BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036449
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 357 bits (916), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/178 (95%), Positives = 176/178 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 352 bits (902), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 167/178 (93%), Positives = 176/178 (98%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 335 bits (858), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/178 (87%), Positives = 167/178 (93%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MS +RFIKCVTVGDGAVGKTC+LISYT NTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PELKHYAPG+PI+LVGTKL
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLRDDKQF DHPGA I+TAQGEELRK+IGA Y+ECSSKTQQNVKAVFD AIRV L
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 299 bits (766), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 142/178 (79%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
MS S+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G VNLGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKL
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLRDDK + DH I++ QGEELRK IGA AYIECSSKTQQNVKAVFD AI+VVL
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 236 bits (603), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 236 bits (602), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 236 bits (602), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 236 bits (601), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 236 bits (601), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 236 bits (601), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 235 bits (600), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S + IKCV VGDGAVGK CLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDT
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLD
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDDK + PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 234 bits (596), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 233 bits (595), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N P +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 233 bits (594), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 132/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+ VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S ASYENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG L K I + Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 233 bits (593), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 233 bits (593), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 233 bits (593), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DV ++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 233 bits (593), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DV ++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 233 bits (593), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAG ED
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 233 bits (593), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N F +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 232 bits (592), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DV ++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 232 bits (592), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAG ED
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 232 bits (592), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 2/178 (1%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
+ + IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
GQEDY+RLRPLSY DV ++ FSL+S AS+ENV KW PE++H+ P PIILVGTKLDL
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
RDDK + PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+A IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V KW PE++H+ P PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDDK + PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+A IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V KW PE++H+ P PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDDK + PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+A IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AG EDY+RLRPLSY DVF++ FSL+S AS+ +V KW PE++H+ P PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDDK + PI+ QG + K IGA Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 231 bits (590), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + + IG+ Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + + IG+ Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG + + IG+ Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 229 bits (584), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
S+ IKCV VGD AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+ VNLGLWDTA
Sbjct: 6 GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
GQEDY+RLRPLSY DVF++ FSL+S ASYENV KW PE++H+ P PIILVGTKLDL
Sbjct: 66 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
RDDK + PI+ QG L K I + Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+ VNLGLWDTAGQED
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FSL+S ASYENV KW PE++H+ P PIILVGTKLDLRDDK
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ QG L K I + Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/193 (60%), Positives = 137/193 (70%), Gaps = 21/193 (10%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G VNLGLWDTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67 YNRLRPLSY--------------RG-----ADVFILAFSLISKASYENVSKKWIPELKHY 107
Y+RLRPLSY RG ADVF++ FSL+S AS+ENV KW PE++H+
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165
P PIILVGTKLDLRDDK + PI+ QG + K IGA Y+ECS+ TQ+
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDAAIRVVL 178
+K VFD AIR VL
Sbjct: 186 LKTVFDEAIRAVL 198
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 208 bits (530), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65
+KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G LGL+DTAGQE
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
DY+RLRPLSY DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 KQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ ++ PI QG++L K IGA Y+ECS+ TQ+ +K VFD AI +L
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 130/180 (72%), Gaps = 2/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
+SA + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLRDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
S+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTA
Sbjct: 4 GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
GQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DL
Sbjct: 64 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
RDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 125 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 203 bits (517), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 203 bits (517), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V + G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 202 bits (515), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 202 bits (514), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 127/179 (70%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S + IKCV VGDGAVGK CLLISYT+N FP++YVPTVFDN++ V++ G LGL+DT
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LRDD + PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 126 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVP VFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N P++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGD AVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Y+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P P +LVGT++DLRDD
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ PI+ E+L + + A Y+ECS+ TQ+ +K VFD AI L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
+KCV VGDGAVGKT L++SYT+N +PT+Y+PT FDNFSA V V+G V L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
+++LRPL Y D+F+L FS++S +S++NVS+KW+PE++ + P PIILVGT+ DLR+D
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 QFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
+ I D P+ + L + I A +YIECS+ TQ+N+K VFDAAI
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 1 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
SA+ K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWDT
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K D
Sbjct: 65 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 4 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 63 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 122
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 3 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 2 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 1 MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 1 MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 1 MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR+D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR+D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A R L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A R L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGD A GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 2 MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + + P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+RLRPLSY DV ++ FS+ S S EN+ +KW+PE+KH+ P VPIILV K DLR D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ P+ T G + I A Y+ECS+KT++ V+ VF+ A R L
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+A R K V VGD A GKTCLLI ++ + FP YVPTVF+N+ A++ V+G V L LWD
Sbjct: 1 MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
TAGQEDY+R RPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K
Sbjct: 60 TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DLR+D+ + P+ A+G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ + P+ + +G ++ I A Y+ECS+KT++ V+ VF+ A R L
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 179
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI + FP YVPTVF+N+ A+V V+G V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+RLRPLSY ++V ++ FS+ S ENV +KWI E+ H+ GVPIILVG K+DLR+D Q
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 FF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ G P+++ +G+ + IGA Y ECS+KT V+ VF+AA R L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 182 bits (461), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGDGA GKTCLLI + + FP YVPTVF+N+ A++ V+G V L LWDTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPIILVG K DLR+D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 FF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+ P+ +G ++ IGA Y+ECS+KT+ V+ VF+ A R L
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
R +K V VGDG GKT LL+ + FP Y PTVF+ + N+ V G V+L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124
+DY+RLRPL Y A V +L F + S S++N+ +W PE+ H+ VPII+VG K DLR
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
DK + G P++ +G+E+ + +GA AY+ECS++ NV AVF A V L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+ + +K V VGDGAVGKTCLL++++ PT YVPTVF+NFS + L LWDT
Sbjct: 18 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQE+Y+RLRPLSY +DV +L F++ ++ S++N+S KW PE+KHY +LVG K+D
Sbjct: 78 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LR D G+ ++ +G++L + +G AYIE SS + + VF+ ++ +
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
+ + +K V VGDGAVGKTCLL++++ PT YVPTVF+NFS + L LWDT
Sbjct: 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
AGQE+Y+RLRPLSY +DV +L F++ ++ S++N+S KW PE+KHY +LVG K+D
Sbjct: 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
LR D G+ ++ +G++L + +G AYIE SS + + VF+ ++ +
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
M ++ +KC V VGD GKT LL + + FP +YVPTVF+N++A+ ++ + L L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT 118
WDT+G Y+ +RPLSY +D ++ F + + ++V KKW E++ + P ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
K DLR D ++ + P+S QG + K IGA YIECS+ +++ +V+ +F A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
M ++ +KC V VGD GKT LL + + FP +YVPTVF+N++A+ ++ + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT 118
WDT+G Y+ +RPLSY +D ++ F + + ++V KKW E++ + P ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
K DLR D ++ + P+S QG + K IGA YIECS+ +++ +V+ +F A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 3 ASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
+++ +KC V VGD GKT LL + + FP +YVPTVF+N++A+ ++ + L LWD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
T+G Y+ +RPLSY +D ++ F + + ++V KKW E++ + P ++LVG K
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
DLR D ++ + P+S QG + K IGA YIECS+ +++ +V+ +F A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGD GKT +L + +P YVPTVF+N++A + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+ +RPL Y +D +L F + + ++ KKW E+ Y P ++L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
++ H PIS QG + K +GA Y+E S+ T ++++ ++F A + L
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGD GKT +L + +P YVPTVF+N++A + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+ +RPL Y +D +L F + + ++ KKW E+ Y P ++L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
