Query 036448
Match_columns 580
No_of_seqs 468 out of 2745
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 22:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1.6E-25 5.3E-30 245.3 10.5 357 188-575 268-766 (768)
2 4fmz_A Internalin; leucine ric 99.9 4.4E-24 1.5E-28 211.9 17.1 296 188-551 43-344 (347)
3 4eco_A Uncharacterized protein 99.9 7.2E-24 2.5E-28 226.8 14.7 333 188-553 205-600 (636)
4 4fcg_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 203.4 17.3 232 188-550 80-311 (328)
5 4ecn_A Leucine-rich repeat pro 99.9 1.8E-23 6.1E-28 227.6 17.0 334 188-552 447-839 (876)
6 3vq2_A TLR4, TOLL-like recepto 99.9 5.6E-23 1.9E-27 219.9 19.9 141 186-331 29-180 (606)
7 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.3E-27 213.3 16.7 333 187-551 28-406 (455)
8 2id5_A Lingo-1, leucine rich r 99.9 5.6E-23 1.9E-27 213.1 18.0 296 186-552 29-332 (477)
9 4ecn_A Leucine-rich repeat pro 99.9 2.1E-23 7.2E-28 227.0 12.0 120 188-310 322-523 (876)
10 3rgz_A Protein brassinosteroid 99.9 7.1E-23 2.4E-27 224.2 15.5 252 188-462 246-534 (768)
11 3t6q_A CD180 antigen; protein- 99.9 2.3E-22 7.9E-27 215.1 17.7 121 186-310 30-161 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.5E-27 211.6 16.7 117 187-311 19-147 (520)
13 1o6v_A Internalin A; bacterial 99.9 4.6E-22 1.6E-26 205.3 18.4 311 188-551 67-386 (466)
14 1o6v_A Internalin A; bacterial 99.9 6.8E-22 2.3E-26 204.0 19.1 297 187-535 88-393 (466)
15 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.7E-27 203.7 14.2 296 188-552 44-351 (390)
16 4eco_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 218.6 12.2 256 189-452 81-443 (636)
17 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.3E-22 2.8E-26 208.5 19.4 116 187-310 50-177 (562)
18 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-22 1.2E-26 209.6 16.3 345 188-552 44-480 (520)
19 4fmz_A Internalin; leucine ric 99.9 3.5E-22 1.2E-26 198.1 15.3 277 208-551 40-322 (347)
20 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-22 1.7E-26 209.9 16.8 347 187-552 24-509 (549)
21 2z63_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 212.0 14.1 150 395-551 371-529 (570)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4.2E-26 207.2 17.0 336 192-552 34-509 (562)
23 2a5y_B CED-4; apoptosis; HET: 99.9 5.3E-23 1.8E-27 215.4 6.4 155 1-172 305-473 (549)
24 3bz5_A Internalin-J, INLJ; leu 99.9 3E-21 1E-25 197.6 19.0 303 188-551 41-350 (457)
25 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 212.0 13.2 150 396-551 375-532 (606)
26 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 9.8E-26 194.7 17.1 270 188-527 68-350 (390)
27 3oja_B Anopheles plasmodium-re 99.9 4.7E-22 1.6E-26 211.5 11.9 296 188-552 50-357 (597)
28 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-21 1.6E-25 207.8 16.6 123 186-311 22-154 (680)
29 3oja_B Anopheles plasmodium-re 99.9 7.2E-21 2.5E-25 202.4 17.3 271 188-527 74-356 (597)
30 3t6q_A CD180 antigen; protein- 99.9 2.3E-21 8E-26 207.3 13.3 295 190-552 255-559 (606)
31 2z81_A CD282 antigen, TOLL-lik 99.8 1E-20 3.5E-25 199.9 15.5 250 194-453 10-372 (549)
32 2id5_A Lingo-1, leucine rich r 99.8 1.8E-20 6.1E-25 194.2 16.7 287 192-551 14-307 (477)
33 3j0a_A TOLL-like receptor 5; m 99.8 5.4E-20 1.9E-24 203.5 20.8 325 187-551 22-392 (844)
34 3j0a_A TOLL-like receptor 5; m 99.8 4.9E-20 1.7E-24 203.9 18.9 118 188-308 47-180 (844)
35 3v47_A TOLL-like receptor 5B a 99.8 3.9E-20 1.3E-24 190.6 16.6 313 193-551 14-382 (455)
36 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-20 6E-25 191.9 13.0 270 205-550 35-328 (457)
37 2ft3_A Biglycan; proteoglycan, 99.8 8E-20 2.7E-24 179.7 15.6 133 397-551 193-331 (332)
38 4fcg_A Uncharacterized protein 99.8 3.5E-20 1.2E-24 181.4 12.7 214 211-556 80-293 (328)
39 1xku_A Decorin; proteoglycan, 99.8 1.8E-19 6.1E-24 177.1 17.1 93 191-308 33-127 (330)
40 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-20 8.8E-25 181.3 10.6 253 189-533 50-308 (313)
41 1xku_A Decorin; proteoglycan, 99.8 3.1E-19 1.1E-23 175.4 15.5 270 187-550 50-329 (330)
42 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-19 8.5E-24 176.2 13.4 274 187-527 52-331 (332)
43 1jl5_A Outer protein YOPM; leu 99.8 2.2E-18 7.6E-23 176.1 20.4 301 187-552 89-408 (454)
44 1ziw_A TOLL-like receptor 3; i 99.8 4.3E-19 1.5E-23 192.4 15.9 248 192-453 7-283 (680)
45 2z80_A TOLL-like receptor 2, v 99.8 1.6E-19 5.5E-24 179.2 11.3 256 188-552 51-313 (353)
46 2z63_A TOLL-like receptor 4, v 99.8 1.4E-19 4.8E-24 192.1 11.4 345 186-551 25-432 (570)
47 3g06_A SSPH2 (leucine-rich rep 99.8 3E-18 1E-22 180.5 17.8 257 190-554 41-298 (622)
48 2z66_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 170.2 12.3 93 193-308 11-107 (306)
49 1ogq_A PGIP-2, polygalacturona 99.8 4E-19 1.4E-23 172.9 8.9 225 188-455 75-304 (313)
50 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-17 3.7E-22 180.1 19.1 122 186-310 49-181 (635)
51 1jl5_A Outer protein YOPM; leu 99.8 1.1E-18 3.7E-23 178.4 10.3 263 188-533 10-293 (454)
52 3zyj_A Leucine-rich repeat-con 99.7 4E-17 1.4E-21 166.9 19.6 240 191-551 45-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.7 4.2E-17 1.4E-21 167.4 19.4 240 191-551 56-301 (452)
54 4g8a_A TOLL-like receptor 4; l 99.7 2.7E-17 9.3E-22 176.9 13.9 99 188-289 75-184 (635)
55 1z7x_W Ribonuclease inhibitor; 99.7 8.4E-20 2.9E-24 188.5 -5.8 328 188-552 27-410 (461)
56 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.7E-22 161.8 9.3 227 186-453 25-259 (306)
57 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-17 5.8E-22 159.3 9.8 203 187-431 30-236 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-18 4E-23 170.0 -0.6 249 243-554 22-276 (317)
59 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.5E-20 159.8 20.7 237 187-528 59-296 (622)
60 3oja_A Leucine-rich immune mol 99.7 5.7E-17 2E-21 167.3 9.4 59 393-452 140-201 (487)
61 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.8E-21 164.3 10.6 221 186-452 72-300 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 163.8 10.1 222 186-453 61-290 (440)
63 1wwl_A Monocyte differentiatio 99.7 4.6E-17 1.6E-21 158.3 6.1 232 245-551 56-307 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.7 2E-17 6.7E-22 161.3 3.3 94 188-309 33-127 (317)
65 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-18 8.9E-23 177.3 -3.7 213 188-430 2-237 (461)
66 2xwt_C Thyrotropin receptor; s 99.7 1.5E-15 5.3E-20 141.5 15.4 60 486-553 179-239 (239)
67 1ozn_A Reticulon 4 receptor; N 99.6 3.1E-16 1E-20 150.5 10.2 216 192-453 14-236 (285)
68 3sfz_A APAF-1, apoptotic pepti 99.6 1.8E-16 6.2E-21 183.9 10.2 142 11-170 303-452 (1249)
69 2z80_A TOLL-like receptor 2, v 99.6 5.3E-16 1.8E-20 153.8 11.5 225 188-453 75-312 (353)
70 1wwl_A Monocyte differentiatio 99.6 6.3E-17 2.1E-21 157.4 4.1 181 251-452 118-306 (312)
71 1h6u_A Internalin H; cell adhe 99.6 2E-15 7E-20 146.2 14.2 76 209-308 38-113 (308)
72 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.5E-20 147.5 11.3 188 188-453 40-228 (308)
73 1p9a_G Platelet glycoprotein I 99.6 5.5E-15 1.9E-19 141.7 15.5 109 395-552 98-207 (290)
74 2z62_A TOLL-like receptor 4, v 99.6 5.7E-15 2E-19 140.9 14.9 89 198-308 16-106 (276)
75 2ast_B S-phase kinase-associat 99.6 8.6E-17 2.9E-21 158.5 0.6 199 190-453 48-258 (336)
76 1vt4_I APAF-1 related killer D 99.6 8.3E-16 2.8E-20 164.0 7.2 112 25-163 323-436 (1221)
77 4ay9_X Follicle-stimulating ho 99.6 7.3E-15 2.5E-19 145.2 13.6 228 243-549 21-255 (350)
78 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4.2E-20 157.4 8.0 213 188-453 33-248 (487)
79 2o6q_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 140.6 11.0 193 190-453 17-216 (270)
80 2z62_A TOLL-like receptor 4, v 99.6 5.2E-15 1.8E-19 141.2 10.9 203 186-432 25-236 (276)
81 1p9a_G Platelet glycoprotein I 99.6 3.7E-15 1.2E-19 142.9 9.8 98 188-309 9-107 (290)
82 3ogk_B Coronatine-insensitive 99.6 3E-16 1E-20 167.2 2.2 116 190-308 139-276 (592)
83 3ogk_B Coronatine-insensitive 99.6 3.1E-16 1.1E-20 167.1 0.4 315 188-551 163-524 (592)
84 4ay9_X Follicle-stimulating ho 99.5 3.6E-14 1.2E-18 140.1 13.1 99 193-312 13-114 (350)
85 3rfs_A Internalin B, repeat mo 99.5 5.1E-14 1.8E-18 133.8 12.6 79 208-309 37-116 (272)
86 2o6q_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 134.7 11.4 165 243-460 28-198 (270)
87 2ca6_A RAN GTPase-activating p 99.5 1.8E-16 6.2E-21 159.2 -5.1 92 203-309 23-129 (386)
88 2xwt_C Thyrotropin receptor; s 99.5 1.8E-14 6E-19 134.3 8.3 198 187-454 29-238 (239)
89 4glp_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 137.6 10.8 204 189-452 91-304 (310)
90 4glp_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 137.5 10.2 107 394-551 194-305 (310)
91 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.5E-20 162.4 -2.0 62 485-553 455-519 (594)
92 2ast_B S-phase kinase-associat 99.5 5.7E-15 1.9E-19 145.4 2.0 203 189-452 70-282 (336)
93 1z6t_A APAF-1, apoptotic prote 99.5 4.7E-14 1.6E-18 149.9 8.7 137 13-167 305-449 (591)
94 3rfs_A Internalin B, repeat mo 99.5 2.5E-13 8.5E-18 129.1 12.2 189 188-452 40-232 (272)
95 1h6t_A Internalin B; cell adhe 99.5 2.2E-13 7.4E-18 130.7 11.3 96 188-308 45-140 (291)
96 1h6t_A Internalin B; cell adhe 99.4 6E-13 2E-17 127.6 12.1 56 250-309 42-97 (291)
97 2ca6_A RAN GTPase-activating p 99.4 1.5E-14 5.2E-19 145.2 0.1 246 188-453 31-314 (386)
98 2p1m_B Transport inhibitor res 99.4 5.4E-15 1.9E-19 157.6 -4.3 62 483-552 429-493 (594)
99 3m19_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 123.7 11.0 97 190-309 15-114 (251)
100 1m9s_A Internalin B; cell inva 99.4 4.2E-13 1.4E-17 141.2 9.0 170 208-431 39-208 (605)
101 4ezg_A Putative uncharacterize 99.4 1.2E-12 4.2E-17 117.7 10.4 99 189-308 44-142 (197)
102 4ezg_A Putative uncharacterize 99.4 1.2E-12 4.1E-17 117.7 9.4 79 209-309 41-119 (197)
103 3cvr_A Invasion plasmid antige 99.4 4.3E-12 1.5E-16 132.0 14.7 67 213-308 60-126 (571)
104 1m9s_A Internalin B; cell inva 99.4 9E-13 3.1E-17 138.7 8.5 173 188-414 42-214 (605)
105 3m19_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 119.4 11.6 166 234-453 19-190 (251)
106 3goz_A Leucine-rich repeat-con 99.3 2.2E-13 7.5E-18 135.2 3.2 83 360-453 168-264 (362)
107 1xeu_A Internalin C; cellular 99.3 1.5E-12 5.2E-17 122.7 8.7 158 235-453 25-183 (263)
108 1dce_A Protein (RAB geranylger 99.3 2.4E-14 8.2E-19 149.8 -4.5 215 251-546 346-566 (567)
109 3cvr_A Invasion plasmid antige 99.3 1.3E-12 4.6E-17 135.8 8.2 184 190-434 60-244 (571)
110 3goz_A Leucine-rich repeat-con 99.3 2.6E-13 8.8E-18 134.8 0.8 261 235-527 4-295 (362)
111 1xeu_A Internalin C; cellular 99.3 1.6E-12 5.4E-17 122.5 3.1 162 193-432 23-184 (263)
112 2v9t_B SLIT homolog 2 protein 99.2 1.7E-11 5.8E-16 112.1 9.7 93 193-308 15-110 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.2 5.4E-11 1.9E-15 108.8 11.2 93 193-308 15-111 (220)
114 2ell_A Acidic leucine-rich nuc 99.2 3.6E-11 1.2E-15 105.0 9.3 99 188-308 23-126 (168)
115 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.7E-16 133.9 6.8 106 188-309 172-277 (727)
116 2o6s_A Variable lymphocyte rec 99.2 2E-11 6.8E-16 110.8 7.1 37 395-437 146-182 (208)
117 3e6j_A Variable lymphocyte rec 99.2 6.9E-11 2.4E-15 108.8 10.6 94 192-308 22-118 (229)
118 2o6s_A Variable lymphocyte rec 99.2 1.2E-10 4.2E-15 105.5 11.5 69 234-308 12-82 (208)
119 2je0_A Acidic leucine-rich nuc 99.2 2.6E-11 9E-16 103.5 5.8 101 188-310 16-121 (149)
120 2xot_A Amphoterin-induced prot 99.1 8.9E-11 3E-15 116.2 8.8 94 193-309 22-119 (361)
121 3e6j_A Variable lymphocyte rec 99.1 2E-10 7E-15 105.6 10.2 103 186-309 37-142 (229)
122 2v9t_B SLIT homolog 2 protein 99.1 1.9E-10 6.4E-15 105.1 9.5 104 187-310 30-136 (220)
123 1dce_A Protein (RAB geranylger 99.1 1.4E-10 4.7E-15 121.3 8.3 98 190-310 442-541 (567)
124 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.3E-15 101.5 6.6 132 393-552 20-159 (168)
125 3sb4_A Hypothetical leucine ri 99.1 6.8E-10 2.3E-14 108.4 12.4 282 188-546 24-327 (329)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 3.4E-10 1.2E-14 103.4 9.1 104 186-309 29-136 (220)
127 1a9n_A U2A', U2A'; complex (nu 99.1 2.5E-10 8.4E-15 100.4 7.8 100 188-309 18-120 (176)
128 2je0_A Acidic leucine-rich nuc 99.0 1.1E-10 3.7E-15 99.6 3.6 62 245-308 33-94 (149)
129 2xot_A Amphoterin-induced prot 99.0 4.1E-10 1.4E-14 111.4 7.8 133 186-340 36-172 (361)
130 4b8c_D Glucose-repressible alc 99.0 3E-10 1E-14 122.7 6.9 102 205-310 217-324 (727)
131 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.7E-14 97.1 9.0 101 188-309 30-133 (193)
132 1a9n_A U2A', U2A'; complex (nu 98.9 5.8E-10 2E-14 98.0 5.2 138 392-556 14-156 (176)
133 1w8a_A SLIT protein; signaling 98.9 1.5E-09 5.3E-14 96.7 8.1 100 189-308 29-132 (192)
134 2wfh_A SLIT homolog 2 protein 98.9 3E-09 1E-13 94.8 8.8 96 192-310 13-110 (193)
135 1w8a_A SLIT protein; signaling 98.9 2E-09 6.9E-14 96.0 7.5 96 192-310 11-110 (192)
136 2r9u_A Variable lymphocyte rec 98.9 2.5E-09 8.5E-14 93.5 7.8 96 192-310 15-113 (174)
137 1ds9_A Outer arm dynein; leuci 98.9 7.4E-11 2.5E-15 106.0 -2.9 98 190-310 24-123 (198)
138 3g39_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 91.9 7.5 96 192-310 12-110 (170)
139 2o6r_A Variable lymphocyte rec 98.8 7.7E-09 2.6E-13 90.9 8.7 101 188-309 27-131 (177)
140 2r9u_A Variable lymphocyte rec 98.7 2.4E-08 8.3E-13 87.2 8.6 89 187-296 31-122 (174)
141 2o6r_A Variable lymphocyte rec 98.7 5.1E-08 1.7E-12 85.6 9.0 96 192-310 10-108 (177)
142 1ds9_A Outer arm dynein; leuci 98.7 1.5E-09 5E-14 97.5 -1.5 67 243-312 37-103 (198)
143 3g39_A Variable lymphocyte rec 98.6 6.7E-08 2.3E-12 84.1 8.1 83 187-289 28-113 (170)
144 2ifg_A High affinity nerve gro 98.5 2.6E-07 8.8E-12 90.8 8.2 96 193-310 12-111 (347)
145 4fdw_A Leucine rich hypothetic 98.4 4.7E-06 1.6E-10 83.0 16.5 123 397-550 248-380 (401)
146 3sb4_A Hypothetical leucine ri 98.3 8.9E-07 3E-11 86.2 6.5 44 243-287 112-157 (329)
147 4fdw_A Leucine rich hypothetic 98.1 2.4E-05 8.1E-10 77.9 13.6 104 392-525 266-379 (401)
148 2ra8_A Uncharacterized protein 98.1 2E-07 6.8E-12 91.2 -2.0 141 393-551 168-318 (362)
149 2ra8_A Uncharacterized protein 98.1 3E-06 1E-10 82.8 5.5 169 243-430 128-317 (362)
150 2ifg_A High affinity nerve gro 98.0 5.8E-06 2E-10 81.1 6.8 72 234-310 13-88 (347)
151 3e4g_A ATP synthase subunit S, 98.0 1.4E-06 4.9E-11 74.6 1.5 68 483-555 82-154 (176)
152 3un9_A NLR family member X1; l 97.9 7.4E-07 2.5E-11 87.9 -1.8 67 355-431 179-250 (372)
153 3e4g_A ATP synthase subunit S, 97.9 6E-06 2.1E-10 70.7 3.2 89 254-347 61-155 (176)
154 4fs7_A Uncharacterized protein 97.7 0.0004 1.4E-08 69.1 14.5 60 482-550 316-376 (394)
155 3un9_A NLR family member X1; l 97.7 4.1E-06 1.4E-10 82.6 -0.3 48 354-411 206-253 (372)
156 3rw6_A Nuclear RNA export fact 97.6 5.8E-05 2E-09 69.8 5.4 83 209-309 167-258 (267)
157 4fs7_A Uncharacterized protein 97.5 0.0011 3.7E-08 65.9 14.0 117 394-545 273-393 (394)
158 1io0_A Tropomodulin; LRR prote 97.1 8.5E-05 2.9E-09 65.2 0.6 83 188-285 35-128 (185)
159 4gt6_A Cell surface protein; l 97.0 0.025 8.7E-07 55.9 17.3 105 415-551 260-368 (394)
160 3rw6_A Nuclear RNA export fact 97.0 0.00066 2.3E-08 62.7 4.9 78 188-285 169-258 (267)
161 1io0_A Tropomodulin; LRR prote 96.2 0.0017 5.8E-08 56.8 2.2 87 188-289 64-162 (185)
162 4h09_A Hypothetical leucine ri 96.2 0.019 6.4E-07 56.5 10.0 77 208-308 42-119 (379)
163 4gt6_A Cell surface protein; l 95.8 0.019 6.4E-07 56.9 8.0 123 393-548 261-386 (394)
164 4h09_A Hypothetical leucine ri 95.7 0.051 1.7E-06 53.4 10.8 76 189-288 46-123 (379)
165 3rfe_A Platelet glycoprotein I 94.3 0.05 1.7E-06 44.0 5.0 50 235-289 14-66 (130)
166 3rfe_A Platelet glycoprotein I 92.1 0.21 7.1E-06 40.3 5.3 52 193-265 12-66 (130)
167 1pgv_A TMD-1, tropomodulin TMD 83.2 0.62 2.1E-05 40.4 2.7 14 252-265 96-109 (197)
168 2qen_A Walker-type ATPase; unk 82.0 3.9 0.00013 38.9 8.4 119 16-162 226-347 (350)
169 2fna_A Conserved hypothetical 77.2 4.6 0.00016 38.5 7.1 118 19-162 233-355 (357)
170 1pgv_A TMD-1, tropomodulin TMD 71.6 1.6 5.6E-05 37.7 2.0 44 245-288 117-167 (197)
171 1w5s_A Origin recognition comp 61.2 32 0.0011 33.3 9.4 113 15-143 239-372 (412)
172 2vda_B Maltoporin; sugar trans 53.7 7.7 0.00026 20.1 1.6 19 24-42 7-25 (28)
173 1hqc_A RUVB; extended AAA-ATPa 47.2 14 0.00049 34.5 3.9 35 107-141 288-324 (324)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.6e-25 Score=245.28 Aligned_cols=357 Identities=18% Similarity=0.152 Sum_probs=199.9
Q ss_pred CCceEEEEEEecCCC-cCcccccCC-CcccEEEeccCCcccccccce-------eeeccccccccc-ccchh-hccCCCc
Q 036448 188 GDKVRHLGLNFQRGT-SFPMSIRGL-DRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIE-RLPKT-LCELYNL 256 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~-~~~~~~~~l-~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~-~lp~~-i~~L~~L 256 (580)
..++++|++.+|.+. .+|..+... ++|++|++++|+.-......+ .|+++++. +. .+|.. ++++++|
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN--FSGELPMDTLLKMRGL 345 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE--EEEECCHHHHTTCTTC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc--ccCcCCHHHHhcCCCC
Confidence 467778888877776 466666554 778888887775432211111 16777776 54 66655 6777777
Q ss_pred cEEeccCCccccccchhhhccc-CCCeEEcCCCCCCc--------------------------cCcccCCCCCCCCcCCc
Q 036448 257 QKLDIRRCRNLKELPAGIGKLK-NMRSLLNGETDSLK--------------------------YMPVGISKLTSLRTLDK 309 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~--------------------------~lp~~i~~L~~L~~L~~ 309 (580)
++|++++|.....+|..+++++ +|++|++++|.... .+|..++++++|++|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 7777777763346666666665 66666666653333 34444455555555543
Q ss_pred eeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHH
Q 036448 310 FVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQL 389 (580)
Q Consensus 310 ~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (580)
..+ ...+..+ ..+..++.|+.+.+....-. ...+..+..+++|+.|+++.|.+. ...
T Consensus 426 s~N--~l~~~~p---~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~--------------~~~ 482 (768)
T 3rgz_A 426 SFN--YLSGTIP---SSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLT--------------GEI 482 (768)
T ss_dssp CSS--EEESCCC---GGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCC--------------SCC
T ss_pred cCC--cccCccc---HHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCccc--------------CcC
Confidence 221 1111111 22333444444444432211 112233555667777777766532 223
Q ss_pred hhcCCCCCCCcEEEEeecCCC-CCCcchhcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCC
Q 036448 390 LKALQLPLSVEKLGIILYGGN-IFPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIE 466 (580)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~ 466 (580)
+..+..+++|+.|++++|... .+|.++..+++|++|++++|...+.+| .++.++ |+.|+++++.-...++..+....
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 455667788889999888886 678888888999999999887665555 367788 88888887653323332221110
Q ss_pred CCC-------------------------------------------------------------------------CCCC
Q 036448 467 ESS-------------------------------------------------------------------------EDGP 473 (580)
Q Consensus 467 ~~~-------------------------------------------------------------------------~~~~ 473 (580)
... ..+.
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 000 0000
Q ss_pred CCC-CCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 474 SSS-SSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 474 ~~~-~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
... ..+..++.+++|+.|+++++. ..+..|..++.+++|+.|++++|...+.+|..+.++++|++|++++|+.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHND------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred cccccCCHHHhccccCCEEeCcCCc------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 000 111233444445555444431 1234456788899999999999886668899888999999999998732
Q ss_pred hH---------------------------HHhcCCCCCCccccccCCccc
Q 036448 553 LE---------------------------NRYREGKGEDWHKISHIPHIK 575 (580)
Q Consensus 553 l~---------------------------~~~~~~~~~~~~~i~~ip~~~ 575 (580)
-. ..|....+++|++|+|+|.+.
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 10 134556778899999998764
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.4e-24 Score=211.88 Aligned_cols=296 Identities=16% Similarity=0.145 Sum_probs=188.7
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc-----eeeecccccccccccchhhccCCCccEEecc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS-----ILSSFSSSKECIERLPKTLCELYNLQKLDIR 262 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~-----~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~ 262 (580)
.+++++|++.++.+..++. +..+++|++|++++|++-+++... -.|+++++. +..+| .+.++++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~--i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK--ITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc--ccCch-HHcCCCcCCEEECc
Confidence 4567777777777766653 667777777777777543332200 115555555 66665 47777788888888
Q ss_pred CCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 263 RCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 263 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
+|. +..+|. +..+++|++|++++|.....++. +..+++|++|++..+... .+..+..++.|+.+.+.+..
T Consensus 119 ~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-------~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 119 EDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-------DVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEECTTSC
T ss_pred CCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-------CchhhccCCCCCEEEccCCc
Confidence 777 666666 77778888888877755554443 777777777765432221 12225566666666665532
Q ss_pred CCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCC
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNL 422 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L 422 (580)
- .... .+..+++|+.++++.|.+... ..+..+++|+.|++++|....+|. +..+++|
T Consensus 189 l-~~~~-----~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L 245 (347)
T 4fmz_A 189 I-EDIS-----PLASLTSLHYFTAYVNQITDI----------------TPVANMTRLNSLKIGNNKITDLSP-LANLSQL 245 (347)
T ss_dssp C-CCCG-----GGGGCTTCCEEECCSSCCCCC----------------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred c-cccc-----cccCCCccceeecccCCCCCC----------------chhhcCCcCCEEEccCCccCCCcc-hhcCCCC
Confidence 2 1111 155667777777777663211 114566778888888887777765 6778888
Q ss_pred cEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccc
Q 036448 423 RNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEE 501 (580)
Q Consensus 423 ~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 501 (580)
++|++++| .+..++.+..++ |++|+++++. +..++ .+..+++|+.|+++++. +..
T Consensus 246 ~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~---------------------~~~~l~~L~~L~L~~n~-l~~ 301 (347)
T 4fmz_A 246 TWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS---------------------VLNNLSQLNSLFLNNNQ-LGN 301 (347)
T ss_dssp CEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG---------------------GGGGCTTCSEEECCSSC-CCG
T ss_pred CEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh---------------------hhcCCCCCCEEECcCCc-CCC
Confidence 88888877 344556677777 8888887753 32221 14577888888887763 322
Q ss_pred cccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 502 WNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 502 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
. .+..+..+++|++|++++|+ ++.++. +..+++|++|++++|+
T Consensus 302 ~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 302 E-----DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp G-----GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred c-----ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 2 22345678888888888877 666655 6668888888888876
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=7.2e-24 Score=226.76 Aligned_cols=333 Identities=14% Similarity=0.134 Sum_probs=181.4
Q ss_pred CCceEEEEEEecCCCc------------------Cccccc--CCCcccEEEeccCCcccccccce-------eeeccccc
Q 036448 188 GDKVRHLGLNFQRGTS------------------FPMSIR--GLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSK 240 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~ 240 (580)
..++++|++++|.+.. +|..+. ++++|++|++++|+........+ .|+++++.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 4677888888888777 788777 88888888888775422111111 15555553
Q ss_pred cccc--ccchhhccC------CCccEEeccCCccccccch--hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 241 ECIE--RLPKTLCEL------YNLQKLDIRRCRNLKELPA--GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 241 ~~i~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.+++|++|++.
T Consensus 285 ~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 G-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp T-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred C-CccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 1 22 355555544 555555555555 445555 55555555555555553222555 55555555555532
Q ss_pred eecCccCCCCccChhhhhcCCc-CCceeEeCCCCCCChhHHHhccccc--ccccceeEEEeecccCCchhHHhhhhhhHH
Q 036448 311 VVGGGVDGSNTCRLESLKNLQL-VRECGIEGLGNVLYLDEVERLQLYN--QQNLLRLRLEFGRVVDGEDEERRRKKEKDE 387 (580)
Q Consensus 311 ~~~~~~~~~~~~~l~~L~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (580)
..... ..+ ..+..++. |+.+.+....-. .+ +..+.. +++|+.|+++.|.+. .
T Consensus 362 ~N~l~---~lp---~~l~~l~~~L~~L~Ls~N~l~-~l----p~~~~~~~l~~L~~L~Ls~N~l~--------------~ 416 (636)
T 4eco_A 362 YNQIT---EIP---ANFCGFTEQVENLSFAHNKLK-YI----PNIFDAKSVSVMSAIDFSYNEIG--------------S 416 (636)
T ss_dssp SSEEE---ECC---TTSEEECTTCCEEECCSSCCS-SC----CSCCCTTCSSCEEEEECCSSCTT--------------T
T ss_pred CCccc---ccc---HhhhhhcccCcEEEccCCcCc-cc----chhhhhcccCccCEEECcCCcCC--------------C
Confidence 21111 011 12333333 444444332110 11 011222 225555655555421 1
Q ss_pred HHhhcCC-------CCCCCcEEEEeecCCCCCCcchh-cccCCcEEEEcCCCCCCCCCC---------CCCcc-ccceec
Q 036448 388 QLLKALQ-------LPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVKCEHLPP---------LGKLP-LEKLVI 449 (580)
Q Consensus 388 ~~~~~l~-------~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~l~~l~~---------l~~l~-L~~L~l 449 (580)
..+..+. ..++|+.|++++|....+|..+. .+++|++|++++|... .+|. +..++ |+.|++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 1222333 44566677777766666665544 4666777777666433 4443 12234 666666
Q ss_pred ccccCceEeCcccc--CCCCCC---CCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeec
Q 036448 450 IHLKSVKRVGNEFL--GIEESS---EDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVR 524 (580)
Q Consensus 450 ~~~~~l~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 524 (580)
+++. +..++..+. ....+. ..+......+..+..+++|+.|+++++..+.........+..+..+++|++|+++
T Consensus 496 s~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 496 RFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp CSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 6543 334443332 221111 1122222234456788999999997765444444444556678889999999999
Q ss_pred cCCCCCCCCcCCCCCCCcceEEEecCcch
Q 036448 525 SCNKLKALPDYLLQTTTLQDLTIWKCALL 553 (580)
Q Consensus 525 ~c~~L~~lp~~~~~l~~L~~L~i~~c~~l 553 (580)
+|. ++.+|..+. ++|++|++++|+..
T Consensus 575 ~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 575 SND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 988 699998765 89999999999643
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.9e-23 Score=203.36 Aligned_cols=232 Identities=23% Similarity=0.283 Sum_probs=167.4
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..+++.|+++++.+..+|..+.++++|++|++++|. +..+|..++++++|++|++++|. +
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-------------------l~~lp~~~~~l~~L~~L~Ls~n~-l 139 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-------------------LMELPDTMQQFAGLETLTLARNP-L 139 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-------------------CCCCCSCGGGGTTCSEEEEESCC-C
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-------------------ccchhHHHhccCCCCEEECCCCc-c
Confidence 467889999999999999989899999999998886 67888889999999999999988 7
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
..+|..++++++|++|++++|.....+|..++... +
T Consensus 140 ~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-----------------------------------~--------- 175 (328)
T 4fcg_A 140 RALPASIASLNRLRELSIRACPELTELPEPLASTD-----------------------------------A--------- 175 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC---------------------------------------------
T ss_pred ccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc-----------------------------------c---------
Confidence 78999999999999999999877777766543210 0
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEE
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYL 427 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 427 (580)
...+.++++|+.|++++|.+. .++..+..+++|+.|++++|....+|..+..+++|++|++
T Consensus 176 ----~~~~~~l~~L~~L~L~~n~l~---------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 176 ----SGEHQGLVNLQSLRLEWTGIR---------------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp ----CCCEEESTTCCEEEEEEECCC---------------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred ----hhhhccCCCCCEEECcCCCcC---------------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 001334455666666666521 1223344555666666666666666666666666666666
Q ss_pred cCCCCCCCCCCCCCccccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccc
Q 036448 428 RSCVKCEHLPPLGKLPLEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRIT 507 (580)
Q Consensus 428 ~~~~~l~~l~~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 507 (580)
++|...+.+|. .+..+++|+.|++++|..+..++.
T Consensus 237 s~n~~~~~~p~------------------------------------------~~~~l~~L~~L~L~~n~~~~~~p~--- 271 (328)
T 4fcg_A 237 RGCTALRNYPP------------------------------------------IFGGRAPLKRLILKDCSNLLTLPL--- 271 (328)
T ss_dssp TTCTTCCBCCC------------------------------------------CTTCCCCCCEEECTTCTTCCBCCT---
T ss_pred cCCcchhhhHH------------------------------------------HhcCCCCCCEEECCCCCchhhcch---
Confidence 66655544432 124566677776666655544433
Q ss_pred cccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecC
Q 036448 508 RKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKC 550 (580)
Q Consensus 508 ~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c 550 (580)
.+..+++|++|++++|+.++.+|..+.++++|+.+++...
T Consensus 272 ---~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 ---DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ---TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ---hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 5668899999999999999999999999999999988753
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.8e-23 Score=227.55 Aligned_cols=334 Identities=13% Similarity=0.113 Sum_probs=218.6
Q ss_pred CCceEEEEEEecCCCc------------------Cccccc--CCCcccEEEeccCCcccccccce-------eeeccccc
Q 036448 188 GDKVRHLGLNFQRGTS------------------FPMSIR--GLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSK 240 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~ 240 (580)
..+++.|++++|.+.. +|..+. ++++|++|++++|+........+ .|+++++.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 899988 99999999999996432222211 17777775
Q ss_pred cccc--ccchhhccCC-------CccEEeccCCccccccch--hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 241 ECIE--RLPKTLCELY-------NLQKLDIRRCRNLKELPA--GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 241 ~~i~--~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
. +. .+|..++++. +|++|++++|. +..+|. .++++++|++|++++| .+..+| .++.+++|+.|++
T Consensus 527 ~-lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 G-ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp T-SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEEC
T ss_pred C-cccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEEC
Confidence 2 33 4777666655 78888888777 557777 7778888888888777 345777 7777777777774
Q ss_pred eeecCccCCCCccChhhhhcCCc-CCceeEeCCCCCCChhHHHhcccccc--cccceeEEEeecccCCchhHHhhhhhhH
Q 036448 310 FVVGGGVDGSNTCRLESLKNLQL-VRECGIEGLGNVLYLDEVERLQLYNQ--QNLLRLRLEFGRVVDGEDEERRRKKEKD 386 (580)
Q Consensus 310 ~~~~~~~~~~~~~~l~~L~~L~~-L~~l~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 386 (580)
..+... ..+ ..+..++. |+.+.+....- ..+ +..+... ++|+.|+++.|.+....
T Consensus 603 s~N~l~---~lp---~~l~~l~~~L~~L~Ls~N~L-~~l----p~~~~~~~~~~L~~L~Ls~N~l~g~i----------- 660 (876)
T 4ecn_A 603 DYNQIE---EIP---EDFCAFTDQVEGLGFSHNKL-KYI----PNIFNAKSVYVMGSVDFSYNKIGSEG----------- 660 (876)
T ss_dssp CSSCCS---CCC---TTSCEECTTCCEEECCSSCC-CSC----CSCCCTTCSSCEEEEECCSSCTTTTS-----------
T ss_pred cCCccc---cch---HHHhhccccCCEEECcCCCC-CcC----chhhhccccCCCCEEECcCCcCCCcc-----------
Confidence 322211 122 23444555 56666554321 111 1122222 34788888777632110
Q ss_pred HHHhhcCC--CCCCCcEEEEeecCCCCCCcchh-cccCCcEEEEcCCCCCCCCCC---------CCCcc-ccceeccccc
Q 036448 387 EQLLKALQ--LPLSVEKLGIILYGGNIFPKWLT-SLTNLRNLYLRSCVKCEHLPP---------LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 387 ~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~l~~l~~---------l~~l~-L~~L~l~~~~ 453 (580)
..++..+. ..++|+.|++++|....+|.++. .+++|+.|+|++|.. ..+|. ...++ |+.|+++++.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCC
Confidence 00111111 23478889999888888888776 788899999988843 35553 22456 8888888763
Q ss_pred CceEeCcccc--CCCCCC---CCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCC
Q 036448 454 SVKRVGNEFL--GIEESS---EDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 528 (580)
Q Consensus 454 ~l~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 528 (580)
+..++..+. ....+. ..+......+..+..+++|+.|++++++.+.........|..+..+++|+.|++++|.
T Consensus 740 -L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~- 817 (876)
T 4ecn_A 740 -LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND- 817 (876)
T ss_dssp -CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred -CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-
Confidence 555554443 222222 2222233344567788999999998866554444444556678889999999999988
Q ss_pred CCCCCcCCCCCCCcceEEEecCcc
Q 036448 529 LKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 529 L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
++.+|..+. ++|+.|++++|+.
T Consensus 818 L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 818 IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCccCHhhc--CCCCEEECCCCCC
Confidence 699998865 7999999999974
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=5.6e-23 Score=219.88 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred cCCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccce-------eeeccccccccccc-chhhccCCCc
Q 036448 186 SFGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERL-PKTLCELYNL 256 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L 256 (580)
..+.++++|++++|.+..++. .+.++++|++|++++|+.-.+....+ .|+++++. +..+ |..|+++++|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSL 106 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCCCCTTSSTTCTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--ccccChhhcCCcccC
Confidence 346889999999999988655 78999999999999997666544332 28999998 8877 7779999999
Q ss_pred cEEeccCCccccccc-hhhhcccCCCeEEcCCCCCCc-cCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCC
Q 036448 257 QKLDIRRCRNLKELP-AGIGKLKNMRSLLNGETDSLK-YMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQ 331 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 331 (580)
++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++... ......+..+..+.+|+
T Consensus 107 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 107 ENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN--YIQTITVNDLQFLRENP 180 (606)
T ss_dssp CEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS--CCCEECTTTTHHHHHCT
T ss_pred CEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC--cceecChhhhhhhhccc
Confidence 999999998 66665 678999999999999994433 57888999999999985433 22222233455555554
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.7e-23 Score=213.29 Aligned_cols=333 Identities=14% Similarity=0.123 Sum_probs=215.6
Q ss_pred CCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcc-cccccce-------eeeccccccccccc-chhhccCCCc
Q 036448 187 FGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDF-NLSLSSI-------LSSFSSSKECIERL-PKTLCELYNL 256 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l-~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L 256 (580)
.++++++|++++|.+..+ |..+.++++|++|++++|... .+....+ .|+++++. +..+ |..++++++|
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ--FLQLETGAFNGLANL 105 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT--TCEECTTTTTTCTTC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc--cCccChhhccCcccC
Confidence 568999999999999886 778999999999999999653 3322221 28888888 7766 6678899999
Q ss_pred cEEeccCCccccccchh--hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcC
Q 036448 257 QKLDIRRCRNLKELPAG--IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLV 333 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 333 (580)
++|++++|.....+|.. ++++++|++|++++|......|.. ++++++|++|++... ......+..+..+.. ..|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~-~~L 182 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN--KVKSICEEDLLNFQG-KHF 182 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC--CBSCCCTTTSGGGTT-CEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC--cccccChhhhhcccc-ccc
Confidence 99999998833345554 888999999999998543334555 788889998885432 222222223333321 223
Q ss_pred CceeEeCCCCCC----ChhHHHhcccccccccceeEEEeecccCCchhHHhhh---hh--------------------hH
Q 036448 334 RECGIEGLGNVL----YLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRK---KE--------------------KD 386 (580)
Q Consensus 334 ~~l~i~~~~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--------------------~~ 386 (580)
+.+.+....-.. .........+..+++|+.|+++.|.+........... .. ..
