~~L~~L~i~~c~~l 553 (580)
-.++|+.|+++++ .+..++. .+ .++|+.|++++|. +..+|..+. .++++..|++.++|.-
T Consensus 365 --lp~~L~~LdLs~N-~Lt~LP~------~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 365 --LPPTITTLDVSRN-ALTNLPE------NL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --hcCCcCEEECCCC-cCCCCCH------hH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2368999999987 4665543 11 2479999999976 888887543 3588999999999853
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=4.3e-12 Score=118.41 Aligned_cols=244 Identities=17% Similarity=0.096 Sum_probs=146.4
Q ss_pred ccCCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCccccccccee--------eecccccccccccchh-hccCC
Q 036448 185 NSFGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSIL--------SSFSSSKECIERLPKT-LCELY 254 (580)
Q Consensus 185 ~~~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~--------L~l~~~~~~i~~lp~~-i~~L~ 254 (580)
...+.....+.+..|++..+|+ +|..+++||.|++++|.+-.+....+. ++++++. |+.+|.. |++|.
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk--I~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK--ITDLPKGAFGGLS 140 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc--hhhhhhhHhhhHH
Confidence 3447888999999999999875 588999999999999976555544432 5556677 9999977 88999
Q ss_pred CccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCC----------CCccC
Q 036448 255 NLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDG----------SNTCR 323 (580)
Q Consensus 255 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~----------~~~~~ 323 (580)
.|+.|.+.-|+.-......+..|++|..|.+..| .++.++. .+..+.+++++.+-.....-.. ..+..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 9999999888733344456788999999999988 6777776 5777888887764211100000 00000
Q ss_pred hhhhhcCCc--CCceeEe------------CCCC---CCC--hhHHHhcccccccccceeEEEeecccCCchhHHh----
Q 036448 324 LESLKNLQL--VRECGIE------------GLGN---VLY--LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERR---- 380 (580)
Q Consensus 324 l~~L~~L~~--L~~l~i~------------~~~~---~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---- 380 (580)
++..+.... ++.-.+. +++. ... ........+.++++|+.|+++.|.+....+....
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 000000000 0000000 0000 000 0011222367788888888888876543322100
Q ss_pred ----hh-hhhHH-HHhhcCCCCCCCcEEEEeecCCCCC-CcchhcccCCcEEEEcCCC
Q 036448 381 ----RK-KEKDE-QLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCV 431 (580)
Q Consensus 381 ----~~-~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 431 (580)
.. ..... ..-..+..+..|+.|++.+|.++.+ |..+..+.+|.+|.+-.|+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 00 00011 1112345667788888888887665 6666677788888877654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=1.2e-11 Score=121.95 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=22.3
Q ss_pred ccchhhccCCCccEEeccCCccc------cccchhhhcccCCCeEEcCCCC
Q 036448 245 RLPKTLCELYNLQKLDIRRCRNL------KELPAGIGKLKNMRSLLNGETD 289 (580)
Q Consensus 245 ~lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~l~~L~~L~l~~~~ 289 (580)
.++..+...++|++|+++++..- ..++..+.++++|+.|++++|.
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 34444555555666666554411 1223344455566666665553
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.00 E-value=1.8e-11 Score=114.39 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=87.0
Q ss_pred cccceeeecccccccccccchh-hccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCC
Q 036448 228 SLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLR 305 (580)
Q Consensus 228 ~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~ 305 (580)
+...+.++|..|+ |+.+|+. |+.+++|+.|||++|..-..-|..+..+.+|-.|-+.++..++.+|.+ ++.|.+|+
T Consensus 66 P~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3334456667777 9999976 899999999999999833445788999999999999997799999986 88999999
Q ss_pred cCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeec
Q 036448 306 TLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGR 370 (580)
Q Consensus 306 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 370 (580)
-|.+. .+....... ..+..|+.++.|.+.+ +.+..+....+..+..++.+.+..|.
T Consensus 144 rLllN--an~i~Cir~---~al~dL~~l~lLslyD----n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLN--ANHINCIRQ---DALRDLPSLSLLSLYD----NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcC--hhhhcchhH---HHHHHhhhcchhcccc----hhhhhhccccccchhccchHhhhcCc
Confidence 88742 222211112 3344444454444433 12222333345555666666555444
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=1.4e-10 Score=114.34 Aligned_cols=250 Identities=20% Similarity=0.135 Sum_probs=126.9
Q ss_pred ccchhhccCCCccEEeccCCccc-----cccchhhhcccCCCeEEcCCCCCC------ccCcccCCCCCCCCcCCceeec
Q 036448 245 RLPKTLCELYNLQKLDIRRCRNL-----KELPAGIGKLKNMRSLLNGETDSL------KYMPVGISKLTSLRTLDKFVVG 313 (580)
Q Consensus 245 ~lp~~i~~L~~L~~L~L~~~~~l-----~~lp~~i~~l~~L~~L~l~~~~~~------~~lp~~i~~L~~L~~L~~~~~~ 313 (580)
..+.-+..+.+|++|++++|. + ..++..+...++|++|+++++... ..++..+..+++|+.|++.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~--- 89 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS--- 89 (319)
T ss_pred chHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEcc---
Confidence 344456677789999999988 4 346666777888999999887322 1122334455555555532
Q ss_pred CccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcC
Q 036448 314 GGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKAL 393 (580)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (580)
+..-.............. ++|+.|+++.|.+.+. ....+...+
T Consensus 90 --------------------------~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~----------~~~~l~~~l 132 (319)
T cd00116 90 --------------------------DNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDR----------GLRLLAKGL 132 (319)
T ss_pred --------------------------CCCCChhHHHHHHHHhcc-CcccEEEeeCCccchH----------HHHHHHHHH
Confidence 211110011111111111 4466666666653210 112222333
Q ss_pred CCC-CCCcEEEEeecCCC-----CCCcchhcccCCcEEEEcCCCCCC-CCC----CCCCcc-ccceecccccCceEeCcc
Q 036448 394 QLP-LSVEKLGIILYGGN-----IFPKWLTSLTNLRNLYLRSCVKCE-HLP----PLGKLP-LEKLVIIHLKSVKRVGNE 461 (580)
Q Consensus 394 ~~~-~~L~~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~l~-~l~----~l~~l~-L~~L~l~~~~~l~~~~~~ 461 (580)
... ++|+.|++++|... .++..+..+++|++|++++|.... .++ .+...+ |+.|++++|. +...+..
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 211 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS 211 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH
Confidence 333 66777777766654 123344455667777777664331 111 123345 6666666653 2111100
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCC-----CCCcCC
Q 036448 462 FLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLK-----ALPDYL 536 (580)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-----~lp~~~ 536 (580)
... ..+..+++|+.|+++++. +................+.|++|++++|. ++ .++..+
T Consensus 212 ~l~---------------~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~ 274 (319)
T cd00116 212 ALA---------------ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVL 274 (319)
T ss_pred HHH---------------HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHH
Confidence 000 012356778888887753 33211100000000123688888888876 43 233444
Q ss_pred CCCCCcceEEEecCcch
Q 036448 537 LQTTTLQDLTIWKCALL 553 (580)
Q Consensus 537 ~~l~~L~~L~i~~c~~l 553 (580)
..+++|+++++++|.--
T Consensus 275 ~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 275 AEKESLLELDLRGNKFG 291 (319)
T ss_pred hcCCCccEEECCCCCCc
Confidence 55678888888887643
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=8.1e-11 Score=115.13 Aligned_cols=190 Identities=23% Similarity=0.321 Sum_probs=134.4
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.....+++.|++..+|..++.+..|..+.++.|. +..+|..+++|..|.+|||+.|+ +..