++ H PIS QG + K +GA Y+E S+ T ++++ ++F A + L
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VGD GKT +L + +P YVPTVF+N++A + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
+ +RPL Y +D +L F + + ++ KKW E+ Y P ++L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
++ H PIS QG + K +GA Y+E S+ T ++++ ++F A + L
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
S K + +GDG VGK+ L+ Y +N F T T+ F + ++ V+G V + +WDTA
Sbjct: 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
GQE + LR YRG+D +L FS+ S++N+S W E +YA P +++G
Sbjct: 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K+D+ + + +ST + + + G Y E S+K NV A F+ A+R V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 178 L 178
L
Sbjct: 173 L 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
S K + +GDG VGK+ L+ Y +N F T T+ F + ++ V+G V + +WDTA
Sbjct: 7 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
GQE + LR YRG+D +L FS+ S++N+S W E +YA P +++G
Sbjct: 67 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K+D+ + + +ST + + + G Y E S+K NV A F+ A+R V
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 178 L 178
L
Sbjct: 175 L 175
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
S K + +GDG VGK+ L+ Y +N F + T+ F + ++ V+G V + +WDTA
Sbjct: 9 SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
GQE + LR YRG+D +L FS+ S++N+S W E +YA P +++G
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K D+++ + +ST + + K G Y E S+K NV A F+ A+R +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 178 L 178
L
Sbjct: 177 L 177
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
S +K + +GDG VGK+ L+ Y +N F + T+ F + ++ V+G V L +WDTA
Sbjct: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
GQE + LR YRGAD +L FS+ + S+EN+ W E +YA P +++G
Sbjct: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K+D ++D+Q ++T + + G Y+E S+K NV F+ A+R V
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Query: 178 L 178
L
Sbjct: 173 L 173
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
A + + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
A + + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
A + + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDT 61
S +K + +GD VGK+CLL+ + + F ++ T+ +F V +NG V L LWDT
Sbjct: 4 GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKL 120
AGQE + + YRGA IL + + + ++ N+ K+W + +A ++LVG K
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D+ ++ QGE L K +G P +IE S+K NV +F
Sbjct: 123 DME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + SY NV K+W+ E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K +D+ A +E +G P ++E S+K NV+ F
Sbjct: 128 TKK--VVDNTTA--------KEFADSLGIP-FLETSAKNATNVEQAF 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + SY NV K+W+ E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K +D+ A +E +G P ++E S+K NV+ F
Sbjct: 128 TKK--VVDNTTA--------KEFADSLGIP-FLETSAKNATNVEQAF 163
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWD 60
S +K + +GD VGK+CLL+ + + F ++ T+ +F V +NG V L LWD
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTK 119
TAGQE + + YRGA IL + + + ++ N+ K+W + +A ++LVG K
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D+ ++ QGE L K +G P +IE S+K NV +F
Sbjct: 135 SDME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV NGS+ V
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
+L LWDTAGQE + L +R A F+L F L S+ S+ NV + W+ +L+ Y
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L+G K DL D ++ ++ Q EL G P Y E S+ T QNV+ +
Sbjct: 144 IVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 173 AIRVVL 178
+ +++
Sbjct: 193 LLDLIM 198
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
P + T Q ++L + G P +IE S+KT+Q V F +R +
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+L FS+ S+ + ++ I +K +P+++VG K DL +
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 KQFFIDHPGAVPISTA--QGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q VP+ A + EE Y+E S+KT+ NV VF
Sbjct: 129 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+L FS+ S+ + ++ I +K +P+++VG K DL +
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 KQFFIDHPGAVPISTA--QGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q VP+ A + EE Y+E S+KT+ NV VF
Sbjct: 125 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
+K + +GD VGK+CLL+ + + F ++ T+ +F V +NG V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
+ + YRGA IL + + + ++ N+ K+W + +A ++LVG K D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ QGE L K +G P +IE S+K NV +F
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
+ + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K V VG VGK+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ +R R + F+ F++ + S+E++ ++ I +K + VP++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
P + T Q ++L + G P +IE S+KT+Q V F +R +
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + VGD VGKTCLL+ + F ++ TV +F V+ V+G V L +WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLR 123
E + + YR A +L + + +KAS++N+ + W+ E+ YA V ++L+G K+D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
++ + GE+L K G P ++E S+KT NV F A
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ + + F ++ T+ +F V +NG V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
+ + YRGA IL + + + ++ N+ K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ QGE L K +G P +IE S+K NV +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + + TV L +WDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S++NV K+WI E+ YA V +LVG K DL
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+ +++ +G EL G +IE S+K NV+ F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y R+ YRGA +L + + +YENV ++W+ EL+ +A + I+LVG K DLR
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ E L ++IE S+ NV+ F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNL----SFIETSALDSTNVEEAF 159
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K V +TA+ E +G P ++E S+K NV+ F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD VGK+CLL+ + + F ++ T+ +F V +NG V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
+ + YRGA IL + + + ++ N+ K+W + +A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ QGE L K +G P +IE S+K NV +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+ FS+ S+ + ++ I +K VP +LVG K DL D
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q V + A+ R Y+E S+KT+ NV VF
Sbjct: 139 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+ FS+ S+ + ++ I +K VP +LVG K DL D
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q V + A+ R Y+E S+KT+ NV VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+ FS+ S+ + ++ I +K VP +LVG K DL D