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 333333221100 0111111223455677788877775321100000000 00 00
Q ss_pred HHHhhcC--CCCCCCcEEEEeecCCCCC-CcchhcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCcc
Q 036448 387 EQLLKAL--QLPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNE 461 (580)
Q Consensus 387 ~~~~~~l--~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~ 461 (580)
......+ ...++|+.|++++|....+ |.++..+++|++|++++|......| .+..++ |++|+++++. +..+...
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 341 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR 341 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChh
Confidence 0000000 0136899999999888654 6778899999999999986554433 577888 9999999864 4443222
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcC-CCCCC
Q 036448 462 FLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTT 540 (580)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-~~~l~ 540 (580)
. +..+++|+.|+++++ .+..+ .+..+..+++|++|++++|. ++.+|.. +..++
T Consensus 342 ~-------------------~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 395 (455)
T 3v47_A 342 M-------------------FENLDKLEVLDLSYN-HIRAL-----GDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLT 395 (455)
T ss_dssp G-------------------GTTCTTCCEEECCSS-CCCEE-----CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred H-------------------hcCcccCCEEECCCC-ccccc-----ChhhccccccccEEECCCCc-cccCCHhHhccCC
Confidence 1 457899999999887 34333 23467789999999999977 8888874 57899
Q ss_pred CcceEEEecCc
Q 036448 541 TLQDLTIWKCA 551 (580)
Q Consensus 541 ~L~~L~i~~c~ 551 (580)
+|++|++++|+
T Consensus 396 ~L~~L~l~~N~ 406 (455)
T 3v47_A 396 SLQKIWLHTNP 406 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEEccCCC
Confidence 99999999875
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.6e-23 Score=213.10 Aligned_cols=296 Identities=17% Similarity=0.187 Sum_probs=206.9
Q ss_pred cCCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccC
Q 036448 186 SFGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRR 263 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~ 263 (580)
..+..++.|++++|.+..+ +..+.++++|++|++++|. +..+ |..++++++|++|+|++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-------------------VSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-------------------CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-------------------cCEeChhhhhCCccCCEEECCC
Confidence 3467899999999999886 5678999999999999886 5554 56688888888888888
Q ss_pred Cccccccchh-hhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 264 CRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 264 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
|. +..+|.. ++++++|++|++++|......|..+..+++|++|++...... ......+..+++|+.+.+....
T Consensus 90 n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 90 NR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-----YISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-----EECTTSSTTCTTCCEEEEESCC
T ss_pred Cc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-----eeChhhccCCCCCCEEECCCCc
Confidence 87 7777754 577888888888888554455667888888888875332111 1112234556666677776532
Q ss_pred CCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCC-CCCCcchhcccC
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGG-NIFPKWLTSLTN 421 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~l~~l~~ 421 (580)
- .......+..+++|+.|+++.|.+.. .....+..+++|+.|++++|.. ..+|.......+
T Consensus 164 l----~~~~~~~l~~l~~L~~L~l~~n~i~~--------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 164 L----TSIPTEALSHLHGLIVLRLRHLNINA--------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp C----SSCCHHHHTTCTTCCEEEEESCCCCE--------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred C----cccChhHhcccCCCcEEeCCCCcCcE--------------eChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 1 12223345677888888888876321 1223566778888898888765 445666666678
Q ss_pred CcEEEEcCCCCCCCCC--CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccc
Q 036448 422 LRNLYLRSCVKCEHLP--PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEE 498 (580)
Q Consensus 422 L~~L~L~~~~~l~~l~--~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 498 (580)
|++|++++|. ++.+| .+..++ |+.|+++++. +..++... +..+++|+.|+++++ .
T Consensus 226 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 226 LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------------------LHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp CSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-------------------CTTCTTCCEEECCSS-C
T ss_pred ccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhh-------------------ccccccCCEEECCCC-c
Confidence 9999998884 45555 366778 8888888754 44443221 457888999988875 3
Q ss_pred ccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceEEEecCcc
Q 036448 499 LEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 499 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~i~~c~~ 552 (580)
+..+ .+..+..+++|+.|++++|. ++.+|. .+..+++|++|++++||-
T Consensus 284 l~~~-----~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 284 LAVV-----EPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSEE-----CTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred cceE-----CHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCc
Confidence 3332 23457788999999999976 888876 456789999999988763
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.1e-23 Score=226.97 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCceEEEEEEecCCCc-CcccccCCCcccEEEe-ccCCcccc-----cc-------------------------------
Q 036448 188 GDKVRHLGLNFQRGTS-FPMSIRGLDRLRTLLI-YDRSDFNL-----SL------------------------------- 229 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-~~~~~~~l~~Lr~L~l-~~~~~l~l-----~~------------------------------- 229 (580)
..+++.|++.++.+.. +|+.++++++|++|++ ++|..-.. ..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 3689999999999875 8999999999999999 65521000 00
Q ss_pred -------------------ccee---eec--ccccccccccchhhccCCCccEEeccCCccccc----------------
Q 036448 230 -------------------SSIL---SSF--SSSKECIERLPKTLCELYNLQKLDIRRCRNLKE---------------- 269 (580)
Q Consensus 230 -------------------~~~~---L~l--~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~---------------- 269 (580)
..+. +.+ ..+. ++.+|..++++++|++|+|++|. +..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~--L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE--EEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCc--ccchhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccc
Confidence 0000 112 2244 56688888888888888888887 554
Q ss_pred --cchhhh--cccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 270 --LPAGIG--KLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 270 --lp~~i~--~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
+|..++ ++++|++|++++|.....+|..++++++|++|++.
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 787777 88888888888886677778778888888888754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.1e-23 Score=224.22 Aligned_cols=252 Identities=17% Similarity=0.117 Sum_probs=171.9
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCccc-ccc------cc-eeeeccccccccc-ccchhhccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFN-LSL------SS-ILSSFSSSKECIE-RLPKTLCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~-l~~------~~-~~L~l~~~~~~i~-~lp~~i~~L~~L~~ 258 (580)
..+++.|++++|.+....+.. .+++|++|++++|+... ++. .. ..|+++++. +. .+|..++++++|++
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLES 322 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccE
Confidence 568999999999887533333 89999999999996431 111 11 239999999 65 78899999999999
Q ss_pred EeccCCccccccchh-hhcccCCCeEEcCCCCCCccCcccCCCCC-CCCcCCceeecCccCCCCcc--------------
Q 036448 259 LDIRRCRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVGISKLT-SLRTLDKFVVGGGVDGSNTC-------------- 322 (580)
Q Consensus 259 L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~-------------- 322 (580)
|++++|.....+|.. ++++++|++|++++|.....+|..++.++ +|++|++..+... +..+.
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~--~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE--EECCTTTTCSTTCCCCEEE
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC--CCcChhhhhcccCCccEEE
Confidence 999999944589977 89999999999999965558898888887 8888885432211 00000
Q ss_pred ---------ChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcC
Q 036448 323 ---------RLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKAL 393 (580)
Q Consensus 323 ---------~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 393 (580)
....+.+++.|+.+.+.... +....+..+..+++|+.|+++.|.+. ...+..+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~--------------~~~p~~~ 462 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLE--------------GEIPQEL 462 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCC--------------SCCCGGG
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCccc--------------CcCCHHH
Confidence 11123333344444433311 11111223455566666666666522 2334556
Q ss_pred CCCCCCcEEEEeecCCC-CCCcchhcccCCcEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccc
Q 036448 394 QLPLSVEKLGIILYGGN-IFPKWLTSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEF 462 (580)
Q Consensus 394 ~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~ 462 (580)
..+++|+.|++++|... .+|.++..+++|++|++++|.....+|. ++.++ |++|+++++.-...++..+
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 67788888888888876 5688888889999999998876656663 67788 9999998876444454443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.3e-22 Score=215.14 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=89.3
Q ss_pred cCCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccce-------eeeccccccccccc-chhhccCCCc
Q 036448 186 SFGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERL-PKTLCELYNL 256 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L 256 (580)
..+..+++|++++|.+..+ |..+.++++|++|++++|++..+....+ .|+++++. +..+ |..++++++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--LIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc--ccccChhhhcccccc
Confidence 3467889999999998886 5678899999999999987655543322 28888888 7665 5668888888
Q ss_pred cEEeccCCcccccc-chhhhcccCCCeEEcCCCCCCccC-cccCCCCCCCCcCCce
Q 036448 257 QKLDIRRCRNLKEL-PAGIGKLKNMRSLLNGETDSLKYM-PVGISKLTSLRTLDKF 310 (580)
Q Consensus 257 ~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~ 310 (580)
++|++++|. +..+ |..++++++|++|++++|. +..+ ++.+..+++|++|++.
T Consensus 108 ~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 108 KHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp CEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECC
T ss_pred cEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcc
Confidence 888888887 6555 5667888888888888884 4443 2334448888888753
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=211.55 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccce-------eeecccccccccccchhhccCCCccE
Q 036448 187 FGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKTLCELYNLQK 258 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~i~~L~~L~~ 258 (580)
.+.++++|++++|.+..++ ..+..+++|++|++++|+.-.+....+ .|+++++. ++.+|.. .+++|++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK--LVKISCH--PTVNLKH 94 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC--CCEEECC--CCCCCSE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc--eeecCcc--ccCCccE
Confidence 4578999999999998865 578999999999999997544432221 17777777 7777765 6777777
Q ss_pred EeccCCcccc--ccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCC--CcCCcee
Q 036448 259 LDIRRCRNLK--ELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSL--RTLDKFV 311 (580)
Q Consensus 259 L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~~~~ 311 (580)
|++++|. +. .+|..++++++|++|++++|. +.. ..++.+++| ++|++..
T Consensus 95 L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 95 LDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEE
T ss_pred EeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeec
Confidence 7777776 43 356667777777777777763 322 345556666 6666543
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=4.6e-22 Score=205.29 Aligned_cols=311 Identities=16% Similarity=0.190 Sum_probs=138.7
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc----e-eeecccccccccccchhhccCCCccEEecc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS----I-LSSFSSSKECIERLPKTLCELYNLQKLDIR 262 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~----~-~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~ 262 (580)
..++++|+++++.+..++. +..+++|++|++++|....+.... + .|+++++. +..+|. ++++++|++|+++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~--l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ--ITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CCCCGG-GTTCTTCSEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCC--CCCChH-HcCCCCCCEEECC
Confidence 4566666666666666555 666666666666666533322100 1 14555554 454443 4555555555555
Q ss_pred CCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 263 RCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 263 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
+|. +..+|. ++.+++|++|+++++ +..++. ++++++|++|++..+... .+..+..+++|+.+.+.+..
T Consensus 143 ~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~-------~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 143 SNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVS-------DISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSC
T ss_pred CCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCC-------CChhhccCCCCCEEEecCCc
Confidence 554 444432 444444444444321 122221 444444444443221111 12223344444444443321
Q ss_pred CCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCC
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNL 422 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L 422 (580)
-.. . . .+..+++|+.|+++.|.+... ..+..+++|+.|++++|....++. +..+++|
T Consensus 211 l~~-~---~--~~~~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 267 (466)
T 1o6v_A 211 ISD-I---T--PLGILTNLDELSLNGNQLKDI----------------GTLASLTNLTDLDLANNQISNLAP-LSGLTKL 267 (466)
T ss_dssp CCC-C---G--GGGGCTTCCEEECCSSCCCCC----------------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred ccc-c---c--cccccCCCCEEECCCCCcccc----------------hhhhcCCCCCEEECCCCccccchh-hhcCCCC
Confidence 110 0 0 133344555555554442211 123344555555555555544443 4455555
Q ss_pred cEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCC---CCCCCCCCCCCCccccCccccccccccccc
Q 036448 423 RNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEES---SEDGPSSSSSSPSVIAFPKLKSLIIGAMEE 498 (580)
Q Consensus 423 ~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 498 (580)
++|++++|. +..++.+..++ |+.|+++++. +..+.. +.....+ ...++..... ..+..+++|+.|+++++ .
T Consensus 268 ~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n-~ 342 (466)
T 1o6v_A 268 TELKLGANQ-ISNISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNN-K 342 (466)
T ss_dssp SEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEECCSS-C
T ss_pred CEEECCCCc-cCccccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCc-hhhccCccCCEeECCCC-c
Confidence 555555552 22333344555 5555555432 111110 0000000 0000000000 11345556666666554 2
Q ss_pred ccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 499 LEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 499 L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
+... ..+..+++|+.|++++|+ +..++. +..+++|++|++++|+
T Consensus 343 l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 343 VSDV-------SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCC-------GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred cCCc-------hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 3222 135566777777777665 444443 5566777777777665
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.8e-22 Score=204.00 Aligned_cols=297 Identities=17% Similarity=0.181 Sum_probs=164.2
Q ss_pred CCCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccc----e-eeecccccccccccchhhccCCCccEEec
Q 036448 187 FGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSS----I-LSSFSSSKECIERLPKTLCELYNLQKLDI 261 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~----~-~L~l~~~~~~i~~lp~~i~~L~~L~~L~L 261 (580)
...++++|+++++.+..++. +..+++|++|++++|.+-.+.... + .|+++++. +..+|. ++.+++|++|++
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT--ISDISA-LSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEE--ECCCGG-GTTCTTCSEEEE
T ss_pred ccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCc--cCCChh-hccCCcccEeec
Confidence 35789999999999998877 999999999999999765554311 1 28888888 887764 677777777776
Q ss_pred cCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 262 RRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 262 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
++ . +..++. ++++++|++|++++| .+..++ .+..+++|++|++..+... .+..+..++.|+.+.+.+.
T Consensus 164 ~~-~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 164 GN-Q-VTDLKP-LANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNNQIS-------DITPLGILTNLDELSLNGN 231 (466)
T ss_dssp EE-S-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCC-------CCGGGGGCTTCCEEECCSS
T ss_pred CC-c-ccCchh-hccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCCccc-------ccccccccCCCCEEECCCC
Confidence 53 2 344443 666667777777666 344443 3556666666654322111 1112344445555555442
Q ss_pred CCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccC
Q 036448 342 GNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTN 421 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~ 421 (580)
.- ... ..+..+++|+.|+++.|.+... ..+..+++|+.|++++|....+|. +..+++
T Consensus 232 ~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 288 (466)
T 1o6v_A 232 QL-KDI-----GTLASLTNLTDLDLANNQISNL----------------APLSGLTKLTELKLGANQISNISP-LAGLTA 288 (466)
T ss_dssp CC-CCC-----GGGGGCTTCSEEECCSSCCCCC----------------GGGTTCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred Cc-ccc-----hhhhcCCCCCEEECCCCccccc----------------hhhhcCCCCCEEECCCCccCcccc-ccCCCc
Confidence 21 111 1234455555555555542211 013344455555555555444443 444555
Q ss_pred CcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCC---CCCCCCCCCCCCccccCcccccccccccc
Q 036448 422 LRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEES---SEDGPSSSSSSPSVIAFPKLKSLIIGAME 497 (580)
Q Consensus 422 L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 497 (580)
|+.|++++|. +..++.+..++ |+.|+++++. +..... +.....+ ...++.... .+.+..+++|+.|+++++.
T Consensus 289 L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISPISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred cCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCc
Confidence 5555555442 23333344444 5555554432 111110 0000000 000111111 1246789999999998873
Q ss_pred cccccccccccccccCCCCccceeeeccCCCCCCCCcC
Q 036448 498 ELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY 535 (580)
Q Consensus 498 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~ 535 (580)
+..+.. +..+++|+.|++++|+ +..+|..
T Consensus 365 -l~~~~~-------~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 365 -ISDLTP-------LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp -CCBCGG-------GTTCTTCCEEECCCEE-EECCCBC
T ss_pred -cCccch-------hhcCCCCCEEeccCCc-ccCCchh
Confidence 433322 6789999999999987 7666654
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-22 Score=203.73 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=212.0
Q ss_pred CCceEEEEEEecCCCcCccc-ccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPMS-IRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
..+++++++.++.+..+|.. +..+++|++|++++|++-.+....+ .|+++++. +..+|.. ++++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC--CCcCCHHHhcCCCCCCE
Confidence 46889999999998888876 5788999999999987655543222 27888888 7777654 788888999
Q ss_pred EeccCCccccccchhh-hcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCcee
Q 036448 259 LDIRRCRNLKELPAGI-GKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECG 337 (580)
Q Consensus 259 L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 337 (580)
|++++|. +..+|..+ +++++|++|++++|......|..++.+++|++|++....... . .+..++.|+.+.
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLFHAN 192 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C---CGGGCTTCSEEE
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c---ccccccccceee
Confidence 9998887 77888764 788889999998884433334558888888888754322211 1 234455555555
Q ss_pred EeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchh
Q 036448 338 IEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLT 417 (580)
Q Consensus 338 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~ 417 (580)
+....- ..+....+|+.|+++.|.+... ....+++|+.|++++|..... .++.
T Consensus 193 l~~n~l---------~~~~~~~~L~~L~l~~n~l~~~-----------------~~~~~~~L~~L~l~~n~l~~~-~~l~ 245 (390)
T 3o6n_A 193 VSYNLL---------STLAIPIAVEELDASHNSINVV-----------------RGPVNVELTILKLQHNNLTDT-AWLL 245 (390)
T ss_dssp CCSSCC---------SEEECCSSCSEEECCSSCCCEE-----------------ECCCCSSCCEEECCSSCCCCC-GGGG
T ss_pred cccccc---------cccCCCCcceEEECCCCeeeec-----------------cccccccccEEECCCCCCccc-HHHc
Confidence 544211 1123345788888888763211 112357899999999988775 5788
Q ss_pred cccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccc
Q 036448 418 SLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGA 495 (580)
Q Consensus 418 ~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 495 (580)
.+++|++|++++|......| .+..++ |+.|+++++. +..++.. ...+++|+.|++++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------------------~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------------GQPIPTLKVLDLSH 304 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS--------------------SSCCTTCCEEECCS
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc--------------------cCCCCCCCEEECCC
Confidence 99999999999986544333 467788 9999999854 4444321 24789999999998
Q ss_pred cccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 496 MEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 496 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
+ .+..++. .+..+++|++|++++|+ ++.+| +..+++|++|++++|+-
T Consensus 305 n-~l~~~~~------~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 305 N-HLLHVER------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp S-CCCCCGG------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred C-cceecCc------cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 7 4554433 45678999999999987 88886 66789999999999874
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=8.2e-23 Score=218.60 Aligned_cols=256 Identities=13% Similarity=0.084 Sum_probs=148.0
Q ss_pred CceEEEEEEecCCCc-CcccccCCCcccEEEeccCCc------cc-------cc------------cc------------
Q 036448 189 DKVRHLGLNFQRGTS-FPMSIRGLDRLRTLLIYDRSD------FN-------LS------------LS------------ 230 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~------l~-------l~------------~~------------ 230 (580)
.+++.|+++++.+.. +|.+++++++|++|++++|.. .. ++ .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 589999999998874 899999999999999998843 10 00 00
Q ss_pred -------------c------e-----eeecccccccccccchhhccCCCccEEeccCCccccc-----------------
Q 036448 231 -------------S------I-----LSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE----------------- 269 (580)
Q Consensus 231 -------------~------~-----~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~----------------- 269 (580)
. + .+....+. ++.+|..++++++|++|+|++|. +..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~--l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN--ITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE--EEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCC--CccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcc
Confidence 0 0 01111344 66688888888888888888887 655
Q ss_pred -cchhhh--cccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCC-CCccChhhh---hcCCcCCceeEeCCC
Q 036448 270 -LPAGIG--KLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDG-SNTCRLESL---KNLQLVRECGIEGLG 342 (580)
Q Consensus 270 -lp~~i~--~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L---~~L~~L~~l~i~~~~ 342 (580)
+|..++ ++++|++|++++|.....+|..++++++|++|++..+.. ..+ ..+..+..+ ..+++|+.+.+....
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 888888 888888888888877777888888888888887543320 111 112222222 222555555554422
Q ss_pred CCCChhHHHhcccccccccceeEEEeeccc-CCchhHH--------hhhhhhHHHHhhcCCCCCC-CcEEEEeecCCCCC
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVV-DGEDEER--------RRKKEKDEQLLKALQLPLS-VEKLGIILYGGNIF 412 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~--------~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~l 412 (580)
-. .+.. ...+.++++|+.|+++.|.+. ... ... .........++..+..+++ |+.|++++|....+
T Consensus 317 l~-~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 317 LK-TFPV--ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp CS-SCCC--HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred CC-ccCc--hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc
Confidence 11 1100 002344455555555554422 110 000 0000000133444555666 77777777777777
Q ss_pred Ccchhcc--cCCcEEEEcCCCCCCCCCC-CC-------Ccc-ccceecccc
Q 036448 413 PKWLTSL--TNLRNLYLRSCVKCEHLPP-LG-------KLP-LEKLVIIHL 452 (580)
Q Consensus 413 p~~l~~l--~~L~~L~L~~~~~l~~l~~-l~-------~l~-L~~L~l~~~ 452 (580)
|.++..+ ++|++|++++|......|. +. .++ |++|+++++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 7766643 3677777777755443332 33 445 666666653
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=8.3e-22 Score=208.49 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccce-------eeecccccccccccchhhccCCCccE
Q 036448 187 FGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKTLCELYNLQK 258 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~i~~L~~L~~ 258 (580)
.+.++++|++++|.+..++ ..+.++++|++|++++|+.-.+....+ .|++++|. ++.+|.. .+++|++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR--LQNISCC--PMASLRH 125 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC--CCEECSC--CCTTCSE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc--CCccCcc--ccccCCE
Confidence 4578999999999988876 578999999999999987544432221 16777776 6667665 6677777
Q ss_pred EeccCCcccccc--chhhhcccCCCeEEcCCCCCCccCcccCCCCCCC--CcCCce
Q 036448 259 LDIRRCRNLKEL--PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSL--RTLDKF 310 (580)
Q Consensus 259 L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L--~~L~~~ 310 (580)
|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| ++|++.
T Consensus 126 L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 126 LDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEE
T ss_pred EECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEee
Confidence 7777766 4443 3566777777777777663 222 234444444 666543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=209.61 Aligned_cols=345 Identities=14% Similarity=0.040 Sum_probs=192.4
Q ss_pred CCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccce----eeecccccccccc--cchhhccCCCccEEe
Q 036448 188 GDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSI----LSSFSSSKECIER--LPKTLCELYNLQKLD 260 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~----~L~l~~~~~~i~~--lp~~i~~L~~L~~L~ 260 (580)
..++++|++++|.+..+ |..+.++++|++|++++|+.-.++.... .|++++|. +.. +|..++++++|++|+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~--l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNA--FDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSC--CSSCCCCGGGGGCTTCCEEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCc--cccccchhhhccCCcceEEE
Confidence 57899999999999886 6789999999999999997766654422 29999999 776 578899999999999
Q ss_pred ccCCccccccchhhhcccCC--CeEEcCCCCC--CccCcccCCC--------------------------CCCCCcCCce
Q 036448 261 IRRCRNLKELPAGIGKLKNM--RSLLNGETDS--LKYMPVGISK--------------------------LTSLRTLDKF 310 (580)
Q Consensus 261 L~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~lp~~i~~--------------------------L~~L~~L~~~ 310 (580)
+++|. +.. ..++.+++| ++|++++|.. ....|..+.. +++|+.|++.
T Consensus 122 L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 122 LSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred ecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 99988 554 457788888 9999988854 3444444443 5566666644
Q ss_pred eecCccCC-CCccChhhhhcCC---------------------------cCCceeEeCCCCCCChhHHHhccc-----cc
Q 036448 311 VVGGGVDG-SNTCRLESLKNLQ---------------------------LVRECGIEGLGNVLYLDEVERLQL-----YN 357 (580)
Q Consensus 311 ~~~~~~~~-~~~~~l~~L~~L~---------------------------~L~~l~i~~~~~~~~~~~~~~~~l-----~~ 357 (580)
........ .....+..+..++ .|+.+.+....- ....+..+ ..
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL----QGQLDFRDFDYSGTS 274 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE----ESCCCCCCCCCCSCC
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc----cCccccchhhccccc
Confidence 32100000 0000011111111 333333332110 00001111 34
Q ss_pred ccccceeEEEeecccCCchhHHhhh-h----------hhHHHHhhcCCCCCCCcEEEEeecCCCC-CCcchhcccCCcEE
Q 036448 358 QQNLLRLRLEFGRVVDGEDEERRRK-K----------EKDEQLLKALQLPLSVEKLGIILYGGNI-FPKWLTSLTNLRNL 425 (580)
Q Consensus 358 ~~~L~~L~l~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L 425 (580)
+++|+.++++.+.+ .......... . ............+++|+.|++++|.... +|.++..+++|++|
T Consensus 275 l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 275 LKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred CceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 45555555554443 1110000000 0 0000000001455667777777766654 46666677777777
Q ss_pred EEcCCCCCC--CCC-CCCCcc-ccceecccccCceEeCcc-ccCCCCCCC---CCCCCCCCCCccccC-ccccccccccc
Q 036448 426 YLRSCVKCE--HLP-PLGKLP-LEKLVIIHLKSVKRVGNE-FLGIEESSE---DGPSSSSSSPSVIAF-PKLKSLIIGAM 496 (580)
Q Consensus 426 ~L~~~~~l~--~l~-~l~~l~-L~~L~l~~~~~l~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~-~~L~~L~l~~~ 496 (580)
++++|.... .+| .++.++ |++|+++++.--..++.. +.....+.. .+....... ...+ ++|+.|+++++
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSN 431 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG--GGSCCTTCCEEECCSS
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch--hhhhcccCCEEECCCC
Confidence 777664332 121 145566 777777664422112221 111110000 000000000 1122 57888888776
Q ss_pred ccccccccccccccccCCCCccceeeeccCCCCCCCCcC-CCCCCCcceEEEecCcc
Q 036448 497 EELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 497 ~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~i~~c~~ 552 (580)
.++.++. .+..+++|++|++++|. ++.+|.. +..+++|++|++++||-
T Consensus 432 -~l~~ip~------~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 432 -KIKSIPK------QVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -CCCCCCG------GGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cccccch------hhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 4444332 45588999999999976 8889886 77899999999998763
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.5e-22 Score=198.11 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=210.6
Q ss_pred ccCCCcccEEEeccCCcccccccc-----eeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCe
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSS-----ILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRS 282 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~-----~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 282 (580)
+..+++|++|+++++.+-+++... -.|+++++. +..+|. +..+++|++|++++|. +..+|. ++++++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ--ITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCc--cccchh-hhcCCcCCEEEccCCc-ccCchH-HcCCCcCCE
Confidence 456889999999999766655422 128999998 898888 9999999999999997 777764 899999999
Q ss_pred EEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccc
Q 036448 283 LLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLL 362 (580)
Q Consensus 283 L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~ 362 (580)
|++++| .+..+|. +..+++|++|++..+... ..+..+..++.|+.+.+.+..-... . .+..+++|+
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~------~~~~~~~~l~~L~~L~l~~~~~~~~-~-----~~~~l~~L~ 180 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHNL------SDLSPLSNMTGLNYLTVTESKVKDV-T-----PIANLTDLY 180 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTC------CCCGGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCS
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCCc------ccccchhhCCCCcEEEecCCCcCCc-h-----hhccCCCCC
Confidence 999998 5666666 888999999985433222 2344577777888888776543211 1 166789999
Q ss_pred eeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCc
Q 036448 363 RLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKL 442 (580)
Q Consensus 363 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l 442 (580)
.|++++|.+... ..+..+++|+.|++.++....++. +..+++|++|++++|. +..++.+..+
T Consensus 181 ~L~l~~n~l~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l 242 (347)
T 4fmz_A 181 SLSLNYNQIEDI----------------SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANL 242 (347)
T ss_dssp EEECTTSCCCCC----------------GGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred EEEccCCccccc----------------ccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcC
Confidence 999998874321 125677899999999998887765 7889999999999984 4555668888
Q ss_pred c-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCcccee
Q 036448 443 P-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSL 521 (580)
Q Consensus 443 ~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L 521 (580)
+ |++|+++++. +..++ .+..+++|+.|+++++ .+..++ .+..+++|++|
T Consensus 243 ~~L~~L~l~~n~-l~~~~---------------------~~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L 292 (347)
T 4fmz_A 243 SQLTWLEIGTNQ-ISDIN---------------------AVKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSL 292 (347)
T ss_dssp TTCCEEECCSSC-CCCCG---------------------GGTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEE
T ss_pred CCCCEEECCCCc-cCCCh---------------------hHhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEE
Confidence 9 9999999863 33221 1458899999999987 455442 36689999999
Q ss_pred eeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 522 EVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 522 ~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
++++|+.....|..+..+++|++|++++|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999998434455667789999999999997
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=5.1e-22 Score=209.86 Aligned_cols=347 Identities=17% Similarity=0.173 Sum_probs=203.3
Q ss_pred CCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCcc
Q 036448 187 FGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQ 257 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~ 257 (580)
.+..+++|++++|.+..+ |..+.++++|++|++++|+.-.+....+ .|+++++. +..+|.. ++++++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc--cCccCHHHhccCCCCc
Confidence 357889999999988875 5678889999999999987655543322 28888888 8877766 88888888
Q ss_pred EEeccCCcccc--ccchhhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCceeecCccCCCCccChhhh-------
Q 036448 258 KLDIRRCRNLK--ELPAGIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFVVGGGVDGSNTCRLESL------- 327 (580)
Q Consensus 258 ~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L------- 327 (580)
+|++++|. +. ..|..++++++|++|++++|..+..+| ..++.+++|++|++....... ..+..+..+
T Consensus 102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCSEEEEEE
T ss_pred EEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--cChhhhhccccCceEe
Confidence 88888887 54 346678888888888888886566665 357777777777754332211 111111111
Q ss_pred --------------hcCCcCCceeEeCCCCCCC-----------------------hhH----HHhccccc---------
Q 036448 328 --------------KNLQLVRECGIEGLGNVLY-----------------------LDE----VERLQLYN--------- 357 (580)
Q Consensus 328 --------------~~L~~L~~l~i~~~~~~~~-----------------------~~~----~~~~~l~~--------- 357 (580)
..+++|+.+.+.+..-... +.. .....+..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 1233333333332110000 000 00000000
Q ss_pred --------------------------------------------------ccccceeEEEeecccCCchhHHhh------
Q 036448 358 --------------------------------------------------QQNLLRLRLEFGRVVDGEDEERRR------ 381 (580)
Q Consensus 358 --------------------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~------ 381 (580)
..+|+.|+++.|.+..........
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 112223333322221111100000
Q ss_pred ----hhhhHHHH---hhcCCCCCCCcEEEEeecCCCCCC---cchhcccCCcEEEEcCCCCCCCCCC-CCCcc-ccceec
Q 036448 382 ----KKEKDEQL---LKALQLPLSVEKLGIILYGGNIFP---KWLTSLTNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVI 449 (580)
Q Consensus 382 ----~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~lp---~~l~~l~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l 449 (580)
........ ...+..+++|+.|++++|....+| ..+..+++|++|++++|. ++.+|. +..++ |++|++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEEC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEEC
Confidence 00011111 233566788888888888887765 346788888888888884 445554 56677 888888
Q ss_pred ccccCceEeCcccc-CCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCC
Q 036448 450 IHLKSVKRVGNEFL-GIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNK 528 (580)
Q Consensus 450 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 528 (580)
+++. +..++.... ....+...+.... .....+++|+.|+++++ +++.++. ...+++|++|++++|.
T Consensus 418 s~N~-l~~l~~~~~~~L~~L~Ls~N~l~---~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N~- 484 (549)
T 2z81_A 418 SSTG-IRVVKTCIPQTLEVLDVSNNNLD---SFSLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRNQ- 484 (549)
T ss_dssp TTSC-CSCCCTTSCTTCSEEECCSSCCS---CCCCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSSC-
T ss_pred CCCC-cccccchhcCCceEEECCCCChh---hhcccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCCc-
Confidence 8764 333322111 0000001111111 11247889999999887 4554432 3468999999999987
Q ss_pred CCCCCc-CCCCCCCcceEEEecCcc
Q 036448 529 LKALPD-YLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 529 L~~lp~-~~~~l~~L~~L~i~~c~~ 552 (580)
++.+|. .+..+++|++|++++||-
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCCcCHHHHhcCcccCEEEecCCCc
Confidence 777665 578899999999998863
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=211.95 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=79.8
Q ss_pred CCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCC--CCCCcc-ccceecccccCceEeCccccCCCCCCC-
Q 036448 395 LPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP--PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSE- 470 (580)
Q Consensus 395 ~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~--~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~- 470 (580)
.+++|+.|++++|....+|..+..+++|++|++++|......+ .+..++ |++|+++++.-....+..+.+...+..
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 4455666666666555555545566666666666654333222 345566 666666665422222221111111110
Q ss_pred --CCCCCC--CCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceE
Q 036448 471 --DGPSSS--SSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDL 545 (580)
Q Consensus 471 --~~~~~~--~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L 545 (580)
.+.... ..+..+..+++|+.|+++++. +... .+..+..+++|++|++++|. ++.+|. .+..+++|++|
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL-----SPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE-----CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCc-cccC-----ChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEE
Confidence 000000 112234566677777766652 2222 23356678888888888876 666654 56678888888
Q ss_pred EEecCc
Q 036448 546 TIWKCA 551 (580)
Q Consensus 546 ~i~~c~ 551 (580)
++++|+
T Consensus 524 ~l~~N~ 529 (570)
T 2z63_A 524 WLHTNP 529 (570)
T ss_dssp ECCSSC
T ss_pred EecCCc
Confidence 888865
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-21 Score=207.16 Aligned_cols=336 Identities=17% Similarity=0.111 Sum_probs=194.5
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccce-------eeeccccccccccc-chhhccCCCccEEeccC
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERL-PKTLCELYNLQKLDIRR 263 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~ 263 (580)
++++++++.++.+|..+. ++|++|++++|.+-.+....+ .|+++++. ++.+ |..++++++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCC
Confidence 677888888877777654 778888888886555443222 17888887 7776 45577888888888888
Q ss_pred CccccccchhhhcccCCCeEEcCCCCCCccC--cccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELPAGIGKLKNMRSLLNGETDSLKYM--PVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|. +..+|.. .+++|++|++++| .+..+ |..++++++|++|++...... ...+..+.+| .|+.+.+...
T Consensus 110 N~-l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 110 NR-LQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----QLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp SC-CCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----TTTTGGGTTS-CEEEEEEEES
T ss_pred Cc-CCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----cCchhhhhhc-eeeEEEeecc
Confidence 77 7777775 7888888888888 44443 467788888888875432211 1223333333 2233333221
Q ss_pred CC--C----CChhH-----------------------------H------------------------------------
Q 036448 342 GN--V----LYLDE-----------------------------V------------------------------------ 350 (580)
Q Consensus 342 ~~--~----~~~~~-----------------------------~------------------------------------ 350 (580)
.- . ..+.. +
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 10 0 00000 0
Q ss_pred --------HhcccccccccceeEEEeecccCCchhHH--------------------hh-hhhhHHHHh-----------
Q 036448 351 --------ERLQLYNQQNLLRLRLEFGRVVDGEDEER--------------------RR-KKEKDEQLL----------- 390 (580)
Q Consensus 351 --------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------------------~~-~~~~~~~~~----------- 390 (580)
.........+|+.|+++.|.+...-.... .. .........
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 00000011266777777665431100000 00 000000000
Q ss_pred -------hcCCCCCCCcEEEEeecCCCC-CCcchhcccCCcEEEEcCCCCCCCCC----CCCCcc-ccceecccccCceE
Q 036448 391 -------KALQLPLSVEKLGIILYGGNI-FPKWLTSLTNLRNLYLRSCVKCEHLP----PLGKLP-LEKLVIIHLKSVKR 457 (580)
Q Consensus 391 -------~~l~~~~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~~~~l~~l~----~l~~l~-L~~L~l~~~~~l~~ 457 (580)
.....+++|+.|++++|.... +|.++..+++|++|++++|. ++.++ .+..++ |++|+++++.--..
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 001567889999999888866 57788889999999999884 44443 367788 88998887652221
Q ss_pred eCccc-cCCCCCCC---CCCCCCCCCCccccC-cccccccccccccccccccccccccccCCCCccceeeeccCCCCCCC
Q 036448 458 VGNEF-LGIEESSE---DGPSSSSSSPSVIAF-PKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL 532 (580)
Q Consensus 458 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 532 (580)
++... .+...+.. .+..... .....+ ++|+.|+++++ .++.++. .+..+++|++|++++|. ++.+
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~~L~~L~L~~N-~l~~ip~------~~~~l~~L~~L~L~~N~-l~~l 488 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTG--SVFRCLPPKVKVLDLHNN-RIMSIPK------DVTHLQALQELNVASNQ-LKSV 488 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCG--GGGSSCCTTCSEEECCSS-CCCCCCT------TTTSSCCCSEEECCSSC-CCCC
T ss_pred cChhhhcCcccCCEEECCCCCCCc--chhhhhcCcCCEEECCCC-cCcccCh------hhcCCCCCCEEECCCCC-CCCC
Confidence 33221 11111110 0000100 011223 57888887776 4554433 45578999999999876 8889
Q ss_pred CcC-CCCCCCcceEEEecCcc
Q 036448 533 PDY-LLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 533 p~~-~~~l~~L~~L~i~~c~~ 552 (580)
|.. +..+++|+.|++++||-
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCB
T ss_pred CHHHHhcCCCCCEEEecCCCc
Confidence 887 77899999999998763
No 23
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=5.3e-23 Score=215.44 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=120.5
Q ss_pred CccCCCCCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcccccccccchhHHHhhhcCCCCc
Q 036448 1 MAFLRRSFEDRENLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVEEIGQGLLAPLLLSYNDLPSN 80 (580)
Q Consensus 1 ~aF~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 80 (580)
+||+.. .++++++++++|+++|+|+||||+++|+.|+.+ +. +|...+.+..+.. ...++..++.+||++||.