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-------------------~r~ip~~i~~L~~lt~l~ls~Nq-lS~ 135 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC-------------------IRTIPEAICNLEALTFLDLSSNQ-LSH 135 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc-------------------ceecchhhhhhhHHHHhhhccch-hhc
Confidence 4456788888998899999999999999988875 88899999999999999999998 889
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhH
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDE 349 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~ 349 (580)
+|..+..|+ |+.|-+++| +++.+|.+|+.+..|..|+... +.. ......+..|..|+
T Consensus 136 lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~--nei----~slpsql~~l~slr--------------- 192 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK--NEI----QSLPSQLGYLTSLR--------------- 192 (722)
T ss_pred CChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhh--hhh----hhchHHhhhHHHHH---------------
Confidence 999888887 899999888 7889999999888888888432 221 11223333333333
Q ss_pred HHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcC
Q 036448 350 VERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRS 429 (580)
Q Consensus 350 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 429 (580)
.|.++.|. ...++..+. .-.|..|++++|+...+|-.|..++.|++|.|.+
T Consensus 193 -------------~l~vrRn~---------------l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 193 -------------DLNVRRNH---------------LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred -------------HHHHhhhh---------------hhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 33332222 122333333 3346677777777888888888888888888877
Q ss_pred CCCCCCCCC----CCCcc-ccceecccc
Q 036448 430 CVKCEHLPP----LGKLP-LEKLVIIHL 452 (580)
Q Consensus 430 ~~~l~~l~~----l~~l~-L~~L~l~~~ 452 (580)
|+. ++.|. -|... .++|+..-|
T Consensus 244 NPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 244 NPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCC-CCChHHHHhccceeeeeeecchhc
Confidence 753 33332 34455 666766655
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.3e-08 Score=101.43 Aligned_cols=179 Identities=31% Similarity=0.351 Sum_probs=125.3
Q ss_pred CceEEEEEEecCCCcCcccccCCC-cccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLD-RLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..++.+++.++.+..++.....++ +|+.|++++|. +..+|..++.+++|+.|++++|+ +
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-------------------i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-------------------IESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-------------------hhhhhhhhhccccccccccCCch-h
Confidence 467788888888888887777774 88888777775 88888778999999999999998 8
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
..+|...+.+++|+.|++++| .+..+|..++.+..|++|.+.... . ...+..+.++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~--~----~~~~~~~~~~~---------------- 232 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS--I----IELLSSLSNLK---------------- 232 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc--c----eecchhhhhcc----------------
Confidence 889987779999999999998 788888877777778888743221 0 11122222222
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEE
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYL 427 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 427 (580)
++..+.+..+.+ ......+..+++++.|+++++....++. +..+.+|+.|++
T Consensus 233 ------------~l~~l~l~~n~~---------------~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~ 284 (394)
T COG4886 233 ------------NLSGLELSNNKL---------------EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDL 284 (394)
T ss_pred ------------cccccccCCcee---------------eeccchhccccccceecccccccccccc-ccccCccCEEec
Confidence 222222222220 1113455567778888888888888777 778889999999
Q ss_pred cCCCCCCCCCC
Q 036448 428 RSCVKCEHLPP 438 (580)
Q Consensus 428 ~~~~~l~~l~~ 438 (580)
+++.....++.
T Consensus 285 s~n~~~~~~~~ 295 (394)
T COG4886 285 SGNSLSNALPL 295 (394)
T ss_pred cCccccccchh
Confidence 88865554443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=4.4e-08 Score=84.94 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCceEEEEEEecCCCcCccccc-CCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIR-GLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
+.+.+.|++.++.+..+. .+. .+.+|+.|++++|. |+.++ .+..+++|++|++++|.
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-------------------I~~l~-~l~~L~~L~~L~L~~N~- 75 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-------------------ITKLE-GLPGLPRLKTLDLSNNR- 75 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---------------------S--T-T----TT--EEE--SS--
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-------------------Ccccc-CccChhhhhhcccCCCC-
Confidence 456788999999888654 344 57888999888887 44443 24455556666666555
Q ss_pred ccccchhhh-cccCCCeEEcCCC
Q 036448 267 LKELPAGIG-KLKNMRSLLNGET 288 (580)
Q Consensus 267 l~~lp~~i~-~l~~L~~L~l~~~ 288 (580)
+..++..+. .+++|++|++++|
T Consensus 76 I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 76 ISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS
T ss_pred CCccccchHHhCCcCCEEECcCC
Confidence 555544342 4556666666555
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=97.53 Aligned_cols=157 Identities=18% Similarity=0.069 Sum_probs=91.7
Q ss_pred hhccCCCccEEeccCCccccccc--hhhhcccCCCeEEcCCCCCCcc---CcccCCCCCCCCcCCceeecCccCCCCccC
Q 036448 249 TLCELYNLQKLDIRRCRNLKELP--AGIGKLKNMRSLLNGETDSLKY---MPVGISKLTSLRTLDKFVVGGGVDGSNTCR 323 (580)
Q Consensus 249 ~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~---lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 323 (580)
.=+++.+|+...|.+|. +...+ .....|++++.||++.| .+.. +-.-...|++|+.|++....... .
T Consensus 116 kQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~------~ 187 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSN------F 187 (505)
T ss_pred HhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccC------C
Confidence 34578889999999887 66555 35677999999999988 3322 11224577788888743211110 0
Q ss_pred hhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEE
Q 036448 324 LESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLG 403 (580)
Q Consensus 324 l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 403 (580)
.++ ..-..+++|+.|.++.|++. ...+...+..+|+|+.|+
T Consensus 188 ~~s--------------------------~~~~~l~~lK~L~l~~CGls-------------~k~V~~~~~~fPsl~~L~ 228 (505)
T KOG3207|consen 188 ISS--------------------------NTTLLLSHLKQLVLNSCGLS-------------WKDVQWILLTFPSLEVLY 228 (505)
T ss_pred ccc--------------------------cchhhhhhhheEEeccCCCC-------------HHHHHHHHHhCCcHHHhh
Confidence 000 00113356666666666531 233444555667777777
Q ss_pred EeecCC-CCCCcchhcccCCcEEEEcCCCCCC--CCCCCCCcc-ccceecccc
Q 036448 404 IILYGG-NIFPKWLTSLTNLRNLYLRSCVKCE--HLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 404 l~~~~~-~~lp~~l~~l~~L~~L~L~~~~~l~--~l~~l~~l~-L~~L~l~~~ 452 (580)
+.+|.. ........-++.|+.|+|++|..+. ..+..+.+| |..|.++.+
T Consensus 229 L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 229 LEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 777642 1112223346778888888876554 334566777 777777654
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=1.1e-08 Score=96.82 Aligned_cols=287 Identities=16% Similarity=0.148 Sum_probs=150.3
Q ss_pred ccCCCccEEeccCCccccccc-hhh-hcccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCCceeecCccCCCCccChhh
Q 036448 251 CELYNLQKLDIRRCRNLKELP-AGI-GKLKNMRSLLNGETDSLKYMPV--GISKLTSLRTLDKFVVGGGVDGSNTCRLES 326 (580)
Q Consensus 251 ~~L~~L~~L~L~~~~~l~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 326 (580)
.+.+++++|++.+|..++.-. .++ ..+++|++|++..|..++..-- -...+++|.+|++..+..............
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 456667777777776543211 122 3467777777777655543211 133466666666655443321111111111
Q ss_pred hhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEee
Q 036448 327 LKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIIL 406 (580)
Q Consensus 327 L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 406 (580)
.. .++.+...+|..... +.....-..+.-+..+++..+.. ..+..+...-.....|+.|..++
T Consensus 241 ~~---~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~------------lTD~~~~~i~~~c~~lq~l~~s~ 303 (483)
T KOG4341|consen 241 CK---ELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQ------------LTDEDLWLIACGCHALQVLCYSS 303 (483)
T ss_pred ch---hhhhhhhcccccccH--HHHHHHhccChHhhccchhhhcc------------ccchHHHHHhhhhhHhhhhcccC
Confidence 11 222222223322111 00001111222233333333320 01122333334456677777777
Q ss_pred cCCCC-CCc-ch-hcccCCcEEEEcCCCCCCCCC--CC-CCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCC
Q 036448 407 YGGNI-FPK-WL-TSLTNLRNLYLRSCVKCEHLP--PL-GKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSS 479 (580)
Q Consensus 407 ~~~~~-lp~-~l-~~l~~L~~L~L~~~~~l~~l~--~l-~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (580)
+.... .+- .+ .+..+|+.|.+.+|..++..- .+ ...+ |+.+++..|...... .+...
T Consensus 304 ~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-------------- 367 (483)
T KOG4341|consen 304 CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-------------- 367 (483)
T ss_pred CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh--------------
Confidence 65521 111 11 267888888888887655321 22 2344 777777766432211 11111
Q ss_pred CccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCC-CCcCCCCCCCcceEEEecCcchHHHhc
Q 036448 480 PSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA-LPDYLLQTTTLQDLTIWKCALLENRYR 558 (580)
Q Consensus 480 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-lp~~~~~l~~L~~L~i~~c~~l~~~~~ 558 (580)
..++|.|+.|.++.|...++-..... ...-..+..|+.+.+++|+.++. .-+.+..+++|+.+++.+|..+.+...
T Consensus 368 --s~~C~~lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 368 --SRNCPRLRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred --ccCCchhccCChhhhhhhhhhhhhhh-hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 24789999999998877665422111 11234678899999999997653 234566789999999999988765432
Q ss_pred CCCCCCccccccCCccccCCC
Q 036448 559 EGKGEDWHKISHIPHIKWSPL 579 (580)
Q Consensus 559 ~~~~~~~~~i~~ip~~~~~~l 579 (580)
+ ....|+|+++++.+
T Consensus 445 ~------~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 445 S------RFATHLPNIKVHAY 459 (483)
T ss_pred H------HHHhhCccceehhh
Confidence 2 12478888887654
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=4.6e-09 Score=103.15 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=105.2
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeec
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVG 313 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~ 313 (580)
.||+.|. ..++|..++.+..|+.+.|+.|. +..+|..++++..|.+||++.| .+..+|..+..|+ |+.|- ..