T Consensus 305 ~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~- 376 (549)
T 2a5y_B 305 YGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPYSYKSLAM- 376 (549)
T ss_dssp TSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH-
T ss_pred HhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhcccccccH-
Confidence 356543 247899999999999999999999999999877 32 3333344333322 235688999999999999
Q ss_pred chhhhhhh-----------hccccCCCcccCHHHHHHHHHHc--CCccCCC-chhHHHHHHHHHHHHHHcCCccccccCC
Q 036448 81 SMVKQCFS-----------YCAVFPKNYNMNKEELISLWMAQ--GYLNTEE-DEEMEMIGEEYFNILAARSFFQEFKKDD 146 (580)
Q Consensus 81 ~~~k~~fl-----------~~~~f~~~~~i~~~~Li~~w~a~--g~~~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~ 146 (580)
++|.||+ |||+||+++.|+ ++.|+|+ ||+...+ +..++++++ |+++|+++||++....+
T Consensus 377 -~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~- 449 (549)
T 2a5y_B 377 -ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM- 449 (549)
T ss_dssp -HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS-
T ss_pred -HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC-
Confidence 9999999 999999999998 8999999 9998776 567888888 99999999999987643
Q ss_pred CCCcceEEecHHHHHHHHHhhhcceE
Q 036448 147 DDDIMSCKMHDIVHDFAQFVSRKECL 172 (580)
Q Consensus 147 ~~~~~~~~mhdl~~~~~~~i~~~e~~ 172 (580)
.+.+|+|||+||++|++++.+++.
T Consensus 450 --~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 --PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp --SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred --CceEEEeChHHHHHHHHHHHHHHH
Confidence 345799999999999999877653
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3e-21 Score=197.55 Aligned_cols=303 Identities=17% Similarity=0.128 Sum_probs=204.0
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccce----eeecccccccccccchhhccCCCccEEeccC
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSI----LSSFSSSKECIERLPKTLCELYNLQKLDIRR 263 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~----~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~ 263 (580)
..++++|+++++.+..+| .+..+++|++|++++|+.-.++.... .|+++++. ++.+| ++++++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~--l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNK--LTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC--CSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCC--Cceee--cCCCCcCCEEECCC
Confidence 467889999999888876 68889999999999987544432221 27888887 77775 78888888888888
Q ss_pred CccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCC
Q 036448 264 CRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGN 343 (580)
Q Consensus 264 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~ 343 (580)
|. +..+| ++.+++|++|++++| .+..+| ++.+++|++|++..+.... .+ .+..++.|+.+.+....-
T Consensus 116 N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~------~~-~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 116 NK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT------KL-DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp SC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC------CC-CCTTCTTCCEEECCSSCC
T ss_pred Cc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc------cc-ccccCCcCCEEECCCCcc
Confidence 87 66676 788888888888888 455554 7788888888754321111 11 244556666666655321
Q ss_pred CCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCc
Q 036448 344 VLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLR 423 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~ 423 (580)
.. ..+..+++|+.|+++.|.+... .+..+++|+.|++++|....+| +..+++|+
T Consensus 183 -~~------l~l~~l~~L~~L~l~~N~l~~~-----------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~ 236 (457)
T 3bz5_A 183 -TE------LDVSQNKLLNRLNCDTNNITKL-----------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLT 236 (457)
T ss_dssp -CC------CCCTTCTTCCEEECCSSCCSCC-----------------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCS
T ss_pred -ce------eccccCCCCCEEECcCCcCCee-----------------ccccCCCCCEEECcCCcccccC--ccccCCCC
Confidence 11 1266778888888888774211 2566788889999888888877 77888899
Q ss_pred EEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccc
Q 036448 424 NLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEW 502 (580)
Q Consensus 424 ~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 502 (580)
.|++++|. ++.+| .+.++ |+.|+++.. .++.+.-. ....... .....+++|+.|+++++..+..+
T Consensus 237 ~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~----------~n~~~~~-~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 237 YFDCSVNP-LTELD-VSTLSKLTTLHCIQT-DLLEIDLT----------HNTQLIY-FQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp EEECCSSC-CSCCC-CTTCTTCCEEECTTC-CCSCCCCT----------TCTTCCE-EECTTCTTCCCCCCTTCTTCCEE
T ss_pred EEEeeCCc-CCCcC-HHHCCCCCEEeccCC-CCCEEECC----------CCccCCc-ccccccccCCEEECCCCccccee
Confidence 99998884 34444 45666 776666542 22222110 0000000 01357789999999998777665
Q ss_pred cccccc--ccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCc
Q 036448 503 NYRITR--KENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 503 ~~~~~~--~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 551 (580)
+..... .-.+..+++|++|++++|. ++.+| +..+++|+.|+++++.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 542110 0124567889999998876 77774 7789999999998764
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.8e-22 Score=212.02 Aligned_cols=150 Identities=19% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCC--CCCCcc-ccceecccccCceEeCccccCCCCCCCC-
Q 036448 396 PLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP--PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSED- 471 (580)
Q Consensus 396 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~--~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~- 471 (580)
+++|+.|++++|....+|..+..+++|+.|++++|......+ .+..++ |++|+++++.-....+..+.....+...
T Consensus 375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 344455555444444444444455555555555553332222 344455 5555555543222122111111111100
Q ss_pred --CCCCCC--CCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEE
Q 036448 472 --GPSSSS--SSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTI 547 (580)
Q Consensus 472 --~~~~~~--~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i 547 (580)
+..... .+..+..+++|+.|+++++ .+... .+..+..+++|++|++++|......|..+..+++|++|++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQI-----SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE-----CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCC-cCCcc-----ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 000000 1122344555555555554 22211 2234556667777777766522233556666677777777
Q ss_pred ecCc
Q 036448 548 WKCA 551 (580)
Q Consensus 548 ~~c~ 551 (580)
++|.
T Consensus 529 ~~N~ 532 (606)
T 3vq2_A 529 SFNR 532 (606)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 7664
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.9e-21 Score=194.67 Aligned_cols=270 Identities=15% Similarity=0.107 Sum_probs=201.1
Q ss_pred CCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
.+++++|+++++.+..++. .+..+++|++|++++|++-.+....+ .|+++++. +..+|.. ++++++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--cCcCCHHHhcCCCCCcE
Confidence 4689999999999888654 78999999999999997655543322 28999999 9999987 489999999
Q ss_pred EeccCCcccccc-chhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCcee
Q 036448 259 LDIRRCRNLKEL-PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECG 337 (580)
Q Consensus 259 L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 337 (580)
|++++|. +..+ |..++++++|++|++++| .+..++ ++.+++|+.|++... .+..+.....|+.+.
T Consensus 146 L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l~~n----------~l~~~~~~~~L~~L~ 211 (390)
T 3o6n_A 146 LSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN----------LLSTLAIPIAVEELD 211 (390)
T ss_dssp EECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEECCSS----------CCSEEECCSSCSEEE
T ss_pred EECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeecccc----------cccccCCCCcceEEE
Confidence 9999998 6555 456899999999999999 455553 667888888875322 223334445566666
Q ss_pred EeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-Ccch
Q 036448 338 IEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWL 416 (580)
Q Consensus 338 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l 416 (580)
+.+..- . .. .....++|+.|+++.|.+... ..+..+++|+.|++++|....+ |..+
T Consensus 212 l~~n~l-~---~~---~~~~~~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 212 ASHNSI-N---VV---RGPVNVELTILKLQHNNLTDT----------------AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CCSSCC-C---EE---ECCCCSSCCEEECCSSCCCCC----------------GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred CCCCee-e---ec---cccccccccEEECCCCCCccc----------------HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 655321 1 11 112347899999999874321 3466789999999999998766 7788
Q ss_pred hcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccc
Q 036448 417 TSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIG 494 (580)
Q Consensus 417 ~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 494 (580)
..+++|++|++++|.. +.++ ....+| |++|+++++. +..++.. +..+++|+.|+++
T Consensus 269 ~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------------------~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 269 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERN--------------------QPQFDRLENLYLD 326 (390)
T ss_dssp TTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGG--------------------HHHHTTCSEEECC
T ss_pred cccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-ceecCcc--------------------ccccCcCCEEECC
Confidence 8999999999999854 4444 356788 9999999864 4433322 3578999999998
Q ss_pred ccccccccccccccccccCCCCccceeeeccCC
Q 036448 495 AMEELEEWNYRITRKENISIMPRLSSLEVRSCN 527 (580)
Q Consensus 495 ~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 527 (580)
++. ++.++ +..+++|+.|++++|+
T Consensus 327 ~N~-i~~~~--------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 327 HNS-IVTLK--------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSC-CCCCC--------CCTTCCCSEEECCSSC
T ss_pred CCc-cceeC--------chhhccCCEEEcCCCC
Confidence 864 44332 4678999999999987
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.7e-22 Score=211.50 Aligned_cols=296 Identities=16% Similarity=0.109 Sum_probs=210.6
Q ss_pred CCceEEEEEEecCCCcCccc-ccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPMS-IRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
...++.+++.++.+..+|.. +..+++|++|++++|.+-.+....+ .|+|+++. +..+|.. ++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CCCCCHHHHcCCCCCCE
Confidence 35678888888887777665 5678888888888886555443222 17777777 7777765 688999999
Q ss_pred EeccCCccccccchhh-hcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCcee
Q 036448 259 LDIRRCRNLKELPAGI-GKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECG 337 (580)
Q Consensus 259 L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 337 (580)
|+|++|. +..+|..+ +++++|++|++++|......|..++.+++|++|++..+.... . .+..++.|+.+.
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~---~~~~l~~L~~L~ 198 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLFHAN 198 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-----C---CGGGCTTCSEEE
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-----c---Chhhhhhhhhhh
Confidence 9999987 77888764 789999999999985444445568889999988854322211 1 234455555555
Q ss_pred EeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchh
Q 036448 338 IEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLT 417 (580)
Q Consensus 338 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~ 417 (580)
+....- ..+....+|+.|+++.|.+... . ...+++|+.|++++|.... +.++.
T Consensus 199 l~~n~l---------~~l~~~~~L~~L~ls~n~l~~~---------------~--~~~~~~L~~L~L~~n~l~~-~~~l~ 251 (597)
T 3oja_B 199 VSYNLL---------STLAIPIAVEELDASHNSINVV---------------R--GPVNVELTILKLQHNNLTD-TAWLL 251 (597)
T ss_dssp CCSSCC---------SEEECCTTCSEEECCSSCCCEE---------------E--CSCCSCCCEEECCSSCCCC-CGGGG
T ss_pred cccCcc---------ccccCCchhheeeccCCccccc---------------c--cccCCCCCEEECCCCCCCC-Chhhc
Confidence 554211 1133446788888888763211 1 1224689999999998876 57888
Q ss_pred cccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccc
Q 036448 418 SLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGA 495 (580)
Q Consensus 418 ~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 495 (580)
.+++|+.|+|++|......| .++.++ |+.|+++++. +..++.. ...+|+|+.|++++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--------------------~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------------GQPIPTLKVLDLSH 310 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS--------------------SSCCTTCCEEECCS
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc--------------------cccCCCCcEEECCC
Confidence 99999999999996554433 477889 9999999854 4444321 34689999999998
Q ss_pred cccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 496 MEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 496 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
+ .+..++. .+..+++|+.|++++|+ +..+| +..+++|+.|++++||.
T Consensus 311 N-~l~~i~~------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 311 N-HLLHVER------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp S-CCCCCGG------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred C-CCCccCc------ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 7 4444433 46679999999999988 77776 56689999999999874
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.8e-21 Score=207.75 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=100.8
Q ss_pred cCCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccce-------eeecccccccccccch-hhccCCCc
Q 036448 186 SFGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPK-TLCELYNL 256 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~-~i~~L~~L 256 (580)
..+.++++|+++++.+..+|. .+.++++|++|++++|..-.+....+ .|+++++. +..+|. .|+++++|
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLSDKTFAFCTNL 99 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccChhhhccCCCC
Confidence 346899999999999988765 58999999999999997655543322 29999998 999997 49999999
Q ss_pred cEEeccCCccccccc-hhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCcee
Q 036448 257 QKLDIRRCRNLKELP-AGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFV 311 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~ 311 (580)
++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..
T Consensus 100 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 100 TELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp SEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred CEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 999999998 66666 5789999999999999965555566788999999998543
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=7.2e-21 Score=202.38 Aligned_cols=271 Identities=15% Similarity=0.098 Sum_probs=201.4
Q ss_pred CCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
..+++.|++++|.+..++. .+..+++|++|++++|.+-.+....+ .|+|++|. +..+|.. ++++++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--CCCCCHHHhccCCCCCE
Confidence 4689999999999988654 88999999999999997655554332 29999999 9999987 589999999
Q ss_pred EeccCCcccccc-chhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCcee
Q 036448 259 LDIRRCRNLKEL-PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECG 337 (580)
Q Consensus 259 L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 337 (580)
|++++|. +..+ |..++.+++|++|++++| .+..++ ++.+++|+.|++... .+..+.....|+.+.
T Consensus 152 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n----------~l~~l~~~~~L~~L~ 217 (597)
T 3oja_B 152 LSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN----------LLSTLAIPIAVEELD 217 (597)
T ss_dssp EECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSS----------CCSEEECCTTCSEEE
T ss_pred EEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccC----------ccccccCCchhheee
Confidence 9999998 5555 456999999999999999 555554 567888888875321 233344445566666
Q ss_pred EeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-Ccch
Q 036448 338 IEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWL 416 (580)
Q Consensus 338 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l 416 (580)
+....- .. . .....++|+.|+++.|.+.. +..+..+++|+.|++++|....+ |..+
T Consensus 218 ls~n~l-~~---~---~~~~~~~L~~L~L~~n~l~~----------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 218 ASHNSI-NV---V---RGPVNVELTILKLQHNNLTD----------------TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCSSCC-CE---E---ECSCCSCCCEEECCSSCCCC----------------CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccCCcc-cc---c---ccccCCCCCEEECCCCCCCC----------------ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 655321 11 1 11123689999999997432 24566789999999999998766 7888
Q ss_pred hcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccc
Q 036448 417 TSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGA 495 (580)
Q Consensus 417 ~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 495 (580)
..+++|+.|+|++|......+....+| |+.|+++++. +..++. .+..+++|+.|++++
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~--------------------~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVER--------------------NQPQFDRLENLYLDH 333 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGG--------------------GHHHHTTCSEEECCS
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCc--------------------ccccCCCCCEEECCC
Confidence 999999999999985443323355689 9999999864 333322 245789999999998
Q ss_pred cccccccccccccccccCCCCccceeeeccCC
Q 036448 496 MEELEEWNYRITRKENISIMPRLSSLEVRSCN 527 (580)
Q Consensus 496 ~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 527 (580)
+. +..+ .+..+++|+.|++++|+
T Consensus 334 N~-l~~~--------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 NS-IVTL--------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SC-CCCC--------CCCTTCCCSEEECCSSC
T ss_pred CC-CCCc--------ChhhcCCCCEEEeeCCC
Confidence 74 4333 25688999999999988
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.3e-21 Score=207.33 Aligned_cols=295 Identities=16% Similarity=0.174 Sum_probs=216.6
Q ss_pred ceEEEEEEecCCCcCccc-ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcccc
Q 036448 190 KVRHLGLNFQRGTSFPMS-IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLK 268 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~ 268 (580)
.++.+++.++.+..++.. +..+++|++|++++|+ ++.+|..++.+++|++|++++|. +.
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~lp~~l~~l~~L~~L~l~~n~-l~ 314 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-------------------LSELPSGLVGLSTLKKLVLSANK-FE 314 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-------------------CSCCCSSCCSCTTCCEEECTTCC-CS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-------------------cCCCChhhcccccCCEEECccCC-cC
Confidence 788889988888876554 7888999998888876 88899999999999999999998 55
Q ss_pred cc-chhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 269 EL-PAGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 269 ~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
.+ |..++++++|++|++++|.....+|.. ++.+++|++|++..+.... .......+..++.|+.+.+....
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l~~L~~L~l~~n~---- 387 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET---SDCCNLQLRNLSHLQSLNLSYNE---- 387 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE---EEESTTTTTTCTTCCEEECCSCS----
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc---ccCcchhcccCCCCCEEECCCCc----
Confidence 44 668999999999999999665566665 8899999999864332221 11112345666777777776532
Q ss_pred hhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-CcchhcccCCcEE
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLTNLRNL 425 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L 425 (580)
+.......+..+++|+.|+++.|.+.... ....+..+++|+.|++++|..... |.++..+++|++|
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKD-------------AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCT-------------TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcc-------------cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 22233345777899999999988732111 112366788999999999988654 6778899999999
Q ss_pred EEcCCCCCC-CC---CCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccc
Q 036448 426 YLRSCVKCE-HL---PPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELE 500 (580)
Q Consensus 426 ~L~~~~~l~-~l---~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 500 (580)
++++|.... .+ ..+..++ |+.|+++++. +..+... .+..+++|+.|+++++. +.
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------------------~~~~l~~L~~L~Ls~N~-l~ 513 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH-------------------AFTSLKMMNHVDLSHNR-LT 513 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT-------------------TTTTCTTCCEEECCSSC-CC
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh-------------------hhccccCCCEEECCCCc-cC
Confidence 999996543 12 2367788 9999999875 4333221 14578999999998863 33
Q ss_pred ccccccccccccCCCCccceeeeccCCCCCCCC-cCCCCCCCcceEEEecCcc
Q 036448 501 EWNYRITRKENISIMPRLSSLEVRSCNKLKALP-DYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 501 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~ 552 (580)
. ..+..+..+++| .|++++|. ++.+| ..+..+++|++|++++||-
T Consensus 514 ~-----~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 514 S-----SSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp G-----GGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred c-----CChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence 2 234467789999 99999987 55554 4567789999999999874
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1e-20 Score=199.89 Aligned_cols=250 Identities=19% Similarity=0.128 Sum_probs=158.6
Q ss_pred EEEEecCCCcCcccccCCCcccEEEeccCCcccccccce-------eeecccccccccccc-hhhccCCCccEEeccCCc
Q 036448 194 LGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLP-KTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 194 L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 265 (580)
.+.+++.++.+|..+. ++|++|++++|++-.+....+ .|+++++. +..+| ..++++++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCCc
Confidence 4556677888888764 799999999997655543322 29999999 88887 569999999999999998
Q ss_pred cccccchh-hhcccCCCeEEcCCCCCCc--cCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 266 NLKELPAG-IGKLKNMRSLLNGETDSLK--YMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 266 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
+..+|+. ++++++|++|++++|. +. ..|..++++++|++|++..+.... ......+..+++|+.+.+....
T Consensus 86 -l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 86 -LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS----EIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp -CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC----EECTTTTTTCCEEEEEEEEETT
T ss_pred -cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc----ccCHhhhhcccccCeeeccCCc
Confidence 7667665 9999999999999994 54 456789999999999976543111 1111234455555565554321
Q ss_pred CC-------CC-------------hhHHHhcccccccccceeEEEeecccCCchhHH-----------------hhhhhh
Q 036448 343 NV-------LY-------------LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEER-----------------RRKKEK 385 (580)
Q Consensus 343 ~~-------~~-------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~ 385 (580)
-. .. ........+..+++|+.|+++.|.+........ ......
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 10 00 001111112346788888888887544210000 000000
Q ss_pred HHHHhhcC-----------------------------------------------------------CCCCCCcEEEEee
Q 036448 386 DEQLLKAL-----------------------------------------------------------QLPLSVEKLGIIL 406 (580)
Q Consensus 386 ~~~~~~~l-----------------------------------------------------------~~~~~L~~L~l~~ 406 (580)
...+...+ ....+|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 00010000 1124577777777
Q ss_pred cCCCCCCcchh-cccCCcEEEEcCCCCCCCC----CCCCCcc-ccceeccccc
Q 036448 407 YGGNIFPKWLT-SLTNLRNLYLRSCVKCEHL----PPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 407 ~~~~~lp~~l~-~l~~L~~L~L~~~~~l~~l----~~l~~l~-L~~L~l~~~~ 453 (580)
|....+|.++. .+++|++|++++|.....+ ..++.++ |++|+++++.
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence 77777787764 6888888888888654432 2356778 8888888753
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=194.24 Aligned_cols=287 Identities=18% Similarity=0.140 Sum_probs=210.0
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.++.+++.+..+|..+. +++++|++++|+ ++.++ ..|.++++|++|+|++|. +..+
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n~-i~~~ 71 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNR-------------------IKTLNQDEFASFPHLEELELNENI-VSAV 71 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSC-------------------CCEECTTTTTTCTTCCEEECTTSC-CCEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCc-------------------cceECHhHccCCCCCCEEECCCCc-cCEe
Confidence 356677777888887663 689999988886 66664 569999999999999998 5555
Q ss_pred -chhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChh
Q 036448 271 -PAGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLD 348 (580)
Q Consensus 271 -p~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~ 348 (580)
|..++++++|++|++++| .+..+|.. ++++++|++|++...... .. ....+..+++|+.+.+.... +.
T Consensus 72 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~---~~~~~~~l~~L~~L~l~~n~----l~ 141 (477)
T 2id5_A 72 EPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIV--IL---LDYMFQDLYNLKSLEVGDND----LV 141 (477)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCC--EE---CTTTTTTCTTCCEEEECCTT----CC
T ss_pred ChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccc--cC---ChhHccccccCCEEECCCCc----cc
Confidence 778999999999999999 57777765 789999999985432221 11 12334566677777776521 22
Q ss_pred HHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCC-cchhcccCCcEEEE
Q 036448 349 EVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLYL 427 (580)
Q Consensus 349 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L 427 (580)
......+.++++|+.|+++.|.+.... ...+..+++|+.|++.+|....++ ..+..+++|++|++
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIP--------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCC--------------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred eeChhhccCCCCCCEEECCCCcCcccC--------------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 233345778899999999988743221 234566789999999999887664 46778999999999
Q ss_pred cCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccc
Q 036448 428 RSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYR 505 (580)
Q Consensus 428 ~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 505 (580)
++|.....++. ....+ |+.|+++++. +..++.. .+..+++|+.|+++++. +..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-------------------~~~~l~~L~~L~Ls~n~-l~~~~-- 264 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYL-------------------AVRHLVYLRFLNLSYNP-ISTIE-- 264 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHH-------------------HHTTCTTCCEEECCSSC-CCEEC--
T ss_pred CCCccccccCcccccCccccEEECcCCc-ccccCHH-------------------HhcCccccCeeECCCCc-CCccC--
Confidence 99887776654 34445 8999988763 3333221 14578999999998863 44332
Q ss_pred cccccccCCCCccceeeeccCCCCCCC-CcCCCCCCCcceEEEecCc
Q 036448 506 ITRKENISIMPRLSSLEVRSCNKLKAL-PDYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 506 ~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~i~~c~ 551 (580)
+..+..+++|++|++++|. ++.+ |..+..+++|++|++++|.
T Consensus 265 ---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 265 ---GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ---TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC
T ss_pred ---hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc
Confidence 3356789999999999987 5554 6688889999999999984
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.4e-20 Score=203.52 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=195.6
Q ss_pred CCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCc-ccccccce-------eeeccccccccccc-chhhccCCCc
Q 036448 187 FGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSD-FNLSLSSI-------LSSFSSSKECIERL-PKTLCELYNL 256 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~-l~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L 256 (580)
.+.++++|++++|.+..+ |..+.++++|++|++++|.. ..+....+ .|+|++|. +..+ |..|+++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--CcccCHhHccCCccc
Confidence 578999999999999885 77899999999999999843 22222111 17777777 6655 5667777777
Q ss_pred cEEeccCCccccccchh--hhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcC
Q 036448 257 QKLDIRRCRNLKELPAG--IGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLV 333 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 333 (580)
++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++.. +......+..+..+.. ++|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~--N~i~~~~~~~l~~l~~-~~L 176 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS--NQIFLVCEHELEPLQG-KTL 176 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES--SCCCCCCSGGGHHHHH-CSS
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC--CcCCeeCHHHcccccC-Ccc
Confidence 77777777633335554 6777777777777774322222 3577777777777432 2222222333333321 445
Q ss_pred CceeEeCCCCCCChhHHHhccccccc------ccceeEEEeecccCCchhHHhhhhh----------------------h
Q 036448 334 RECGIEGLGNVLYLDEVERLQLYNQQ------NLLRLRLEFGRVVDGEDEERRRKKE----------------------K 385 (580)
Q Consensus 334 ~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~----------------------~ 385 (580)
+.+.+....-.. .....+..+. .|+.|+++.|.+............. .
T Consensus 177 ~~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 177 SFFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp CCCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ceEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 555554321111 1111222222 3788888877543221110000000 0
Q ss_pred HHHHhhcCCC--CCCCcEEEEeecCCCCC-CcchhcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCc
Q 036448 386 DEQLLKALQL--PLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGN 460 (580)
Q Consensus 386 ~~~~~~~l~~--~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~ 460 (580)
.......+.. +++|+.|++++|....+ |..+..+++|+.|+|++|......+ .+..++ |++|+++++. +..+..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 331 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYS 331 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCS
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCH
Confidence 0000011111 36788888888877655 5567788888888888885444333 367778 8888888753 222211
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCC
Q 036448 461 EFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTT 540 (580)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~ 540 (580)
..+..+++|+.|+++++ .+..+. +..+..+++|++|++++|. ++.++. ++
T Consensus 332 -------------------~~~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~ 381 (844)
T 3j0a_A 332 -------------------SNFYGLPKVAYIDLQKN-HIAIIQ-----DQTFKFLEKLQTLDLRDNA-LTTIHF----IP 381 (844)
T ss_dssp -------------------CSCSSCTTCCEEECCSC-CCCCCC-----SSCSCSCCCCCEEEEETCC-SCCCSS----CC
T ss_pred -------------------HHhcCCCCCCEEECCCC-CCCccC-----hhhhcCCCCCCEEECCCCC-CCcccC----CC
Confidence 12467889999988876 343332 3356778999999999876 777664 67
Q ss_pred CcceEEEecCc
Q 036448 541 TLQDLTIWKCA 551 (580)
Q Consensus 541 ~L~~L~i~~c~ 551 (580)
+|+.|++++|.
T Consensus 382 ~L~~L~l~~N~ 392 (844)
T 3j0a_A 382 SIPDIFLSGNK 392 (844)
T ss_dssp SCSEEEEESCC
T ss_pred CcchhccCCCC
Confidence 88888888875
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=203.90 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCceEEEEEEecCC-CcC-cccccCCCcccEEEeccCCccccccccee-------eecccccccccc-cchh--hccCCC
Q 036448 188 GDKVRHLGLNFQRG-TSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSIL-------SSFSSSKECIER-LPKT--LCELYN 255 (580)
Q Consensus 188 ~~~~~~L~l~~~~~-~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~-------L~l~~~~~~i~~-lp~~--i~~L~~ 255 (580)
..++++|++++|.. ..+ |..+.++++|++|++++|+.-.+....+. |+|++|. +.. +|.. ++++++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG--LSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC--CSSCCSTTCCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC--CCcccccCccccccCC
Confidence 45677777777633 334 55677777777777777765444332221 6777766 544 4444 667777
Q ss_pred ccEEeccCCcccccc--chhhhcccCCCeEEcCCCCCCccCcccCCCC--CCCCcCC
Q 036448 256 LQKLDIRRCRNLKEL--PAGIGKLKNMRSLLNGETDSLKYMPVGISKL--TSLRTLD 308 (580)
Q Consensus 256 L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L--~~L~~L~ 308 (580)
|++|+|++|. +..+ +..++++++|++|++++|......|..++.+ ++|+.|+
T Consensus 125 L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 125 LTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred CCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 7777777776 4333 2456777777777777764333344444444 4455444
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.9e-20 Score=190.60 Aligned_cols=313 Identities=14% Similarity=0.059 Sum_probs=183.8
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCccccccccee-------eeccccccccc-cc-chhhccCCCccEEeccC
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSIL-------SSFSSSKECIE-RL-PKTLCELYNLQKLDIRR 263 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~-------L~l~~~~~~i~-~l-p~~i~~L~~L~~L~L~~ 263 (580)
.++..++.+..+|. + .++|++|++++|.+-.+....+. |+++++. +. .+ |..+.++++|++|++++
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS--TTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCc--ccceECcccccccccCCEEeCCC
Confidence 46666777777887 3 37899999999976544332221 7777776 53 44 34577777777888777
Q ss_pred CccccccchhhhcccCCCeEEcCCCCCCccCccc--CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVG--ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|......|..++++++|++|++++|......|.. ++.+++|++|++...... ...+.. .+..+++|+.+.+...
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~--~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--KIQPAS--FFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC--SCCCCG--GGGGCTTCCEEECTTC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC--ccCccc--ccCCCCcccEEeCCCC
Confidence 7733334667777777888887777433334444 777777777774432221 111111 1445555555555442
Q ss_pred CCCCChhHHHhcccccc--cccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCC-CCcchh-
Q 036448 342 GNVLYLDEVERLQLYNQ--QNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNI-FPKWLT- 417 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~l~- 417 (580)
.- .......+..+ .+|+.|+++.+.+....... ........+...++|+.|++++|.... .|.++.
T Consensus 165 ~l----~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 165 KV----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW------LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CB----SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC------TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cc----cccChhhhhccccccccccccccCcccccchhh------ccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 11 11111122222 46666766666543221110 011122233345667777777765532 122222
Q ss_pred --------------------------------------cccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceE
Q 036448 418 --------------------------------------SLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKR 457 (580)
Q Consensus 418 --------------------------------------~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~ 457 (580)
..++|+.|++++|......| .++.++ |++|+++++. +..
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 313 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INK 313 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccc
Confidence 12466777777665444333 256667 7777777654 322
Q ss_pred eCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCC-CcCC
Q 036448 458 VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKAL-PDYL 536 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-p~~~ 536 (580)
+.. ..+..+++|+.|+++++ .+..+ .+..+..+++|++|++++|. ++.+ |..+
T Consensus 314 ~~~-------------------~~~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 367 (455)
T 3v47_A 314 IDD-------------------NAFWGLTHLLKLNLSQN-FLGSI-----DSRMFENLDKLEVLDLSYNH-IRALGDQSF 367 (455)
T ss_dssp ECT-------------------TTTTTCTTCCEEECCSS-CCCEE-----CGGGGTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cCh-------------------hHhcCcccCCEEECCCC-ccCCc-----ChhHhcCcccCCEEECCCCc-ccccChhhc
Confidence 211 12457899999999886 34333 23456789999999999987 5555 7788
Q ss_pred CCCCCcceEEEecCc
Q 036448 537 LQTTTLQDLTIWKCA 551 (580)
Q Consensus 537 ~~l~~L~~L~i~~c~ 551 (580)
..+++|++|++++|.
T Consensus 368 ~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 368 LGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc
Confidence 899999999999985
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.8e-20 Score=191.86 Aligned_cols=270 Identities=17% Similarity=0.102 Sum_probs=185.8
Q ss_pred cccccCCCcccEEEeccCCcccccccc-----eeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccC
Q 036448 205 PMSIRGLDRLRTLLIYDRSDFNLSLSS-----ILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKN 279 (580)
Q Consensus 205 ~~~~~~l~~Lr~L~l~~~~~l~l~~~~-----~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 279 (580)
+..+..+++|++|++++|..-.++... -.|+++++. ++.+| ++.+++|++|++++|. +..+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN--ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC--CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc--CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 446778999999999999765543211 128888888 88886 7888899999999887 77775 788889
Q ss_pred CCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhccccccc
Q 036448 280 MRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQ 359 (580)
Q Consensus 280 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~ 359 (580)
|++|++++| .+..+| ++.+++|++|++...... . + .+..++.|+.+.+......... .+..++
T Consensus 108 L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~--~-----l-~l~~l~~L~~L~l~~n~~~~~~------~~~~l~ 170 (457)
T 3bz5_A 108 LTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLT--E-----I-DVSHNTQLTELDCHLNKKITKL------DVTPQT 170 (457)
T ss_dssp CCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCS--C-----C-CCTTCTTCCEEECTTCSCCCCC------CCTTCT
T ss_pred CCEEECCCC-cCCeec--CCCCCcCCEEECCCCccc--e-----e-ccccCCcCCEEECCCCCccccc------ccccCC
Confidence 999999888 556665 788888888875432211 1 1 2556666777776654332221 366778
Q ss_pred ccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCC
Q 036448 360 NLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPL 439 (580)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l 439 (580)
+|+.|++++|.+.. + .+..+++|+.|++++|....++ +..+++|++|++++|. ++.+| +
T Consensus 171 ~L~~L~ls~n~l~~---------------l--~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip-~ 229 (457)
T 3bz5_A 171 QLTTLDCSFNKITE---------------L--DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEID-V 229 (457)
T ss_dssp TCCEEECCSSCCCC---------------C--CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-C
T ss_pred cCCEEECCCCccce---------------e--ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-ccccC-c
Confidence 89999998887421 1 1566788999999999887774 7788999999999885 44466 7
Q ss_pred CCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCc----------cccccccccccccccccccccc
Q 036448 440 GKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP----------KLKSLIIGAMEELEEWNYRITR 508 (580)
Q Consensus 440 ~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~L~~L~l~~~~~L~~~~~~~~~ 508 (580)
+.++ |+.|+++++. +..++ ...++ +|+.|+++++..+..++
T Consensus 230 ~~l~~L~~L~l~~N~-l~~~~----------------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----- 281 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNP-LTELD----------------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----- 281 (457)
T ss_dssp TTCTTCSEEECCSSC-CSCCC----------------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----
T ss_pred cccCCCCEEEeeCCc-CCCcC----------------------HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----
Confidence 8888 9999998753 32221 12344 44555555554443332
Q ss_pred ccccCCCCccceeeeccCCCCCCCCcC--------CCCCCCcceEEEecC
Q 036448 509 KENISIMPRLSSLEVRSCNKLKALPDY--------LLQTTTLQDLTIWKC 550 (580)
Q Consensus 509 ~~~~~~l~~L~~L~l~~c~~L~~lp~~--------~~~l~~L~~L~i~~c 550 (580)
.+.+++|+.|++++|+.++.+|.. +...++|++|++++|
T Consensus 282 ---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 282 ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp ---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred ---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 357899999999999988887753 223345555555444
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=8e-20 Score=179.73 Aligned_cols=133 Identities=12% Similarity=-0.011 Sum_probs=60.1
Q ss_pred CCCcEEEEeecCCCCCC-cchhcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCC
Q 036448 397 LSVEKLGIILYGGNIFP-KWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGP 473 (580)
Q Consensus 397 ~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 473 (580)
++|+.|++++|....++ ..+..+++|++|++++|......+ .+..++ |+.|+++++. +..++.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------- 258 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPA------------- 258 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT-------------
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecCh-------------
Confidence 45555555555554443 345555555555555553222221 244455 5555555432 222211
Q ss_pred CCCCCCCccccCccccccccccccccccccccccccc-ccCCCCccceeeeccCCCC--CCCCcCCCCCCCcceEEEecC
Q 036448 474 SSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKE-NISIMPRLSSLEVRSCNKL--KALPDYLLQTTTLQDLTIWKC 550 (580)
Q Consensus 474 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~L--~~lp~~~~~l~~L~~L~i~~c 550 (580)
.+..+++|+.|+++++ .++.++.....+. ....+++|+.|++++|+.. ...|..+..+++|+.+++++|
T Consensus 259 -------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 259 -------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred -------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 1234555666655553 2333322111110 0012456667777766622 223344556667777766665
Q ss_pred c
Q 036448 551 A 551 (580)
Q Consensus 551 ~ 551 (580)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 3
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.5e-20 Score=181.43 Aligned_cols=214 Identities=22% Similarity=0.306 Sum_probs=164.2
Q ss_pred CCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCC
Q 036448 211 LDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDS 290 (580)
Q Consensus 211 l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 290 (580)
..+++.|++++|. +..+|..++++++|++|++++|. +..+|..++++++|++|++++| .
T Consensus 80 ~~~l~~L~L~~n~-------------------l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~ 138 (328)
T 4fcg_A 80 QPGRVALELRSVP-------------------LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-P 138 (328)
T ss_dssp STTCCEEEEESSC-------------------CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-C
T ss_pred ccceeEEEccCCC-------------------chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-c
Confidence 4678888888876 88999999999999999999998 7799999999999999999999 5
Q ss_pred CccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeec
Q 036448 291 LKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGR 370 (580)
Q Consensus 291 ~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 370 (580)
+..+|..++++++|++|++..+.... ..+. .+ ...
T Consensus 139 l~~lp~~l~~l~~L~~L~L~~n~~~~-----------------------~~p~----------~~------~~~------ 173 (328)
T 4fcg_A 139 LRALPASIASLNRLRELSIRACPELT-----------------------ELPE----------PL------AST------ 173 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEEEETTCC-----------------------CCCS----------CS------EEE------
T ss_pred cccCcHHHhcCcCCCEEECCCCCCcc-----------------------ccCh----------hH------hhc------
Confidence 66888888888888888754322110 0000 00 000
Q ss_pred ccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCccccceecc
Q 036448 371 VVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLVII 450 (580)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~L~~L~l~ 450 (580)
.....+..+++|+.|++++|....+|.++..+++|++|++++|... .+|.
T Consensus 174 -----------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~------------ 223 (328)
T 4fcg_A 174 -----------------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP------------ 223 (328)
T ss_dssp -----------------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG------------
T ss_pred -----------------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch------------
Confidence 0112345678999999999999999999999999999999998543 2321
Q ss_pred cccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCC
Q 036448 451 HLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLK 530 (580)
Q Consensus 451 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 530 (580)
.+..+++|+.|+++++.....++ ..+..+++|++|++++|+.++
T Consensus 224 ------------------------------~l~~l~~L~~L~Ls~n~~~~~~p------~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 224 ------------------------------AIHHLPKLEELDLRGCTALRNYP------PIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ------------------------------GGGGCTTCCEEECTTCTTCCBCC------CCTTCCCCCCEEECTTCTTCC
T ss_pred ------------------------------hhccCCCCCEEECcCCcchhhhH------HHhcCCCCCCEEECCCCCchh
Confidence 02356677777777665444433 367789999999999999999
Q ss_pred CCCcCCCCCCCcceEEEecCcchHHH
Q 036448 531 ALPDYLLQTTTLQDLTIWKCALLENR 556 (580)
Q Consensus 531 ~lp~~~~~l~~L~~L~i~~c~~l~~~ 556 (580)
.+|..+..+++|++|++++|+.+...
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhc
Confidence 99999999999999999999866544
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.8e-19 Score=177.12 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=51.0
Q ss_pred eEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCccccc
Q 036448 191 VRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 191 ~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ 269 (580)
++.++++++.+..+|..+. +++++|++++|+ ++.+|. .++++++|++|++++|. +..
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-------------------i~~~~~~~~~~l~~L~~L~L~~n~-l~~ 90 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-------------------ITEIKDGDFKNLKNLHTLILINNK-ISK 90 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-------------------CCCBCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCc-------------------CCEeChhhhccCCCCCEEECCCCc-CCe
Confidence 4455555555555554432 455555555554 444443 45666666666666665 433
Q ss_pred c-chhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 270 L-PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 270 l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
+ |..++++++|++|++++| .+..+|..+. ++|++|+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 91 ISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred eCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 3 555666666666666666 3445555443 4555555
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.6e-20 Score=181.30 Aligned_cols=253 Identities=15% Similarity=0.084 Sum_probs=155.7
Q ss_pred CceEEEEEEecCCC---cCcccccCCCcccEEEecc-CCcccccccceeeecccccccccccchhhccCCCccEEeccCC
Q 036448 189 DKVRHLGLNFQRGT---SFPMSIRGLDRLRTLLIYD-RSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 189 ~~~~~L~l~~~~~~---~~~~~~~~l~~Lr~L~l~~-~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~ 264 (580)
.++++|+++++.+. .+|..+.++++|++|++++ |.. ...+|..++++++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l------------------~~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL------------------VGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE------------------ESCCCGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc------------------cccCChhHhcCCCCCEEECcCC
Confidence 68999999999998 4899999999999999995 653 4477888999999999999998
Q ss_pred ccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCC
Q 036448 265 RNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNV 344 (580)
Q Consensus 265 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~ 344 (580)
.....+|..++++++|++|++++|.....+|..++.+++|++|++...... +. ....+..+.
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~---~p~~l~~l~------------- 173 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--GA---IPDSYGSFS------------- 173 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--EE---CCGGGGCCC-------------
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc--Cc---CCHHHhhhh-------------
Confidence 844588888999999999999998544478888888888888875322111 01 111222222
Q ss_pred CChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC-CCCcchhcccCCc
Q 036448 345 LYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGN-IFPKWLTSLTNLR 423 (580)
Q Consensus 345 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~ 423 (580)
++|+.|+++.|.+. ...+..+..+. |+.|++++|... ..|..+..+++|+
T Consensus 174 --------------~~L~~L~L~~N~l~--------------~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 174 --------------KLFTSMTISRNRLT--------------GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp --------------TTCCEEECCSSEEE--------------EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred --------------hcCcEEECcCCeee--------------ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 13444444443311 01111222222 555555555543 2345555666666
Q ss_pred EEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccc
Q 036448 424 NLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEW 502 (580)
Q Consensus 424 ~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 502 (580)
.|++++|.....++.+..++ |++|+++++.--..++. .+..+++|+.|+++++.--..+
T Consensus 225 ~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--------------------~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--------------------GLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp EEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--------------------GGGGCTTCCEEECCSSEEEEEC
T ss_pred EEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--------------------HHhcCcCCCEEECcCCcccccC
Confidence 66666665444444555555 66666665431111111 1345666666666665333345
Q ss_pred ccccccccccCCCCccceeeeccCCCCCCCC
Q 036448 503 NYRITRKENISIMPRLSSLEVRSCNKLKALP 533 (580)
Q Consensus 503 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp 533 (580)
+. ...+++|+.|++++|+.+...|
T Consensus 285 p~-------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 285 PQ-------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CC-------STTGGGSCGGGTCSSSEEESTT
T ss_pred CC-------CccccccChHHhcCCCCccCCC
Confidence 54 1356677777777776555444
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=3.1e-19 Score=175.45 Aligned_cols=270 Identities=16% Similarity=0.155 Sum_probs=161.0
Q ss_pred CCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~ 264 (580)
.++.++.|+++++.+..++. .+.++++|++|++++|+ +..+ |..++++++|++|++++|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------------------ISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------------CCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-------------------CCeeCHHHhcCCCCCCEEECCCC
Confidence 46789999999999998766 68999999999999886 5555 777999999999999999
Q ss_pred ccccccchhhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCC
Q 036448 265 RNLKELPAGIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGN 343 (580)
Q Consensus 265 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~ 343 (580)
. +..+|..+. ++|++|++++|. +..++ ..++++++|++|++........ ......+..+
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l------------- 170 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGM------------- 170 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGGGGC-------------
T ss_pred c-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc---CcChhhccCC-------------
Confidence 8 888888765 799999999994 44544 4578889999888543221110 0111223333
Q ss_pred CCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-CcchhcccCC
Q 036448 344 VLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLTNL 422 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L 422 (580)
++|+.|+++.|.+... +.. .+++|+.|++++|....+ |.++..+++|
T Consensus 171 ---------------~~L~~L~l~~n~l~~l---------------~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 171 ---------------KKLSYIRIADTNITTI---------------PQG--LPPSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp ---------------TTCCEEECCSSCCCSC---------------CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred ---------------CCcCEEECCCCccccC---------------Ccc--ccccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 3444444444432110 001 114555566555555443 4455556666
Q ss_pred cEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccc
Q 036448 423 RNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELE 500 (580)
Q Consensus 423 ~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 500 (580)
++|++++|......+ .+..++ |++|+++++. +..++. .+..+++|+.|+++++ .++
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~--------------------~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPG--------------------GLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT--------------------TTTTCSSCCEEECCSS-CCC
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCCh--------------------hhccCCCcCEEECCCC-cCC
Confidence 666666553322222 244555 6666665542 222211 1335566666666654 333
Q ss_pred ccccccccc-cccCCCCccceeeeccCCCCC---CCCcCCCCCCCcceEEEecC
Q 036448 501 EWNYRITRK-ENISIMPRLSSLEVRSCNKLK---ALPDYLLQTTTLQDLTIWKC 550 (580)
Q Consensus 501 ~~~~~~~~~-~~~~~l~~L~~L~l~~c~~L~---~lp~~~~~l~~L~~L~i~~c 550 (580)
.++.....+ ......++|+.|++++++ +. ..|..+..+++|+.++++++
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 333211111 011235778888888877 43 23446666788888888775
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.5e-19 Score=176.21 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=179.0
Q ss_pred CCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~ 264 (580)
.++.++.|+++++.+..++ ..+.++++|++|++++|+ +..+ |..++++++|++|++++|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-------------------ISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------------CCEECGGGSTTCTTCCEEECCSS
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-------------------cCccCHhHhhCcCCCCEEECCCC
Confidence 3567888888888877764 467888888888887776 5555 566888888888888888
Q ss_pred ccccccchhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCC
Q 036448 265 RNLKELPAGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGN 343 (580)
Q Consensus 265 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~ 343 (580)
. +..+|..+. ++|++|++++| .+..+|. .++.+++|++|++........+..+..+ ..+ .|+.+.+....-
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF---DGL-KLNYLRISEAKL 184 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS---CSC-CCSCCBCCSSBC
T ss_pred c-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccc---cCC-ccCEEECcCCCC
Confidence 7 778887665 78888888888 4555655 4788888888875433222111112222 223 444444443211
Q ss_pred CCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc-chhcccCC
Q 036448 344 VLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK-WLTSLTNL 422 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L 422 (580)
..+. .. -.++|+.|++++|.+... .+..+..+++|+.|++++|....++. ++..+++|
T Consensus 185 -~~l~----~~--~~~~L~~L~l~~n~i~~~--------------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 185 -TGIP----KD--LPETLNELHLDHNKIQAI--------------ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp -SSCC----SS--SCSSCSCCBCCSSCCCCC--------------CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred -CccC----cc--ccCCCCEEECCCCcCCcc--------------CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 1100 01 126888899988874321 23456778899999999999887754 78899999
Q ss_pred cEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccc
Q 036448 423 RNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELE 500 (580)
Q Consensus 423 ~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 500 (580)
++|++++|. +..+|. +..++ |+.|+++++. +..++...+.... ....+++|+.|++.+++ +.
T Consensus 244 ~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-------------~~~~~~~l~~L~l~~N~-~~ 307 (332)
T 2ft3_A 244 RELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG-------------FGVKRAYYNGISLFNNP-VP 307 (332)
T ss_dssp CEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-------------CCSSSCCBSEEECCSSS-SC
T ss_pred CEEECCCCc-CeecChhhhcCccCCEEECCCCC-CCccChhHccccc-------------cccccccccceEeecCc-cc
Confidence 999999985 446654 77888 9999999754 5554433221100 01236789999988865 22
Q ss_pred ccccccccccccCCCCccceeeeccCC
Q 036448 501 EWNYRITRKENISIMPRLSSLEVRSCN 527 (580)
Q Consensus 501 ~~~~~~~~~~~~~~l~~L~~L~l~~c~ 527 (580)
.+ ...+..+..+++|+.|++++|.
T Consensus 308 ~~---~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YW---EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GG---GSCGGGGTTBCCSTTEEC----
T ss_pred cc---ccCcccccccchhhhhhccccc
Confidence 22 1234567789999999999875
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=2.2e-18 Score=176.10 Aligned_cols=301 Identities=19% Similarity=0.135 Sum_probs=188.4
Q ss_pred CCCceEEEEEEecCCCcCcccccCCCcccEEEeccCCccccccc--ce-eeecccccccccccchhhccCCCccEEeccC
Q 036448 187 FGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLS--SI-LSSFSSSKECIERLPKTLCELYNLQKLDIRR 263 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~--~~-~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~ 263 (580)
.+++++.|++++|.+..+|.. +++|++|++++|+.-.++.. .+ .|+++++. ++.+| +++++++|++|++++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~--l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ--LEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCS
T ss_pred CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCC--CCCCc-ccCCCCCCCEEECCC
Confidence 367899999999999988754 48899999999976554332 22 39999998 89999 599999999999999
Q ss_pred CccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCC
Q 036448 264 CRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGN 343 (580)
Q Consensus 264 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~ 343 (580)
|. +..+|..+ .+|++|++++| .+..+| .++.+++|++|++..+.... .+.. ...|+.+.+.+..-
T Consensus 163 N~-l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~---l~~~------~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 163 NS-LKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKK---LPDL------PLSLESIVAGNNIL 227 (454)
T ss_dssp SC-CSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSS---CCCC------CTTCCEEECCSSCC
T ss_pred Cc-CcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCc---CCCC------cCcccEEECcCCcC
Confidence 98 77788654 58999999999 667777 68999999999854322211 1111 13566666665321
Q ss_pred CCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCc
Q 036448 344 VLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLR 423 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~ 423 (580)
..+. .+..+++|+.|+++.|.+... + ..+++|+.|++++|....+|.. +++|+
T Consensus 228 -~~lp-----~~~~l~~L~~L~l~~N~l~~l---------------~---~~~~~L~~L~l~~N~l~~l~~~---~~~L~ 280 (454)
T 1jl5_A 228 -EELP-----ELQNLPFLTTIYADNNLLKTL---------------P---DLPPSLEALNVRDNYLTDLPEL---PQSLT 280 (454)
T ss_dssp -SSCC-----CCTTCTTCCEEECCSSCCSSC---------------C---SCCTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred -Cccc-----ccCCCCCCCEEECCCCcCCcc---------------c---ccccccCEEECCCCcccccCcc---cCcCC
Confidence 1111 266788999999998874321 1 1247899999999988888765 37889
Q ss_pred EEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccc
Q 036448 424 NLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEW 502 (580)
Q Consensus 424 ~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 502 (580)
+|++++|. +..++.+ .+ |+.|+++++. +..++........+...+...... + ..+++|+.|+++++ .++.+
T Consensus 281 ~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~l-p--~~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 281 FLDVSENI-FSGLSEL--PPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIEL-P--ALPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp EEECCSSC-CSEESCC--CTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCC-C--CCCTTCCEEECCSS-CCSCC
T ss_pred EEECcCCc-cCcccCc--CCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccc-c--ccCCcCCEEECCCC-ccccc
Confidence 99998884 3433322 24 7888877653 332221100111111111111111 1 13578888888775 34433
Q ss_pred ccccccccccCCCCccceeeeccCCCCC--CCCcCCCCC-------------CCcceEEEecCcc
Q 036448 503 NYRITRKENISIMPRLSSLEVRSCNKLK--ALPDYLLQT-------------TTLQDLTIWKCAL 552 (580)
Q Consensus 503 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~--~lp~~~~~l-------------~~L~~L~i~~c~~ 552 (580)
+. .+++|++|++++|+... .+|..+..+ ++|++|++++|+.
T Consensus 353 p~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 353 PE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred cc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 22 46888999998877433 466666655 7888888888763
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=4.3e-19 Score=192.40 Aligned_cols=248 Identities=17% Similarity=0.110 Sum_probs=162.8
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccce-------eeeccccccccccc-chhhccCCCccEEeccC
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERL-PKTLCELYNLQKLDIRR 263 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~ 263 (580)
+.++.+++.+..+|..+. +++++|++++|.+-.+....+ .|+++++. +..+ |..++++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCC
Confidence 357788888888888765 799999999997655544322 29999998 7777 55689999999999999
Q ss_pred Cccccccch-hhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELPA-GIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|. +..+|. .++++++|++|++++|. +..+| ..++++++|++|++..+... .. ....+.++++|+.+.+...
T Consensus 83 n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~---~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 83 NE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS--ST---KLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS--CC---CCCSSSCCTTCCEEECCSS
T ss_pred Cc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccc--cc---CchhhcccccCCEEEccCC
Confidence 98 888887 58999999999999994 55555 56999999999986543221 11 1233455666777776653
Q ss_pred CCCCChhHHHhcccccccccceeEEEeecccCCchhHHhh--------------hhhhHHHHhhcCCCCCCCcEEEEeec
Q 036448 342 GNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRR--------------KKEKDEQLLKALQLPLSVEKLGIILY 407 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (580)
.- ..... .......+++|+.|+++.|.+.......... ...........+ ..++|+.|+++++
T Consensus 156 ~l-~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n 232 (680)
T 1ziw_A 156 KI-QALKS-EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNS 232 (680)
T ss_dssp CC-CCBCH-HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTS
T ss_pred cc-cccCH-HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCC
Confidence 21 11111 1112234578888888877643321110000 000001111111 2378888888888
Q ss_pred CCCCC-CcchhcccC--CcEEEEcCCCCCCCCC-CCCCcc-ccceeccccc
Q 036448 408 GGNIF-PKWLTSLTN--LRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 408 ~~~~l-p~~l~~l~~--L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~ 453 (580)
..... |.++..++. |+.|++++|......+ .++.++ |++|+++++.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 77554 566766654 9999999885444332 367788 9999988764
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=179.19 Aligned_cols=256 Identities=17% Similarity=0.154 Sum_probs=152.5
Q ss_pred CCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 265 (580)
++++++|+++++.+..+|. .+.++++|++|++++|+ ++.++ ..++++++|++|++++|.
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-------------------INTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-------------------CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-------------------cCccCHhhcCCCCCCCEEECCCCc
Confidence 4567777777777666554 56667777777766664 44443 346777777777777776
Q ss_pred cccccchh-hhcccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 266 NLKELPAG-IGKLKNMRSLLNGETDSLKYMPV--GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 266 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
+..+|.. ++++++|++|++++| .+..+|. .++.+++|++|++..+...
T Consensus 112 -l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------------------- 162 (353)
T 2z80_A 112 -LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF--------------------------- 162 (353)
T ss_dssp -CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC---------------------------
T ss_pred -CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc---------------------------
Confidence 6666655 667777777777777 4555555 4666666666664322100
Q ss_pred CCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchh-cccC
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLT-SLTN 421 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~-~l~~ 421 (580)
.......+.++++|+.|+++.|.+. ...+..+..+++|+.|++++|....+|..+. .+++
T Consensus 163 -----~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 163 -----TKIQRKDFAGLTFLEELEIDASDLQ--------------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223 (353)
T ss_dssp -----CEECTTTTTTCCEEEEEEEEETTCC--------------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTT
T ss_pred -----cccCHHHccCCCCCCEEECCCCCcC--------------ccCHHHHhccccCCeecCCCCccccchhhhhhhccc
Confidence 0001123445567777777776522 1123455667778888888877766665543 5788
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccc
Q 036448 422 LRNLYLRSCVKCEHLPPLGKLPLEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEE 501 (580)
Q Consensus 422 L~~L~L~~~~~l~~l~~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 501 (580)
|+.|++++|.... ++. ..++ . ....+.++.+++.++ .+..
T Consensus 224 L~~L~L~~n~l~~-~~~-~~l~--~-----------------------------------~~~~~~l~~l~L~~~-~l~~ 263 (353)
T 2z80_A 224 VECLELRDTDLDT-FHF-SELS--T-----------------------------------GETNSLIKKFTFRNV-KITD 263 (353)
T ss_dssp EEEEEEESCBCTT-CCC-C-------------------------------------------CCCCCCEEEEESC-BCCH
T ss_pred ccEEECCCCcccc-ccc-cccc--c-----------------------------------ccccchhhccccccc-cccC
Confidence 8888888774322 211 0000 0 011222333333322 1111
Q ss_pred cccccccccccCCCCccceeeeccCCCCCCCCcCC-CCCCCcceEEEecCcc
Q 036448 502 WNYRITRKENISIMPRLSSLEVRSCNKLKALPDYL-LQTTTLQDLTIWKCAL 552 (580)
Q Consensus 502 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~-~~l~~L~~L~i~~c~~ 552 (580)
.... ..+..+..+++|++|++++|. ++.+|..+ ..+++|++|++++|+.
T Consensus 264 ~~l~-~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 264 ESLF-QVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHH-HHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchh-hhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 1100 112345688999999999986 88999875 7899999999999863
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=192.14 Aligned_cols=345 Identities=17% Similarity=0.137 Sum_probs=213.0
Q ss_pred cCCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccce-------eeecccccccccccc-hhhccCCCc
Q 036448 186 SFGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLP-KTLCELYNL 256 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp-~~i~~L~~L 256 (580)
..+..+++|++++|.+..++ ..+.++++|++|++++|+.-.+....+ .|+++++. +..+| ..|+++++|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CCccCHhhhcCcccc
Confidence 45778999999999998864 478999999999999997655543322 29999999 88887 568999999
Q ss_pred cEEeccCCccccccch-hhhcccCCCeEEcCCCCCCc-cCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcC-
Q 036448 257 QKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETDSLK-YMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLV- 333 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L- 333 (580)
++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++... ......+..+..+.+|+.+
T Consensus 103 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS--CCCEECGGGGHHHHTCTTCC
T ss_pred ccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC--ccceecHHHccchhccchhh
Confidence 999999998 777775 68999999999999994333 47889999999999985432 2212223345555555322
Q ss_pred CceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHH----------------------------hhh---
Q 036448 334 RECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEER----------------------------RRK--- 382 (580)
Q Consensus 334 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----------------------------~~~--- 382 (580)
..+.+.... +.......+.. .+|+.|+++.+.......... ...
T Consensus 180 ~~L~l~~n~----l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 180 LSLDLSLNP----MNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CEEECTTCC----CCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhcccCCCC----ceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 334443321 11111112222 256666665542110000000 000
Q ss_pred -------------hhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-cccee
Q 036448 383 -------------KEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLV 448 (580)
Q Consensus 383 -------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~ 448 (580)
.......+..+..+++|+.|++.++....+|.++..+ +|++|++++|.. ..+|. ..++ |+.|+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~-~~l~~L~~L~ 331 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPT-LKLKSLKRLT 331 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCB-CBCSSCCEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCc-ccccccCEEe
Confidence 0011122344556788999999998888889888888 899999988854 35555 4667 77777
Q ss_pred cccccCceEeCcc-ccCCCCCCCCCCCCCCC---CCccccCcccccccccccccccccccccccccccCCCCccceeeec
Q 036448 449 IIHLKSVKRVGNE-FLGIEESSEDGPSSSSS---SPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVR 524 (580)
Q Consensus 449 l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~ 524 (580)
+.++......+.. +.....+...+...... ...+..+++|+.|+++++. +..++. .+..+++|++|+++
T Consensus 332 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS------NFLGLEQLEHLDFQ 404 (570)
T ss_dssp EESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEE------EEETCTTCCEEECT
T ss_pred CcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccc------cccccCCCCEEEcc
Confidence 7765422111110 00000000000000000 1123456677777666652 222221 36678999999999
Q ss_pred cCCCCCCC-C-cCCCCCCCcceEEEecCc
Q 036448 525 SCNKLKAL-P-DYLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 525 ~c~~L~~l-p-~~~~~l~~L~~L~i~~c~ 551 (580)
+|. +..+ | ..+..+++|++|++++|.
T Consensus 405 ~n~-l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 405 HSN-LKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp TSE-EESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CCc-cccccchhhhhcCCCCCEEeCcCCc
Confidence 987 5544 3 356789999999999885
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3e-18 Score=180.50 Aligned_cols=257 Identities=19% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.++.|+++++.+..+|..+. ++|++|++++|. ++.+|. .+++|++|+|++|. +..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-------------------l~~lp~---~l~~L~~L~Ls~N~-l~~ 95 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-------------------LTSLPA---LPPELRTLEVSGNQ-LTS 95 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-------------------CSCCCC---CCTTCCEEEECSCC-CSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC-------------------CCCCCC---cCCCCCEEEcCCCc-CCc
Confidence 35667777777776666554 667777776665 444443 34445555555554 444
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhH
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDE 349 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~ 349 (580)
+|. .+++|++|++++| .+..+|. .+++|+.|++..+... ..+.. +++|+.+.+....- ..+.
T Consensus 96 lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~---~lp~~------l~~L~~L~Ls~N~l-~~l~- 157 (622)
T 3g06_A 96 LPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLT---SLPVL------PPGLQELSVSDNQL-ASLP- 157 (622)
T ss_dssp CCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCS---CCCCC------CTTCCEEECCSSCC-SCCC-
T ss_pred CCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCC---cCCCC------CCCCCEEECcCCcC-CCcC-
Confidence 444 4445555555554 3344443 3344444442211100 00100 12333333332210 0000
Q ss_pred HHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcC
Q 036448 350 VERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRS 429 (580)
Q Consensus 350 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 429 (580)
....+|+.|+++.|.+.. ++ ..+++|+.|++++|....+|.. +++|+.|++++
T Consensus 158 ------~~~~~L~~L~L~~N~l~~---------------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~ 210 (622)
T 3g06_A 158 ------ALPSELCKLWAYNNQLTS---------------LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYN 210 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSC---------------CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred ------CccCCCCEEECCCCCCCC---------------Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcC
Confidence 123466677776665321 11 3457888888888888777753 47888888888
Q ss_pred CCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccccccccccccccccccccccc
Q 036448 430 CVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITR 508 (580)
Q Consensus 430 ~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 508 (580)
| .+..+|. .++ |+.|+++++. +..++ ..+++|+.|+++++ .++.++.
T Consensus 211 N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp-----------------------~~l~~L~~L~Ls~N-~L~~lp~---- 258 (622)
T 3g06_A 211 N-RLTSLPA--LPSGLKELIVSGNR-LTSLP-----------------------VLPSELKELMVSGN-RLTSLPM---- 258 (622)
T ss_dssp S-CCSSCCC--CCTTCCEEECCSSC-CSCCC-----------------------CCCTTCCEEECCSS-CCSCCCC----
T ss_pred C-cccccCC--CCCCCCEEEccCCc-cCcCC-----------------------CCCCcCcEEECCCC-CCCcCCc----
Confidence 7 3455554 246 8888888652 33222 25678899988886 4554433
Q ss_pred ccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcchH
Q 036448 509 KENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCALLE 554 (580)
Q Consensus 509 ~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~ 554 (580)
.+++|+.|++++|. ++.+|..+.++++|+.|++++|+.-.
T Consensus 259 -----~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 -----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -----CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -----ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCC
Confidence 56889999999976 88999988899999999999987543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=8.8e-19 Score=170.24 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=57.8
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCcccccc-
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKEL- 270 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l- 270 (580)
.++..++.++.+|..+. ++|++|++++|+ ++.+|.. +.++++|++|++++|. +..+
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-------------------l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~ 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK-------------------LQSLPHGVFDKLTQLTKLSLSSNG-LSFKG 68 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC-------------------CCCCCTTTTTTCTTCSEEECCSSC-CCEEE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc-------------------cCccCHhHhhccccCCEEECCCCc-cCccc
Confidence 45555556666665442 566666666664 5566654 4667777777777766 4433
Q ss_pred --chhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 271 --PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 271 --p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
|..+..+++|++|++++| .+..+|..+..+++|++|+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred CcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEE
Confidence 455666777777777776 4555666666666666665
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4e-19 Score=172.85 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=175.0
Q ss_pred CCceEEEEEEe-cCCC-cCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNF-QRGT-SFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~-~~~~-~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
...+++|++++ +.+. .+|..+.++++|++|++++|++ ...+|..++++++|++|++++|.
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------------------~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV------------------SGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC------------------EEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee------------------CCcCCHHHhCCCCCCEEeCCCCc
Confidence 57899999995 7766 4888999999999999999873 33788889999999999999998
Q ss_pred cccccchhhhcccCCCeEEcCCCCCCccCcccCCCCC-CCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCC
Q 036448 266 NLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLT-SLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNV 344 (580)
Q Consensus 266 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~ 344 (580)
....+|..++.+++|++|++++|.....+|..++.++ +|++|++... ...+..+ ..+..++ |+.+.+...
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~---~~~~~l~-L~~L~Ls~N--- 207 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIP---PTFANLN-LAFVDLSRN--- 207 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECC---GGGGGCC-CSEEECCSS---
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCC---hHHhCCc-ccEEECcCC---
Confidence 4448899999999999999999955458899999998 9999985432 2211122 2334444 666666542
Q ss_pred CChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC-CCCcchhcccCCc
Q 036448 345 LYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGN-IFPKWLTSLTNLR 423 (580)
Q Consensus 345 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~ 423 (580)
.+.......+..+++|+.|+++.|.+.. ....+..+++|+.|++++|... .+|.++..+++|+
T Consensus 208 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 208 -MLEGDASVLFGSDKNTQKIHLAKNSLAF---------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp -EEEECCGGGCCTTSCCSEEECCSSEECC---------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred -cccCcCCHHHhcCCCCCEEECCCCceee---------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 1222234457788999999999987421 1223667899999999999996 7899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCcc-ccceecccccCc
Q 036448 424 NLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSV 455 (580)
Q Consensus 424 ~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l 455 (580)
+|++++|...+.+|..+.++ |+.|++.+.+.+
T Consensus 272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred EEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 99999997777888888899 999999986544
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.1e-17 Score=180.07 Aligned_cols=122 Identities=22% Similarity=0.206 Sum_probs=99.0
Q ss_pred cCCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCccccccccee-------eecccccccccccchh-hccCCCc
Q 036448 186 SFGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSIL-------SSFSSSKECIERLPKT-LCELYNL 256 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~-------L~l~~~~~~i~~lp~~-i~~L~~L 256 (580)
..+..+++|++++|.++.+| .+|.++++|++|++++|++-.++...+. |+|++|. ++.+|.. |.++++|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--CCCCCHHHhcCCCCC
Confidence 34678999999999999976 4689999999999999976666543322 8999998 9999865 7899999
Q ss_pred cEEeccCCccccccch-hhhcccCCCeEEcCCCCCCc-cCcccCCCCCCCCcCCce
Q 036448 257 QKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETDSLK-YMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 257 ~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~~~ 310 (580)
++|++++|. +..+|+ .++++++|++|++++|.... ..|..++.+++|++|++.
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 999999998 777775 48899999999999984322 356778889999988753
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.1e-18 Score=178.40 Aligned_cols=263 Identities=16% Similarity=0.083 Sum_probs=139.3
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccc----------------c----ceeeecccccccccccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSL----------------S----SILSSFSSSKECIERLP 247 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~----------------~----~~~L~l~~~~~~i~~lp 247 (580)
...++.++++++.+..+|.+++++++|++|++++|+...... + -..|+++++. ++.+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~--l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG--LSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC--CSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc--cccCC
Confidence 467899999999998899999999999999999884321100 0 0126777777 77776
Q ss_pred hhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhh
Q 036448 248 KTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESL 327 (580)
Q Consensus 248 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 327 (580)
.. .++|++|++++|. +..+|.. +++|++|++++| .+..+|.. .++|++|++..+... .+..+
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~-------~lp~~ 149 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLE-------KLPEL 149 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCS-------SCCCC
T ss_pred CC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCC-------CCccc
Confidence 52 3567777777776 6667653 367777777777 44444432 156777764322111 12235
Q ss_pred hcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeec
Q 036448 328 KNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILY 407 (580)
Q Consensus 328 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (580)
..++.|+.+.+.+..- ..+. ....+|+.|+++.|.+.. ...+..+++|+.|++++|
T Consensus 150 ~~l~~L~~L~l~~N~l-~~lp-------~~~~~L~~L~L~~n~l~~----------------l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSL-KKLP-------DLPPSLEFIAAGNNQLEE----------------LPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCTTCCEEECCSSCC-SCCC-------CCCTTCCEEECCSSCCSS----------------CCCCTTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCcC-cccC-------CCcccccEEECcCCcCCc----------------CccccCCCCCCEEECCCC
Confidence 5566666666654321 1111 012477777777776321 124666778888888888
Q ss_pred CCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCc
Q 036448 408 GGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP 486 (580)
Q Consensus 408 ~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (580)
....+|... ++|++|++++|. +..+|.++.++ |++|+++++. +..++ ..++
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~l~-----------------------~~~~ 257 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNNI-LEELPELQNLPFLTTIYADNNL-LKTLP-----------------------DLPP 257 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCC-----------------------SCCT
T ss_pred cCCcCCCCc---CcccEEECcCCc-CCcccccCCCCCCCEEECCCCc-CCccc-----------------------cccc
Confidence 777766543 578888888774 44677777777 8888887642 22111 1346
Q ss_pred ccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCC
Q 036448 487 KLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALP 533 (580)
Q Consensus 487 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp 533 (580)
+|+.|+++++ .++.++. .+++|++|++++|. ++.+|
T Consensus 258 ~L~~L~l~~N-~l~~l~~---------~~~~L~~L~ls~N~-l~~l~ 293 (454)
T 1jl5_A 258 SLEALNVRDN-YLTDLPE---------LPQSLTFLDVSENI-FSGLS 293 (454)
T ss_dssp TCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSC-CSEES
T ss_pred ccCEEECCCC-cccccCc---------ccCcCCEEECcCCc-cCccc
Confidence 7777777765 2333322 23566777776655 54443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=4e-17 Score=166.95 Aligned_cols=240 Identities=18% Similarity=0.212 Sum_probs=145.9
Q ss_pred eEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccCCccccc
Q 036448 191 VRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 191 ~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.+.++..+..+..+|..+. ++++.|++++|+ +..++ ..+.++++|++|+|++|. +..
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-------------------i~~~~~~~~~~l~~L~~L~Ls~n~-i~~ 102 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-------------------IQIIKVNSFKHLRHLEILQLSRNH-IRT 102 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-------------------CCEECTTTTSSCSSCCEEECCSSC-CCE
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-------------------CCeeCHHHhhCCCCCCEEECCCCc-CCc
Confidence 3456666677777777654 677888777775 55554 457888888888888887 555
Q ss_pred cc-hhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 270 LP-AGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 270 lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
++ ..+.++++|++|++++| .+..+|. .+..+++|++|++...... .
T Consensus 103 i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~----------~--------------------- 150 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIE----------S--------------------- 150 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCC----------E---------------------
T ss_pred cChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCccc----------c---------------------
Confidence 54 56777888888888888 5556655 4777777777764211100 0
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCC-cchhcccCCcEEE
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLY 426 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~ 426 (580)
.....+.++++|+.|+++.+. ....+| ..+..+++|++|+
T Consensus 151 --~~~~~~~~l~~L~~L~l~~~~-------------------------------------~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 151 --IPSYAFNRIPSLRRLDLGELK-------------------------------------RLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp --ECTTTTTTCTTCCEEECCCCT-------------------------------------TCCEECTTTTTTCSSCCEEE
T ss_pred --cCHHHhhhCcccCEeCCCCCC-------------------------------------CcceeCcchhhcccccCeec
Confidence 000112233344444443322 112222 2345566666666
Q ss_pred EcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccc
Q 036448 427 LRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYR 505 (580)
Q Consensus 427 L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 505 (580)
+++| .++.+|.+..++ |+.|+++++. +..+... .+..+++|+.|+++++ .++.+
T Consensus 192 L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------------~~~~l~~L~~L~L~~n-~l~~~--- 246 (440)
T 3zyj_A 192 LAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPG-------------------SFQGLMHLQKLWMIQS-QIQVI--- 246 (440)
T ss_dssp CTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTT-------------------TTTTCTTCCEEECTTC-CCCEE---
T ss_pred CCCC-cCccccccCCCcccCEEECCCCc-cCccChh-------------------hhccCccCCEEECCCC-ceeEE---
Confidence 6666 344556666666 6666666542 3333211 1346777777777664 23332
Q ss_pred cccccccCCCCccceeeeccCCCCCCCCcC-CCCCCCcceEEEecCc
Q 036448 506 ITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTTTLQDLTIWKCA 551 (580)
Q Consensus 506 ~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~i~~c~ 551 (580)
.+..+..+++|+.|++++|. ++.+|.. +..+++|+.|+++++|
T Consensus 247 --~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 --ERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --ChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 23356678899999999876 7777764 4678899999998876
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.2e-17 Score=167.38 Aligned_cols=240 Identities=20% Similarity=0.242 Sum_probs=143.9
Q ss_pred eEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCccccc
Q 036448 191 VRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 191 ~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.+.++..+..+..+|..+. +++++|++++|+ +..+ |..++++++|++|+|++|. +..
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-------------------i~~~~~~~~~~l~~L~~L~Ls~n~-i~~ 113 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-------------------IQMIQADTFRHLHHLEVLQLGRNS-IRQ 113 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-------------------CCEECTTTTTTCTTCCEEECCSSC-CCE
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-------------------CceECHHHcCCCCCCCEEECCCCc-cCC
Confidence 3456666666777776553 577787777775 5544 4557788888888888887 544
Q ss_pred cc-hhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 270 LP-AGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 270 lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
++ ..+.++++|++|++++| .+..+|.. ++.+++|++|++...... .
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~----------~--------------------- 161 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE----------S--------------------- 161 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCC----------E---------------------
T ss_pred cChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcc----------e---------------------
Confidence 44 56777888888888887 45555554 677777777764211100 0
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCC-cchhcccCCcEEE
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLY 426 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~ 426 (580)
.....+.++++|+.|+++.+. ....+| ..+..+++|++|+
T Consensus 162 --~~~~~~~~l~~L~~L~l~~~~-------------------------------------~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 162 --IPSYAFNRVPSLMRLDLGELK-------------------------------------KLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp --ECTTTTTTCTTCCEEECCCCT-------------------------------------TCCEECTTTTTTCTTCCEEE
T ss_pred --eCHhHHhcCCcccEEeCCCCC-------------------------------------CccccChhhccCCCCCCEEE
Confidence 000112233344444443322 111222 2344566666666
Q ss_pred EcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccc
Q 036448 427 LRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYR 505 (580)
Q Consensus 427 L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 505 (580)
+++| .+..+|.+..++ |+.|+++++. +..+... .+..+++|+.|+++++ .+..+
T Consensus 203 L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------------~~~~l~~L~~L~L~~n-~l~~~--- 257 (452)
T 3zyi_A 203 LGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPG-------------------SFHGLSSLKKLWVMNS-QVSLI--- 257 (452)
T ss_dssp CTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGG-------------------GGTTCTTCCEEECTTS-CCCEE---
T ss_pred CCCC-cccccccccccccccEEECcCCc-CcccCcc-------------------cccCccCCCEEEeCCC-cCceE---
Confidence 6665 344555566666 6666666543 2222211 1346778888877765 23322
Q ss_pred cccccccCCCCccceeeeccCCCCCCCCcC-CCCCCCcceEEEecCc
Q 036448 506 ITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQTTTLQDLTIWKCA 551 (580)
Q Consensus 506 ~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L~i~~c~ 551 (580)
.+..+..+++|+.|++++|. ++.+|.. +..+++|++|++++||
T Consensus 258 --~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 --ERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 23356778999999999876 7787764 5678999999998876
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=2.7e-17 Score=176.89 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccce-------eeecccccccccccchh-hccCCCccE
Q 036448 188 GDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSI-------LSSFSSSKECIERLPKT-LCELYNLQK 258 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~-------~L~l~~~~~~i~~lp~~-i~~L~~L~~ 258 (580)
..++++|++++|.+..+|+ ++.++++|++|++++|+.-.++...+ .|++++|. ++.+|.. |+++++|++
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~--l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKE 152 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC--CCCSTTCCCTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc--CCCCChhhhhcCcccCe
Confidence 4689999999999998755 68999999999999997666554332 29999999 9999865 899999999
Q ss_pred EeccCCcccc--ccchhhhcccCCCeEEcCCCC
Q 036448 259 LDIRRCRNLK--ELPAGIGKLKNMRSLLNGETD 289 (580)
Q Consensus 259 L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 289 (580)
|++++|. +. .+|..++.+++|++|++++|.
T Consensus 153 L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 153 LNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred eccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 9999998 54 467888999999999999984
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=8.4e-20 Score=188.48 Aligned_cols=328 Identities=16% Similarity=0.059 Sum_probs=208.1
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCcccc---------cc--cce-eeeccccccccc-----c
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNL---------SL--SSI-LSSFSSSKECIE-----R 245 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l---------~~--~~~-~L~l~~~~~~i~-----~ 245 (580)
.+++++|+++++.+.. ++..+..+++|++|++++|++-+. .. +.+ .|+++++. ++ .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGGGHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC--CCHHHHHH
Confidence 4578889999888773 566778889999999998864321 10 013 38888887 66 5
Q ss_pred cchhhccCCCccEEeccCCcccc-ccchhhhc-----ccCCCeEEcCCCCCCc----cCcccCCCCCCCCcCCceeecCc
Q 036448 246 LPKTLCELYNLQKLDIRRCRNLK-ELPAGIGK-----LKNMRSLLNGETDSLK----YMPVGISKLTSLRTLDKFVVGGG 315 (580)
Q Consensus 246 lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~-----l~~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~~~~~~~~ 315 (580)
+|..+.++++|++|++++|. +. .-+..+.. .++|++|++++|.... .++..+..+++|++|++..+...
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 68888899999999999988 43 22333332 4679999999984332 23555677889999885433211
Q ss_pred cCCCCccChhhhh-----cCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHh
Q 036448 316 VDGSNTCRLESLK-----NLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLL 390 (580)
Q Consensus 316 ~~~~~~~~l~~L~-----~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (580)
...+..+. .+..|+.+.+.++.-...........+..+++|+.|+++.|.+.+. ....+.
T Consensus 184 -----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~----------~~~~l~ 248 (461)
T 1z7x_W 184 -----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----------GMAELC 248 (461)
T ss_dssp -----HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH----------HHHHHH
T ss_pred -----hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH----------HHHHHH
Confidence 11122222 2457777777765322211112233456789999999998873210 111222
Q ss_pred h-cCCCCCCCcEEEEeecCCCC-----CCcchhcccCCcEEEEcCCCCCCC----CCC--CCCcc-ccceecccccCceE
Q 036448 391 K-ALQLPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSCVKCEH----LPP--LGKLP-LEKLVIIHLKSVKR 457 (580)
Q Consensus 391 ~-~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~l~~----l~~--l~~l~-L~~L~l~~~~~l~~ 457 (580)
. ....+++|+.|++++|.... ++..+..+++|++|++++|..... +.. ....+ |++|++++|. +..
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 327 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTA 327 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-Cch
Confidence 2 23457899999999998866 677777899999999999853211 110 12236 9999999875 221
Q ss_pred eCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccC-CCCccceeeeccCCCCC-----C
Q 036448 458 VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENIS-IMPRLSSLEVRSCNKLK-----A 531 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~L~-----~ 531 (580)
.+.... ...+..+++|+.|+++++ .+......... ..+. ..++|++|++++|. ++ .