T Consensus 80 aDlsrNR--~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli---~s 151 (722)
T KOG0532|consen 80 ADLSRNR--FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI---VS 151 (722)
T ss_pred hhccccc--cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE---Ee
Confidence 4555555 88999999999999999999877 8889999999999999999988 6777887776654 33332 11
Q ss_pred CccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcC
Q 036448 314 GGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKAL 393 (580)
Q Consensus 314 ~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (580)
++. ...+++.+
T Consensus 152 NNk---------------------------------------------------------------------l~~lp~~i 162 (722)
T KOG0532|consen 152 NNK---------------------------------------------------------------------LTSLPEEI 162 (722)
T ss_pred cCc---------------------------------------------------------------------cccCCccc
Confidence 111 01112222
Q ss_pred CCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCccccceecccccCceEeCccc
Q 036448 394 QLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLVIIHLKSVKRVGNEF 462 (580)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~L~~L~l~~~~~l~~~~~~~ 462 (580)
+....|..|+.+.|.+..+|+-++.+.+|+.|.+..|......+.++.|||..|+++ |+++.+++..|
T Consensus 163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfS-cNkis~iPv~f 230 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFS-CNKISYLPVDF 230 (722)
T ss_pred ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecc-cCceeecchhh
Confidence 334455556666667777888888888888888888765555556777888888887 45566665543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=8.8e-08 Score=97.22 Aligned_cols=189 Identities=24% Similarity=0.276 Sum_probs=131.0
Q ss_pred EEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCC-CccEEeccCCccccccch
Q 036448 194 LGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELY-NLQKLDIRRCRNLKELPA 272 (580)
Q Consensus 194 L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~ 272 (580)
+....+.+...+..+..++.+..|.+.++. +..+|..++.+. +|+.|++++|. +..+|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-------------------i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~ 157 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN-------------------ITDIPPLIGLLKSNLKELDLSDNK-IESLPS 157 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc-------------------cccCccccccchhhcccccccccc-hhhhhh
Confidence 445555443334444445566666666554 888888888885 99999999988 888887
Q ss_pred hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHh
Q 036448 273 GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVER 352 (580)
Q Consensus 273 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~ 352 (580)
.++.+++|+.|++++| .+..+|...+.+++|+.|++.. +. +..+...
T Consensus 158 ~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~--N~--------i~~l~~~---------------------- 204 (394)
T COG4886 158 PLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG--NK--------ISDLPPE---------------------- 204 (394)
T ss_pred hhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC--Cc--------cccCchh----------------------
Confidence 7999999999999999 6788888777888888887321 11 1111100
Q ss_pred cccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCC
Q 036448 353 LQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVK 432 (580)
Q Consensus 353 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 432 (580)
.....+|+.+.+..|. ....+..+....++..+.+.++....+|..+..+++|+.|++++| .
T Consensus 205 --~~~~~~L~~l~~~~N~---------------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~ 266 (394)
T COG4886 205 --IELLSALEELDLSNNS---------------IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-Q 266 (394)
T ss_pred --hhhhhhhhhhhhcCCc---------------ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-c
Confidence 0112335555555552 123344556667778888888888777889999999999999998 5
Q ss_pred CCCCCCCCCcc-ccceeccccc
Q 036448 433 CEHLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 433 l~~l~~l~~l~-L~~L~l~~~~ 453 (580)
+..++.++.+. ++.|++++..
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccccccCccCEEeccCcc
Confidence 66677688888 9999998744
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=2.8e-07 Score=83.68 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 254 YNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 254 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
..|+.|||++|. +..+-.++.-+++++.|+++.| .+..+.. +..|.+|+.||+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDL 336 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDL 336 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeec
Confidence 446666666665 6666666666666666666666 3333222 555666666653
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=1.4e-07 Score=81.81 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCcccEEEeccCCcccccccceeeecccccccccccchhhc-cCCCccEEeccCCccccccchhhhcccCCCeEEcCCC
Q 036448 210 GLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLC-ELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 210 ~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
+..++|.|++.+|. |..+. .++ .+.+|+.|++++|. +..++. +..+++|++|++++|
T Consensus 17 n~~~~~~L~L~~n~-------------------I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-------------------ISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS
T ss_pred cccccccccccccc-------------------ccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCC
Confidence 44567888887775 66553 355 58899999999998 888874 889999999999999
Q ss_pred CCCccCcccC-CCCCCCCcCCc
Q 036448 289 DSLKYMPVGI-SKLTSLRTLDK 309 (580)
Q Consensus 289 ~~~~~lp~~i-~~L~~L~~L~~ 309 (580)
.+..++.++ ..+++|++|++
T Consensus 75 -~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 75 -RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----S-CHHHHHH-TT--EEE-
T ss_pred -CCCccccchHHhCCcCCEEEC
Confidence 667776555 35888888874
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.4e-08 Score=91.85 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=97.4
Q ss_pred CccEEeccCCccc-cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcC
Q 036448 255 NLQKLDIRRCRNL-KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLV 333 (580)
Q Consensus 255 ~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 333 (580)
.||+|||++.... ..+..-++.+.+|+.|.+.|...-..+...|.+=.+|+.|++..++.-+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t----------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT----------------- 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-----------------
Confidence 4888888876522 2344445678888888888774433444445566666666654333221
Q ss_pred CceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhc-CCCCCCCcEEEEeecCCCCC
Q 036448 334 RECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKA-LQLPLSVEKLGIILYGGNIF 412 (580)
Q Consensus 334 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l 412 (580)
.......+.+|+.|..|+++||..+.. .+--. -..-++|+.|+++||.-.-.
T Consensus 249 --------------~n~~~ll~~scs~L~~LNlsWc~l~~~-------------~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 249 --------------ENALQLLLSSCSRLDELNLSWCFLFTE-------------KVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred --------------hhHHHHHHHhhhhHhhcCchHhhccch-------------hhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 112233456777888888888863211 11111 12236788888888765322
Q ss_pred ----CcchhcccCCcEEEEcCCCCCCC--CCCCCCcc-ccceecccccCc
Q 036448 413 ----PKWLTSLTNLRNLYLRSCVKCEH--LPPLGKLP-LEKLVIIHLKSV 455 (580)
Q Consensus 413 ----p~~l~~l~~L~~L~L~~~~~l~~--l~~l~~l~-L~~L~l~~~~~l 455 (580)
..-...+++|..|||++|..++. +..+.+++ |++|.++.|..+
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 22233789999999999987763 33467889 999999999855
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1.2e-06 Score=62.01 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=45.2
Q ss_pred CcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCccccccch-hhhcccCCCeEEcCCCC
Q 036448 212 DRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETD 289 (580)
Q Consensus 212 ~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 289 (580)
++|++|++++|+ +..+|. .+..+++|++|++++|. +..+|+ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-------------------l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-------------------LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-------------------ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-------------------CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777776665 788885 47889999999999888 777764 56889999999998883
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3e-06 Score=82.74 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=51.8
Q ss_pred ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCC
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 287 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 287 (580)
+..+.+++.|++++|. ++.+|. --.+|+.|.+++|..+..+|..+ .++|++|++++
T Consensus 48 ~~~~~~l~~L~Is~c~-------------------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~ 103 (426)
T PRK15386 48 IEEARASGRLYIKDCD-------------------IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH 103 (426)
T ss_pred HHHhcCCCEEEeCCCC-------------------CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccC
Confidence 4456778888888774 777772 12369999999999888888755 36899999999
Q ss_pred CCCCccCcccCCC
Q 036448 288 TDSLKYMPVGISK 300 (580)
Q Consensus 288 ~~~~~~lp~~i~~ 300 (580)
|..+..+|..+..
T Consensus 104 Cs~L~sLP~sLe~ 116 (426)
T PRK15386 104 CPEISGLPESVRS 116 (426)
T ss_pred cccccccccccce
Confidence 9777777765433
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.8e-06 Score=91.99 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCc-CcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 191 VRHLGLNFQRGTS-FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 191 ~~~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
++.|+++++.+.. +|..+..+++|+.|++++|.. -..+|..++.+++|++|+|++|.....
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l------------------~g~iP~~~~~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI------------------RGNIPPSLGSITSLEVLDLSYNSFNGS 481 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcc------------------cCcCChHHhCCCCCCEEECCCCCCCCC
Confidence 5566666666543 566666666666666666542 235666666666777777776664456
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCC
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISK 300 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~ 300 (580)
+|..++++++|++|++++|.....+|..++.
T Consensus 482 iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 6666666777777777666555566665543
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=1.6e-07 Score=89.23 Aligned_cols=265 Identities=18% Similarity=0.173 Sum_probs=148.1
Q ss_pred CCccEEeccCCccccc--cchhhhcccCCCeEEcCCCCCCccCc--ccCCCCCCCCcCCceeecCccCCCCccChhhh-h
Q 036448 254 YNLQKLDIRRCRNLKE--LPAGIGKLKNMRSLLNGETDSLKYMP--VGISKLTSLRTLDKFVVGGGVDGSNTCRLESL-K 328 (580)
Q Consensus 254 ~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L-~ 328 (580)
..|+.|.+++|..... +-.....++++++|.+.+|..++.-- .--..+.+|++|++..+...+ ...+..+ .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT----~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT----DVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH----HHHHHHHHH
Confidence 4588899999985532 22344678999999999996443211 112356777777754433322 1122211 2
Q ss_pred cCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecC
Q 036448 329 NLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYG 408 (580)
Q Consensus 329 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 408 (580)
..++|..+++++++.+.. ........++..++.+...+|. ....+.+...-....-+..+++..|.