T Consensus 328 ~~~~~l---------------~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-i~~~~~~~ 389 (461)
T 1z7x_W 328 ACCSHF---------------SSVLAQNRFLLELQISNN-RLEDAGVRELC-QGLGQPGSVLRVLWLADCD-VSDSSCSS 389 (461)
T ss_dssp GGHHHH---------------HHHHHHCSSCCEEECCSS-BCHHHHHHHHH-HHHTSTTCCCCEEECTTSC-CCHHHHHH
T ss_pred HHHHHH---------------HHHHhhCCCccEEEccCC-ccccccHHHHH-HHHcCCCCceEEEECCCCC-CChhhHHH
Confidence 110000 001345689999999887 34432211000 0111 26799999999987 66 6
Q ss_pred CCcCCCCCCCcceEEEecCcc
Q 036448 532 LPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 532 lp~~~~~l~~L~~L~i~~c~~ 552 (580)
+|..+..+++|++|++++|+-
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHhCCCccEEECCCCCC
Confidence 787777789999999999864
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.4e-17 Score=161.76 Aligned_cols=227 Identities=16% Similarity=0.056 Sum_probs=144.5
Q ss_pred cCCCceEEEEEEecCCCcCccc-ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCC
Q 036448 186 SFGDKVRHLGLNFQRGTSFPMS-IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~ 264 (580)
..+.++++|+++++.+..+|.. +.++++|++|++++|++-. +...|..+..+++|++|++++|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------------~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF----------------KGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE----------------EEEEEHHHHSCSCCCEEECCSC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc----------------ccCcccccccccccCEEECCCC
Confidence 3467899999999999998876 6899999999999986321 1222445556666666666666
Q ss_pred ccccccchhhhcccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 265 RNLKELPAGIGKLKNMRSLLNGETDSLKYMPV--GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 265 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
. +..+|..+..+++|++|++++| .+..++. .+..+++|++|++..+... .. ....+..++.|+.+.+.+..
T Consensus 89 ~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~---~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR--VA---FNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE--EC---STTTTTTCTTCCEEECTTCE
T ss_pred c-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC--cc---chhhcccCcCCCEEECCCCc
Confidence 5 5556666666666666666666 3444432 4566666666653222111 01 11123334444444443311
Q ss_pred CCCChhH-HHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc-chhccc
Q 036448 343 NVLYLDE-VERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK-WLTSLT 420 (580)
Q Consensus 343 ~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~ 420 (580)
+.. .....+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|....++. .+..++
T Consensus 162 ----l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 162 ----FQENFLPDIFTELRNLTFLDLSQCQLE--------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp ----EGGGEECSCCTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ----cccccchhHHhhCcCCCEEECCCCCcC--------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 111 12234666788888888887632 1223456678899999999998877754 677899
Q ss_pred CCcEEEEcCCCCCCCCC-CCCCcc--ccceeccccc
Q 036448 421 NLRNLYLRSCVKCEHLP-PLGKLP--LEKLVIIHLK 453 (580)
Q Consensus 421 ~L~~L~L~~~~~l~~l~-~l~~l~--L~~L~l~~~~ 453 (580)
+|++|++++|......+ .+..+| |++|++++++
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999996555443 356664 8999998754
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.7e-17 Score=159.31 Aligned_cols=203 Identities=19% Similarity=0.162 Sum_probs=112.6
Q ss_pred CCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~ 264 (580)
.+.++++|+++++.+..++ ..+..+++|++|++++|. +..+ |..++.+++|++|++++|
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-------------------LARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------------CCEECTTTTTTCTTCCEEECCSC
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-------------------cceeCHhhcCCccCCCEEeCCCC
Confidence 3567777777777777655 356777777777777765 4554 556777788888888877
Q ss_pred cccccc-chhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCC
Q 036448 265 RNLKEL-PAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGN 343 (580)
Q Consensus 265 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~ 343 (580)
..+..+ |..+..+++|++|++++|......|..+..+++|++|++...... ... ...+..+++|+.+.+.+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~---~~~~~~l~~L~~L~l~~n~- 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALP---DDTFRDLGNLTHLFLHGNR- 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCC---TTTTTTCTTCCEEECCSSC-
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc--ccC---HhHhccCCCccEEECCCCc-
Confidence 645555 556777888888888877433333555777777777774322111 111 1113334444444444321
Q ss_pred CCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc-chhcccCC
Q 036448 344 VLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK-WLTSLTNL 422 (580)
Q Consensus 344 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L 422 (580)
+.......+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|....+|. .+..+++|
T Consensus 165 ---l~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 165 ---ISSVPERAFRGLHSLDRLLLHQNRVA--------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ---ccccCHHHhcCccccCEEECCCCccc--------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 11111222444555555555555421 1112334445555555555555555542 34455555
Q ss_pred cEEEEcCCC
Q 036448 423 RNLYLRSCV 431 (580)
Q Consensus 423 ~~L~L~~~~ 431 (580)
++|++++|+
T Consensus 228 ~~L~l~~N~ 236 (285)
T 1ozn_A 228 QYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC
T ss_pred CEEeccCCC
Confidence 555555553
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1.2e-18 Score=169.99 Aligned_cols=249 Identities=14% Similarity=0.089 Sum_probs=129.3
Q ss_pred ccccchh-hccCCCccEEeccCCccccccc-hhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCC
Q 036448 243 IERLPKT-LCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSN 320 (580)
Q Consensus 243 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~ 320 (580)
+...+.. +..+++|++|++++|. +..++ ..++++++|++|++++| .+...++ +..+++|++|++..+
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n-------- 90 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-------- 90 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSS--------
T ss_pred hhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCC--------
Confidence 4444443 3456688888888887 55554 57888888888888888 4444444 788888888874321
Q ss_pred ccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCc
Q 036448 321 TCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVE 400 (580)
Q Consensus 321 ~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (580)
.+..+...+.|+.+.+....- .. .....+++|+.|+++.|.+.. .....+..+++|+
T Consensus 91 --~l~~l~~~~~L~~L~l~~n~l----~~---~~~~~~~~L~~L~l~~N~l~~--------------~~~~~~~~l~~L~ 147 (317)
T 3o53_A 91 --YVQELLVGPSIETLHAANNNI----SR---VSCSRGQGKKNIYLANNKITM--------------LRDLDEGCRSRVQ 147 (317)
T ss_dssp --EEEEEEECTTCCEEECCSSCC----SE---EEECCCSSCEEEECCSSCCCS--------------GGGBCTGGGSSEE
T ss_pred --ccccccCCCCcCEEECCCCcc----CC---cCccccCCCCEEECCCCCCCC--------------ccchhhhccCCCC
Confidence 122333334455544443211 00 111224556666666555221 1122334455666
Q ss_pred EEEEeecCCCCC-Ccch-hcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCC
Q 036448 401 KLGIILYGGNIF-PKWL-TSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSS 477 (580)
Q Consensus 401 ~L~l~~~~~~~l-p~~l-~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 477 (580)
.|++++|....+ |..+ ..+++|++|++++|. ++.++....++ |++|+++++. +..++..
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---------------- 209 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPE---------------- 209 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSC-CCEECGG----------------
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCc-CCcchhh----------------
Confidence 666666655443 2333 245666666666653 33334444455 6666665532 3333221
Q ss_pred CCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCC-CCCCcCCCCCCCcceEEEecCcchH
Q 036448 478 SSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKL-KALPDYLLQTTTLQDLTIWKCALLE 554 (580)
Q Consensus 478 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~lp~~~~~l~~L~~L~i~~c~~l~ 554 (580)
+..+++|+.|+++++ .++.++. .+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.++
T Consensus 210 ----~~~l~~L~~L~L~~N-~l~~l~~------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 210 ----FQSAAGVTWISLRNN-KLVLIEK------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ----GGGGTTCSEEECTTS-CCCEECT------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----hcccCcccEEECcCC-cccchhh------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 234555555555554 3333222 3445555666666555522 2344444455555555555544443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.6e-15 Score=159.77 Aligned_cols=237 Identities=18% Similarity=0.089 Sum_probs=154.2
Q ss_pred CCCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcc
Q 036448 187 FGDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
.+++++.|++++|.+..+|. .+++|++|++++|+ ++.+|. .+++|++|++++|.
T Consensus 59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-------------------l~~lp~---~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-------------------LTSLPV---LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-------------------CSCCCC---CCTTCCEEEECSCC-
T ss_pred hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-------------------CCcCCC---CCCCCCEEECcCCc-
Confidence 35799999999999998887 57899999999987 556665 56677777777776
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
+..+|. .+++|++|++++| .+..+|.. +++|++|++..+.... .+. .+..|+.+.+....- ..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~---l~~------~~~~L~~L~L~~N~l-~~ 175 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLAS---LPA------LPSELCKLWAYNNQL-TS 175 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC---CCC------CCTTCCEEECCSSCC-SC
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCC---cCC------ccCCCCEEECCCCCC-CC
Confidence 666665 5566777777776 45556654 3666666643221111 111 122333333333111 11
Q ss_pred hhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEE
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLY 426 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~ 426 (580)
+. ..+++|+.|+++.|.+... + ..+++|+.|++.+|....+|.. +++|+.|+
T Consensus 176 l~-------~~~~~L~~L~Ls~N~l~~l---------------~---~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~ 227 (622)
T 3g06_A 176 LP-------MLPSGLQELSVSDNQLASL---------------P---TLPSELYKLWAYNNRLTSLPAL---PSGLKELI 227 (622)
T ss_dssp CC-------CCCTTCCEEECCSSCCSCC---------------C---CCCTTCCEEECCSSCCSSCCCC---CTTCCEEE
T ss_pred Cc-------ccCCCCcEEECCCCCCCCC---------------C---CccchhhEEECcCCcccccCCC---CCCCCEEE
Confidence 11 2357788888888763211 1 1347888888888888887753 47889999
Q ss_pred EcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccc
Q 036448 427 LRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYR 505 (580)
Q Consensus 427 L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 505 (580)
+++| .++.+| ..++ |+.|+++++. +..++. .+++|+.|+++++ .++.++
T Consensus 228 Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~-----------------------~~~~L~~L~Ls~N-~L~~lp-- 277 (622)
T 3g06_A 228 VSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM-----------------------LPSGLLSLSVYRN-QLTRLP-- 277 (622)
T ss_dssp CCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-----------------------CCTTCCEEECCSS-CCCSCC--
T ss_pred ccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc-----------------------ccccCcEEeCCCC-CCCcCC--
Confidence 9888 455566 4557 8888888752 332221 4578888888876 455443
Q ss_pred cccccccCCCCccceeeeccCCC
Q 036448 506 ITRKENISIMPRLSSLEVRSCNK 528 (580)
Q Consensus 506 ~~~~~~~~~l~~L~~L~l~~c~~ 528 (580)
..+..+++|+.|++++|+.
T Consensus 278 ----~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 278 ----ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ----GGGGGSCTTCEEECCSCCC
T ss_pred ----HHHhhccccCEEEecCCCC
Confidence 3567888999999998873
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=5.7e-17 Score=167.34 Aligned_cols=59 Identities=17% Similarity=0.009 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEEeecCCCCC-Ccchh-cccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccc
Q 036448 393 LQLPLSVEKLGIILYGGNIF-PKWLT-SLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~l-p~~l~-~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~ 452 (580)
+..+++|+.|++++|....+ |..+. .+++|+.|+|++|. +..++....++ |+.|+++++
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCC
Confidence 33455666666666655442 44444 56667777776663 33344444555 666666653
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=1.1e-16 Score=164.29 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=139.2
Q ss_pred cCCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccC
Q 036448 186 SFGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRR 263 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~ 263 (580)
..+..++.|++++|.+..+ |..+.++++|++|++++|+ +..++ ..+.++++|++|+|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------------i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-------------------IRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-------------------CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-------------------cCCcChhhccCcccCCEEECCC
Confidence 3467899999999999886 6679999999999999987 44443 4466667777777777
Q ss_pred Cccccccchh-hhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|. +..+|.. +..+++|++|++++| .+..+|. .+.++++|+.|++..+.... ......+..+++|+.+.+...
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEECTTS
T ss_pred Cc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEECCCC
Confidence 66 5555543 556677777777766 3444443 46666666666643221111 111122344455555555442
Q ss_pred CCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-Ccchhccc
Q 036448 342 GNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLT 420 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~ 420 (580)
.- ... ..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|....+ |..+..++
T Consensus 207 ~l-~~~-----~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 207 NI-KDM-----PNLTPLVGLEELEMSGNHFP--------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp CC-SSC-----CCCTTCTTCCEEECTTSCCS--------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cc-ccc-----ccccccccccEEECcCCcCc--------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 11 111 12556677788887777632 12234566677888888888777655 55667788
Q ss_pred CCcEEEEcCCCCCCCCCC--CCCcc-ccceecccc
Q 036448 421 NLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHL 452 (580)
Q Consensus 421 ~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~ 452 (580)
+|+.|+|++|. +..++. +..++ |+.|+++++
T Consensus 267 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 267 SLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 88888888874 444443 45677 888888764
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=163.76 Aligned_cols=222 Identities=19% Similarity=0.187 Sum_probs=141.2
Q ss_pred cCCCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccC
Q 036448 186 SFGDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRR 263 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~ 263 (580)
..+..++.|++++|.+..++ ..+.++++|++|++++|. +..++ ..+.++++|++|+|++
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------------i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-------------------IRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-------------------CCEECGGGGTTCSSCCEEECCS
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-------------------CCccChhhccCCccCCEEECCC
Confidence 44688999999999998865 678999999999999987 44444 3466677777777777
Q ss_pred Cccccccch-hhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|++|++..+.... ......+..+++|+.+.+.+.
T Consensus 122 n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 122 NR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp SC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCSSCCEEECTTS
T ss_pred Cc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchhhcccccCeecCCCC
Confidence 65 555554 4666777777777776 3444443 46666777766643221111 111122344555555555443
Q ss_pred CCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-Ccchhccc
Q 036448 342 GNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLT 420 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~ 420 (580)
.- ..+ ..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|....+ |..+..++
T Consensus 196 ~l-~~~-----~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 196 NL-REI-----PNLTPLIKLDELDLSGNHLS--------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp CC-SSC-----CCCTTCSSCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cC-ccc-----cccCCCcccCEEECCCCccC--------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 11 111 12556677888888777632 12234566778888888888877665 45566788
Q ss_pred CCcEEEEcCCCCCCCCCC--CCCcc-ccceeccccc
Q 036448 421 NLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 421 ~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~ 453 (580)
+|+.|+|++|. ++.++. +..++ |+.|++++++
T Consensus 256 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 88888888874 344443 56677 8888887643
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=4.6e-17 Score=158.32 Aligned_cols=232 Identities=15% Similarity=0.104 Sum_probs=129.5
Q ss_pred ccchhhccCCCccEEeccCCcc-ccccchhhh-------cccCCCeEEcCCCCCCccCcccC--CCCCCCCcCCceeecC
Q 036448 245 RLPKTLCELYNLQKLDIRRCRN-LKELPAGIG-------KLKNMRSLLNGETDSLKYMPVGI--SKLTSLRTLDKFVVGG 314 (580)
Q Consensus 245 ~lp~~i~~L~~L~~L~L~~~~~-l~~lp~~i~-------~l~~L~~L~l~~~~~~~~lp~~i--~~L~~L~~L~~~~~~~ 314 (580)
.+|..+... |++|++++|.. -..+|..+. ++++|++|++++|.....+|..+ +.+++|++|++...
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-- 131 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-- 131 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC--
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC--
Confidence 556655544 66667766652 124555554 56677777777764434566654 66677777664322
Q ss_pred ccCCCCccChhhhhcC--CcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhc
Q 036448 315 GVDGSNTCRLESLKNL--QLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKA 392 (580)
Q Consensus 315 ~~~~~~~~~l~~L~~L--~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (580)
..... +..+..+... ++|+.+.+.+.. +.......+.++++|+.|+++.|.+. .....+..
T Consensus 132 ~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~ 194 (312)
T 1wwl_A 132 SWATR-DAWLAELQQWLKPGLKVLSIAQAH----SLNFSCEQVRVFPALSTLDLSDNPEL------------GERGLISA 194 (312)
T ss_dssp BCSSS-SSHHHHHHTTCCTTCCEEEEESCS----CCCCCTTTCCCCSSCCEEECCSCTTC------------HHHHHHHH
T ss_pred CCcch-hHHHHHHHHhhcCCCcEEEeeCCC----CccchHHHhccCCCCCEEECCCCCcC------------cchHHHHH
Confidence 22111 2223333211 445555555421 11222234566777888888777521 11112333
Q ss_pred C--CCCCCCcEEEEeecCCCCCCc---c-hhcccCCcEEEEcCCCCCCCC--CCCCCccccceecccccCceEeCccccC
Q 036448 393 L--QLPLSVEKLGIILYGGNIFPK---W-LTSLTNLRNLYLRSCVKCEHL--PPLGKLPLEKLVIIHLKSVKRVGNEFLG 464 (580)
Q Consensus 393 l--~~~~~L~~L~l~~~~~~~lp~---~-l~~l~~L~~L~L~~~~~l~~l--~~l~~l~L~~L~l~~~~~l~~~~~~~~~ 464 (580)
+ ..+++|+.|++++|....+|. . +..+++|++|++++|...... +.+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------ 250 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD------------------------ 250 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC------------------------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh------------------------
Confidence 3 667788888888887764432 2 236678888888887543322 1222
Q ss_pred CCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcce
Q 036448 465 IEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQD 544 (580)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~ 544 (580)
.+++|+.|+++++ .++.++. .+. ++|++|++++|. ++.+|. +..+++|++
T Consensus 251 -------------------~l~~L~~L~Ls~N-~l~~ip~------~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 251 -------------------WPSQLNSLNLSFT-GLKQVPK------GLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGN 300 (312)
T ss_dssp -------------------CCTTCCEEECTTS-CCSSCCS------SCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEE
T ss_pred -------------------hcCCCCEEECCCC-ccChhhh------hcc--CCceEEECCCCC-CCCChh-HhhCCCCCE
Confidence 3345555555443 2332222 222 788888888866 777776 777888888
Q ss_pred EEEecCc
Q 036448 545 LTIWKCA 551 (580)
Q Consensus 545 L~i~~c~ 551 (580)
|++++++
T Consensus 301 L~L~~N~ 307 (312)
T 1wwl_A 301 LSLKGNP 307 (312)
T ss_dssp EECTTCT
T ss_pred EeccCCC
Confidence 8888875
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=2e-17 Score=161.32 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
.+++++|++++|.+..++ ..+..+++|++|++++|+ +..+++ +..+++|++|++++|.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------------l~~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------------------LYETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-------------------CEEEEE-ETTCTTCCEEECCSSE-
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-------------------CCcchh-hhhcCCCCEEECcCCc-
Confidence 456778888888777754 467778888888777775 444443 6677777777777776
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
+..+|. .++|++|++++| .+..++.. .+++|++|++
T Consensus 92 l~~l~~----~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l 127 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYL 127 (317)
T ss_dssp EEEEEE----CTTCCEEECCSS-CCSEEEEC--CCSSCEEEEC
T ss_pred cccccC----CCCcCEEECCCC-ccCCcCcc--ccCCCCEEEC
Confidence 555542 367777777777 34444332 2455666653
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.6e-18 Score=177.28 Aligned_cols=213 Identities=15% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCceEEEEEEecCCCcCc--ccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSFP--MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
++++++|+++++.+...+ ..+..+++|++|++++|++-+.. ...+|..+..+++|++|++++|.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--------------~~~l~~~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--------------CKDISSALRVNPALAELNLRSNE 67 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH--------------HHHHHHHHHTCTTCCEEECTTCC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH--------------HHHHHHHHHhCCCcCEEeCCCCc
Confidence 567899999999887633 23678899999999999742211 23455556666666666666665
Q ss_pred cccc-cchhhhc-cc----CCCeEEcCCCCCCc----cCcccCCCCCCCCcCCceeecCccCCCCccChhhh-----hcC
Q 036448 266 NLKE-LPAGIGK-LK----NMRSLLNGETDSLK----YMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESL-----KNL 330 (580)
Q Consensus 266 ~l~~-lp~~i~~-l~----~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L-----~~L 330 (580)
+.. .+..+.. ++ +|++|++++|.... .+|..+..+++|++|++..+... ...+..+ ...
T Consensus 68 -l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-----~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 68 -LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-----DAGLQLLCEGLLDPQ 141 (461)
T ss_dssp -CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH-----HHHHHHHHHHHTSTT
T ss_pred -CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc-----hHHHHHHHHHHhcCC
Confidence 322 2222322 33 46666666663221 34555666666666664322111 0011111 113
Q ss_pred CcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCC-CCCCCcEEEEeecCC
Q 036448 331 QLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQ-LPLSVEKLGIILYGG 409 (580)
Q Consensus 331 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 409 (580)
.+|+.+.+..+.-...........+..+++|+.|++++|.+.+. ....+...+. ..++|+.|++++|..
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~----------~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA----------GVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH----------HHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH----------HHHHHHHHHhcCCCCceEEEccCCCC
Confidence 34555555443211111111122344456666666666652110 0111111111 234566666666655
Q ss_pred CC-----CCcchhcccCCcEEEEcCC
Q 036448 410 NI-----FPKWLTSLTNLRNLYLRSC 430 (580)
Q Consensus 410 ~~-----lp~~l~~l~~L~~L~L~~~ 430 (580)
.. ++..+..+++|++|++++|
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC
Confidence 43 3444555566666666655
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.5e-15 Score=141.49 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=42.3
Q ss_pred cccccccccccccccccccccccccccCCC-CccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcch
Q 036448 486 PKLKSLIIGAMEELEEWNYRITRKENISIM-PRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCALL 553 (580)
Q Consensus 486 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l 553 (580)
++|+.|++++++.++.++. ..+..+ ++|+.|++++|+ ++.+|.. .+++|+.|++.+++.+
T Consensus 179 ~~L~~L~L~~n~~l~~i~~-----~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDK-----DAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CEEEEEECTTCTTCCEECT-----TTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCCEEEcCCCCCcccCCH-----HHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCccCC
Confidence 5677777776654554432 245567 899999999966 8888876 5889999999888653
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=3.1e-16 Score=150.52 Aligned_cols=216 Identities=19% Similarity=0.157 Sum_probs=161.4
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.++..++.+..+|..+ .++|++|++++|+ ++.+|. .+.++++|++|++++|. +..+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-------------------i~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 71 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-------------------ISHVPAASFRACRNLTILWLHSNV-LARI 71 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-------------------CCEECTTTTTTCTTCCEEECCSSC-CCEE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-------------------CCccCHHHcccCCCCCEEECCCCc-ccee
Confidence 56778888888888755 5789999998886 677764 58999999999999998 6555
Q ss_pred -chhhhcccCCCeEEcCCCCCCccC-cccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChh
Q 036448 271 -PAGIGKLKNMRSLLNGETDSLKYM-PVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLD 348 (580)
Q Consensus 271 -p~~i~~l~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~ 348 (580)
|..++.+++|++|++++|..+..+ |..+..+++|++|++...... ... ...+..+++|+.+.+.+.. +.
T Consensus 72 ~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~---~~~~~~l~~L~~L~l~~n~----l~ 142 (285)
T 1ozn_A 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELG---PGLFRGLAALQYLYLQDNA----LQ 142 (285)
T ss_dssp CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC--CCC---TTTTTTCTTCCEEECCSSC----CC
T ss_pred CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC--EEC---HhHhhCCcCCCEEECCCCc----cc
Confidence 778999999999999999646666 667999999999985433222 111 2335566677777776532 12
Q ss_pred HHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCC-CcchhcccCCcEEEE
Q 036448 349 EVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIF-PKWLTSLTNLRNLYL 427 (580)
Q Consensus 349 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L 427 (580)
......+..+++|+.|+++.|.+... ....+..+++|+.|++++|....+ |.++..+++|+.|++
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGNRISSV--------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEE--------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCHhHhccCCCccEEECCCCccccc--------------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 22233467789999999998874311 123466789999999999988766 788889999999999
Q ss_pred cCCCCCCCCCC--CCCcc-ccceeccccc
Q 036448 428 RSCVKCEHLPP--LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 428 ~~~~~l~~l~~--l~~l~-L~~L~l~~~~ 453 (580)
++|.. ..++. +..++ |+.|++++++
T Consensus 209 ~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 209 FANNL-SALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCC-SCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCcC-CcCCHHHcccCcccCEEeccCCC
Confidence 99854 44443 67788 9999998754
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.65 E-value=1.8e-16 Score=183.89 Aligned_cols=142 Identities=22% Similarity=0.347 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhccc----ccc----cccchhHHHhhhcCCCCcch
Q 036448 11 RENLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKV----EEI----GQGLLAPLLLSYNDLPSNSM 82 (580)
Q Consensus 11 ~~~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~----~~~----~~~~~~~l~~sy~~L~~~~~ 82 (580)
.+++++++++|+++|+|+||||+++|+.|+.+. ..|+..++...... ... ...+..++.+||+.|+. +
T Consensus 303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~ 378 (1249)
T 3sfz_A 303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--D 378 (1249)
T ss_dssp STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--T
T ss_pred hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--H
Confidence 456677899999999999999999999998875 46887776532211 111 13478899999999999 8
Q ss_pred hhhhhhhccccCCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEecHHHHHH
Q 036448 83 VKQCFSYCAVFPKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMHDIVHDF 162 (580)
Q Consensus 83 ~k~~fl~~~~f~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~~~ 162 (580)
+|.||+|||+||+++.|+++.+++.|.++ ++.++.++++|++++|++... ++...+|+|||++|++
T Consensus 379 ~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDF 444 (1249)
T ss_dssp THHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHH
T ss_pred HHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHH
Confidence 89999999999999999999999999654 466789999999999998654 3445579999999999
Q ss_pred HHHhhhcc
Q 036448 163 AQFVSRKE 170 (580)
Q Consensus 163 ~~~i~~~e 170 (580)
++..+.++
T Consensus 445 ~~~~~~~~ 452 (1249)
T 3sfz_A 445 LTEKNRSQ 452 (1249)
T ss_dssp HHHHTGGG
T ss_pred HHhhhhHH
Confidence 99987765
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=153.76 Aligned_cols=225 Identities=16% Similarity=0.082 Sum_probs=164.3
Q ss_pred CCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 265 (580)
..+++.|++++|.+..+ |..+.++++|++|++++|+ ++.+|.. ++++++|++|++++|.
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-------------------LSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-------------------CSSCCHHHHTTCTTCSEEECTTCC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-------------------CCcCCHhHhCCCccCCEEECCCCC
Confidence 57899999999999886 4569999999999999886 7788876 8899999999999998
Q ss_pred cccccch--hhhcccCCCeEEcCCCCCCccC-cccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCC
Q 036448 266 NLKELPA--GIGKLKNMRSLLNGETDSLKYM-PVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLG 342 (580)
Q Consensus 266 ~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~ 342 (580)
+..+|. .++++++|++|++++|..+..+ |..++.+++|++|++..+... ......+..+++|+.+.+....
T Consensus 136 -l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 136 -YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----SYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp -CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTTTTTCSEEEEEEEECSC
T ss_pred -CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----ccCHHHHhccccCCeecCCCCc
Confidence 778887 6888999999999998656655 456889999999986543322 1123445566777777777643
Q ss_pred CCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC-----CCCcchh
Q 036448 343 NVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGN-----IFPKWLT 417 (580)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~lp~~l~ 417 (580)
+.......+..+++|+.|+++.|.+...... ..........++.+++.++... .+|.++.
T Consensus 210 ----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 210 ----HILLLEIFVDVTSSVECLELRDTDLDTFHFS-----------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp ----STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred ----cccchhhhhhhcccccEEECCCCcccccccc-----------ccccccccchhhccccccccccCcchhhhHHHHh
Confidence 2223333345678999999999885432211 1112234567788888777654 3677888
Q ss_pred cccCCcEEEEcCCCCCCCCCC--CCCcc-ccceeccccc
Q 036448 418 SLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 418 ~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~ 453 (580)
.+++|++|++++|. ++.+|. +..++ |++|++++++
T Consensus 275 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 275 QISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 99999999999985 446665 47788 9999998753
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=6.3e-17 Score=157.36 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=102.5
Q ss_pred ccCCCccEEeccCCccccccchhhhcc-----cCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChh
Q 036448 251 CELYNLQKLDIRRCRNLKELPAGIGKL-----KNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLE 325 (580)
Q Consensus 251 ~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~ 325 (580)
+.+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.+++|++|++....... . .....
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~-~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--E-RGLIS 193 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH--H-HHHHH
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc--c-hHHHH
Confidence 455555555555554 44345444444 555555555552222222445555555555432111000 0 00011
Q ss_pred hh--hcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEE
Q 036448 326 SL--KNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLG 403 (580)
Q Consensus 326 ~L--~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 403 (580)
.+ ..+++|+.+.+.+.. +..........+..+++|+.|+++.|.+.... ....+..+++|+.|+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA-------------GAPSCDWPSQLNSLN 259 (312)
T ss_dssp HSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------------CCSCCCCCTTCCEEE
T ss_pred HHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------------chhhhhhcCCCCEEE
Confidence 11 344444444444321 12222333333456788999999888743211 012344578999999
Q ss_pred EeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccc
Q 036448 404 IILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 404 l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~ 452 (580)
+++|....+|.++. ++|++|++++|. ++.+|.+..++ |++|++++.
T Consensus 260 Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 260 LSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred CCCCccChhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence 99999999998886 899999999984 55567788899 999999874
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2e-15 Score=146.17 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=55.4
Q ss_pred cCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCC
Q 036448 209 RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 209 ~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 38 ~~l~~L~~L~l~~~~-------------------i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-------------------VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTCCEEECTTSC-------------------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC
T ss_pred HHcCCcCEEEeeCCC-------------------ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC
Confidence 346677777777765 66666 47788888888888887 777777 888888888888888
Q ss_pred CCCccCcccCCCCCCCCcCC
Q 036448 289 DSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 289 ~~~~~lp~~i~~L~~L~~L~ 308 (580)
.+..+| .+..+++|++|+
T Consensus 96 -~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 96 -PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp -CCSCCG-GGTTCTTCCEEE
T ss_pred -cCCCch-hhcCCCCCCEEE
Confidence 455554 466666666665
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.3e-15 Score=147.54 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=136.3
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
.+++++|++.++.+..++ .+..+++|++|++++|+ +..+|. +..+++|++|++++|. +
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-------------------i~~~~~-~~~l~~L~~L~L~~n~-l 97 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-------------------ITDLAP-LKNLTKITELELSGNP-L 97 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------------CCCCGG-GTTCCSCCEEECCSCC-C
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-------------------CCCChh-HccCCCCCEEEccCCc-C
Confidence 468899999999998877 68899999999999886 777777 9999999999999998 8
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
..+| .++.+++|++|++++| .+..+|. +..+++|++|++..+... .+..+.
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~-------~~~~l~------------------- 148 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQIT-------NISPLA------------------- 148 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCC-------CCGGGG-------------------
T ss_pred CCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccC-------cCcccc-------------------
Confidence 8777 5999999999999999 5666665 888888888875322111 111133
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEE
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYL 427 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 427 (580)
.+++|+.|+++.|.+... ..+..+++|+.|++++|....+|. +..+++|++|++
T Consensus 149 ---------~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 202 (308)
T 1h6u_A 149 ---------GLTNLQYLSIGNAQVSDL----------------TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHL 202 (308)
T ss_dssp ---------GCTTCCEEECCSSCCCCC----------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred ---------CCCCccEEEccCCcCCCC----------------hhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEc
Confidence 344555555555542210 114556777777777777766664 667788888888
Q ss_pred cCCCCCCCCCCCCCcc-ccceeccccc
Q 036448 428 RSCVKCEHLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 428 ~~~~~l~~l~~l~~l~-L~~L~l~~~~ 453 (580)
++|. +..++++..++ |+.|+++++.
T Consensus 203 ~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 203 KNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred cCCc-cCccccccCCCCCCEEEccCCe
Confidence 8773 44555577777 8888877654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5.5e-15 Score=141.67 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCCcEEEEeecCCCCCC-cchhcccCCcEEEEcCCCCCCCCCCCCCccccceecccccCceEeCccccCCCCCCCCCC
Q 036448 395 LPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLYLRSCVKCEHLPPLGKLPLEKLVIIHLKSVKRVGNEFLGIEESSEDGP 473 (580)
Q Consensus 395 ~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 473 (580)
.+++|+.|++++|....+| ..+..+++|++|++++|. ++.+|. .
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~----------------------~------------ 142 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPP----------------------G------------ 142 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCT----------------------T------------
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccCh----------------------h------------
Confidence 3445555555555555554 445666777777777663 233332 0
Q ss_pred CCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEecCcc
Q 036448 474 SSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWKCAL 552 (580)
Q Consensus 474 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~c~~ 552 (580)
.+..+++|+.|+++++ .++.++. ..+..+++|+.|++++|. ++.+|..+...++|+.|+++++|-
T Consensus 143 -------~~~~l~~L~~L~L~~N-~l~~l~~-----~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 143 -------LLTPTPKLEKLSLANN-NLTELPA-----GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -------TTTTCTTCCEEECTTS-CCSCCCT-----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -------hcccccCCCEEECCCC-cCCccCH-----HHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 0224455555555543 2333222 234578899999999876 889999888888999999987663
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=5.7e-15 Score=140.90 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred ecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCccccccch-hhh
Q 036448 198 FQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLKELPA-GIG 275 (580)
Q Consensus 198 ~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 275 (580)
+..+..+|..+. ++|++|++++|+ ++.+|. .+.++++|++|++++|. +..+|. .+.
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 73 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNP-------------------LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ 73 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCC-------------------CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTT
T ss_pred CCCccccCCCCC--CCccEEECCCCc-------------------ccccCHhHhccccCCcEEECCCCc-CCccCHHHcc
Confidence 334444565443 467777776665 555554 57777778888888776 555543 567
Q ss_pred cccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 276 KLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 276 ~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
++++|++|++++|......|..+..+++|++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 777888888877733333334566666666665
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=8.6e-17 Score=158.47 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=114.6
Q ss_pred ceEEEEEEecCCCcCcccccCC--CcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGL--DRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..++++++++.+. +..+..+ ++++.|++.+|. +...+..+.++++|++|++++|...
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~-------------------l~~~~~~~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF-------------------MDQPLAEHFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE-------------------ECSCCCSCCCCBCCCEEECTTCEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc-------------------ccccchhhccCCCCCEEEccCCCcC
Confidence 3456777766654 4445555 677777777664 5555555777888888888888722
Q ss_pred cc-cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 268 KE-LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 268 ~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
.. +|..+..+++|++|++++|......|..++.+++|++|++..+.... ...+
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~----~~~l---------------------- 160 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS----EFAL---------------------- 160 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC----HHHH----------------------
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC----HHHH----------------------
Confidence 23 77777888888888888885444556667777777777643221100 0001
Q ss_pred hhHHHhcccccccccceeEEEee-cccCCchhHHhhhhhhHHHHhhcCCCCC-CCcEEEEeecCC----CCCCcchhccc
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFG-RVVDGEDEERRRKKEKDEQLLKALQLPL-SVEKLGIILYGG----NIFPKWLTSLT 420 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~----~~lp~~l~~l~ 420 (580)
...+..+++|+.|++++| .+. ...+...+..++ +|+.|++++|.. ..+|..+..++
T Consensus 161 -----~~~~~~~~~L~~L~l~~~~~l~-------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 161 -----QTLLSSCSRLDELNLSWCFDFT-------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp -----HHHHHHCTTCCEEECCCCTTCC-------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred -----HHHHhcCCCCCEEcCCCCCCcC-------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 111233445555555555 311 011222333445 666666666632 23455556677
Q ss_pred CCcEEEEcCCCCCC--CCCCCCCcc-ccceeccccc
Q 036448 421 NLRNLYLRSCVKCE--HLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 421 ~L~~L~L~~~~~l~--~l~~l~~l~-L~~L~l~~~~ 453 (580)
+|++|++++|..++ .++.+..++ |++|++++|.
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77777777775433 233455556 6666666654
No 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.59 E-value=8.3e-16 Score=164.01 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=96.0
Q ss_pred cCCchHHHHHHHHHhcCCC-CHHHHHHHHhhhhcccccccccchhHHHhhhcCCCCcchh-hhhhhhccccCCCcccCHH
Q 036448 25 CKGLPLAAKVIGNLLRSKS-TGKEWQRILESEMWKVEEIGQGLLAPLLLSYNDLPSNSMV-KQCFSYCAVFPKNYNMNKE 102 (580)
Q Consensus 25 c~GlPLai~~ig~~L~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~-k~~fl~~~~f~~~~~i~~~ 102 (580)
|+|+||||+++|+.|+.+. +.++|+.+ ....+...+.+||+.||+ +. |.||+|||+||+++.|+++
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~e 390 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTI 390 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHH
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHH
Confidence 9999999999999999874 67889653 124588999999999999 77 9999999999999999999
Q ss_pred HHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEecHHHHHHH
Q 036448 103 ELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMHDIVHDFA 163 (580)
Q Consensus 103 ~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~~~~ 163 (580)
.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++
T Consensus 391 lLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 391 LLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 9999999887 134788999999999999731 224689999999865
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=7.3e-15 Score=145.17 Aligned_cols=228 Identities=16% Similarity=0.136 Sum_probs=121.3
Q ss_pred ccccchhhccCCCccEEeccCCccccccchh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCC
Q 036448 243 IERLPKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSN 320 (580)
Q Consensus 243 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~ 320 (580)
++++|..+ ..++++|+|++|. ++.+|.+ +.++++|++|++++|...+.+|.+ +.++++|+++..... +....
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~-N~l~~-- 94 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA-NNLLY-- 94 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE-TTCCE--
T ss_pred CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC-Ccccc--
Confidence 78888766 3678899999887 8888864 688999999999988655666653 566777665432111 11100
Q ss_pred ccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCc
Q 036448 321 TCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVE 400 (580)
Q Consensus 321 ~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (580)
+....+..+++|+.|+++.|.+..... .......++.
T Consensus 95 -----------------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~--------------~~~~~~~~l~ 131 (350)
T 4ay9_X 95 -----------------------------INPEAFQNLPNLQYLLISNTGIKHLPD--------------VHKIHSLQKV 131 (350)
T ss_dssp -----------------------------ECTTSBCCCTTCCEEEEEEECCSSCCC--------------CTTCCBSSCE
T ss_pred -----------------------------cCchhhhhccccccccccccccccCCc--------------hhhcccchhh
Confidence 001123344455555555554221110 0111223344
Q ss_pred EEEEeec-CCCCCCc-chhcc-cCCcEEEEcCCCCCCCCCC-CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCC
Q 036448 401 KLGIILY-GGNIFPK-WLTSL-TNLRNLYLRSCVKCEHLPP-LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSS 475 (580)
Q Consensus 401 ~L~l~~~-~~~~lp~-~l~~l-~~L~~L~L~~~~~l~~l~~-l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 475 (580)
.|++.++ ....+|. .+..+ ..++.|++++|. ++.++. ....+ |+.|.+.++..++.++...
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~------------- 197 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDV------------- 197 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTT-------------
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHH-------------
Confidence 4444332 2233332 22332 245556666553 233332 22334 5566665555555444322
Q ss_pred CCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEec
Q 036448 476 SSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIWK 549 (580)
Q Consensus 476 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~ 549 (580)
+..+++|+.|++++. .++.++. ..|.+|+.|.+.+|..++.+|. +.++++|+.+++.+
T Consensus 198 ------f~~l~~L~~LdLs~N-~l~~lp~--------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 ------FHGASGPVILDISRT-RIHSLPS--------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ------TTTEECCSEEECTTS-CCCCCCS--------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ------hccCcccchhhcCCC-CcCccCh--------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 235566666666654 3444432 2456666666666666777763 55566777776654
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.2e-15 Score=157.39 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=146.7
Q ss_pred CCceEEEEEEecCCCcCc-ccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFP-MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
+++++.|++++|.+..++ ..+..+++|++|++++|. +..+++ ++.+++|++|+|++|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~~~~-l~~l~~L~~L~Ls~N~- 91 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------------------LYETLD-LESLSTLRTLDLNNNY- 91 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-------------------CEEEEE-CTTCTTCCEEECCSSE-
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-------------------CCCCcc-cccCCCCCEEEecCCc-
Confidence 458999999999998864 679999999999999986 444444 7778888888888886
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
+..+|. .++|++|++++| .+..+|.. .+++|+.|++.. +......+. .+..++.|+.+.+.+..