T Consensus 214 gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~------------e~~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCL------------ELELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred hhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccc------------cccHHHHHHHhccChHhhccchhhhc
Confidence 334444455555544433 1111223344444444444332 00111111111223334445544553
Q ss_pred CCCCCc-chh--cccCCcEEEEcCCCCCCCCC--CCC-Ccc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCc
Q 036448 409 GNIFPK-WLT--SLTNLRNLYLRSCVKCEHLP--PLG-KLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPS 481 (580)
Q Consensus 409 ~~~lp~-~l~--~l~~L~~L~L~~~~~l~~l~--~l~-~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (580)
..+--. |.. .+..|+.|+.++|....+.+ .++ .-+ |+.|.+..|..+...+-...+
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------------- 342 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------------- 342 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----------------
Confidence 322111 111 57788999999887765433 232 335 899999988875544433222
Q ss_pred cccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCC-----CcCCCCCCCcceEEEecCcchHHH
Q 036448 482 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL-----PDYLLQTTTLQDLTIWKCALLENR 556 (580)
Q Consensus 482 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-----p~~~~~l~~L~~L~i~~c~~l~~~ 556 (580)
.+.+.|+.+++..|....+-.. ..--...|.|+.|.++.|..++.- -..-.....|..+.+++||.+.+.
T Consensus 343 -rn~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 343 -RNCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred -cCChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 3788999998888765443321 111236899999999999876654 334456788999999999998876
Q ss_pred hc
Q 036448 557 YR 558 (580)
Q Consensus 557 ~~ 558 (580)
--
T Consensus 418 ~L 419 (483)
T KOG4341|consen 418 TL 419 (483)
T ss_pred HH
Confidence 43
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=5.2e-07 Score=81.93 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc-----eeeecccccccccccchhhccCCCccEEecc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS-----ILSSFSSSKECIERLPKTLCELYNLQKLDIR 262 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~-----~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~ 262 (580)
|+.++.+++++|.+..+-.+..-++.+|.|++++|++..+..-. ..||||+|. +.++--.--+|-|.++|.|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~--Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL--LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch--hHhhhhhHhhhcCEeeeehh
Confidence 67788899999999888888888899999999999754443211 226777776 66665555566677777777
Q ss_pred CCccccccchhhhcccCCCeEEcCCCCCCccCc--ccCCCCCCCCcCCc
Q 036448 263 RCRNLKELPAGIGKLKNMRSLLNGETDSLKYMP--VGISKLTSLRTLDK 309 (580)
Q Consensus 263 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~ 309 (580)
+|. +..+. ++++|-+|..||+++| .+..+. .+||+|+.|++|.+
T Consensus 361 ~N~-iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 361 QNK-IETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhh-Hhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhh
Confidence 765 55443 4677777777777777 344332 34677777776653
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.6e-06 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccC
Q 036448 254 YNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYM 294 (580)
Q Consensus 254 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l 294 (580)
++|++|++++|. +..+|+.+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 478999999998 8889988999999999999999 45444
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6e-07 Score=85.84 Aligned_cols=108 Identities=18% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCceEEEEEEecCCCcCcc--cccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSFPM--SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
.+++|.+++.+......+. -...|+++|.|+++.|-.-. +..+-.-...|++|+.|+|+.|.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n----------------w~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN----------------WFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh----------------HHHHHHHHHhcccchhccccccc
Confidence 5788999999888776553 56778999999998872111 22333335678899999999887
Q ss_pred cccccchh--hhcccCCCeEEcCCCCCCc-cCcccCCCCCCCCcCCceee
Q 036448 266 NLKELPAG--IGKLKNMRSLLNGETDSLK-YMPVGISKLTSLRTLDKFVV 312 (580)
Q Consensus 266 ~l~~lp~~--i~~l~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~~~~~ 312 (580)
+...-.+ -..+++|+.|.+++|.... .+-.-...+++|+.|.+...
T Consensus 184 -l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 184 -LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred -ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 4332221 2357889999999994321 11122456778888875433
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=9.5e-06 Score=57.41 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=50.7
Q ss_pred CceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCc
Q 036448 189 DKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCR 265 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 265 (580)
++++.|++.+|.+..+|. .+..+++|++|++++|+ +..+|. .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-------------------l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-------------------LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-------------------ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-------------------cCccCHHHHcCCCCCCEEeCcCCc
Confidence 367899999999999875 67899999999999887 777775 58999999999999986
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.7e-05 Score=51.27 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=33.4
Q ss_pred CcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccch
Q 036448 212 DRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPA 272 (580)
Q Consensus 212 ~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 272 (580)
++|++|++++|+ |+.+|..+++|++|++|++++|. +.++|.
T Consensus 1 ~~L~~L~l~~N~-------------------i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-------------------ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--------------------SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC-------------------CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 467888887776 89999999999999999999998 777664
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.84 E-value=2.3e-05 Score=83.67 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=66.2
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
|+|+++.. -..+|..++++++|++|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++.
T Consensus 423 L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 423 LGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 77777772 34789999999999999999998556899999999999999999997667899999999999999854
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=5.2e-05 Score=74.29 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc--ccceecccccCceEe
Q 036448 397 LSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP--LEKLVIIHLKSVKRV 458 (580)
Q Consensus 397 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~--L~~L~l~~~~~l~~~ 458 (580)
.+++.|++++|....+|. -..+|+.|.+++|..++.+|. .+| |+.|.+++|..+..+
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCccccccc
Confidence 555555555555555551 123456666665555555543 223 566666555444433
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=3.6e-06 Score=85.61 Aligned_cols=33 Identities=27% Similarity=0.109 Sum_probs=23.4
Q ss_pred CcEEEEeecCCCCCCcchhcccCCcEEEEcCCC
Q 036448 399 VEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 431 (580)
Q Consensus 399 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~ 431 (580)
|+.+++.++....++..+..+.++..|++.++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcc
Confidence 677777777776665566677777778777663
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.75 E-value=1.8e-05 Score=73.85 Aligned_cols=238 Identities=17% Similarity=0.056 Sum_probs=139.0
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-------hccCCC
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-------LCELYN 255 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-------i~~L~~ 255 (580)
.+.++.+++++|.+.. +-..+.+.+.||.-++++-- +.....++|+. +-..++
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f---------------tGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF---------------TGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh---------------cCCcHHHHHHHHHHHHHHHhcCCc
Confidence 5778899999998764 44456667778877776530 00004455544 345668
Q ss_pred ccEEeccCCccccccc----hhhhcccCCCeEEcCCCCCCcc-------------CcccCCCCCCCCcCCceeecCccCC
Q 036448 256 LQKLDIRRCRNLKELP----AGIGKLKNMRSLLNGETDSLKY-------------MPVGISKLTSLRTLDKFVVGGGVDG 318 (580)
Q Consensus 256 L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~l~~~~~~~~-------------lp~~i~~L~~L~~L~~~~~~~~~~~ 318 (580)
|++||||+|-.-..-+ .-|.+++.|++|++.+|..-.. .-..++.-++|+++. ++++...
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i---~~rNrle 170 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI---CGRNRLE 170 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE---eeccccc
Confidence 9999999987333333 3356789999999999943211 111234445566554 4444322
Q ss_pred CCcc--ChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCC
Q 036448 319 SNTC--RLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLP 396 (580)
Q Consensus 319 ~~~~--~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (580)
..+. .-..++..+.|....+..-.-...-..+....+..|++|+.|++..|.+. ......+...++..
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft----------~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT----------LEGSVALAKALSSW 240 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh----------hHHHHHHHHHhccc
Confidence 2221 11223444455554444321111112344556778889999998877522 11334556667777
Q ss_pred CCCcEEEEeecCCCC-----CCcchh-cccCCcEEEEcCCCCCCC-----CCCCCCcc-ccceeccccc
Q 036448 397 LSVEKLGIILYGGNI-----FPKWLT-SLTNLRNLYLRSCVKCEH-----LPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 397 ~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~L~~~~~l~~-----l~~l~~l~-L~~L~l~~~~ 453 (580)
++|+.|++.+|.... +-..+. ..++|+.|.+.+|..... .-.+...| |+.|.+..|.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 788888888887643 111222 578889999888854321 11245577 8888888754
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-06 Score=78.50 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=97.7
Q ss_pred cccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCC---CCcchhcccCCcEEEEcCCC
Q 036448 355 LYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNI---FPKWLTSLTNLRNLYLRSCV 431 (580)
Q Consensus 355 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~~~ 431 (580)
+..|.+|+.|.+.++. .++.+...+..-.+|+.|+++.+.+.+ +.--+.+++.|..|+|+.|.
T Consensus 206 Ls~C~kLk~lSlEg~~--------------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR--------------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHhhhhccccccc--------------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3445555555555554 334445555666777888887776632 12234478888888888885
Q ss_pred CCCCCCC--CCCc-c-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccc
Q 036448 432 KCEHLPP--LGKL-P-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRIT 507 (580)
Q Consensus 432 ~l~~l~~--l~~l-~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 507 (580)
..+..-. .... + |+.|++++|...-.... . ..-...+|+|..|+++++..++.-..
T Consensus 272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-~----------------~tL~~rcp~l~~LDLSD~v~l~~~~~--- 331 (419)
T KOG2120|consen 272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-L----------------STLVRRCPNLVHLDLSDSVMLKNDCF--- 331 (419)
T ss_pred ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-H----------------HHHHHhCCceeeeccccccccCchHH---
Confidence 5442211 1222 3 77777777642211110 0 00124689999999999887775222
Q ss_pred cccccCCCCccceeeeccCCCCCCCCc---CCCCCCCcceEEEecCc
Q 036448 508 RKENISIMPRLSSLEVRSCNKLKALPD---YLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 508 ~~~~~~~l~~L~~L~l~~c~~L~~lp~---~~~~l~~L~~L~i~~c~ 551 (580)
..+-.|+.|++|.++.|..+ +|. .+...|+|.+|++.+|-
T Consensus 332 --~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 --QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred --HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 24557899999999999853 333 34568899999999884
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.55 E-value=1.5e-05 Score=74.45 Aligned_cols=200 Identities=17% Similarity=0.128 Sum_probs=122.6
Q ss_pred ccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccch-------------
Q 036448 206 MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPA------------- 272 (580)
Q Consensus 206 ~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~------------- 272 (580)
..+..+++|++|++++|-. .-.. +..+-.-+.+...|++|.|.+|. +...-.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~------------G~~g--~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~ 150 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAF------------GPKG--IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVN 150 (382)
T ss_pred HHHhcCCceeEeecccccc------------Cccc--hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHH
Confidence 3456677899999988832 0111 33344446678889999999887 542211
Q ss_pred -hhhcccCCCeEEcCCCCCCccCcc-----cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 273 -GIGKLKNMRSLLNGETDSLKYMPV-----GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 273 -~i~~l~~L~~L~l~~~~~~~~lp~-----~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
-+++-++||++..++| .+..-+. .+...+.|+.+.+...+....+. ......+...++|+.|++.+-.-...
T Consensus 151 kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred hccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhH
Confidence 1234478899988888 4443332 24555677776644333332111 22345677788888888775211111
Q ss_pred hhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcC-CCCCCCcEEEEeecCCCC-----CCcchhccc
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKAL-QLPLSVEKLGIILYGGNI-----FPKWLTSLT 420 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~-----lp~~l~~l~ 420 (580)
........+..+++|+.|+++.|.+.+.. ...+...+ ...++|+.|.+.+|.++. +-..+...+
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~G----------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEG----------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred HHHHHHHHhcccchheeeccccccccccc----------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 12223334667789999999998754332 23334443 347899999999998743 233344689
Q ss_pred CCcEEEEcCCCC
Q 036448 421 NLRNLYLRSCVK 432 (580)
Q Consensus 421 ~L~~L~L~~~~~ 432 (580)
.|+.|+|++|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 999999999965
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=6.3e-05 Score=80.18 Aligned_cols=113 Identities=22% Similarity=0.053 Sum_probs=70.5
Q ss_pred cCCCccEEeccCCccc-cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcC
Q 036448 252 ELYNLQKLDIRRCRNL-KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNL 330 (580)
Q Consensus 252 ~L~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 330 (580)
.||.|+.|.+++-... .++-.-..++++|+.||++++ .+..+ .++++|++|++|.+....... ...+..|-+|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~----~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFES----YQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCc----hhhHHHHhcc
Confidence 5788888888874421 233344456888999999988 55555 678888888888765433332 3456677778
Q ss_pred CcCCceeEeCCCCCCChh--HHHhcccccccccceeEEEeec
Q 036448 331 QLVRECGIEGLGNVLYLD--EVERLQLYNQQNLLRLRLEFGR 370 (580)
Q Consensus 331 ~~L~~l~i~~~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~ 370 (580)
++|+.|+++.-....... ..-...-..+++|+.|+.++..
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888888777644332221 1111122336677777776554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.30 E-value=1.4e-05 Score=81.42 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=43.3
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcc
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPV 296 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 296 (580)
.+.++|. +..+..++.-++.|+.|||++|+ +..+- .+..|++|++||++.| .+..+|.
T Consensus 169 a~fsyN~--L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~ 226 (1096)
T KOG1859|consen 169 ASFSYNR--LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQ 226 (1096)
T ss_pred hhcchhh--HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccc
Confidence 5666777 77777777778888888888887 66555 4778888888888887 5665554
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.22 E-value=8.6e-05 Score=75.61 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
...+..+++..|.+..+...+..+++|++|++++|. |+.+.. +..+..|+.|++++|. +
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-------------------I~~i~~-l~~l~~L~~L~l~~N~-i 152 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-------------------ITKLEG-LSTLTLLKELNLSGNL-I 152 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc-------------------cccccc-hhhccchhhheeccCc-c
Confidence 567788888888888766657778888888888886 444432 4556667777777776 5
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCc
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDK 309 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~ 309 (580)
..++. +..+++|+.+++++| .+..+... ...+.+|+.+.+
T Consensus 153 ~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 153 SDISG-LESLKSLKLLDLSYN-RIVDIENDELSELISLEELDL 193 (414)
T ss_pred hhccC-CccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhc
Confidence 55554 555777777777777 33333332 355666666653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=0.00012 Score=59.07 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCceEEEEEEecCCCcCccccc-CCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIR-GLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
...+...++++|.+.++|..+. +++.+.+|++.+|. +..+|..+..++.|+.|+++.|.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-------------------isdvPeE~Aam~aLr~lNl~~N~- 111 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-------------------ISDVPEELAAMPALRSLNLRFNP- 111 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-------------------hhhchHHHhhhHHhhhcccccCc-
Confidence 3567778999999988887764 44578888777775 88899999999999999999988
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCccCccc
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLKYMPVG 297 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 297 (580)
+...|..|..|.+|-.|+..++ ....+|..
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 8888888888999999998887 44455543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.80 E-value=0.00013 Score=58.93 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=74.1
Q ss_pred ceEEEEEEecCCCcCcccc---cCCCcccEEEeccCCcccccccceeeecccccccccccchhhc-cCCCccEEeccCCc
Q 036448 190 KVRHLGLNFQRGTSFPMSI---RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLC-ELYNLQKLDIRRCR 265 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~---~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~-~L~~L~~L~L~~~~ 265 (580)
....++++.+++..++... ....+|...++++|. +..+|+.+. +.+.+++|++++|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-------------------fk~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-------------------FKKFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-------------------hhhCCHHHhhccchhhhhhcchhh
Confidence 3445667777665555444 344455555666654 888888865 45689999999998
Q ss_pred cccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 266 NLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 266 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
+..+|.++..++.|+.|+++.| .+...|.-|..|.+|-.|+
T Consensus 89 -isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 89 -ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred -hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 9999999999999999999999 5677788787788887777
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.75 E-value=3.8e-05 Score=78.47 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc----ee-eecccccccccccchh-hccCCCccEEe
Q 036448 187 FGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS----IL-SSFSSSKECIERLPKT-LCELYNLQKLD 260 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~----~~-L~l~~~~~~i~~lp~~-i~~L~~L~~L~ 260 (580)
.|.++...+.++|.+..+-.++.-++.|++|++++|++-+...-. +. |||++|. +..+|.- .... +|+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~--L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC--LRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccch--hccccccchhhh-hheeee
Confidence 477888888888888877777888889999999988643332110 00 5555555 5555532 1111 255555
Q ss_pred ccCCccccccchhhhcccCCCeEEcCCC
Q 036448 261 IRRCRNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 261 L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
+++|. ++.+- +|.+|.+|+.||++.|
T Consensus 239 lrnN~-l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 239 LRNNA-LTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred ecccH-HHhhh-hHHhhhhhhccchhHh
Confidence 55555 44443 2555555555555555
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.00034 Score=73.27 Aligned_cols=113 Identities=19% Similarity=0.096 Sum_probs=64.9
Q ss_pred cCCCccEEeccCCccccc--cchhhhcccCCCeEEcCCC-CCCccCc----ccCCCCCCCCcCCceeecCccCCCCccCh
Q 036448 252 ELYNLQKLDIRRCRNLKE--LPAGIGKLKNMRSLLNGET-DSLKYMP----VGISKLTSLRTLDKFVVGGGVDGSNTCRL 324 (580)
Q Consensus 252 ~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~lp----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l 324 (580)
..++|+.|.+.+|..+.. +-+....+++|+.|++++| ......+ .....+.+|+.|++..+.... ...+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence 478899999998876765 4355677899999999873 2222222 123445777777766554322 2334
Q ss_pred hhhhc-CCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeec
Q 036448 325 ESLKN-LQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGR 370 (580)
Q Consensus 325 ~~L~~-L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 370 (580)
..+.. ...|+.+.+..+..+.. .........+++|+.|+++++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHHhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCc
Confidence 33332 44555555444443221 2222234456667777777665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.71 E-value=0.0012 Score=70.74 Aligned_cols=140 Identities=21% Similarity=0.164 Sum_probs=91.2
Q ss_pred cCCCccEEeccCCccc-cccchhhhc-ccCCCeEEcCCCCCC-ccCcccCCCCCCCCcCCceeecCccCCCCccChhhhh
Q 036448 252 ELYNLQKLDIRRCRNL-KELPAGIGK-LKNMRSLLNGETDSL-KYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLK 328 (580)
Q Consensus 252 ~L~~L~~L~L~~~~~l-~~lp~~i~~-l~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 328 (580)
.-.+|++||+++...+ ..-|..++. ||.|+.|.+.+-... ..+-.-..++++|..||++..+.. .+..++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-------nl~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-------NLSGIS 192 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-------CcHHHh
Confidence 3468999999996643 344556766 899999999885221 122233567899999997655443 356677
Q ss_pred cCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecC
Q 036448 329 NLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYG 408 (580)
Q Consensus 329 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 408 (580)
+|++|+.|.+.+++-.. ...-..+.++++|+.||++........ .......+.-..+|+|+.|+.++..