T Consensus 92 l~~l~~----~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~--N~l~~~~~~---~~~~l~~L~~L~Ls~N~---- 155 (487)
T 3oja_A 92 VQELLV----GPSIETLHAANN-NISRVSCS--RGQGKKNIYLAN--NKITMLRDL---DEGCRSRVQYLDLKLNE---- 155 (487)
T ss_dssp EEEEEE----CTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCS--SCCCSGGGB---CGGGGSSEEEEECTTSC----
T ss_pred CCCCCC----CCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCC--CCCCCCCch---hhcCCCCCCEEECCCCC----
Confidence 666654 277888888887 44444432 456777776432 222111122 23344555555555421
Q ss_pred hhHHHhcccc-cccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEE
Q 036448 347 LDEVERLQLY-NQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNL 425 (580)
Q Consensus 347 ~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L 425 (580)
+.......+. .+++|+.|++++|.+... .....+++|+.|++++|....+|+.+..+++|+.|
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV----------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE----------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccc----------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 1122222333 678899999998874211 23445889999999999999998889999999999
Q ss_pred EEcCCCCCCCCCCCCCcc-ccceeccccc
Q 036448 426 YLRSCVKCEHLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 426 ~L~~~~~l~~l~~l~~l~-L~~L~l~~~~ 453 (580)
++++|....-.+.+..++ |+.|+++++.
T Consensus 220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred EecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 999986543333467788 9999998754
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=5.2e-15 Score=140.61 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=115.5
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCcccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLK 268 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~ 268 (580)
..+.++++++.++.+|..+. ++++.|++++|+ +..+|. .+.++++|++|++++|. +.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~ 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-------------------LSSLPSKAFHRLTKLRLLYLNDNK-LQ 74 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------------CSCCCTTSSSSCTTCCEEECCSSC-CS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-------------------CCeeCHHHhcCCCCCCEEECCCCc-cC
Confidence 34567777777777776553 567777777665 555554 47777778888887776 66
Q ss_pred ccchhh-hcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCC
Q 036448 269 ELPAGI-GKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLY 346 (580)
Q Consensus 269 ~lp~~i-~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 346 (580)
.+|..+ .++++|++|++++| .+..+|. .+..+++|++|++... .....
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~--------------------------- 124 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN--QLKSL--------------------------- 124 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS--CCCCC---------------------------
T ss_pred eeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC--ccCee---------------------------
Confidence 666654 56777888888777 4455554 3566777777764321 11000
Q ss_pred hhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc-chhcccCCcEE
Q 036448 347 LDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK-WLTSLTNLRNL 425 (580)
Q Consensus 347 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L 425 (580)
....+..+++|+.|+++.|.+... ....+..+++|+.|++++|....+|. .+..+++|++|
T Consensus 125 ----~~~~~~~l~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 125 ----PPRVFDSLTKLTYLSLGYNELQSL--------------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCCC--------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ----CHHHhCcCcCCCEEECCCCcCCcc--------------CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 001133445555555555542211 11224556677777777777766654 35677777777
Q ss_pred EEcCCCCCCCCCC--CCCcc-ccceeccccc
Q 036448 426 YLRSCVKCEHLPP--LGKLP-LEKLVIIHLK 453 (580)
Q Consensus 426 ~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~ 453 (580)
++++|. ++.++. +..++ |+.|++++++
T Consensus 187 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 777773 334443 55667 7777777643
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=5.2e-15 Score=141.18 Aligned_cols=203 Identities=16% Similarity=0.142 Sum_probs=120.7
Q ss_pred cCCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccC
Q 036448 186 SFGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRR 263 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~ 263 (580)
..+..+++|+++++.+..++. .+.++++|++|++++|+ +..++. .+.++++|++|++++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-------------------IQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-------------------CCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-------------------CCccCHHHccCCcCCCEEECCC
Confidence 346789999999999998765 78999999999999986 555554 578888888888888
Q ss_pred Cccccccc-hhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCC
Q 036448 264 CRNLKELP-AGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGL 341 (580)
Q Consensus 264 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~ 341 (580)
|. +..++ ..+.++++|++|++++| .+..++. .++.+++|++|++....... . .....+..+++|+.+.+.+.
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 86 NP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS--F--KLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC--C--CCCGGGGGCTTCCEEECCSS
T ss_pred Cc-cCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccce--e--cCchhhccCCCCCEEECCCC
Confidence 87 55554 56788888888888888 4444444 57888888888743221110 0 01123344444555544432
Q ss_pred CCCCChhHHHhcccccccccc----eeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcc-h
Q 036448 342 GNVLYLDEVERLQLYNQQNLL----RLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKW-L 416 (580)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-l 416 (580)
.- .......+..+.+|+ .|+++.|.+.. +........+|+.|++++|....+|.. +
T Consensus 160 ~l----~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~---------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 160 KI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---------------IQPGAFKEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CC----CEECGGGGHHHHTCTTCCEEEECCSSCCCE---------------ECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred CC----CcCCHHHhhhhhhccccceeeecCCCcccc---------------cCccccCCCcccEEECCCCceeecCHhHh
Confidence 11 111111222233333 44454444211 111112223566666666666655543 3
Q ss_pred hcccCCcEEEEcCCCC
Q 036448 417 TSLTNLRNLYLRSCVK 432 (580)
Q Consensus 417 ~~l~~L~~L~L~~~~~ 432 (580)
..+++|++|++++|+.
T Consensus 221 ~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTCCSCCEEECCSSCB
T ss_pred cccccccEEEccCCcc
Confidence 4566666666666643
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=3.7e-15 Score=142.90 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 266 (580)
..+++.+++.++.++.+|..+. ++++.|++++|+ +..+ |..+..+++|++|++++|.
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-------------------l~~~~~~~~~~l~~L~~L~L~~n~- 66 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-------------------LYTFSLATLMPYTRLTQLNLDRAE- 66 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-------------------CSEEEGGGGTTCTTCCEEECTTSC-
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-------------------CCccCHHHhhcCCCCCEEECCCCc-
Confidence 3566777777777777776653 577777777775 4444 3456777777777777776
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
+..+|.. +.+++|++|++++| .+..+|..+..+++|++|++
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred cCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 6666653 67777777777777 56667777777777777764
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=3e-16 Score=167.20 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred ceEEEEEEecCCC---cCcccccCCCcccEEEeccCCcccccc----------cce-eeeccccccccc-----ccchhh
Q 036448 190 KVRHLGLNFQRGT---SFPMSIRGLDRLRTLLIYDRSDFNLSL----------SSI-LSSFSSSKECIE-----RLPKTL 250 (580)
Q Consensus 190 ~~~~L~l~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~l~l~~----------~~~-~L~l~~~~~~i~-----~lp~~i 250 (580)
++++|++.++... .++.....+++|++|++++|.+-+... ..+ .|+++++. +. .++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~--~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE--FAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC--CSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC--CCccCHHHHHHHH
Confidence 4666666655411 122223456677777776664321110 011 15666555 43 445556
Q ss_pred ccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCC---ccCcccCCCCCCCCcCC
Q 036448 251 CELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSL---KYMPVGISKLTSLRTLD 308 (580)
Q Consensus 251 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~lp~~i~~L~~L~~L~ 308 (580)
.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..+..+++|+.|+
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred hhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 677888888888876 6667777778888888888653222 12333455556666554
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=3.1e-16 Score=167.15 Aligned_cols=315 Identities=16% Similarity=0.079 Sum_probs=160.8
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCccccccc----------ce-eeecccccccccccchhhc
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLS----------SI-LSSFSSSKECIERLPKTLC 251 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~----------~~-~L~l~~~~~~i~~lp~~i~ 251 (580)
.+++++|++.++.+.. ++..+..+++|++|++++|..-.+... .+ .|+++++. +..+|..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--ILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--GGGGHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--HHHHHHHHh
Confidence 4677888888776432 223345677888888877754211110 11 27777777 777888888
Q ss_pred cCCCccEEeccCCccc---cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccCh-hhh
Q 036448 252 ELYNLQKLDIRRCRNL---KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRL-ESL 327 (580)
Q Consensus 252 ~L~~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l-~~L 327 (580)
++++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++..+... ...+ .-+
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~-----~~~~~~~~ 314 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLE-----TEDHCTLI 314 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCC-----HHHHHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCC-----HHHHHHHH
Confidence 8888888888754322 233445666677777777665 44556666666777777765433211 1112 223
Q ss_pred hcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEe-----------ecccCCchhHHhhhhhhHHHHhhcCCCC
Q 036448 328 KNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEF-----------GRVVDGEDEERRRKKEKDEQLLKALQLP 396 (580)
Q Consensus 328 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (580)
..+++|+.+.+... ............+++|+.|+++. +.+ ....+......+
T Consensus 315 ~~~~~L~~L~L~~~----~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~-------------~~~~~~~l~~~~ 377 (592)
T 3ogk_B 315 QKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV-------------SQRGLIALAQGC 377 (592)
T ss_dssp TTCTTCCEEEEEGG----GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC-------------CHHHHHHHHHHC
T ss_pred HhCcCCCEEeccCc----cCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc-------------CHHHHHHHHhhC
Confidence 55566666665521 11111122234566677777762 121 011111112335
Q ss_pred CCCcEEEEeecCCCC-CCcchh-cccCCcEEEEcC---CCCCCCCCC-------CCCcc-ccceecccccC-ceEeCccc
Q 036448 397 LSVEKLGIILYGGNI-FPKWLT-SLTNLRNLYLRS---CVKCEHLPP-------LGKLP-LEKLVIIHLKS-VKRVGNEF 462 (580)
Q Consensus 397 ~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~---~~~l~~l~~-------l~~l~-L~~L~l~~~~~-l~~~~~~~ 462 (580)
++|++|++..+.... .+..+. .+++|++|++++ |..++..|. +..++ |++|+++.|.+ +... .+
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~--~~ 455 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL--GL 455 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH--HH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH--HH
Confidence 667777775544422 122333 366777777763 333333221 22355 66666655442 1100 00
Q ss_pred cCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCC--CCcCCCCCC
Q 036448 463 LGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA--LPDYLLQTT 540 (580)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~--lp~~~~~l~ 540 (580)
... ...+++|+.|+++++. +..... +..+..+++|++|++++|+ ++. ++.....++
T Consensus 456 ~~~----------------~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 456 SYI----------------GQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp HHH----------------HHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred HHH----------------HHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 000 1135666666666542 221110 1122345666666666666 332 333333456
Q ss_pred CcceEEEecCc
Q 036448 541 TLQDLTIWKCA 551 (580)
Q Consensus 541 ~L~~L~i~~c~ 551 (580)
+|++|++++|.
T Consensus 514 ~L~~L~ls~n~ 524 (592)
T 3ogk_B 514 SLRYLWVQGYR 524 (592)
T ss_dssp SCCEEEEESCB
T ss_pred ccCeeECcCCc
Confidence 66666666665
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=3.6e-14 Score=140.14 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.7
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCccccccc
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKELP 271 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp 271 (580)
.++.++++++.+|..+ .+++++|++++|+ |+.+|.. |.++++|++|+|++|..+..+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-------------------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTK-------------------LRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCC-------------------CSEECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCc-------------------CCCcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 4556666777777655 3567777777765 7777754 6777888888888777445566
Q ss_pred h-hhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCceee
Q 036448 272 A-GIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFVV 312 (580)
Q Consensus 272 ~-~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~~ 312 (580)
. .+.++++|+++...++..+..+| ..+..+++|++|++...
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 4 34667777665444433555554 44677777777775443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=5.1e-14 Score=133.81 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=57.4
Q ss_pred ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCC
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 287 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 287 (580)
...+++|+.|.+++|. +..++. ++.+++|++|++++|. +..++ .++.+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~-------------------i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-------------------IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTTCCEEECTTSC-------------------CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTT
T ss_pred cccccceeeeeeCCCC-------------------cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCC
Confidence 3456778888777765 555553 7788888889988887 66665 588888888888888
Q ss_pred CCCCccCccc-CCCCCCCCcCCc
Q 036448 288 TDSLKYMPVG-ISKLTSLRTLDK 309 (580)
Q Consensus 288 ~~~~~~lp~~-i~~L~~L~~L~~ 309 (580)
| .+..+|.. ++.+++|++|++
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 95 N-QLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEEC
T ss_pred C-ccCccChhHhcCCcCCCEEEC
Confidence 8 45555543 577777777763
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=3.6e-14 Score=134.72 Aligned_cols=165 Identities=24% Similarity=0.297 Sum_probs=121.5
Q ss_pred ccccchhhccCCCccEEeccCCccccccch-hhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCC
Q 036448 243 IERLPKTLCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSN 320 (580)
Q Consensus 243 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~ 320 (580)
++.+|..+. .+|++|++++|. +..+|. .++++++|++|++++| .+..+|.. +..+++|++|++......
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~----- 98 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ----- 98 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCC-----
T ss_pred CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCC-----
Confidence 888887665 689999999998 777775 6889999999999999 56677765 478899998874321110
Q ss_pred ccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCc
Q 036448 321 TCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVE 400 (580)
Q Consensus 321 ~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (580)
.. ....+..+++|+.|+++.|.+... ....+..+++|+
T Consensus 99 -------------------~~---------~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~ 136 (270)
T 2o6q_A 99 -------------------AL---------PIGVFDQLVNLAELRLDRNQLKSL--------------PPRVFDSLTKLT 136 (270)
T ss_dssp -------------------CC---------CTTTTTTCSSCCEEECCSSCCCCC--------------CTTTTTTCTTCC
T ss_pred -------------------cC---------CHhHcccccCCCEEECCCCccCee--------------CHHHhCcCcCCC
Confidence 00 011244567788888887764322 123467789999
Q ss_pred EEEEeecCCCCCCcc-hhcccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCc
Q 036448 401 KLGIILYGGNIFPKW-LTSLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGN 460 (580)
Q Consensus 401 ~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~ 460 (580)
.|++++|....+|.. +..+++|++|++++|.. ..++. +..++ |++|+++++ .+..++.
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 198 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNN-QLKRVPE 198 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECCCC-cCCcCCH
Confidence 999999999888765 67899999999999854 44443 67889 999999986 3554443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.8e-16 Score=159.19 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=49.4
Q ss_pred cCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcccc----ccchhh----
Q 036448 203 SFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLK----ELPAGI---- 274 (580)
Q Consensus 203 ~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i---- 274 (580)
.++..+..+++|++|++++|++-+.. ...++..+.++++|++|+|++|. +. .+|.++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~--------------~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEA--------------ARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLL 87 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHH--------------HHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHH--------------HHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHH
Confidence 35556666677777777666421100 22244445566667777776653 22 334433
Q ss_pred ---hcccCCCeEEcCCCCCCc----cCcccCCCCCCCCcCCc
Q 036448 275 ---GKLKNMRSLLNGETDSLK----YMPVGISKLTSLRTLDK 309 (580)
Q Consensus 275 ---~~l~~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~~ 309 (580)
..+++|++|++++|.... .+|..+..+++|++|++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEEC
Confidence 456667777776663222 24445556666666654
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.8e-14 Score=134.28 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=122.1
Q ss_pred CCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccC-
Q 036448 187 FGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRR- 263 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~- 263 (580)
.+..++.|+++++.+..+|. .+..+++|++|++++|+. ++.+|. .+.++++|++|++++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~------------------l~~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT------------------LQQLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS------------------CCEECTTTEESCTTCCEEEEEEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC------------------cceeCHhHcCCCcCCcEEECCCC
Confidence 45577777777777777655 566777777777777642 444554 466777777777776
Q ss_pred Cccccccch-hhhcccCCCeEEcCCCCCCccCcccCCCCCCCC---cCCceeecCccCCCCccChhhhhcCCcCCceeEe
Q 036448 264 CRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLR---TLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIE 339 (580)
Q Consensus 264 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~---~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 339 (580)
|. +..+|. .+.++++|++|++++| .+..+|. ++.+++|+ +|+ +.
T Consensus 91 n~-l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~-----------------------------l~ 138 (239)
T 2xwt_C 91 RN-LTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILE-----------------------------IT 138 (239)
T ss_dssp TT-CCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEE-----------------------------EE
T ss_pred CC-eeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEE-----------------------------CC
Confidence 44 666653 4566777777777776 4555655 55555555 444 22
Q ss_pred CCCCCCChhHHHhcccccccccc-eeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecC-CCCCC-cch
Q 036448 340 GLGNVLYLDEVERLQLYNQQNLL-RLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYG-GNIFP-KWL 416 (580)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp-~~l 416 (580)
+...+ .......+.++++|+ .|+++.|.+. .++......++|+.|++++|. ...+| ..+
T Consensus 139 ~N~~l---~~i~~~~~~~l~~L~~~L~l~~n~l~---------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 139 DNPYM---TSIPVNAFQGLCNETLTLKLYNNGFT---------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp SCTTC---CEECTTTTTTTBSSEEEEECCSCCCC---------------EECTTTTTTCEEEEEECTTCTTCCEECTTTT
T ss_pred CCcch---hhcCcccccchhcceeEEEcCCCCCc---------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHh
Confidence 21010 111112345567777 7777776532 111111122688999999884 77775 456
Q ss_pred hcc-cCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccC
Q 036448 417 TSL-TNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKS 454 (580)
Q Consensus 417 ~~l-~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~ 454 (580)
..+ ++|+.|++++|. ++.+|.. .++ |+.|.+.++..
T Consensus 201 ~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECTTC--
T ss_pred hccccCCcEEECCCCc-cccCChh-HhccCceeeccCccC
Confidence 678 999999999874 4566653 677 99998887653
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=3.8e-14 Score=137.59 Aligned_cols=204 Identities=17% Similarity=0.073 Sum_probs=122.8
Q ss_pred CceEEEEEEecCCCc-Ccccc--cCCCcccEEEeccCCcccccccceeeecccccccccccc-hhhccCCCccEEeccCC
Q 036448 189 DKVRHLGLNFQRGTS-FPMSI--RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRRC 264 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~-~~~~~--~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~ 264 (580)
.++++|++++|.+.. .|..+ ..+++|++|++++|++-.. ...++ ..+..+++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~---------------~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG---------------RSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST---------------TSSHHHHHTTBCSCCCEEEEECC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch---------------hhhhHHHHhhhccCCCEEEeeCC
Confidence 347777777777654 44455 6677777777777652100 01111 23456777777777777
Q ss_pred cccccc-chhhhcccCCCeEEcCCCCCCcc--Ccc--cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEe
Q 036448 265 RNLKEL-PAGIGKLKNMRSLLNGETDSLKY--MPV--GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIE 339 (580)
Q Consensus 265 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~--lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 339 (580)
. +..+ |..++.+++|++|++++|..... ++. .++.+++|++|++..+..
T Consensus 156 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l------------------------- 209 (310)
T 4glp_A 156 H-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM------------------------- 209 (310)
T ss_dssp S-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-------------------------
T ss_pred C-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-------------------------
Confidence 7 4444 35667777777777777743221 222 235666777776432111
Q ss_pred CCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcc
Q 036448 340 GLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSL 419 (580)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l 419 (580)
..........+..+++|+.|++++|.+..... .....+..+++|+.|++++|....+|..+.
T Consensus 210 -----~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-----------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-- 271 (310)
T 4glp_A 210 -----ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-----------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-- 271 (310)
T ss_dssp -----CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-----------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC--
T ss_pred -----CchHHHHHHHHhcCCCCCEEECCCCCCCccch-----------hhHHhccCcCcCCEEECCCCCCCchhhhhc--
Confidence 11111111123456777778877776432200 001122234789999999999988888774
Q ss_pred cCCcEEEEcCCCCCCCCCCCCCcc-ccceecccc
Q 036448 420 TNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 420 ~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~ 452 (580)
++|+.|++++|. ++.+|....++ |+.|++++.
T Consensus 272 ~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 899999999984 55666678888 999998864
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=137.53 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCCCCcEEEEeecCCCCCCcc----hhcccCCcEEEEcCCCCCCCCCC-CCCccccceecccccCceEeCccccCCCCC
Q 036448 394 QLPLSVEKLGIILYGGNIFPKW----LTSLTNLRNLYLRSCVKCEHLPP-LGKLPLEKLVIIHLKSVKRVGNEFLGIEES 468 (580)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~lp~~----l~~l~~L~~L~L~~~~~l~~l~~-l~~l~L~~L~l~~~~~l~~~~~~~~~~~~~ 468 (580)
..+++|+.|++++|....+|.. +..+++|++|+|++|......|. +..+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------------- 247 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-------------------------- 247 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC--------------------------
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc--------------------------
Confidence 3455666666666666554432 35678888888888754333222 2111
Q ss_pred CCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEe
Q 036448 469 SEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIW 548 (580)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~ 548 (580)
..+++|+.|+++++ .++.++. .+ +++|++|++++|. ++.+|. +..+++|++|+++
T Consensus 248 --------------~~~~~L~~L~Ls~N-~l~~lp~------~~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 248 --------------MWSSALNSLNLSFA-GLEQVPK------GL--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp --------------CCCTTCCCEECCSS-CCCSCCS------CC--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECS
T ss_pred --------------cCcCcCCEEECCCC-CCCchhh------hh--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECc
Confidence 12244555555443 2332222 11 3678888888766 777665 4567888888887
Q ss_pred cCc
Q 036448 549 KCA 551 (580)
Q Consensus 549 ~c~ 551 (580)
+++
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 775
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.3e-15 Score=162.36 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=41.0
Q ss_pred Cccccccccccccccccccccccccccc-CCCCccceeeeccCCCCCC--CCcCCCCCCCcceEEEecCcch
Q 036448 485 FPKLKSLIIGAMEELEEWNYRITRKENI-SIMPRLSSLEVRSCNKLKA--LPDYLLQTTTLQDLTIWKCALL 553 (580)
Q Consensus 485 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~i~~c~~l 553 (580)
+++|+.|++++|. +..... ..+ ..+++|++|++++|+. +. ++.....+++|++|++++|+..
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~-----~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGM-----HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHH-----HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCC-CcHHHH-----HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6778888887764 221111 111 4589999999999984 32 2224445789999999999763
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=5.7e-15 Score=145.39 Aligned_cols=203 Identities=16% Similarity=0.081 Sum_probs=138.7
Q ss_pred CceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccc--ccchhhccCCCccEEeccCCcc
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIE--RLPKTLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~--~lp~~i~~L~~L~~L~L~~~~~ 266 (580)
..++.+++.++.+...+..+..+++|++|++++|. +. .+|..+..+++|++|++++|..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-------------------l~~~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-------------------IEVSTLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-------------------ECHHHHHHHHTTBCCCSEEECTTCBC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-------------------cCHHHHHHHHhhCCCCCEEeCcCccc
Confidence 56788889888888777778889999999998885 33 2777789999999999999984
Q ss_pred ccccchhhhcccCCCeEEcCCCCCCc--cCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCC
Q 036448 267 LKELPAGIGKLKNMRSLLNGETDSLK--YMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNV 344 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~ 344 (580)
....|..++++++|++|++++|..+. .+|..+..+++|++|++..+.... .
T Consensus 131 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~----~----------------------- 183 (336)
T 2ast_B 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT----E----------------------- 183 (336)
T ss_dssp CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC----H-----------------------
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC----h-----------------------
Confidence 45778889999999999999995555 356667778888888754321100 0
Q ss_pred CChhHHHhccccccc-ccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCC--CCCCcchhcccC
Q 036448 345 LYLDEVERLQLYNQQ-NLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGG--NIFPKWLTSLTN 421 (580)
Q Consensus 345 ~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~lp~~l~~l~~ 421 (580)
......+..++ +|+.|++++|...- ....++..+..+++|+.|++++|.. ...+..+..+++
T Consensus 184 ----~~~~~~~~~l~~~L~~L~l~~~~~~~-----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 184 ----KHVQVAVAHVSETITQLNLSGYRKNL-----------QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp ----HHHHHHHHHSCTTCCEEECCSCGGGS-----------CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ----HHHHHHHHhcccCCCEEEeCCCcccC-----------CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 00111233455 66666666663100 1122333444567888888888873 244667788899
Q ss_pred CcEEEEcCCCCCC--CCCCCCCcc-ccceecccc
Q 036448 422 LRNLYLRSCVKCE--HLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 422 L~~L~L~~~~~l~--~l~~l~~l~-L~~L~l~~~ 452 (580)
|++|++++|.... .+..+..+| |+.|++++|
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999999886332 122355667 777777765
No 93
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=149.88 Aligned_cols=137 Identities=21% Similarity=0.322 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhccc----cc----ccccchhHHHhhhcCCCCcchhh
Q 036448 13 NLEPIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKV----EE----IGQGLLAPLLLSYNDLPSNSMVK 84 (580)
Q Consensus 13 ~~~~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~----~~----~~~~~~~~l~~sy~~L~~~~~~k 84 (580)
...+.+.+|+++|+|+||||+.+|+.|+.+. ..|+.+++...... .. ....+...+..||+.||. +.|
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~ 380 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIK 380 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHH
Confidence 3456789999999999999999999998774 46887776432211 11 113577889999999999 789
Q ss_pred hhhhhccccCCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEecHHHHHHHH
Q 036448 85 QCFSYCAVFPKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKMHDIVHDFAQ 164 (580)
Q Consensus 85 ~~fl~~~~f~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~~~~~ 164 (580)
.||+++|+||+|+.|+...+...|.++ .+.++.++++|++++|++.... +....|+||++++++++
T Consensus 381 ~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 381 DYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHH
T ss_pred HHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHH
Confidence 999999999999999999999999543 2346789999999999985432 33446899999999998
Q ss_pred Hhh
Q 036448 165 FVS 167 (580)
Q Consensus 165 ~i~ 167 (580)
...
T Consensus 447 ~~~ 449 (591)
T 1z6t_A 447 EKN 449 (591)
T ss_dssp HHT
T ss_pred hhh
Confidence 873
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=2.5e-13 Score=129.06 Aligned_cols=189 Identities=22% Similarity=0.212 Sum_probs=134.9
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
.++++.|++.++.+..++ .+..+++|++|++++|+ +..++ .++++++|++|++++|. +
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-------------------l~~~~-~l~~l~~L~~L~L~~n~-l 97 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-------------------LHDIS-ALKELTNLTYLILTGNQ-L 97 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-------------------CCCCG-GGTTCTTCCEEECTTSC-C
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-------------------CCCch-hhcCCCCCCEEECCCCc-c
Confidence 568899999999988654 58889999999999886 55554 68899999999999998 7
Q ss_pred cccchh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCC
Q 036448 268 KELPAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVL 345 (580)
Q Consensus 268 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~ 345 (580)
..+|.. ++++++|++|++++| .+..+|.. ++.+++|++|++..+... ..
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~-------------------------- 148 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ--SL-------------------------- 148 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC--CC--------------------------
T ss_pred CccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccC--cc--------------------------
Confidence 666654 688999999999999 45555554 788888888874322110 00
Q ss_pred ChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc-chhcccCCcE
Q 036448 346 YLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK-WLTSLTNLRN 424 (580)
Q Consensus 346 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~ 424 (580)
....+..+++|+.|+++.|.+... ....+..+++|+.|++++|....+|. .+..+++|+.
T Consensus 149 -----~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 149 -----PKGVFDKLTNLTELDLSYNQLQSL--------------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCCC--------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -----CHHHhccCccCCEEECCCCCcCcc--------------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 001234456677777777663211 12235667888999998888877765 4678999999
Q ss_pred EEEcCCCCCCCCCCCCCcc-ccceecccc
Q 036448 425 LYLRSCVKCEHLPPLGKLP-LEKLVIIHL 452 (580)
Q Consensus 425 L~L~~~~~l~~l~~l~~l~-L~~L~l~~~ 452 (580)
|++++|+.. +..| |+.|+++.+
T Consensus 210 L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 210 IWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EEccCCCcc------ccCcHHHHHHHHHH
Confidence 999998543 3455 666666643
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.2e-13 Score=130.66 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=64.1
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..+++.|+++++.+..++ .+..+++|++|++++|+ +..++. ++++++|++|++++|. +
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-------------------l~~~~~-l~~l~~L~~L~l~~n~-l 102 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-------------------LTDIKP-LANLKNLGWLFLDENK-V 102 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-------------------CCCCGG-GTTCTTCCEEECCSSC-C
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-------------------cCCCcc-cccCCCCCEEECCCCc-C
Confidence 345677777777776664 36667777777777765 555655 7777777777777776 6
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
..+|. ++.+++|++|++++| .+..+ ..+..+++|++|+
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTS-CCCCC-GGGGGCTTCCEEE
T ss_pred CCChh-hccCCCCCEEECCCC-cCCCC-hhhcCCCCCCEEE
Confidence 66654 777777777777777 34444 2355556666555
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=6e-13 Score=127.57 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=43.5
Q ss_pred hccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 250 LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 250 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
+..+++|++|++++|. +..+|. +..+++|++|++++| .+..++. +..+++|++|++
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l 97 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEEC
Confidence 4677888899998887 777765 888899999999888 5556655 777777777764
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=1.5e-14 Score=145.16 Aligned_cols=246 Identities=15% Similarity=0.038 Sum_probs=152.3
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEecc
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIR 262 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~ 262 (580)
.+.+++|++++|.+.. ++..+..+++|++|++++|..-.+.+.. ... +..+...+..+++|++|+|+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~------~~~--~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI------PEA--LRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS------HHH--HHHHHHHHTTCTTCCEEECC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccch------hHH--HHHHHHHHhhCCcccEEECC
Confidence 4678999999998765 3445778999999999987421111000 000 22333344788888899998
Q ss_pred CCccccc-----cchhhhcccCCCeEEcCCCCCCc----cCcccCCCC---------CCCCcCCceeecCccCCCCccCh
Q 036448 263 RCRNLKE-----LPAGIGKLKNMRSLLNGETDSLK----YMPVGISKL---------TSLRTLDKFVVGGGVDGSNTCRL 324 (580)
Q Consensus 263 ~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~i~~L---------~~L~~L~~~~~~~~~~~~~~~~l 324 (580)
+|. +.. +|..+.++++|++|++++|.... .++..+..+ ++|++|++..+.... ...+...
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~ 180 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWA 180 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHH
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHH
Confidence 887 443 77788888889999988884321 222233344 788888754332210 0001111
Q ss_pred hhhhcCCcCCceeEeCCCCCC-ChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEE
Q 036448 325 ESLKNLQLVRECGIEGLGNVL-YLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLG 403 (580)
Q Consensus 325 ~~L~~L~~L~~l~i~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 403 (580)
..+..++.|+.+.+....-.. .........+..+++|+.|++++|.+.+ .....++..+..+++|+.|+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----------~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----------LGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----------HHHHHHHHHGGGCTTCCEEE
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----------HHHHHHHHHHccCCCcCEEE
Confidence 345667777777777642110 0111233366778899999998887321 11244566777788899999
Q ss_pred EeecCCCC-----CCcchhc--ccCCcEEEEcCCCCCC----CCCC-C-CCcc-ccceeccccc
Q 036448 404 IILYGGNI-----FPKWLTS--LTNLRNLYLRSCVKCE----HLPP-L-GKLP-LEKLVIIHLK 453 (580)
Q Consensus 404 l~~~~~~~-----lp~~l~~--l~~L~~L~L~~~~~l~----~l~~-l-~~l~-L~~L~l~~~~ 453 (580)
+++|.... +|.++.. +++|++|+|++|.... .+|. + ..+| |++|+++++.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 98888754 3556643 8889999999885443 2443 2 3467 8888888754
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=5.4e-15 Score=157.58 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=40.9
Q ss_pred ccCcccccccccccccccccccccccccccC-CCCccceeeeccCCCCCC-CCcCC-CCCCCcceEEEecCcc
Q 036448 483 IAFPKLKSLIIGAMEELEEWNYRITRKENIS-IMPRLSSLEVRSCNKLKA-LPDYL-LQTTTLQDLTIWKCAL 552 (580)
Q Consensus 483 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~L~~-lp~~~-~~l~~L~~L~i~~c~~ 552 (580)
..+++|+.|++++ .+..... ..+. .+++|++|++++|. ++. .+..+ ..+++|++|++++|+.
T Consensus 429 ~~~~~L~~L~L~~--~l~~~~~-----~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 429 EHCKDLRRLSLSG--LLTDKVF-----EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHCTTCCEEECCS--SCCHHHH-----HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hhCCCccEEeecC--cccHHHH-----HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4677888888865 3332211 1122 37899999999987 432 12222 4589999999999986
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=8.6e-13 Score=123.71 Aligned_cols=97 Identities=21% Similarity=0.223 Sum_probs=65.9
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCcccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLK 268 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~ 268 (580)
..++++++++.+..+|..+. ++++.|++++|+ +..++. .++++++|++|++++|. +.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n~-l~ 72 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-------------------LATLSDATFRGLTKLTWLNLDYNQ-LQ 72 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-------------------CCCCCTTTTTTCTTCCEEECTTSC-CC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-------------------cCccCHhHhcCcccCCEEECCCCc-CC
Confidence 34567777777777777654 577888777775 444443 47788888888888887 55
Q ss_pred ccch-hhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCc
Q 036448 269 ELPA-GIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDK 309 (580)
Q Consensus 269 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~ 309 (580)
.+++ .+..+++|++|++++| .+..+|. .++.+++|++|++
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEc
Confidence 5443 4677888888888887 4444443 3566777777663
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=4.2e-13 Score=141.22 Aligned_cols=170 Identities=20% Similarity=0.174 Sum_probs=107.1
Q ss_pred ccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCC
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGE 287 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 287 (580)
+..+++|+.|++++|. +..+| .+..+++|++|+|++|. +..+|+ +..+++|++|++++
T Consensus 39 ~~~L~~L~~L~l~~n~-------------------i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-------------------IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHTTCCCCBCTTCC-------------------CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred hhcCCCCCEEECcCCC-------------------CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcC
Confidence 3557778888877775 67776 48899999999999998 777877 89999999999999
Q ss_pred CCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEE
Q 036448 288 TDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLE 367 (580)
Q Consensus 288 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 367 (580)
| .+..+| .+..+++|+.|++..+... .+..+..|++|+.|.+....- ..+ ..+..+++|+.|+++
T Consensus 97 N-~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l~~l~~l~~L~~L~Ls~N~l-~~l-----~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 97 N-KIKDLS-SLKDLKKLKSLSLEHNGIS-------DINGLVHLPQLESLYLGNNKI-TDI-----TVLSRLTKLDTLSLE 161 (605)
T ss_dssp S-CCCCCT-TSTTCTTCCEEECTTSCCC-------CCGGGGGCTTCSEEECCSSCC-CCC-----GGGGSCTTCSEEECC
T ss_pred C-CCCCCh-hhccCCCCCEEEecCCCCC-------CCccccCCCccCEEECCCCcc-CCc-----hhhcccCCCCEEECc
Confidence 9 566655 6888888988885432211 234455555566655554321 111 234455566666665
Q ss_pred eecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCC
Q 036448 368 FGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCV 431 (580)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~ 431 (580)
.|.+... .. +..+++|+.|++++|.+..+| .+..+++|+.|+|++|.
T Consensus 162 ~N~l~~~---------------~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DNQISDI---------------VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCCC---------------GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCcCCCc---------------hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 5542211 01 444555666666665555543 35555666666666553
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.2e-12 Score=117.66 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=59.3
Q ss_pred CceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCcccc
Q 036448 189 DKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLK 268 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~ 268 (580)
.++++|+++++.+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|....
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-------------------~~~~~-~l~~l~~L~~L~l~~n~l~~ 102 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-------------------ATNYN-PISGLSNLERLRIMGKDVTS 102 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-------------------CSCCG-GGTTCTTCCEEEEECTTCBG
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-------------------CCcch-hhhcCCCCCEEEeECCccCc
Confidence 45667777777666666 56666777777766663 33333 46666677777777666323
Q ss_pred ccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 269 ELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 269 ~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
..|..++.+++|++|++++|......|..++.+++|++|+
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3555666667777777766633333444455555555554
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.2e-12 Score=117.73 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=60.8
Q ss_pred cCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCC
Q 036448 209 RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 209 ~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
..+++|++|++++|. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n~-------------------i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-------------------VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHHTCCEEEEESSC-------------------CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECT
T ss_pred hhcCCccEEeccCCC-------------------ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECC
Confidence 556788888888776 77777 68888999999999885 66665 5888999999999988
Q ss_pred CCCccCcccCCCCCCCCcCCc
Q 036448 289 DSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 289 ~~~~~lp~~i~~L~~L~~L~~ 309 (580)
......|..++.+++|++|++
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEEC
T ss_pred ccCcccChhhcCCCCCCEEEe
Confidence 544446667777777777764
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=4.3e-12 Score=131.99 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=48.1
Q ss_pred cccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCc
Q 036448 213 RLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLK 292 (580)
Q Consensus 213 ~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 292 (580)
+|++|++++|. ++.+|..+. ++|++|+|++|. +..+| ..+++|++|++++| .+.
T Consensus 60 ~L~~L~Ls~n~-------------------L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 60 QFSELQLNRLN-------------------LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp TCSEEECCSSC-------------------CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCS
T ss_pred CccEEEeCCCC-------------------CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCC
Confidence 67777777665 666777663 778888888887 77788 45788888888888 555
Q ss_pred cCcccCCCCCCCCcCC
Q 036448 293 YMPVGISKLTSLRTLD 308 (580)
Q Consensus 293 ~lp~~i~~L~~L~~L~ 308 (580)
.+|. +.. +|++|+
T Consensus 114 ~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 114 TLPE-LPA--SLKHLD 126 (571)
T ss_dssp CCCC-CCT--TCCEEE
T ss_pred Ccch-hhc--CCCEEE
Confidence 5666 544 666665
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=9e-13 Score=138.68 Aligned_cols=173 Identities=19% Similarity=0.169 Sum_probs=131.8
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
...++.|+++++.+..++ .+..+++|+.|++++|+ +..+|. ++.+++|++|+|++|. +
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-------------------l~~~~~-l~~l~~L~~L~Ls~N~-l 99 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-------------------LTDIKP-LTNLKNLGWLFLDENK-I 99 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-------------------CCCCGG-GGGCTTCCEEECCSSC-C
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-------------------CCCChh-hccCCCCCEEECcCCC-C
Confidence 467888999999988776 58899999999999886 666666 8899999999999987 7
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCCh
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~ 347 (580)
..+| .+..+++|++|++++| .+..+| .+..+++|+.|++..+... .+..+..+++|+.|.+....- ..
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~-------~l~~l~~l~~L~~L~Ls~N~l-~~- 167 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKIT-------DITVLSRLTKLDTLSLEDNQI-SD- 167 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCC-------CCGGGGSCTTCSEEECCSSCC-CC-
T ss_pred CCCh-hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCccC-------CchhhcccCCCCEEECcCCcC-CC-
Confidence 7776 5889999999999998 455554 5888899998885433222 235677777888888776432 11
Q ss_pred hHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCc
Q 036448 348 DEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPK 414 (580)
Q Consensus 348 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~ 414 (580)
... +..+++|+.|+++.|.+.. +..+..+++|+.|++++|.....|.
T Consensus 168 --~~~--l~~l~~L~~L~Ls~N~i~~----------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 168 --IVP--LAGLTKLQNLYLSKNHISD----------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp --CGG--GTTCTTCCEEECCSSCCCB----------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred --chh--hccCCCCCEEECcCCCCCC----------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 112 7788999999999997432 1346778999999999998866553
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=3.7e-12 Score=119.39 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=112.4
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccc-hhhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCcee
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELP-AGIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKFV 311 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~~ 311 (580)
++++++. ++.+|..+. .+|++|++++|. +..++ ..++++++|++|++++|. +..++ ..+..+++|++|++..