T Consensus 193 ~LknLq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~--------~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDT--------KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccccHHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccch--------HHHHHHHHhcccCccccEEecCCcc
Confidence 77777777776654322 112234667899999999976522111 1334455556667889999888765
Q ss_pred C
Q 036448 409 G 409 (580)
Q Consensus 409 ~ 409 (580)
.
T Consensus 262 i 262 (699)
T KOG3665|consen 262 I 262 (699)
T ss_pred h
Confidence 5
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00072 Score=62.02 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=29.9
Q ss_pred hcCCCCCCCcEEEEeecCCCCC--CcchhcccCCcEEEEcCCCCCCCCC
Q 036448 391 KALQLPLSVEKLGIILYGGNIF--PKWLTSLTNLRNLYLRSCVKCEHLP 437 (580)
Q Consensus 391 ~~l~~~~~L~~L~l~~~~~~~l--p~~l~~l~~L~~L~L~~~~~l~~l~ 437 (580)
.+..+++.+..|.+..+.+... -..+..++.|..|.+++++.+..+.
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 3455666666777766665332 1234478888888888887666543
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.27 E-value=0.002 Score=34.51 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=14.2
Q ss_pred CccEEeccCCccccccchhhhc
Q 036448 255 NLQKLDIRRCRNLKELPAGIGK 276 (580)
Q Consensus 255 ~L~~L~L~~~~~l~~lp~~i~~ 276 (580)
+|++||+++|. ++.+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777775 6677776554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.21 E-value=0.0046 Score=53.70 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=47.4
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhc-ccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCC
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGK-LKNMRSLLNGETDSLKYMPV--GISKLTSLRTLD 308 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~ 308 (580)
+||+.+. +..++. +..+..|.+|.+.+|. +..+-+.+.. +++|..|.+.+| .+..+-. .+..+++|++|.
T Consensus 47 iDLtdNd--l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 47 IDLTDND--LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ecccccc--hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4555555 666654 6778889999999888 7777766766 678999999988 4444322 244555555555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.06 E-value=0.0077 Score=52.36 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=66.3
Q ss_pred HHHhhcCCCCCCCcEEEEeecCCCCCCcchh-cccCCcEEEEcCCCC--CCCCCCCCCcc-ccceecccccCceEeCccc
Q 036448 387 EQLLKALQLPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVK--CEHLPPLGKLP-LEKLVIIHLKSVKRVGNEF 462 (580)
Q Consensus 387 ~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~--l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~ 462 (580)
....+.+..++.|..|.+.+|.+..+-+.+. .+++|..|.|.+|.. +.++.++..+| |++|.+.+.+--+.-.-..
T Consensus 54 l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 54 LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence 3445677888999999999999988866665 678899999999864 34777888889 9999887644221111111
Q ss_pred cCCCCCCCCCCCCCCCCCccccCccccccccccc
Q 036448 463 LGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAM 496 (580)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 496 (580)
+ -+..+|+|+.|++..-
T Consensus 134 y-----------------vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 134 Y-----------------VLYKLPSLRTLDFQKV 150 (233)
T ss_pred E-----------------EEEecCcceEeehhhh
Confidence 0 1347888888888663
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.03 E-value=0.0058 Score=55.56 Aligned_cols=238 Identities=19% Similarity=0.114 Sum_probs=121.4
Q ss_pred cchhhccCCCccEEeccCCc---cccccc-------hhhhcccCCCeEEcCCCCCCccCccc----CCCCCCCCcCCcee
Q 036448 246 LPKTLCELYNLQKLDIRRCR---NLKELP-------AGIGKLKNMRSLLNGETDSLKYMPVG----ISKLTSLRTLDKFV 311 (580)
Q Consensus 246 lp~~i~~L~~L~~L~L~~~~---~l~~lp-------~~i~~l~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~ 311 (580)
+...|.+-.+|++.++++-. ...++| +.+-+|++|+..+++.|..-...|.. |++-+.|.+|.+..
T Consensus 50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 34445666777777776532 012233 33567788888888887554455543 56667777776544
Q ss_pred ecCccCCCCccChh-hhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHh
Q 036448 312 VGGGVDGSNTCRLE-SLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLL 390 (580)
Q Consensus 312 ~~~~~~~~~~~~l~-~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (580)
++... .....++ .|.+|-. .....+.+.|+......|++.+... ....
T Consensus 130 nGlGp--~aG~rigkal~~la~-------------------nKKaa~kp~Le~vicgrNRlengs~----------~~~a 178 (388)
T COG5238 130 NGLGP--IAGGRIGKALFHLAY-------------------NKKAADKPKLEVVICGRNRLENGSK----------ELSA 178 (388)
T ss_pred CCCCc--cchhHHHHHHHHHHH-------------------HhhhccCCCceEEEeccchhccCcH----------HHHH
Confidence 33322 1111111 1111111 1123455777777777666433321 2233
Q ss_pred hcCCCCCCCcEEEEeecCCCCCCc--------chhcccCCcEEEEcCCCCCCCC-----CCCCCcc-ccceecccccCce
Q 036448 391 KALQLPLSVEKLGIILYGGNIFPK--------WLTSLTNLRNLYLRSCVKCEHL-----PPLGKLP-LEKLVIIHLKSVK 456 (580)
Q Consensus 391 ~~l~~~~~L~~L~l~~~~~~~lp~--------~l~~l~~L~~L~L~~~~~l~~l-----~~l~~l~-L~~L~l~~~~~l~ 456 (580)
..+....+|+.+.+..|.+. |. .+..+.+|+.|+|.+|.....- ..+..++ |+.|.+.+|- +.
T Consensus 179 ~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls 255 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LS 255 (388)
T ss_pred HHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hc
Confidence 34445567888888877663 23 2236788999999887543210 1145567 7888888774 11
Q ss_pred EeC-ccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccccccccc-ccccCCCCccceeeeccCCCCCCC
Q 036448 457 RVG-NEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITR-KENISIMPRLSSLEVRSCNKLKAL 532 (580)
Q Consensus 457 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~L~~l 532 (580)
.-+ ..+... ..-..+|+|..|...+...=......... .-.-.++|-|..|.+.+|. +...
T Consensus 256 ~~G~~~v~~~--------------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~ 318 (388)
T COG5238 256 NEGVKSVLRR--------------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKEL 318 (388)
T ss_pred cccHHHHHHH--------------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhH
Confidence 111 011000 00124677777766553221111110000 0012467888888888765 5443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.02 E-value=0.0059 Score=55.52 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCcccccccceeeecccccccccccc-------hhhccCCC
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-------KTLCELYN 255 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-------~~i~~L~~ 255 (580)
.+.+..+++++|.+.. +...+.+-.+|+..++++-- +.....++| +.+-++++
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f---------------tgr~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF---------------TGRDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh---------------hcccHHHHHHHHHHHHHHHhcCCc
Confidence 5677889999998765 34445666777777666530 000023333 34568899
Q ss_pred ccEEeccCCccccccchh----hhcccCCCeEEcCCCC
Q 036448 256 LQKLDIRRCRNLKELPAG----IGKLKNMRSLLNGETD 289 (580)
Q Consensus 256 L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~l~~~~ 289 (580)
|+..+||+|-.-...|+. |++-+.|.+|.+++|.
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 999999999855566654 4566899999999993
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0039 Score=56.50 Aligned_cols=104 Identities=21% Similarity=0.150 Sum_probs=60.1
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccC--CcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDR--SDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~--~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
...+..+++.+...+.+ ..+..+++|+.|.++.| ++ ...++...-++++|++|++++|+
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~------------------~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRV------------------SGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccc------------------cccceehhhhCCceeEEeecCCc
Confidence 34555555555554431 23445677888888777 43 33444445556788888888876
Q ss_pred ccc---ccchhhhcccCCCeEEcCCCCCCccCcc----cCCCCCCCCcCCceeec
Q 036448 266 NLK---ELPAGIGKLKNMRSLLNGETDSLKYMPV----GISKLTSLRTLDKFVVG 313 (580)
Q Consensus 266 ~l~---~lp~~i~~l~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~~ 313 (580)
+. .+++ +.++.+|..|++.+|.... +-. .+.-+++|.+|+...+.
T Consensus 103 -i~~lstl~p-l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 103 -IKDLSTLRP-LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred -cccccccch-hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 33 3333 5667777788887774322 211 14456677777654443
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0017 Score=59.67 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCccceeeeccCCCCCCCCc--CCCCCCCcceEEEecCcchHHHhcCCCCC-CccccccCCccccC
Q 036448 514 IMPRLSSLEVRSCNKLKALPD--YLLQTTTLQDLTIWKCALLENRYREGKGE-DWHKISHIPHIKWS 577 (580)
Q Consensus 514 ~l~~L~~L~l~~c~~L~~lp~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~~i~~ip~~~~~ 577 (580)
.+|.+-.|+++.++ +.+..+ .+..+++|..|.+.+.|.....- +++ .+.-|+++|++++-
T Consensus 222 ~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~---~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 222 PFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLR---GGERRFLLIARLTKVQVL 284 (418)
T ss_pred CCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCccccccc---CCcceEEEEeeccceEEe
Confidence 45555555555433 443322 33446666667766666544331 122 23344666666543
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0012 Score=57.30 Aligned_cols=69 Identities=17% Similarity=0.404 Sum_probs=56.5
Q ss_pred cccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCC-cCCCCCCCcceEEEecCcchH
Q 036448 482 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALP-DYLLQTTTLQDLTIWKCALLE 554 (580)
Q Consensus 482 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~l~ 554 (580)
+..+++++.|.+.+|..+.+|......+ ..|+|+.|+|++|+.+++-- ..+..+++|+.|.+.+-|.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4578999999999999999998744432 67999999999999988642 356679999999999987554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.51 E-value=0.0021 Score=67.24 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=26.4
Q ss_pred cccCCCeEEcCCCCCCcc--CcccCCCCCCCCcCCcee
Q 036448 276 KLKNMRSLLNGETDSLKY--MPVGISKLTSLRTLDKFV 311 (580)
Q Consensus 276 ~l~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~~ 311 (580)
.+++|+.|.+.+|..+.. +-.....+++|+.|++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 478999999999876665 334466788888888543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0021 Score=58.55 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=53.1
Q ss_pred hccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCCceeecCccCCCCccChhhh
Q 036448 250 LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPV--GISKLTSLRTLDKFVVGGGVDGSNTCRLESL 327 (580)
Q Consensus 250 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 327 (580)
..+|+.|++|.|+-|+ +..+-+ +..|++|++|+|+.| .+..+.. -+.++++|++|.+.....+......-...-|
T Consensus 37 c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 4578889999999887 777765 888999999999888 3443322 2567888888876544444322222222334
Q ss_pred hcCCcCCce
Q 036448 328 KNLQLVREC 336 (580)
Q Consensus 328 ~~L~~L~~l 336 (580)
+.|++|++|
T Consensus 114 R~LPnLkKL 122 (388)
T KOG2123|consen 114 RVLPNLKKL 122 (388)
T ss_pred HHcccchhc
Confidence 444444443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.96 E-value=0.0084 Score=54.42 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=26.6
Q ss_pred hccCCCccEEeccCC--ccccccchhhhcccCCCeEEcCCC
Q 036448 250 LCELYNLQKLDIRRC--RNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 250 i~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
+-.|++|++|.++.| .....++.-..++++|++|++++|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 445777788888777 434555555566678888888777
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.82 E-value=0.018 Score=28.51 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=10.0
Q ss_pred CccceeeeccCCCCCCCC
Q 036448 516 PRLSSLEVRSCNKLKALP 533 (580)
Q Consensus 516 ~~L~~L~l~~c~~L~~lp 533 (580)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888877 77765
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.68 E-value=0.021 Score=28.27 Aligned_cols=16 Identities=50% Similarity=0.829 Sum_probs=7.8
Q ss_pred CccEEeccCCccccccc
Q 036448 255 NLQKLDIRRCRNLKELP 271 (580)
Q Consensus 255 ~L~~L~L~~~~~l~~lp 271 (580)
+|+.|++++|. +.++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 56667777766 55554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.66 E-value=0.015 Score=31.09 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.9
Q ss_pred CCCeEEcCCCCCCccCcccCCCC
Q 036448 279 NMRSLLNGETDSLKYMPVGISKL 301 (580)
Q Consensus 279 ~L~~L~l~~~~~~~~lp~~i~~L 301 (580)
+|++|++++| .++.+|.++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 777999887654
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.004 Score=56.76 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..+++.|+..++.++.+ ....+|+.|.+|.++-|+ |++|-+ +..+++|+.|.|+.|. +
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-------------------IssL~p-l~rCtrLkElYLRkN~-I 75 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-------------------ISSLAP-LQRCTRLKELYLRKNC-I 75 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-------------------cccchh-HHHHHHHHHHHHHhcc-c
Confidence 35667777878777653 234578888888887775 666654 7888999999999887 6
Q ss_pred cccch--hhhcccCCCeEEcCCCCCCccCccc-----CCCCCCCCcCC
Q 036448 268 KELPA--GIGKLKNMRSLLNGETDSLKYMPVG-----ISKLTSLRTLD 308 (580)
Q Consensus 268 ~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~-----i~~L~~L~~L~ 308 (580)
.++-+ .+.++++|+.|.|..|+....-+.. +.-|++|+.||
T Consensus 76 ~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 76 ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55543 4678899999999988766555443 55688888887
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.013 Score=51.04 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCC-CCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccc
Q 036448 421 NLRNLYLRSCVKCE-HLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEE 498 (580)
Q Consensus 421 ~L~~L~L~~~~~l~-~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 498 (580)
.++.++-+++.... .+..+..++ ++.|.+.+|.++...+-+..+ +..|+|+.|++++|++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~------------------~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG------------------GLAPSLQDLDLSGCPR 163 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc------------------ccccchheeeccCCCe
Confidence 34555555543221 333456666 777777777766554433322 2568888888888888
Q ss_pred ccccccccccccccCCCCccceeeeccCCC
Q 036448 499 LEEWNYRITRKENISIMPRLSSLEVRSCNK 528 (580)
Q Consensus 499 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 528 (580)
+++... ..+..+++|+.|.|.+-+.
T Consensus 164 IT~~GL-----~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 164 ITDGGL-----ACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred echhHH-----HHHHHhhhhHHHHhcCchh
Confidence 776543 2456788888888887553
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.35 E-value=0.18 Score=28.09 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=13.9
Q ss_pred CCCccEEeccCCccccccchhh
Q 036448 253 LYNLQKLDIRRCRNLKELPAGI 274 (580)
Q Consensus 253 L~~L~~L~L~~~~~l~~lp~~i 274 (580)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3567777777776 67776654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.35 E-value=0.18 Score=28.09 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=13.9
Q ss_pred CCCccEEeccCCccccccchhh
Q 036448 253 LYNLQKLDIRRCRNLKELPAGI 274 (580)
Q Consensus 253 L~~L~~L~L~~~~~l~~lp~~i 274 (580)
|++|++|+|++|. +..+|.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 3567777777776 67776654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.72 E-value=0.0065 Score=53.93 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=39.4
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCC
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETD 289 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 289 (580)
++++.+. +..+|..++.+..++.+++..|. ....|.+.+++++++++++.++.
T Consensus 70 l~~sknq--~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 70 LDLSKNQ--IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HhccHhh--HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccCc
Confidence 3444444 77888888888888888877765 77788888888888888887774
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.33 E-value=0.022 Score=50.67 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=67.2
Q ss_pred ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCC
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 287 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 287 (580)
+..+.....|+++.|+ +..+-..++.++.|..||++.+. +..+|...+++..++++++..
T Consensus 38 i~~~kr~tvld~~s~r-------------------~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-------------------LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hhccceeeeehhhhhH-------------------HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc
Confidence 4445566666666665 55566668888999999999988 999999999999999999998
Q ss_pred CCCCccCcccCCCCCCCCcCCc
Q 036448 288 TDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 288 ~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
| .....|.+.++++.+++++.
T Consensus 98 n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 98 N-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred c-chhhCCccccccCCcchhhh
Confidence 8 78889999999999999883
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.16 E-value=2.9 Score=47.71 Aligned_cols=125 Identities=16% Similarity=0.231 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcccccc-cccchhHHHh-hhcCCCCcchhhhhhhhcccc
Q 036448 16 PIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVEEI-GQGLLAPLLL-SYNDLPSNSMVKQCFSYCAVF 93 (580)
Q Consensus 16 ~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~~k~~fl~~~~f 93 (580)
+...+|.+.|+|.|+++..++..+....... .... +.+... +..+...+.- -|+.||. +.+..++..|++
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~ 277 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVL 277 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccc
Confidence 4567899999999999999998875542100 0001 111111 1234444443 4789999 889999999998
Q ss_pred CCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEecHHHHHHHHHhh
Q 036448 94 PKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMHDIVHDFAQFVS 167 (580)
Q Consensus 94 ~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~~~~~~i~ 167 (580)
+ .++. .+... +.+.. .+...+++|.+.+++.....+ ++ ..++.|++++++.....
T Consensus 278 ~---~~~~-~l~~~-----l~~~~-------~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 278 R---SMND-ALIVR-----VTGEE-------NGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred c---cCCH-HHHHH-----HcCCC-------cHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 6 2332 22221 11111 146779999999987532211 12 24678999999988764
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.75 E-value=0.67 Score=25.78 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=11.2
Q ss_pred CCcceEEEecCcchHHH
Q 036448 540 TTLQDLTIWKCALLENR 556 (580)
Q Consensus 540 ~~L~~L~i~~c~~l~~~ 556 (580)
++|++|++++|+.++..