T Consensus 19 l~~~~~~--l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 19 VDCQGKS--LDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp EECTTCC--CSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred EecCCCC--ccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCC
Confidence 3444444 889998765 689999999998 55554 468999999999999994 44444 4578899999988432
Q ss_pred ecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhh
Q 036448 312 VGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLK 391 (580)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (580)
+..... ....+..+++|+.|+++.|.+... ...
T Consensus 93 --n~l~~~-------------------------------~~~~~~~l~~L~~L~L~~N~l~~~--------------~~~ 125 (251)
T 3m19_A 93 --NQLASL-------------------------------PLGVFDHLTQLDKLYLGGNQLKSL--------------PSG 125 (251)
T ss_dssp --SCCCCC-------------------------------CTTTTTTCTTCCEEECCSSCCCCC--------------CTT
T ss_pred --Cccccc-------------------------------ChhHhcccCCCCEEEcCCCcCCCc--------------Chh
Confidence 111000 011234456677777776663211 112
Q ss_pred cCCCCCCCcEEEEeecCCCCCCc-chhcccCCcEEEEcCCCCCCCCC--CCCCcc-ccceeccccc
Q 036448 392 ALQLPLSVEKLGIILYGGNIFPK-WLTSLTNLRNLYLRSCVKCEHLP--PLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~l~~l~--~l~~l~-L~~L~l~~~~ 453 (580)
.+..+++|+.|++++|....+|. .+..+++|++|+|++|... .++ .+..++ |+.|++++++
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence 34567788888888888877766 5778888888888888543 443 366778 8888887643
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=2.2e-13 Score=135.24 Aligned_cols=83 Identities=17% Similarity=0.033 Sum_probs=47.9
Q ss_pred ccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCC-CCCcEEEEeecCCCC-----CCcchhc-ccCCcEEEEcCCCC
Q 036448 360 NLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLP-LSVEKLGIILYGGNI-----FPKWLTS-LTNLRNLYLRSCVK 432 (580)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----lp~~l~~-l~~L~~L~L~~~~~ 432 (580)
+|+.|++++|.+.... ...+...+... ++|+.|++++|.... ++..+.. .++|++|+|++|..
T Consensus 168 ~L~~L~Ls~n~l~~~~----------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 168 NVNSLNLRGNNLASKN----------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp TCCEEECTTSCGGGSC----------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred cccEeeecCCCCchhh----------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 7777777777643221 12223333334 477778877777655 4555554 34788888887743
Q ss_pred CCCCC------CCCCcc-ccceeccccc
Q 036448 433 CEHLP------PLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 433 l~~l~------~l~~l~-L~~L~l~~~~ 453 (580)
+..+ .+..++ |+.|+++++.
T Consensus 238 -~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 -HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3222 135566 7777777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.5e-12 Score=122.67 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=112.4
Q ss_pred ecccccccccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecC
Q 036448 235 SFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGG 314 (580)
Q Consensus 235 ~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~ 314 (580)
+++++. ++.++ .+..+++|++|++++|. +..+| .+..+++|++|++++| .+..+|. ++.+++|++|++.....
T Consensus 25 ~l~~~~--i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 25 NLGKQS--VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHTCSC--TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HhcCCC--ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCcc
Confidence 344444 77777 58889999999999987 88888 6899999999999998 5677776 88888888887432211
Q ss_pred ccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCC
Q 036448 315 GVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQ 394 (580)
Q Consensus 315 ~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (580)
. .+ +. +.. ++|+.|+++.|.+.. ...+.
T Consensus 98 ~----------~l--------------~~-----------~~~-~~L~~L~L~~N~l~~----------------~~~l~ 125 (263)
T 1xeu_A 98 K----------NL--------------NG-----------IPS-ACLSRLFLDNNELRD----------------TDSLI 125 (263)
T ss_dssp S----------CC--------------TT-----------CCC-SSCCEEECCSSCCSB----------------SGGGT
T ss_pred C----------Cc--------------Cc-----------ccc-CcccEEEccCCccCC----------------Chhhc
Confidence 0 00 00 111 567777777776321 12456
Q ss_pred CCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceeccccc
Q 036448 395 LPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLK 453 (580)
Q Consensus 395 ~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~ 453 (580)
.+++|+.|++++|....+| .+..+++|+.|++++|. +..++.+..++ |+.|+++++.
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred CcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 6788888888888887775 67788888999888884 44446777788 8888888643
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.4e-14 Score=149.76 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=112.4
Q ss_pred ccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcC
Q 036448 251 CELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNL 330 (580)
Q Consensus 251 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 330 (580)
...++|+.|+|++|. +..+|.+|++|++|+.|++++|..+..+|..+. .++. .+..+..++.+.+|
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~~~-------~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMR------ALDP-------LLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCT-------GGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------hccc-------ccCCHHHHHHHHhc
Confidence 567889999999988 889999999999999999977632222221110 0000 00001222333333
Q ss_pred CcCCceeEeCCCCCCChhHHHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCC
Q 036448 331 QLVRECGIEGLGNVLYLDEVERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGN 410 (580)
Q Consensus 331 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 410 (580)
+.|..+... .+.+|..+.+..|. ...+. ...|+.|++++|...
T Consensus 412 ~~L~~l~~n-----------------~~~~L~~l~l~~n~---------------i~~l~-----~~~L~~L~Ls~n~l~ 454 (567)
T 1dce_A 412 KAVDPMRAA-----------------YLDDLRSKFLLENS---------------VLKME-----YADVRVLHLAHKDLT 454 (567)
T ss_dssp HHHCGGGHH-----------------HHHHHHHHHHHHHH---------------HHHHH-----HTTCSEEECTTSCCS
T ss_pred ccCcchhhc-----------------ccchhhhhhhhccc---------------ccccC-----ccCceEEEecCCCCC
Confidence 322211000 00111111111111 01111 124777888887777
Q ss_pred CCCcchhcccCCcEEEEcCCCCCCCCC-CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCccc
Q 036448 411 IFPKWLTSLTNLRNLYLRSCVKCEHLP-PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKL 488 (580)
Q Consensus 411 ~lp~~l~~l~~L~~L~L~~~~~l~~l~-~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 488 (580)
.+|. +..+++|+.|+|++|.. +.+| .++.++ |+.|+++++. +..++ .+..+++|
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~lp---------------------~l~~l~~L 510 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVD---------------------GVANLPRL 510 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCG---------------------GGTTCSSC
T ss_pred CCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCC-CCCCc---------------------ccCCCCCC
Confidence 7776 77788888888887743 3554 355566 6666666532 22111 13455666
Q ss_pred ccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCC----CCCCcceEE
Q 036448 489 KSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLL----QTTTLQDLT 546 (580)
Q Consensus 489 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~----~l~~L~~L~ 546 (580)
+.|+++++ .++.+. .+..+..+++|+.|++++|+ ++.+|.... .+++|+.|+
T Consensus 511 ~~L~Ls~N-~l~~~~----~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNN-RLQQSA----AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSS-CCCSSS----TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCC-CCCCCC----CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 66655553 233221 02345566777777777665 555554332 256666664
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=1.3e-12 Score=135.80 Aligned_cols=184 Identities=16% Similarity=0.091 Sum_probs=107.9
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
+++.|+++++.+..+|..+ +++|++|++++|+ ++.+| +.+++|++|++++|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-------------------l~~ip---~~l~~L~~L~Ls~N~-l~~ 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-------------------LISLP---ELPASLEYLDACDNR-LST 114 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-------------------CSCCC---CCCTTCCEEECCSSC-CSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-------------------Ccccc---cccCCCCEEEccCCC-CCC
Confidence 6788888888888888766 3788888888876 55555 345666666666665 555
Q ss_pred cchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhH
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDE 349 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~ 349 (580)
+|. +.+ +|++|++++| .+..+|. .+++|++|++..+ .... +.. .+++|+.+.+.+..- ..+..
T Consensus 115 ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N--~l~~-----lp~--~l~~L~~L~Ls~N~L-~~lp~ 177 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNN--QLTM-----LPE--LPTSLEVLSVRNNQL-TFLPE 177 (571)
T ss_dssp CCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS--CCSC-----CCC--CCTTCCEEECCSSCC-SCCCC
T ss_pred cch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCC--ccCc-----CCC--cCCCcCEEECCCCCC-CCcch
Confidence 666 444 6666666666 4444555 4566666653221 1110 111 233444444443211 11111
Q ss_pred HHhcccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhc-CCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEc
Q 036448 350 VERLQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKA-LQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLR 428 (580)
Q Consensus 350 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 428 (580)
+. ++|+.|+++.|.+..... +... ....+.|+.|++++|.+..+|.++..+++|+.|+|+
T Consensus 178 -----l~--~~L~~L~Ls~N~L~~lp~------------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 178 -----LP--ESLEALDVSTNLLESLPA------------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp -----CC--TTCCEEECCSSCCSSCCC------------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred -----hh--CCCCEEECcCCCCCchhh------------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 11 677888888776431110 0000 011223388888888888888888888899999998
Q ss_pred CCCCCC
Q 036448 429 SCVKCE 434 (580)
Q Consensus 429 ~~~~l~ 434 (580)
+|....
T Consensus 239 ~N~l~~ 244 (571)
T 3cvr_A 239 DNPLSS 244 (571)
T ss_dssp SSSCCH
T ss_pred CCcCCC
Confidence 886544
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=2.6e-13 Score=134.77 Aligned_cols=261 Identities=9% Similarity=-0.016 Sum_probs=140.9
Q ss_pred ecccccccccc-cchhhccCCCccEEeccCCccccccc-----hhhhccc-CCCeEEcCCCCCCccCcccCCCC-----C
Q 036448 235 SFSSSKECIER-LPKTLCELYNLQKLDIRRCRNLKELP-----AGIGKLK-NMRSLLNGETDSLKYMPVGISKL-----T 302 (580)
Q Consensus 235 ~l~~~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp-----~~i~~l~-~L~~L~l~~~~~~~~lp~~i~~L-----~ 302 (580)
.++.+. +.. +|..+....+|++|++++|. +...+ ..+..++ +|++|++++|......+..+..+ +
T Consensus 4 ~ls~n~--~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 4 KLTLHP--GSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp ECCCCT--TCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccc--chHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 344555 554 34444555559999999888 66655 5667777 89999998884333334445554 7
Q ss_pred CCCcCCceeecCccCCCCccChh-hhhcC-CcCCceeEeCCCCCCChhHHHhccccc-ccccceeEEEeecccCCchhHH
Q 036448 303 SLRTLDKFVVGGGVDGSNTCRLE-SLKNL-QLVRECGIEGLGNVLYLDEVERLQLYN-QQNLLRLRLEFGRVVDGEDEER 379 (580)
Q Consensus 303 ~L~~L~~~~~~~~~~~~~~~~l~-~L~~L-~~L~~l~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~ 379 (580)
+|++|++..+... ......+. .+..+ +.|+.+.+....-...........+.. .++|+.|++++|.+.+..
T Consensus 81 ~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---- 154 (362)
T 3goz_A 81 NVTSLNLSGNFLS--YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS---- 154 (362)
T ss_dssp TCCEEECCSSCGG--GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC----
T ss_pred CccEEECcCCcCC--hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH----
Confidence 8888875433221 11111121 23444 567777766543111111111112333 358889998888743221
Q ss_pred hhhhhhHHHHhhcCCCC-CCCcEEEEeecCCCCCC-cch----hcc-cCCcEEEEcCCCCCCC----CCC-CCC-cc-cc
Q 036448 380 RRKKEKDEQLLKALQLP-LSVEKLGIILYGGNIFP-KWL----TSL-TNLRNLYLRSCVKCEH----LPP-LGK-LP-LE 445 (580)
Q Consensus 380 ~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~lp-~~l----~~l-~~L~~L~L~~~~~l~~----l~~-l~~-l~-L~ 445 (580)
...+...+... ++|+.|++++|.....+ ..+ ..+ ++|++|+|++|..... ++. +.. .+ |+
T Consensus 155 ------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 155 ------SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp ------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred ------HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 23334444444 48999999988875443 233 344 5899999998853221 111 222 24 78
Q ss_pred ceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccc--cccccccCCCCccceeee
Q 036448 446 KLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYR--ITRKENISIMPRLSSLEV 523 (580)
Q Consensus 446 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~--~~~~~~~~~l~~L~~L~l 523 (580)
+|+++++. +...+...... .+..+++|+.|+++++. +..+... ......+..+++|+.|++
T Consensus 229 ~L~Ls~N~-l~~~~~~~l~~---------------~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 229 SLNLCLNC-LHGPSLENLKL---------------LKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp EEECCSSC-CCCCCHHHHHH---------------TTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred EEECcCCC-CCcHHHHHHHH---------------HHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEec
Confidence 88887753 33222111000 02456778888877763 1111110 001123456777888888
Q ss_pred ccCC
Q 036448 524 RSCN 527 (580)
Q Consensus 524 ~~c~ 527 (580)
++|+
T Consensus 292 ~~N~ 295 (362)
T 3goz_A 292 NGKE 295 (362)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 8766
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=1.6e-12 Score=122.55 Aligned_cols=162 Identities=19% Similarity=0.093 Sum_probs=98.8
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccch
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPA 272 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 272 (580)
.+++..+.+..++ .+..+++|++|++++|. +..+| .++.+++|++|++++|. +..+|.
T Consensus 23 ~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-------------------i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~ 80 (263)
T 1xeu_A 23 KQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-------------------IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP 80 (263)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-------------------CCCCT-TGGGCTTCCEEECCSSC-CCCCGG
T ss_pred HHHhcCCCccccc-chhhcCcCcEEECcCCC-------------------cccch-HHhhCCCCCEEECCCCc-cCCChh
Confidence 3444455555544 45667777777777765 66666 57777788888888776 677776
Q ss_pred hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeCCCCCCChhHHHh
Q 036448 273 GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEGLGNVLYLDEVER 352 (580)
Q Consensus 273 ~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~ 352 (580)
++++++|++|++++| .+..+|.... ++|++|++..+... .+..
T Consensus 81 -l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~l~-------~~~~-------------------------- 123 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNELR-------DTDS-------------------------- 123 (263)
T ss_dssp -GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSCCS-------BSGG--------------------------
T ss_pred -hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEccCCccC-------CChh--------------------------
Confidence 777888888888877 4555554322 66666653221111 0111
Q ss_pred cccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCC
Q 036448 353 LQLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVK 432 (580)
Q Consensus 353 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 432 (580)
+..+++|+.|+++.|.+... ..+..+++|+.|++++|....+ ..+..+++|+.|++++|..
T Consensus 124 --l~~l~~L~~L~Ls~N~i~~~----------------~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 124 --LIHLKNLEILSIRNNKLKSI----------------VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp --GTTCTTCCEEECTTSCCCBC----------------GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred --hcCcccccEEECCCCcCCCC----------------hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 23344555555555542211 1344566777777777777666 5567788888888888743
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.25 E-value=1.7e-11 Score=112.14 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=58.0
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCcccccc-
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRNLKEL- 270 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l- 270 (580)
.++..++.+..+|..+. ++|+.|++++|+ +..+|. .+..+++|++|+|++|. +..+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-------------------i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~ 72 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-------------------IKVIPPGAFSPYKKLRRIDLSNNQ-ISELA 72 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-------------------CCEECTTSSTTCTTCCEEECCSSC-CCEEC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-------------------CCCcCHhHhhCCCCCCEEECCCCc-CCCcC
Confidence 45556666666666543 567777666665 555554 46677777777777776 4444
Q ss_pred chhhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCC
Q 036448 271 PAGIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLD 308 (580)
Q Consensus 271 p~~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 308 (580)
|..+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 73 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred HHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 566777777777777777 45555544 34555555554
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=5.4e-11 Score=108.76 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch--hhccCCCccEEeccCCcccccc
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK--TLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~l 270 (580)
.++++++.++.+|..+. ..+++|++++|+ ++.++. .+.++++|++|+|++|. +..+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-------------------l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i 72 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNE-------------------FTVLEATGIFKKLPQLRKINFSNNK-ITDI 72 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-------------------CCEECCCCCGGGCTTCCEEECCSSC-CCEE
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCc-------------------CCccCchhhhccCCCCCEEECCCCc-CCEE
Confidence 57777777777776553 345677666665 555532 26777888888888777 5555
Q ss_pred ch-hhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCC
Q 036448 271 PA-GIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLD 308 (580)
Q Consensus 271 p~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 308 (580)
|. .++.+++|++|++++| .+..+|. .++.+++|++|+
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 54 5777888888888877 3444443 355666666655
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=3.6e-11 Score=104.97 Aligned_cols=99 Identities=24% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCceEEEEEEecCCC--cCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGT--SFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
+.++++|+++++.+. .+|..+..+++|++|++++|.+ ..+ ..++.+++|++|++++|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------------------~~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------------------ISV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------------------CCC-SSCCCCSSCCEEEEESCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------------------CCh-hhhccCCCCCEEECcCCc
Confidence 688999999999998 7888889999999999999873 333 334555555555555555
Q ss_pred cccc-cchhhhcccCCCeEEcCCCCCCccCc--ccCCCCCCCCcCC
Q 036448 266 NLKE-LPAGIGKLKNMRSLLNGETDSLKYMP--VGISKLTSLRTLD 308 (580)
Q Consensus 266 ~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~ 308 (580)
+.. +|..++.+++|++|++++| .+..+| ..+..+++|++|+
T Consensus 83 -l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 83 -IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp -CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEE
T ss_pred -CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEE
Confidence 333 4444444555555555555 344433 3455555555555
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.1e-11 Score=133.90 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=47.0
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..++++|++..+.+...+..+.....|+.+.+.. ++++.+. +...|..+..+.+|++|+|++|. +
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~------------~~~~~n~--~~~~~~~~~~l~~L~~L~Ls~n~-l 236 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDE------------DDDIENR--MVMPKDSKYDDQLWHALDLSNLQ-I 236 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSC-C
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccC------------ccccccc--eecChhhhccCCCCcEEECCCCC-C
Confidence 4568888888888776665544444444433322 2333333 55566778888888999998888 7
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
..+|..++++++|++|+|++| .+..+|..++.|++|++|++
T Consensus 237 ~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 237 FNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp SCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEEC
T ss_pred CCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeC
Confidence 788888888888999999888 56688888888888888874
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=2e-11 Score=110.78 Aligned_cols=37 Identities=8% Similarity=-0.182 Sum_probs=17.5
Q ss_pred CCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCC
Q 036448 395 LPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLP 437 (580)
Q Consensus 395 ~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~ 437 (580)
.+++|+.|++++|.. ...+++|+.|+++.|...+.+|
T Consensus 146 ~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceee
Confidence 344455555554422 2234555555555554444443
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=6.9e-11 Score=108.84 Aligned_cols=94 Identities=27% Similarity=0.418 Sum_probs=61.9
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.++.+++.+..+|..+. ++|++|++++|+ +..+ |..+..+++|++|+|++|. +..+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-------------------i~~~~~~~~~~l~~L~~L~L~~N~-l~~i 79 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-------------------ITKLEPGVFDSLINLKELYLGSNQ-LGAL 79 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCc-------------------cCccCHHHhhCccCCcEEECCCCC-CCCc
Confidence 346666667777776553 677777777775 4444 4557777888888888777 6666
Q ss_pred chh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCC
Q 036448 271 PAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLD 308 (580)
Q Consensus 271 p~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 308 (580)
|.. +..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 654 467788888888777 45555443 45555555555
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.17 E-value=1.2e-10 Score=105.52 Aligned_cols=69 Identities=30% Similarity=0.445 Sum_probs=49.2
Q ss_pred eecccccccccccchhhccCCCccEEeccCCccccccchh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCC
Q 036448 234 SSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLD 308 (580)
Q Consensus 234 L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 308 (580)
++.+++. ++.+|..+ ..+|++|++++|. +..+|.. ++.+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 12 v~c~~~~--l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 12 VECYSQG--RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp EECCSSC--CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCC--ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEE
Confidence 3444444 77888655 4589999999988 6677654 578999999999988 45555544 46667777666
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.6e-11 Score=103.50 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCceEEEEEEecCCC--cCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGT--SFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~ 265 (580)
+.++++|+++++.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~~-~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------------------LTSI-ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------------------CCCC-TTCCCCTTCCEEECCSSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------------------CCCc-hhhhcCCCCCEEECCCCc
Confidence 578999999999998 688888999999999999986 4444 456777777777777777
Q ss_pred cccc-cchhhhcccCCCeEEcCCCCCCccCc--ccCCCCCCCCcCCce
Q 036448 266 NLKE-LPAGIGKLKNMRSLLNGETDSLKYMP--VGISKLTSLRTLDKF 310 (580)
Q Consensus 266 ~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~~ 310 (580)
+.. +|..++.+++|++|++++| .+..+| ..++.+++|++|++.
T Consensus 76 -i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 76 -VSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp -CCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECT
T ss_pred -ccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCc
Confidence 444 6666666777777777777 345443 567777777777643
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=8.9e-11 Score=116.25 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=57.9
Q ss_pred EEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hc-cCCCccEEeccCCcccccc
Q 036448 193 HLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LC-ELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~l 270 (580)
.++++++.+..+|..+. +.++.|++++|+ ++.+|.. +. ++++|++|+|++|. +..+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-------------------l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i 79 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-------------------LSRLRAEWTPTRLTNLHSLLLSHNH-LNFI 79 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-------------------CCEECTTSSSSCCTTCCEEECCSSC-CCEE
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-------------------CCccChhhhhhcccccCEEECCCCc-CCcc
Confidence 56666666666666543 346666666664 5555544 33 67777777777776 5555
Q ss_pred c-hhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCc
Q 036448 271 P-AGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDK 309 (580)
Q Consensus 271 p-~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~ 309 (580)
| ..+..+++|++|++++| .+..+|. .+..+++|++|++
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred ChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC
Confidence 5 34667777777777777 3444443 3566666666653
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=2e-10 Score=105.65 Aligned_cols=103 Identities=25% Similarity=0.341 Sum_probs=70.3
Q ss_pred cCCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccC
Q 036448 186 SFGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRR 263 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~ 263 (580)
..+.+++.|++++|.+..+ |..+..+++|++|++++|+ +..+|.. +..+++|++|+|++
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-------------------l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-------------------LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-------------------CCCcChhhcccCCCcCEEECCC
Confidence 3468999999999999986 6678999999999999997 4455433 45566666666666
Q ss_pred Cccccccchh-hhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 264 CRNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 264 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
|. +..+|.. +..+++|++|++++| .+..+|..+..+++|++|++
T Consensus 98 N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 98 NQ-LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLAL 142 (229)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEEC
T ss_pred Cc-CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEEC
Confidence 65 5555443 355666666666666 44556666666666666653
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=1.9e-10 Score=105.13 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=84.6
Q ss_pred CCCceEEEEEEecCCCcCcc-cccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSFPM-SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~ 264 (580)
.+..++.|++++|.+..++. .+..+++|++|++++|+ +..+ |..+..+++|++|+|++|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-------------------i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-------------------ISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-------------------CCEECTTTTTTCSSCCEEECCSS
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-------------------CCCcCHHHhhCCcCCCEEECCCC
Confidence 46789999999999998765 78999999999999987 5555 667889999999999998
Q ss_pred ccccccchh-hhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 265 RNLKELPAG-IGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 265 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
. +..+|.. +..+++|++|++++|......|..+..+++|++|++.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 8 7788876 4779999999999984433345568888888888743
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.4e-10 Score=121.30 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=80.1
Q ss_pred ceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccc
Q 036448 190 KVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 190 ~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.++.|++++|.+..+|. +..+++|++|++++|+ ++.+|..++++++|++|+|++|. +..
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-------------------l~~lp~~~~~l~~L~~L~Ls~N~-l~~ 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-------------------LRALPPALAALRCLEVLQASDNA-LEN 500 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-------------------CCCCCGGGGGCTTCCEEECCSSC-CCC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-------------------ccccchhhhcCCCCCEEECCCCC-CCC
Confidence 57788888888888876 8888888888888776 77888888888889999998887 777
Q ss_pred cchhhhcccCCCeEEcCCCCCCccC--cccCCCCCCCCcCCce
Q 036448 270 LPAGIGKLKNMRSLLNGETDSLKYM--PVGISKLTSLRTLDKF 310 (580)
Q Consensus 270 lp~~i~~l~~L~~L~l~~~~~~~~l--p~~i~~L~~L~~L~~~ 310 (580)
+| .++++++|++|++++| .+..+ |..++.+++|+.|++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECT
T ss_pred Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEec
Confidence 88 6888888999998888 55555 7888888888888743
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=1.2e-10 Score=101.51 Aligned_cols=132 Identities=21% Similarity=0.221 Sum_probs=102.7
Q ss_pred CCCCCCCcEEEEeecCCC--CCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceE-eCccccCCCCC
Q 036448 393 LQLPLSVEKLGIILYGGN--IFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKR-VGNEFLGIEES 468 (580)
Q Consensus 393 l~~~~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~-~~~~~~~~~~~ 468 (580)
...+++|+.|++++|... .+|..+..+++|++|++++|. ++.++.+..++ |++|+++++. +.. ++.
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------- 89 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDM-------- 89 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCH--------
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHH--------
Confidence 345688999999999887 788888899999999999986 55557788889 9999999764 222 211
Q ss_pred CCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCc----CCCCCCCcce
Q 036448 469 SEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD----YLLQTTTLQD 544 (580)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~----~~~~l~~L~~ 544 (580)
.+..+++|+.|+++++ .++.++. ...+..+++|++|++++|+ +..+|. .+..+++|++
T Consensus 90 ------------~~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 90 ------------LAEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp ------------HHHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCE
T ss_pred ------------HHhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcE
Confidence 1235899999999887 4554431 1356789999999999987 888876 6778999999
Q ss_pred EEEecCcc
Q 036448 545 LTIWKCAL 552 (580)
Q Consensus 545 L~i~~c~~ 552 (580)
|++++|+.
T Consensus 152 L~l~~n~~ 159 (168)
T 2ell_A 152 LDGYDRED 159 (168)
T ss_dssp ETTEETTS
T ss_pred ecCCCCCh
Confidence 99999863
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=6.8e-10 Score=108.40 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=139.3
Q ss_pred CCceEEEEEEecCCCcCcccccC-CCcccEEEeccCCccc--cccccee-eecccccccccccchh-hcc--------CC
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRG-LDRLRTLLIYDRSDFN--LSLSSIL-SSFSSSKECIERLPKT-LCE--------LY 254 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~-l~~Lr~L~l~~~~~l~--l~~~~~~-L~l~~~~~~i~~lp~~-i~~--------L~ 254 (580)
..+++.|.+.++-...-...+.. +++|++|++++|++.. .....+. +.+.... ...+|.. |.+ +.
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~--~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYM--ANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEEC--TTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccc--ccccCHHHhcccccccccccC
Confidence 34677777776522111112233 7788899888886541 1111110 0111111 2244543 667 89
Q ss_pred CccEEeccCCccccccch-hhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCceeecCccCCCCccChhhhhcCCc
Q 036448 255 NLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQL 332 (580)
Q Consensus 255 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~ 332 (580)
+|+.|+|.+ . +..++. .+..|++|+.++++++. +..++. .+..+.++..+.... ......+..
T Consensus 102 ~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~------------~~~~~~~~~ 166 (329)
T 3sb4_A 102 TLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGS------------SDAYRFKNR 166 (329)
T ss_dssp TCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTC------------THHHHTSTT
T ss_pred CCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcc------------hhhhhcccc
Confidence 999999998 4 777775 47789999999999884 434443 455555555444211 000000000
Q ss_pred CCceeEeCCCCCCChhHHHhcccccccccc-eeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCC
Q 036448 333 VRECGIEGLGNVLYLDEVERLQLYNQQNLL-RLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNI 411 (580)
Q Consensus 333 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 411 (580)
+. ...+.++..|+ .+.+.... .........-..+.+++.+.+.+.-...
T Consensus 167 i~-----------------~~~f~~~~~L~~~i~~~~~~-------------~l~~~~~~~~~~~~~~~~l~~~~~l~~~ 216 (329)
T 3sb4_A 167 WE-----------------HFAFIEGEPLETTIQVGAMG-------------KLEDEIMKAGLQPRDINFLTIEGKLDNA 216 (329)
T ss_dssp TT-----------------TSCEEESCCCEEEEEECTTC-------------CHHHHHHHTTCCGGGCSEEEEEECCCHH
T ss_pred cc-----------------ccccccccccceeEEecCCC-------------cHHHHHhhcccCccccceEEEeeeecHH
Confidence 10 11122222222 11111100 0111112222233444444444332111
Q ss_pred CCcchh-cccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcc
Q 036448 412 FPKWLT-SLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPK 487 (580)
Q Consensus 412 lp~~l~-~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (580)
-...+. .+++|+.|+|++|. ++.++. +..++ |+.+.+.+ +++.++... +.++++
T Consensus 217 ~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~a-------------------F~~~~~ 274 (329)
T 3sb4_A 217 DFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRV-------------------FSNCGR 274 (329)
T ss_dssp HHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-------------------TTTCTT
T ss_pred HHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceehHHH-------------------hhCChh
Confidence 011111 24555555555542 333332 34444 55555554 244444332 346677
Q ss_pred cc-cccccccccccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceEE
Q 036448 488 LK-SLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLT 546 (580)
Q Consensus 488 L~-~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~ 546 (580)
|+ .+.+.+ +++.+. +.++..+++|+.|++.++. ++.++. .+.++++|+.++
T Consensus 275 L~~~l~l~~--~l~~I~-----~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIE-----FGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT--TCCEEC-----TTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc--cceEEc-----hhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 77 777655 444432 3467788999999998755 888877 556788888875
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=103.40 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=72.4
Q ss_pred cCCCceEEEEEEecCCCcCcc--cccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEecc
Q 036448 186 SFGDKVRHLGLNFQRGTSFPM--SIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIR 262 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~ 262 (580)
..+..++.|++++|.+..++. .+..+++|++|++++|+ ++.+|. .++.+++|++|+|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------------------i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------------------ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------------------CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------------------CCEECHHHhCCCCCCCEEECC
Confidence 346678999999999998743 47899999999999987 555544 46677777777777
Q ss_pred CCccccccch-hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCc
Q 036448 263 RCRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDK 309 (580)
Q Consensus 263 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 309 (580)
+|. +..+|. .+..+++|++|++++|......|..+..+++|++|++
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 776 554444 3666777777777777333333555667777777664
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=2.5e-10 Score=100.43 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
..+++.|++++|.+..+|......++|++|++++|. ++.+ ..++.+++|++|++++|. +
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-------------------l~~~-~~l~~l~~L~~L~Ls~N~-l 76 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-------------------IRKL-DGFPLLRRLKTLLVNNNR-I 76 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-------------------CCEE-CCCCCCSSCCEEECCSSC-C
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-------------------CCcc-cccccCCCCCEEECCCCc-c
Confidence 578899999999998876533334499999999886 4444 345666666666666665 5
Q ss_pred cccchhh-hcccCCCeEEcCCCCCCccCcc--cCCCCCCCCcCCc
Q 036448 268 KELPAGI-GKLKNMRSLLNGETDSLKYMPV--GISKLTSLRTLDK 309 (580)
Q Consensus 268 ~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~ 309 (580)
..+|+.+ +.+++|++|++++| .+..+|. .++.+++|+.|++
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEEC
T ss_pred cccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEe
Confidence 5555444 56666666666666 4455554 5566666666653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=1.1e-10 Score=99.64 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=31.9
Q ss_pred ccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 245 RLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 245 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
.+|..++.+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..++.+++|++|+
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred HHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 555555666666666666665 4444 4455666666666666632222333333344444443
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.01 E-value=4.1e-10 Score=111.43 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred cCCCceEEEEEEecCCCcCccc-cc-CCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEecc
Q 036448 186 SFGDKVRHLGLNFQRGTSFPMS-IR-GLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIR 262 (580)
Q Consensus 186 ~~~~~~~~L~l~~~~~~~~~~~-~~-~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~ 262 (580)
..+..++.|++++|.+..++.. +. .+++|++|++++|+ +..+|. .+.++++|++|+|+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-------------------i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-------------------LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-------------------CCEECTTTTTTCTTCCEEECC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-------------------CCccChhhccCCCCCCEEECC
Confidence 3467799999999999987665 44 89999999999987 566653 47778888888888
Q ss_pred CCccccccch-hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeecCccCCCCccChhhhhcCCcCCceeEeC
Q 036448 263 RCRNLKELPA-GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVGGGVDGSNTCRLESLKNLQLVRECGIEG 340 (580)
Q Consensus 263 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~ 340 (580)
+|. +..+|. .+..+++|++|++++|......|..+..+++|+.|++.. +.........+..+..++.|+.+++.+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ--NQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC--CcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 877 666654 467788888888888743333355677778888777432 222111112222224455555555544
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=3e-10 Score=122.70 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=74.8
Q ss_pred cccccCCCcccEEEeccCCcccccccce------eeecccccccccccchhhccCCCccEEeccCCccccccchhhhccc
Q 036448 205 PMSIRGLDRLRTLLIYDRSDFNLSLSSI------LSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLK 278 (580)
Q Consensus 205 ~~~~~~l~~Lr~L~l~~~~~l~l~~~~~------~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 278 (580)
+..+..+++|++|++++|++..++...+ .|+|++|. +..+|..|++|++|++|+|++|. +..+|..+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS--LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC--CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc--CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3444555555555555554433332211 15555555 88999999999999999999998 779999999999
Q ss_pred CCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 279 NMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 279 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
+|++|+|++| .+..+|.+|+.|++|++|++.
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEEeCC
Confidence 9999999999 678999999999999999853
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=97.05 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=65.1
Q ss_pred CCceEEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccch-hhccCCCccEEeccCCcc
Q 036448 188 GDKVRHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPK-TLCELYNLQKLDIRRCRN 266 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 266 (580)
+..++.|++++|.+..+|..+..+++|++|++++|+ ++.++. .|..+++|++|+|++|.
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-------------------i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-------------------ISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-------------------CCEeCHhHccCCCCCCEEECCCCc-
Confidence 456677777777776666666677777777666665 555543 36677777777777776
Q ss_pred ccccch-hhhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCc
Q 036448 267 LKELPA-GIGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDK 309 (580)
Q Consensus 267 l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~ 309 (580)
+..+|+ .+..+++|++|++++| .+..+|.. +..+++|+.|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEe
Confidence 555543 4666777777777776 45555543 566666666653
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=5.8e-10 Score=98.01 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=103.7
Q ss_pred cCCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCCCCCcc-ccceecccccCceEeCccccCCCCCCC
Q 036448 392 ALQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPPLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSE 470 (580)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~ 470 (580)
.+..+.+|+.|++++|....+|......++|+.|++++|. ++.++.+..++ |++|+++++. +..++...
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~-------- 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL-------- 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCH--------
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcch--------
Confidence 3456788999999999888886543344599999999984 45557888899 9999999864 54443221
Q ss_pred CCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcC----CCCCCCcceEE
Q 036448 471 DGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY----LLQTTTLQDLT 546 (580)
Q Consensus 471 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~----~~~l~~L~~L~ 546 (580)
+..+++|+.|+++++ .+..++. ...+..+++|+.|++++|+ +..+|.. +..+++|+.|+
T Consensus 84 -----------~~~l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 84 -----------DQALPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp -----------HHHCTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred -----------hhcCCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeC
Confidence 257899999999886 3444332 1246689999999999988 7888875 77899999999
Q ss_pred EecCcchHHH
Q 036448 547 IWKCALLENR 556 (580)
Q Consensus 547 i~~c~~l~~~ 556 (580)
+++++.-+..
T Consensus 147 ~~~n~~~~~~ 156 (176)
T 1a9n_A 147 FQKVKLKERQ 156 (176)
T ss_dssp TEECCHHHHH
T ss_pred CCcCCHHHHH
Confidence 9998754433
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=1.5e-09 Score=96.71 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=56.3
Q ss_pred CceEEEEEEecCCCcCccc--ccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCc
Q 036448 189 DKVRHLGLNFQRGTSFPMS--IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCR 265 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~~~~--~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 265 (580)
..++.|++++|.+..++.. +..+++|++|++++|+ ++.+ |..++.+++|++|+|++|.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-------------------LTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-------------------CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-------------------CCCcCHhHcCCcccCCEEECCCCc
Confidence 3555566665555554432 5555556655555554 4444 4456666666666666666
Q ss_pred cccccch-hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCC
Q 036448 266 NLKELPA-GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 266 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
+..+|. .++.+++|++|++++|......|..++.+++|++|+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 444433 355666666666666643333455566666666665
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=3e-09 Score=94.77 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=79.0
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELP 271 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 271 (580)
+.++++++.+..+|..+. ++|++|++++|+ ++.+|..+..+++|++|+|++|. +..++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-------------------i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~ 70 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-------------------FTLVPKELSNYKHLTLIDLSNNR-ISTLS 70 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-------------------CCSCCGGGGGCTTCCEEECCSSC-CCCCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-------------------CchhHHHhhcccCCCEEECCCCc-CCEeC
Confidence 467888888888887653 688998888876 88899889999999999999998 76666
Q ss_pred -hhhhcccCCCeEEcCCCCCCccCcc-cCCCCCCCCcCCce
Q 036448 272 -AGIGKLKNMRSLLNGETDSLKYMPV-GISKLTSLRTLDKF 310 (580)
Q Consensus 272 -~~i~~l~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~~~ 310 (580)
..+..+++|++|++++| .+..+|. .+..+++|++|++.
T Consensus 71 ~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECC
T ss_pred HhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECC
Confidence 46899999999999999 4555554 68899999998843
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=2e-09 Score=95.96 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=78.1
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh--hccCCCccEEeccCCccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT--LCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~ 269 (580)
+.++++++.+..+|..+.. +|++|++++|+ +..+|.. ++.+++|++|+|++|. +..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-------------------i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 68 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-------------------LGRISSDGLFGRLPHLVKLELKRNQ-LTG 68 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-------------------CCSBCCSCSGGGCTTCCEEECCSSC-CCC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-------------------CCccCCccccccCCCCCEEECCCCC-CCC
Confidence 5788888888888886644 88999888886 7777764 8999999999999998 555
Q ss_pred c-chhhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCce
Q 036448 270 L-PAGIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDKF 310 (580)
Q Consensus 270 l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~~ 310 (580)
+ |..++.+++|++|++++|. +..++ ..++.+++|++|++.
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECC
T ss_pred cCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECC
Confidence 5 7789999999999999994 55554 458889999998843
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=2.5e-09 Score=93.54 Aligned_cols=96 Identities=27% Similarity=0.417 Sum_probs=77.3
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.++++++.+..+|..+. ++|++|++++|+ +..+ |..++++++|++|+|++|. +..+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-------------------ITKLEPGVFDHLVNLQQLYFNSNK-LTAI 72 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-------------------ccccCHHHhcCCcCCCEEECCCCC-CCcc
Confidence 568888888888888764 788888888886 6666 4568899999999999987 8888
Q ss_pred chhh-hcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCce
Q 036448 271 PAGI-GKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKF 310 (580)
Q Consensus 271 p~~i-~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~ 310 (580)
|..+ .++++|++|++++| .+..+|.. +..+++|++|++.