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 56777777777766544
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.33 E-value=7 Score=31.91 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=5.7
Q ss_pred hcccCCcEEEEcC
Q 036448 417 TSLTNLRNLYLRS 429 (580)
Q Consensus 417 ~~l~~L~~L~L~~ 429 (580)
..+++|+.+.+.+
T Consensus 32 ~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 32 SNCTSLKSINFPN 44 (129)
T ss_dssp TT-TT-SEEEESS
T ss_pred ccccccccccccc
Confidence 3444555555544
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.53 E-value=1.9 Score=23.92 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=15.6
Q ss_pred CccceeeeccCCCCCCCCcC
Q 036448 516 PRLSSLEVRSCNKLKALPDY 535 (580)
Q Consensus 516 ~~L~~L~l~~c~~L~~lp~~ 535 (580)
++|+.|++++|. |+++|+.
T Consensus 2 ~~L~~L~vs~N~-Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQ-LTSLPEL 20 (26)
T ss_pred cccceeecCCCc-cccCccc
Confidence 578999999866 9999873
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.00 E-value=11 Score=30.76 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=14.7
Q ss_pred hccCCCccEEeccCCccccccchh-hhcccCCCeEEcCC
Q 036448 250 LCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGE 287 (580)
Q Consensus 250 i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~ 287 (580)
+..+.+|+.+.+.+ . +..++.. +..+++|+.+++..
T Consensus 54 F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 54 FSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEETT
T ss_pred eecccccccccccc-c-ccccccccccccccccccccCc
Confidence 44444556666643 1 3333332 33355566555543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.60 E-value=2.3 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=6.6
Q ss_pred CCccEEeccCCc
Q 036448 254 YNLQKLDIRRCR 265 (580)
Q Consensus 254 ~~L~~L~L~~~~ 265 (580)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 456677777666
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.02 E-value=7.2 Score=21.75 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.2
Q ss_pred CCccEEeccCCc
Q 036448 254 YNLQKLDIRRCR 265 (580)
Q Consensus 254 ~~L~~L~L~~~~ 265 (580)
.+|+.|++++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 345555555554
No 87
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=37.77 E-value=68 Score=22.44 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 036448 13 NLEPIGRKIAHKCKGLPLAAKVIGNLLRSKS 43 (580)
Q Consensus 13 ~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~ 43 (580)
.+..+--.|++.|+|++=-+-++-+.|++|.
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkT 32 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRKT 32 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Confidence 4566778899999999999999999999985
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.46 E-value=25 Score=19.84 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=7.9
Q ss_pred CCccEEeccCCc
Q 036448 254 YNLQKLDIRRCR 265 (580)
Q Consensus 254 ~~L~~L~L~~~~ 265 (580)
++|++|||++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356677777665
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=29.37 E-value=1.3 Score=45.72 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHhhcCCCC-CCCcEEEEeecCCCC-----CCcchhcccCCcEEEEcCCCC
Q 036448 388 QLLKALQLP-LSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCVK 432 (580)
Q Consensus 388 ~~~~~l~~~-~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~ 432 (580)
.....+..+ ..++.+++..|.+.. +...+..++.++.|.+++|..
T Consensus 252 ~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 252 KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 344445444 667777777777643 233444667788888877754
No 90
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=27.23 E-value=63 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCc
Q 036448 94 PKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFF 139 (580)
Q Consensus 94 ~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll 139 (580)
+.+-.++..-|.++|.+.+++.+.+ +..|++++=+
T Consensus 3 ~~~~~~d~~pL~~Yy~~h~~L~E~D-----------L~~L~~kS~m 37 (56)
T PF11569_consen 3 ASGKPVDIQPLEDYYLKHKQLQEED-----------LDELCDKSRM 37 (56)
T ss_dssp --------HHHHHHHHHT----TTH-----------HHHHHHHTT-
T ss_pred CCCCCcchHHHHHHHHHcCCccHhh-----------HHHHHHHHCC
Confidence 3455677788999999999988765 7777776543
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=25.59 E-value=56 Score=32.03 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcccc-cccccchhHHHhhhcCCCCcchhhhhhh-hcccc
Q 036448 16 PIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVE-EIGQGLLAPLLLSYNDLPSNSMVKQCFS-YCAVF 93 (580)
Q Consensus 16 ~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~~~k~~fl-~~~~f 93 (580)
+....|++.|+|.|=.+..+...+ ..|..+.... ... ..-......+...|..|+. ..+..+. ....|
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~ 272 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--VITKEIADKALDMLGVDELGLDE--MDRKYLRTIIEKF 272 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHc
Confidence 467788999999995443333321 2222111100 000 0001223344566778877 5555554 44556
Q ss_pred CCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHH-HHHHcCCcccc
Q 036448 94 PKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFN-ILAARSFFQEF 142 (580)
Q Consensus 94 ~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 142 (580)
..+ .+..+.+-... | .+ .+.++..++ .|++.+|++..
T Consensus 273 ~~~-~~~~~~~a~~l---g----~~----~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 273 GGG-PVGLDTLAAAL---G----EE----RDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCC-ceeHHHHHHHH---C----CC----cchHHHHhhHHHHHcCCcccC
Confidence 544 45555442221 1 11 122344466 88999999643
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.61 E-value=2.6e+02 Score=26.85 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhccc-ccccccchhHHHhhhcCCCCcchhhhhhh-hcccc
Q 036448 16 PIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKV-EEIGQGLLAPLLLSYNDLPSNSMVKQCFS-YCAVF 93 (580)
Q Consensus 16 ~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~l~~sy~~L~~~~~~k~~fl-~~~~f 93 (580)
+....|++.|+|.|=.+..++..+ |..+........ .+.-......+...|..++. +.+..+. ..+.+
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~--~~~~~L~al~~~~ 251 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDE--IDRKLLSVLIEQF 251 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHh
Confidence 456678888888885554444322 222111000000 00001122224456778877 5555444 33455
Q ss_pred CCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHH-HHHHcCCcccc
Q 036448 94 PKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFN-ILAARSFFQEF 142 (580)
Q Consensus 94 ~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 142 (580)
. |-.+..+++-... |. ....++..++ .|++++|+...
T Consensus 252 ~-~~~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 252 Q-GGPVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred C-CCcccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccC
Confidence 4 3344443332221 11 1223455677 69999999643
No 93
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=22.25 E-value=1.1e+02 Score=25.94 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 036448 13 NLEPIGRKIAHKCKGLPLAAKVIGNLLRSKS 43 (580)
Q Consensus 13 ~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~ 43 (580)
.+.+||++| |.|-|...||++++...
T Consensus 108 tY~~iA~~i-----G~PsaaRaVg~A~~~n~ 133 (178)
T KOG4062|consen 108 TYGQIARRI-----GNPSAARAVGSAMAHNN 133 (178)
T ss_pred eHHHHHHHh-----CCcHHHHHHHHHHccCC
Confidence 455666655 88999999999998763
No 94
>PF04089 BRICHOS: BRICHOS domain; InterPro: IPR007084 The BRICHOS family is defined by a 100 amino acid region found in a variety of proteins implicated in dementia, respiratory distress and cancer, including BRI-2, Chondromodulin-I (ChM-I), CA11, and surfactant protein C []. In several cases, the BRICHOS region is located in the propeptide region that is removed after proteolytic processing. This domain could be involved in the complex post-translational processing of these proteins.; PDB: 2YAD_F.
Probab=21.29 E-value=50 Score=25.39 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHhcCCch
Q 036448 11 RENLEPIGRKIAHKCKGLP 29 (580)
Q Consensus 11 ~~~~~~~~~~i~~~c~GlP 29 (580)
-.+...++..|.+.|+|+|
T Consensus 75 i~D~~~lg~~I~~lC~~~p 93 (97)
T PF04089_consen 75 IVDLSFLGSPIQELCEGLP 93 (97)
T ss_dssp --------HHHHHHHTTS-
T ss_pred cCCHHHHhhHHHHHhCCCC
Confidence 3567788999999999999
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.89 E-value=64 Score=33.48 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=50.2
Q ss_pred CCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcc--cCCCeEEcCC
Q 036448 210 GLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKL--KNMRSLLNGE 287 (580)
Q Consensus 210 ~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l--~~L~~L~l~~ 287 (580)
+.+.+..+.+++|+..++.. +..+ ...-++|..|+|++|.+..+.-.++.++ ..|++|-+.|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~-------------~ssl---sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~G 279 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA-------------LSSL---SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEG 279 (585)
T ss_pred CCcceeeeecccchhhchhh-------------hhHH---HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecC
Confidence 45566677777776554333 2222 3456788999999984333333335543 4578888988
Q ss_pred CCCCccCcc--c-C----CCCCCCCcCCce
Q 036448 288 TDSLKYMPV--G-I----SKLTSLRTLDKF 310 (580)
Q Consensus 288 ~~~~~~lp~--~-i----~~L~~L~~L~~~ 310 (580)
|+..+..-. . + ...++|..||..
T Consensus 280 NPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 280 NPLCTTFSDRSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred CccccchhhhHHHHHHHHHhcchheeecCc
Confidence 865443321 1 1 256778888743
No 96
>PF14162 YozD: YozD-like protein
Probab=20.24 E-value=1.3e+02 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCcccc
Q 036448 122 MEMIGEEYFNILAARSFFQEF 142 (580)
Q Consensus 122 ~~~~~~~~~~~L~~~~ll~~~ 142 (580)
.+++|+-++.+|+.|+.+...
T Consensus 10 TEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcH
Confidence 578899999999999998643
Done!