T Consensus 73 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 73 PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECC
T ss_pred ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeC
Confidence 8764 78999999999998 66677765 8888888888743
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=7.4e-11 Score=106.01 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=63.9
Q ss_pred ceEEEEEEec--CCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccc
Q 036448 190 KVRHLGLNFQ--RGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNL 267 (580)
Q Consensus 190 ~~~~L~l~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 267 (580)
.++...+.+. .++.+|..+..+++|++|++++|+ +..+| .++++++|++|++++|. +
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-------------------l~~l~-~~~~l~~L~~L~l~~n~-l 82 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-------------------IEKIS-SLSGMENLRILSLGRNL-I 82 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-------------------ESCCC-CHHHHTTCCEEEEEEEE-E
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-------------------Ccccc-ccccCCCCCEEECCCCC-c
Confidence 3444444443 455566677777788887777664 56666 67777777777777776 6
Q ss_pred cccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 268 KELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 268 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
..+|..+..+++|++|++++| .+..+| .++.+++|++|++.
T Consensus 83 ~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 83 KKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp CSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEES
T ss_pred ccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECC
Confidence 677776666777777777777 455555 46666666666643
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=4e-09 Score=91.88 Aligned_cols=96 Identities=29% Similarity=0.451 Sum_probs=76.6
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeeccccccccccc-chhhccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERL-PKTLCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.++++++.+..+|..+. ++|++|++++|+ +..+ |..+..+++|++|+|++|. +..+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-------------------i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l 69 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-------------------ITKLEPGVFDRLTQLTRLDLDNNQ-LTVL 69 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-------------------CCCCCTTTTTTCTTCSEEECCSSC-CCCC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc-------------------CCccChhhhcCcccCCEEECCCCC-cCcc
Confidence 468888888888887663 788888888876 6666 4558899999999999988 7777
Q ss_pred chh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCce
Q 036448 271 PAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKF 310 (580)
Q Consensus 271 p~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~ 310 (580)
|.. +..+++|++|++++| .+..+|.. +..+++|++|++.
T Consensus 70 ~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 70 PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeC
Confidence 775 478999999999998 56667664 7888888888743
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=7.7e-09 Score=90.86 Aligned_cols=101 Identities=28% Similarity=0.418 Sum_probs=70.6
Q ss_pred CCceEEEEEEecCCCcCccc-ccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCc
Q 036448 188 GDKVRHLGLNFQRGTSFPMS-IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCR 265 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 265 (580)
+..+++|+++++.+..+|.. +..+++|++|++++|+ ++.+|.. ++.+++|++|++++|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-------------------IQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-------------------ceEeChhHccCCCccCEEECCCCC
Confidence 46777777777777766543 4677777777777765 6666654 5778888888888877
Q ss_pred cccccchh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCc
Q 036448 266 NLKELPAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDK 309 (580)
Q Consensus 266 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~ 309 (580)
+..+|.. ++.+++|++|++++| .+..+|.. +..+++|++|++
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 88 -LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred -ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEe
Confidence 6666654 567888888888887 55566655 466777777764
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=2.4e-08 Score=87.19 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~ 264 (580)
.+..++.|++++|.+..+ |..+..+++|++|++++|+ +..+|.. +.++++|++|+|++|
T Consensus 31 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-------------------LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-------------------CCccChhHhCCcchhhEEECCCC
Confidence 468899999999999987 5678999999999999987 8888876 589999999999999
Q ss_pred ccccccchh-hhcccCCCeEEcCCCCCCccCcc
Q 036448 265 RNLKELPAG-IGKLKNMRSLLNGETDSLKYMPV 296 (580)
Q Consensus 265 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~ 296 (580)
. +..+|.. +..+++|++|++++| .+...+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred c-cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 8 8888876 889999999999999 4444443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.68 E-value=5.1e-08 Score=85.58 Aligned_cols=96 Identities=28% Similarity=0.403 Sum_probs=76.5
Q ss_pred EEEEEEecCCCcCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCcccccc
Q 036448 192 RHLGLNFQRGTSFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKEL 270 (580)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l 270 (580)
+.+++.++.+..+|..+ .++|++|++++|+ +..+|.. ++.+++|++|++++|. +..+
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 67 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-------------------LQSLPHGVFDKLTQLTKLSLSQNQ-IQSL 67 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-------------------CCCCCTTTTTTCTTCSEEECCSSC-CCCC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-------------------ccEeCHHHhcCcccccEEECCCCc-ceEe
Confidence 46778888888888655 3789999888876 6677754 6899999999999998 7777
Q ss_pred chh-hhcccCCCeEEcCCCCCCccCccc-CCCCCCCCcCCce
Q 036448 271 PAG-IGKLKNMRSLLNGETDSLKYMPVG-ISKLTSLRTLDKF 310 (580)
Q Consensus 271 p~~-i~~l~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~ 310 (580)
|.. ++.+++|++|++++| .+..+|.. ++.+++|++|++.
T Consensus 68 ~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECc
Confidence 765 588999999999999 56666654 6888999988843
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=1.5e-09 Score=97.49 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=57.1
Q ss_pred ccccchhhccCCCccEEeccCCccccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceee
Q 036448 243 IERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVV 312 (580)
Q Consensus 243 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~ 312 (580)
++.+|..++++++|++|++++|. +..+| .+..+++|++|++++| .+..+|..+..+++|++|++..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC
Confidence 77888899999999999999998 88898 7999999999999999 56678877777788888875443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=6.7e-08 Score=84.06 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCCceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCC
Q 036448 187 FGDKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRC 264 (580)
Q Consensus 187 ~~~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~ 264 (580)
.+..++.|++++|.+..+ |..+..+++|++|++++|+ +..+|.. +..+++|++|+|++|
T Consensus 28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------------------LTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-------------------CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-------------------cCccChhhccCCCCCCEEECCCC
Confidence 468899999999999997 6678999999999999987 7788876 589999999999999
Q ss_pred ccccccchh-hhcccCCCeEEcCCCC
Q 036448 265 RNLKELPAG-IGKLKNMRSLLNGETD 289 (580)
Q Consensus 265 ~~l~~lp~~-i~~l~~L~~L~l~~~~ 289 (580)
. +..+|.. +..+++|++|++++|.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 8 8888874 8899999999999994
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2.6e-07 Score=90.81 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred EEEEEec-CCCcCcccccCCCcccEEEecc-CCcccccccceeeecccccccccccc-hhhccCCCccEEeccCCccccc
Q 036448 193 HLGLNFQ-RGTSFPMSIRGLDRLRTLLIYD-RSDFNLSLSSILSSFSSSKECIERLP-KTLCELYNLQKLDIRRCRNLKE 269 (580)
Q Consensus 193 ~L~l~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~l~l~~~~~~L~l~~~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~ 269 (580)
.++.+++ .+..+|. +..+++|+.|++++ |+ +..+| ..|+.|.+|++|+|++|. +..
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-------------------l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 70 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-------------------LQHLELRDLRGLGELRNLTIVKSG-LRF 70 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-------------------CCEECGGGSCSCCCCSEEECCSSC-CCE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-------------------CCCcChhHhccccCCCEEECCCCc-cce
Confidence 3567777 7888999 99999999999986 75 77777 458999999999999998 666
Q ss_pred cch-hhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCce
Q 036448 270 LPA-GIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKF 310 (580)
Q Consensus 270 lp~-~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~ 310 (580)
+|+ .+++|++|++|+|++| .+..+|..+.....|+.|++.
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECC
T ss_pred eCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEee
Confidence 654 6789999999999999 677888765544448888743
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=4.7e-06 Score=83.04 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=77.6
Q ss_pred CCCcEEEEeecCCCCC-CcchhcccCCcEEEEcCCCCC----CCCC--CCCCcc-ccceecccccCceEeCccccCCCCC
Q 036448 397 LSVEKLGIILYGGNIF-PKWLTSLTNLRNLYLRSCVKC----EHLP--PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEES 468 (580)
Q Consensus 397 ~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~l----~~l~--~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~ 468 (580)
.+|+.+.+.. ....+ +..+..+++|+.+.+.++... ..++ .+..++ |+.+.+.+ +++.++...
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a------ 318 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL------ 318 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT------
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh------
Confidence 4677777733 33344 345667888888888776432 1222 245566 77777763 466665443
Q ss_pred CCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcC-CCCC-CCcceEE
Q 036448 469 SEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDY-LLQT-TTLQDLT 546 (580)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~-~~~l-~~L~~L~ 546 (580)
+.++++|+.+.+.. +++.+. ..++..+ +|+.+.+.++. +..++.. +..+ .+++.|.
T Consensus 319 -------------F~~c~~L~~l~lp~--~l~~I~-----~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 319 -------------LGGNRKVTQLTIPA--NVTQIN-----FSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp -------------TTTCCSCCEEEECT--TCCEEC-----TTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEE
T ss_pred -------------hcCCCCccEEEECc--cccEEc-----HHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEE
Confidence 44678888888754 344332 3456677 99999999875 6666653 3445 4788998
Q ss_pred EecC
Q 036448 547 IWKC 550 (580)
Q Consensus 547 i~~c 550 (580)
+...
T Consensus 377 vp~~ 380 (401)
T 4fdw_A 377 VPAE 380 (401)
T ss_dssp ECGG
T ss_pred eCHH
Confidence 8763
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=8.9e-07 Score=86.15 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=32.5
Q ss_pred ccccchh-hccCCCccEEeccCCccccccch-hhhcccCCCeEEcCC
Q 036448 243 IERLPKT-LCELYNLQKLDIRRCRNLKELPA-GIGKLKNMRSLLNGE 287 (580)
Q Consensus 243 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~ 287 (580)
++.++.. |..+++|+.|+++++. +..+++ .+..+.++..+....
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTC
T ss_pred ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcc
Confidence 7888765 8899999999999987 555554 455666666666554
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=2.4e-05 Score=77.92 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred cCCCCCCCcEEEEeecCCC-----CC-CcchhcccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccc
Q 036448 392 ALQLPLSVEKLGIILYGGN-----IF-PKWLTSLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEF 462 (580)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~-----~l-p~~l~~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~ 462 (580)
.+..+++|+.+.+.++... .+ +..+..+++|+.+.|.++ ++.++. +..+. |+.+.+.+ +++.++...
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHh
Confidence 3445566666666555443 23 344557778888887742 444332 44556 77777743 355554433
Q ss_pred cCCCCCCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCC-ccceeeecc
Q 036448 463 LGIEESSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMP-RLSSLEVRS 525 (580)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~-~L~~L~l~~ 525 (580)
+.++ +|+.+++.+. .+..+. ...+..++ +++.|.+-.
T Consensus 342 -------------------F~~~-~L~~l~l~~n-~~~~l~-----~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 342 -------------------FNNT-GIKEVKVEGT-TPPQVF-----EKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -------------------SSSS-CCCEEEECCS-SCCBCC-----CSSCCCSCTTCCEEEECG
T ss_pred -------------------CCCC-CCCEEEEcCC-CCcccc-----cccccCCCCCccEEEeCH
Confidence 3355 7888877653 222221 22344453 566776654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2e-07 Score=91.23 Aligned_cols=141 Identities=22% Similarity=0.110 Sum_probs=81.1
Q ss_pred CCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCC-CCCCC--CCcc-ccceecccccCceEeCcc-ccCCCC
Q 036448 393 LQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCE-HLPPL--GKLP-LEKLVIIHLKSVKRVGNE-FLGIEE 467 (580)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~-~l~~l--~~l~-L~~L~l~~~~~l~~~~~~-~~~~~~ 467 (580)
+..+++|+.|.++++....+|. + .+++|++|+|..|.... .+..+ ..+| |++|+|+...+.. .+.. ......
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHHHHHH
Confidence 3456788888888775445554 3 37888888888764221 11112 2577 8888875321110 0000 000000
Q ss_pred CCCCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCC-----CCcCCCCCCCc
Q 036448 468 SSEDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKA-----LPDYLLQTTTL 542 (580)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----lp~~~~~l~~L 542 (580)
......||+|+.|.+.+|.--........ ....+|+|++|+++.|. ++. ++..+.++++|
T Consensus 245 -----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la---~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 245 -----------LFSKDRFPNLKWLGIVDAEEQNVVVEMFL---ESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp -----------GSCTTTCTTCCEEEEESCTTHHHHHHHHH---HCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTC
T ss_pred -----------HHhcCCCCCcCEEeCCCCCCchHHHHHHH---hCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcc
Confidence 00113689999999987643221111000 11368999999998765 654 45555668899
Q ss_pred ceEEEecCc
Q 036448 543 QDLTIWKCA 551 (580)
Q Consensus 543 ~~L~i~~c~ 551 (580)
+.|++++|.
T Consensus 310 ~~L~L~~n~ 318 (362)
T 2ra8_A 310 KFINMKYNY 318 (362)
T ss_dssp SEEECCSBB
T ss_pred eEEECCCCc
Confidence 999999885
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=3e-06 Score=82.84 Aligned_cols=169 Identities=11% Similarity=0.013 Sum_probs=86.3
Q ss_pred ccccchhhccCCCccEEeccCCcc---------ccccchhhhcccCCCeEEcCCCCCCccCcccCCCCCCCCcCCceeec
Q 036448 243 IERLPKTLCELYNLQKLDIRRCRN---------LKELPAGIGKLKNMRSLLNGETDSLKYMPVGISKLTSLRTLDKFVVG 313 (580)
Q Consensus 243 i~~lp~~i~~L~~L~~L~L~~~~~---------l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~ 313 (580)
+..+..++.++++|+.|.+.+... ...++..+..+++|+.|++++|..+ .+|. + .+++|++|++..++
T Consensus 128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB
T ss_pred HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC
Confidence 445666677888999998865421 1235565677899999999887333 3443 3 37788888754322
Q ss_pred CccCCCCccChhhhh--cCCcCCceeEeCCCC----CCChhHHHhc-ccccccccceeEEEeecccCCchhHHhhhhhhH
Q 036448 314 GGVDGSNTCRLESLK--NLQLVRECGIEGLGN----VLYLDEVERL-QLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKD 386 (580)
Q Consensus 314 ~~~~~~~~~~l~~L~--~L~~L~~l~i~~~~~----~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 386 (580)
.. ...+..+. .+++|+.|.+....+ ......+... ....+++|+.|.+..|.+.+. ..
T Consensus 205 l~-----~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~----------~~ 269 (362)
T 2ra8_A 205 LP-----DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV----------VV 269 (362)
T ss_dssp CC-----HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH----------HH
T ss_pred CC-----hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH----------HH
Confidence 11 22233332 455566655532100 0001111111 112456777777766552100 00
Q ss_pred HHHhhcCCCCCCCcEEEEeecCCCC-----CCcchhcccCCcEEEEcCC
Q 036448 387 EQLLKALQLPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRSC 430 (580)
Q Consensus 387 ~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~ 430 (580)
..+. ....+++|+.|+++.|.... ++..+..+++|+.|+|++|
T Consensus 270 ~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 270 EMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 1111 12345666666666555432 2333345566666666665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.03 E-value=5.8e-06 Score=81.05 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=59.2
Q ss_pred eecccc-cccccccchhhccCCCccEEeccC-Cccccccc-hhhhcccCCCeEEcCCCCCCccCc-ccCCCCCCCCcCCc
Q 036448 234 SSFSSS-KECIERLPKTLCELYNLQKLDIRR-CRNLKELP-AGIGKLKNMRSLLNGETDSLKYMP-VGISKLTSLRTLDK 309 (580)
Q Consensus 234 L~l~~~-~~~i~~lp~~i~~L~~L~~L~L~~-~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~~ 309 (580)
++.++. . ++.+|. +..+.+|++|+|++ |. +..+| ..++.|++|++|+|++| .+..+| ..|++|++|+.|++
T Consensus 13 v~~~~~n~--l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGA--LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCC--CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCC--CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeC
Confidence 344454 4 899999 99999999999997 76 87777 56899999999999999 555555 46899999999985
Q ss_pred e
Q 036448 310 F 310 (580)
Q Consensus 310 ~ 310 (580)
.
T Consensus 88 ~ 88 (347)
T 2ifg_A 88 S 88 (347)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=1.4e-06 Score=74.59 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=45.7
Q ss_pred ccCcccccccccccccccccccccccccccCC----CCccceeeeccCCCCCCCC-cCCCCCCCcceEEEecCcchHH
Q 036448 483 IAFPKLKSLIIGAMEELEEWNYRITRKENISI----MPRLSSLEVRSCNKLKALP-DYLLQTTTLQDLTIWKCALLEN 555 (580)
Q Consensus 483 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~l~~ 555 (580)
..+++|+.|+|++|..+++.... .+.. .++|++|++++|++++.-- ..+..+++|++|++++|+.++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 36777777777777766654331 1222 2478999999998776411 2344588999999999987764
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=7.4e-07 Score=87.93 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=42.7
Q ss_pred cccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCC-----CCcchhcccCCcEEEEcC
Q 036448 355 LYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNI-----FPKWLTSLTNLRNLYLRS 429 (580)
Q Consensus 355 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~ 429 (580)
+..+++|+.|++++|.+.+ .....+...+..+++|+.|++++|.+.. ++..+...++|++|+|++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~----------~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGD----------EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHTCSSCCEEECTTSSCHH----------HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HhcCCCcCEEeCCCCCCCc----------HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 3456778888887776321 1123445556666788888888877643 233444567888888888
Q ss_pred CC
Q 036448 430 CV 431 (580)
Q Consensus 430 ~~ 431 (580)
|.
T Consensus 249 N~ 250 (372)
T 3un9_A 249 NE 250 (372)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=6e-06 Score=70.71 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCccEEeccCCccccc-cchhhhcccCCCeEEcCCCCCCccC-cccCCCC----CCCCcCCceeecCccCCCCccChhhh
Q 036448 254 YNLQKLDIRRCRNLKE-LPAGIGKLKNMRSLLNGETDSLKYM-PVGISKL----TSLRTLDKFVVGGGVDGSNTCRLESL 327 (580)
Q Consensus 254 ~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~l-p~~i~~L----~~L~~L~~~~~~~~~~~~~~~~l~~L 327 (580)
.+|+.||+++|. ++. =-..+..+++|++|++++|..++.- -..+..+ ++|++|++..|...+ ...+..+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT----D~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT----DKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC----HHHHHHG
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC----HHHHHHH
Confidence 468888888887 432 2234677888888888888544421 0113332 246666655554433 4455566
Q ss_pred hcCCcCCceeEeCCCCCCCh
Q 036448 328 KNLQLVRECGIEGLGNVLYL 347 (580)
Q Consensus 328 ~~L~~L~~l~i~~~~~~~~~ 347 (580)
..+++|+.|.+.+|+.+...
T Consensus 136 ~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCEEECCCCCCCCch
Confidence 66666666777766665543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.74 E-value=0.0004 Score=69.14 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=41.2
Q ss_pred cccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceEEEecC
Q 036448 482 VIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKC 550 (580)
Q Consensus 482 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~i~~c 550 (580)
+.++.+|+.+.+.+ .++.+ ...++..+++|+.+.+..+ ++.++. .+.++++|+.+++...
T Consensus 316 F~~c~~L~~i~lp~--~v~~I-----~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEI-----GKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEE-----CTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCC--cccEE-----hHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 34667777777643 23333 2345677889999998653 777776 5567899999999653
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.72 E-value=4.1e-06 Score=82.62 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=32.2
Q ss_pred ccccccccceeEEEeecccCCchhHHhhhhhhHHHHhhcCCCCCCCcEEEEeecCCCC
Q 036448 354 QLYNQQNLLRLRLEFGRVVDGEDEERRRKKEKDEQLLKALQLPLSVEKLGIILYGGNI 411 (580)
Q Consensus 354 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 411 (580)
.+...++|+.|++++|.+.+. ....+...+...++|+.|++++|.+..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~----------g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDT----------AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHH----------HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHH----------HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 345567889999988874321 223444555567789999999887643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=5.8e-05 Score=69.83 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=56.6
Q ss_pred cCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEeccCCccccccchhhhccc--CCCeEEcC
Q 036448 209 RGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDIRRCRNLKELPAGIGKLK--NMRSLLNG 286 (580)
Q Consensus 209 ~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~ 286 (580)
.++++|++|++++|+.-. +..+|..+..+++|++|+|++|. +..+. .+..+. +|++|+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~----------------l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR----------------LDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLD 228 (267)
T ss_dssp HHCTTCCEEECTTSCCCC----------------CGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECT
T ss_pred hhCCCCCEEECCCCCCCC----------------CccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEcc
Confidence 456788888888776311 33455667788889999998887 66653 356665 88888888
Q ss_pred CCCCCccCcc-------cCCCCCCCCcCCc
Q 036448 287 ETDSLKYMPV-------GISKLTSLRTLDK 309 (580)
Q Consensus 287 ~~~~~~~lp~-------~i~~L~~L~~L~~ 309 (580)
+|+....+|. .+..+++|+.||.
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 8865444442 2566777777773
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.51 E-value=0.0011 Score=65.92 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEeecCCCCCC-cchhcccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccccCCCCCC
Q 036448 394 QLPLSVEKLGIILYGGNIFP-KWLTSLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESS 469 (580)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~ 469 (580)
.....++.+...... ++ ..+..+.+|+.+.+.++ ++.++. +.... |+.+.+.+ +++.++...
T Consensus 273 ~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a------- 338 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRS------- 338 (394)
T ss_dssp TTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTT-------
T ss_pred ccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHh-------
Confidence 344555555443321 22 23446778888887653 333332 34445 66666642 355554432
Q ss_pred CCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceE
Q 036448 470 EDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDL 545 (580)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L 545 (580)
+.++.+|+.+.+.. +++.+ ...++..+++|+.+++... ++.+...+.++++|+.+
T Consensus 339 ------------F~~c~~L~~i~lp~--~l~~I-----~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 ------------FRGCTSLSNINFPL--SLRKI-----GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ------------TTTCTTCCEECCCT--TCCEE-----CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred ------------ccCCCCCCEEEECc--cccEe-----hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 34677888887753 24333 2346778899999999752 55555566667777665
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=8.5e-05 Score=65.17 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=42.5
Q ss_pred CCceEEEEEEec-CCCc-----CcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEec
Q 036448 188 GDKVRHLGLNFQ-RGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDI 261 (580)
Q Consensus 188 ~~~~~~L~l~~~-~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L 261 (580)
...+++|+++++ .+.. +...+...++|++|++++|.+-+-. ...+...+...++|++|+|
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g--------------~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV--------------AFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH--------------HHHHHHHHHHCSSCCEEEC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH--------------HHHHHHHHHhCCCcCEEEC
Confidence 345666666666 5543 3334455566666666666421110 2233444445556666666
Q ss_pred cCCccccc-----cchhhhcccCCCeEEc
Q 036448 262 RRCRNLKE-----LPAGIGKLKNMRSLLN 285 (580)
Q Consensus 262 ~~~~~l~~-----lp~~i~~l~~L~~L~l 285 (580)
++|. +.. +...+...++|++|++
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence 6665 322 3344455556666666
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.025 Score=55.92 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=65.0
Q ss_pred chhcccCCcEEEEcCCCCCCCCC--CCCCcc-ccceecccccCceEeCccccCCCCCCCCCCCCCCCCCccccCcccccc
Q 036448 415 WLTSLTNLRNLYLRSCVKCEHLP--PLGKLP-LEKLVIIHLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSL 491 (580)
Q Consensus 415 ~l~~l~~L~~L~L~~~~~l~~l~--~l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 491 (580)
.+..+.+|+.+.+.+.. ..+. .+...+ |+.+.+. ..++.++... +.++.+|+.+
T Consensus 260 aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a-------------------F~~c~~L~~i 316 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS--SRITELPESV-------------------FAGCISLKSI 316 (394)
T ss_dssp TTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTT-------------------TTTCTTCCEE
T ss_pred eeeecccccEEeccccc--ceecCcccccccccccccCC--CcccccCcee-------------------ecCCCCcCEE
Confidence 34466778888776432 2222 233445 6666664 2355554432 3466778888
Q ss_pred cccccccccccccccccccccCCCCccceeeeccCCCCCCCCc-CCCCCCCcceEEEecCc
Q 036448 492 IIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPD-YLLQTTTLQDLTIWKCA 551 (580)
Q Consensus 492 ~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~i~~c~ 551 (580)
.|.. +++.+ ...++..+.+|+++.|.. .++.++. .+.++++|+.+++.+..
T Consensus 317 ~lp~--~v~~I-----~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 317 DIPE--GITQI-----LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECCT--TCCEE-----CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EeCC--cccEe-----hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 7753 23333 234567788999999964 3778876 55678999999998764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.95 E-value=0.00066 Score=62.72 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=59.8
Q ss_pred CCceEEEEEEecCCCcCc---ccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCC--CccEEecc
Q 036448 188 GDKVRHLGLNFQRGTSFP---MSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELY--NLQKLDIR 262 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~--~L~~L~L~ 262 (580)
..+++.|++++|.+..++ ..+..+++|++|++++|+ +..+ ..+..+. +|++|+|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-------------------i~~~-~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-------------------LKSE-RELDKIKGLKLEELWLD 228 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-------------------CCSG-GGGGGGTTSCCSEEECT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-------------------cCCc-hhhhhcccCCcceEEcc
Confidence 468999999999998754 556789999999999997 4444 2244444 99999999
Q ss_pred CCccccccc-------hhhhcccCCCeEEc
Q 036448 263 RCRNLKELP-------AGIGKLKNMRSLLN 285 (580)
Q Consensus 263 ~~~~l~~lp-------~~i~~l~~L~~L~l 285 (580)
+|.....+| ..+..+++|+.||-
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999445555 23678999999974
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.20 E-value=0.0017 Score=56.75 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=65.3
Q ss_pred CCceEEEEEEecCCCc-----CcccccCCCcccEEEeccCCcccccccceeeecccccccccccchhhccCCCccEEec-
Q 036448 188 GDKVRHLGLNFQRGTS-----FPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKTLCELYNLQKLDI- 261 (580)
Q Consensus 188 ~~~~~~L~l~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~i~~L~~L~~L~L- 261 (580)
...+++|++++|.+.. +...+...++|++|++++|.+-+- . ...+...+...++|++|+|
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~------------g--~~~l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS------------G--ILALVEALQSNTSLIELRID 129 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH------------H--HHHHHHGGGGCSSCCEEECC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH------------H--HHHHHHHHHhCCCceEEEec
Confidence 4678999999999875 445566678899999999863211 1 4456777888889999999
Q ss_pred -cCCccccc-----cchhhhcccCCCeEEcCCCC
Q 036448 262 -RRCRNLKE-----LPAGIGKLKNMRSLLNGETD 289 (580)
Q Consensus 262 -~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 289 (580)
++|. +.. +...+...++|++|++++|.
T Consensus 130 ~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 130 NQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7777 432 44556677999999999983
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.019 Score=56.54 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=44.1
Q ss_pred ccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCccccccchhhhcccCCCeEEcC
Q 036448 208 IRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRNLKELPAGIGKLKNMRSLLNG 286 (580)
Q Consensus 208 ~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~ 286 (580)
+....+|+.+.+... ++++++. |.++.+|+.++|..+ +..++.....-.+|+.+.+.
T Consensus 42 ~~~~~~i~~v~ip~~--------------------vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~ 99 (379)
T 4h09_A 42 YKDRDRISEVRVNSG--------------------ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGM 99 (379)
T ss_dssp GGGGGGCSEEEECTT--------------------EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEEC
T ss_pred cccccCCEEEEeCCC--------------------ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECC
Confidence 444566777766554 6777654 777888888888653 55665433222356666665
Q ss_pred CCCCCccCcccCCCCCCCCcCC
Q 036448 287 ETDSLKYMPVGISKLTSLRTLD 308 (580)
Q Consensus 287 ~~~~~~~lp~~i~~L~~L~~L~ 308 (580)
.+ +..++.......+|+.+.
T Consensus 100 ~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 100 ER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp TT--CCEECTTTTTTCCCSEEE
T ss_pred ce--eeEeccceeccCCccccc
Confidence 43 444444433334555554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.80 E-value=0.019 Score=56.89 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=65.1
Q ss_pred CCCCCCCcEEEEeecCCCCCCcchhcccCCcEEEEcCCCCCCCCCC--CCCcc-ccceecccccCceEeCccccCCCCCC
Q 036448 393 LQLPLSVEKLGIILYGGNIFPKWLTSLTNLRNLYLRSCVKCEHLPP--LGKLP-LEKLVIIHLKSVKRVGNEFLGIEESS 469 (580)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~l~~l~~--l~~l~-L~~L~l~~~~~l~~~~~~~~~~~~~~ 469 (580)
+..+.+|+.+.+......--...+.++++|+.+.+.. .+..++. +.... |+.+.+.+ +++.++...
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a------- 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDA------- 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-------
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhH-------
Confidence 4445566666654322211123445677888887753 2333332 34445 77776653 355555433
Q ss_pred CCCCCCCCCCCccccCcccccccccccccccccccccccccccCCCCccceeeeccCCCCCCCCcCCCCCCCcceEEEe
Q 036448 470 EDGPSSSSSSPSVIAFPKLKSLIIGAMEELEEWNYRITRKENISIMPRLSSLEVRSCNKLKALPDYLLQTTTLQDLTIW 548 (580)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~ 548 (580)
+.++.+|+.+.+.. +++.+ ...++..+++|+.+++.++... + ..+....+|+.+.+.
T Consensus 330 ------------F~~C~~L~~i~ip~--sv~~I-----~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 330 ------------FAGCEQLERIAIPS--SVTKI-----PESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp ------------TTTCTTCCEEEECT--TCCBC-----CGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred ------------hhCCCCCCEEEECc--ccCEE-----hHhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 34677888887743 23333 2346778899999999875421 1 234456677777664
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.74 E-value=0.051 Score=53.37 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=44.0
Q ss_pred CceEEEEEEecCCCcC-cccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCcc
Q 036448 189 DKVRHLGLNFQRGTSF-PMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCRN 266 (580)
Q Consensus 189 ~~~~~L~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~~ 266 (580)
.+++.+.+.. .++.+ ..++.++.+|+.+.+..+ ++.++.. |.+. +|+.+.+..+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--------------------v~~Ig~~aF~~c-~l~~i~~~~~-- 101 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--------------------VTSIGDGAFADT-KLQSYTGMER-- 101 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--------------------CCEECTTTTTTC-CCCEEEECTT--
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--------------------ceEechhhhcCC-CCceEECCce--
Confidence 4677777653 34444 346889999999998654 4444433 3333 4555555432
Q ss_pred ccccchhhhcccCCCeEEcCCC
Q 036448 267 LKELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 267 l~~lp~~i~~l~~L~~L~l~~~ 288 (580)
+..++.......+|+.+.+..+
T Consensus 102 l~~I~~~aF~~~~L~~i~lp~~ 123 (379)
T 4h09_A 102 VKKFGDYVFQGTDLDDFEFPGA 123 (379)
T ss_dssp CCEECTTTTTTCCCSEEECCTT
T ss_pred eeEeccceeccCCcccccCCCc
Confidence 4555544444456777766543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.35 E-value=0.05 Score=44.00 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=37.6
Q ss_pred eccccccccc--ccchhhccCCCccEEeccCCccccccchh-hhcccCCCeEEcCCCC
Q 036448 235 SFSSSKECIE--RLPKTLCELYNLQKLDIRRCRNLKELPAG-IGKLKNMRSLLNGETD 289 (580)
Q Consensus 235 ~l~~~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 289 (580)
+-++.+ ++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|++|+|++|+
T Consensus 14 ~Cs~~~--L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 14 DCGRRG--LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp ECCSSC--CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EeCCCC--CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 344444 66 7886432 369999999998 8888875 4678999999999884
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.11 E-value=0.21 Score=40.28 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.7
Q ss_pred EEEEEecCCC--cCcccccCCCcccEEEeccCCcccccccceeeecccccccccccchh-hccCCCccEEeccCCc
Q 036448 193 HLGLNFQRGT--SFPMSIRGLDRLRTLLIYDRSDFNLSLSSILSSFSSSKECIERLPKT-LCELYNLQKLDIRRCR 265 (580)
Q Consensus 193 ~L~l~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~l~l~~~~~~L~l~~~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 265 (580)
+++.+++.++ .+|..+. ++|++|+|++|+ |+.+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-------------------l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-------------------LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-------------------CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-------------------CCccChhhhhhccccCEEEecCCC
Confidence 5666677776 6776542 468888888876 8888866 6789999999999987
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.21 E-value=0.62 Score=40.38 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=6.5
Q ss_pred cCCCccEEeccCCc
Q 036448 252 ELYNLQKLDIRRCR 265 (580)
Q Consensus 252 ~L~~L~~L~L~~~~ 265 (580)
.-+.|++|+|++|.
T Consensus 96 ~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 96 TSPSLRVLNVESNF 109 (197)
T ss_dssp HCSSCCEEECCSSB
T ss_pred cCCccCeEecCCCc
Confidence 33444555554444
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.96 E-value=3.9 Score=38.91 Aligned_cols=119 Identities=13% Similarity=0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCHHHHHH-HHhhhhcccccccccchhHHH-hhhcCCCCcchhhhhhhhcccc
Q 036448 16 PIGRKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQR-ILESEMWKVEEIGQGLLAPLL-LSYNDLPSNSMVKQCFSYCAVF 93 (580)
Q Consensus 16 ~~~~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~~~k~~fl~~~~f 93 (580)
+.+.+|++.|+|.|+++..++..+....+...|.. +.+. ....+...+. +.++ +. ..+..+..+|.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~~--~~--~~~~~l~~la~- 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-------AKGLIMGELEELRRR--SP--RYVDILRAIAL- 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHHH--CH--HHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-------HHHHHHHHHHHHHhC--Ch--hHHHHHHHHHh-
Confidence 56788999999999999999876533222222211 1110 0000111111 2222 44 77888888887
Q ss_pred CCCcccCHHHHHHHHHHcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEEe-cHHHHHH
Q 036448 94 PKNYNMNKEELISLWMAQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCKM-HDIVHDF 162 (580)
Q Consensus 94 ~~~~~i~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m-hdl~~~~ 162 (580)
+ ..+...+.....+.. ... .......+++.|++.+++.... + .+++ |.++++.
T Consensus 294 --g-~~~~~~l~~~~~~~~--~~~----~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~ 347 (350)
T 2qen_A 294 --G-YNRWSLIRDYLAVKG--TKI----PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATV 347 (350)
T ss_dssp --T-CCSHHHHHHHHHHTT--CCC----CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHH
T ss_pred --C-CCCHHHHHHHHHHHh--CCC----CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHH
Confidence 3 245555555443211 011 1234568899999999997652 1 2455 5666654
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=77.17 E-value=4.6 Score=38.55 Aligned_cols=118 Identities=8% Similarity=-0.062 Sum_probs=66.1
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCHHHHHHHHhhhhcccccccccchhHHH-hhhc--CCCCcchhhhhhhhccccCC
Q 036448 19 RKIAHKCKGLPLAAKVIGNLLRSKSTGKEWQRILESEMWKVEEIGQGLLAPLL-LSYN--DLPSNSMVKQCFSYCAVFPK 95 (580)
Q Consensus 19 ~~i~~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~~k~~fl~~~~f~~ 95 (580)
.+|++.|+|.|+++..++..+....+...|-.-.- +.....+...+. +.|+ .|+. ..+..+..+|+
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~l~~--~~~~~l~~la~--- 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTL------EYAKKLILKEFENFLHGREIARK--RYLNIMRTLSK--- 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHH------HHHHHHHHHHHHHHHTTCGGGHH--HHHHHHHHHTT---
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHH------HHHHHHHHHHHHHHhhccccccH--HHHHHHHHHHc---
Confidence 78999999999999999988754334334421110 000000111122 2221 5666 77889988887
Q ss_pred CcccCHHHHHHHHH-HcCCccCCCchhHHHHHHHHHHHHHHcCCccccccCCCCCcceEE-ecHHHHHH
Q 036448 96 NYNMNKEELISLWM-AQGYLNTEEDEEMEMIGEEYFNILAARSFFQEFKKDDDDDIMSCK-MHDIVHDF 162 (580)
Q Consensus 96 ~~~i~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mhdl~~~~ 162 (580)
|. +...+..... ..|. .. .......+++.|++.+++..... .++ -|.++++.
T Consensus 302 g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~gli~~~~~-------~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 CG--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKHSWIIKEGE-------KYCPSEPLISLA 355 (357)
T ss_dssp CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHTTSEEESSS-------CEEESSHHHHHH
T ss_pred CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhCCCEEecCC-------EEEecCHHHHHh
Confidence 32 4445443221 1221 01 12345678999999999976531 245 46777764
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=71.60 E-value=1.6 Score=37.71 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=28.3
Q ss_pred ccchhhccCCCccEEeccCCcc--cc-----ccchhhhcccCCCeEEcCCC
Q 036448 245 RLPKTLCELYNLQKLDIRRCRN--LK-----ELPAGIGKLKNMRSLLNGET 288 (580)
Q Consensus 245 ~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~l~~L~~L~l~~~ 288 (580)
.+-..+..-..|++|+|++|.. +. .+-..+..-+.|+.|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3444455566799999987642 22 23344556678999998766
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.25 E-value=32 Score=33.31 Aligned_cols=113 Identities=9% Similarity=-0.076 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcC------CchHHHHHHHHH-h--c---CC--CCHHHHHHHHhhhhcccccccccchhHHHhhhcCCCCc
Q 036448 15 EPIGRKIAHKCK------GLPLAAKVIGNL-L--R---SK--STGKEWQRILESEMWKVEEIGQGLLAPLLLSYNDLPSN 80 (580)
Q Consensus 15 ~~~~~~i~~~c~------GlPLai~~ig~~-L--~---~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 80 (580)
.+....|+++|+ |.|..+..+... . + +. -+.+.+..+..... . ...+.-++..||.
T Consensus 239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~-----~~~~~~~l~~l~~- 308 (412)
T 1w5s_A 239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A-----ASIQTHELEALSI- 308 (412)
T ss_dssp HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH-
T ss_pred hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c-----cchHHHHHHcCCH-
Confidence 356778999999 999765554432 1 1 11 12333433332110 0 2334456788988
Q ss_pred chhhhhhhhccccC--CCcccCHHHHHHHHH--H---cCCccCCCchhHHHHHHHHHHHHHHcCCccccc
Q 036448 81 SMVKQCFSYCAVFP--KNYNMNKEELISLWM--A---QGYLNTEEDEEMEMIGEEYFNILAARSFFQEFK 143 (580)
Q Consensus 81 ~~~k~~fl~~~~f~--~~~~i~~~~Li~~w~--a---~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 143 (580)
..|.++..++.+. .+..+...++...+. + .|. ... .......+++.|++.+++....
T Consensus 309 -~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 309 -HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR----GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp -HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC----CHHHHHHHHHHHHhCCCEEeec
Confidence 7799888888654 233455666554442 1 121 111 1233557899999999998754
No 172
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=53.73 E-value=7.7 Score=20.08 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.5
Q ss_pred hcCCchHHHHHHHHHhcCC
Q 036448 24 KCKGLPLAAKVIGNLLRSK 42 (580)
Q Consensus 24 ~c~GlPLai~~ig~~L~~~ 42 (580)
|-..||||+.++|+.++..
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 4457999999999988755
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.16 E-value=14 Score=34.52 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHcCCccC-CCchhHHHHHHHHHH-HHHHcCCccc
Q 036448 107 LWMAQGYLNT-EEDEEMEMIGEEYFN-ILAARSFFQE 141 (580)
Q Consensus 107 ~w~a~g~~~~-~~~~~~~~~~~~~~~-~L~~~~ll~~ 141 (580)
+-+..|++.. ..+..+.+.|..|++ ++.+|+|+|+
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4566788754 334667788888887 8888888774
Done!