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q V + A+ R Y+E S+KT+ NV VF
Sbjct: 135 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I+LVG K DLR
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + ++IE S+ NV+A F
Sbjct: 139 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 174
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+ FS+ S+ + ++ I +K VP +LVG K DL D
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q V + A+ R Y+E S+KT+ NV VF
Sbjct: 125 RQ--------VSVEEAKN---RADQWNVNYVETSAKTRANVDKVF 158
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + + ++IE S+ NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 183
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +GD GK+ L++ + + F T+ F S + VN +TV +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
Y+ L P+ YRGA I+ F + ++AS+E +KKW+ EL+ P + + L G K DL D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ TA+ + ++E S+KT NVK +F
Sbjct: 133 RKV-----------TAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K V +G+ VGKTCL+ +T FP T+ +F V +NG V L +WDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLR 123
E + + YR A+ IL + + + S+ + +W+ E++ YA V +LVG K+DL
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
+ ++ + A S AQ Y+E S+K NV+ +F D A R++
Sbjct: 145 ERRE--VSQQRAEEFSEAQD---------MYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F +V TV +F + N + L +WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y + YRGA FIL + + ++ S+ N + W ++K Y+ ++LVG K D+ D
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
++ +S+ +G +L +G + E S+K NVK F+ + V+
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+G VGKT L++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
++ L P+ YR ++ IL + + + S++ V K W+ EL K + + +VG K+DL +
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
+ +S + E + +GA Y S+K + ++ +F D R++
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+G VGKT L++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
++ L P+ YR ++ IL + + + S++ V K W+ EL K + + +VG K+DL +
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
+ +S + E + +GA Y S+K + ++ +F D R++
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+G VGKT L++ Y N F ++ T+ +F + + + G VNL +WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
++ L P+ YR ++ IL + + + S++ V K W+ EL K + + +VG K+DL +
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
+ +S + E + +GA Y S+K + ++ +F D R++
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 182
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAG 63
K + +GD VGK+ LL+ + NTF Y+ T+ +F V +NG V L +WDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
QE + + YRG I+ + + S S+ NV K+W+ E+ V ILVG K D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND-- 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
D ++ ++ A + G +L E S+K NV+ +F+ +VL
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQL---------FETSAKENVNVEEMFNCITELVL 170
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I+LVG K DLR
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + ++IE S+ NV+A F
Sbjct: 127 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 162
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ VGK+CLL+ ++ +T+ DY+ T+ +F V ++G TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
E + + YRG+ I+ + + + S+ V K W+ E+ YA + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
D +
Sbjct: 127 DKR 129
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV +G++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L+G K DL D ++ ++ Q EL + G P Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVVL 178
+ +++
Sbjct: 179 LLDLIM 184
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ VGK+CLL+ ++ +T+ DY+ T+ +F V ++G TV L +WDTAGQ
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
E + + YRG+ I+ + + + S+ V K W+ E+ YA + +LVG K DL+
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
D +
Sbjct: 127 DKR 129
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K + VG G VGK+ L + + + F DY PT D++ VV++G V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68 NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
+R +R + F+ FS+ S+ + ++ I +K VP +LVG K DL D
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q V + A+ R Y+E S+KT+ NV VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ VGK+CLL+ ++ +T+ DY+ T+ +F V ++G TV L +WDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
E + + YRG+ I+ + + + S+ V K W+ E+ YA + +LVG K DL+
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 DDK 126
D +
Sbjct: 140 DKR 142
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD VGKTC+L ++ + F + ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
+ + YRGA +L + + ++ S++N+ + WI ++ +A V +++G K D+ D
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q +S +GE+L G ++E S+K NV+ F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 83 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 170
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
IK V VG+GAVGK+ ++ Y F DY T+ D + VN V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+++ + YRGA +L FS + S+E +S W ++ +P LV K+DL DD
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
I + E L K + Y S K NV VF
Sbjct: 125 S----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 15/159 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
+ + Q ++L + G P YIE S+KT+Q V+ F +R
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
K + +GD VGKTC+L ++ + F + ++ T+ +F + ++G + L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
+ + YRGA +L + + ++ S++N+ + WI ++ +A V +++G K D+ D
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q +S +GE+L G ++E S+K NV+ F
Sbjct: 129 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV +G++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L+G K DL D ++ ++ Q EL + G P Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVVL 178
+ +++
Sbjct: 179 LLDLIM 184
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I+LVG K DLR
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + ++IE S+ NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 183
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG + DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I LVG K DLR
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + ++IE S+ NV+A F
Sbjct: 130 --------HLRAVPTDEARAFAEK---NGLSFIETSALDSTNVEAAF 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
IK V +G+ AVGK+ +++ + SN F + PT+ F + V +N TV +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
+ L P YR A ++ + + S+ ++ W+ EL A + I LVG K+D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDX-- 120
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+ G ++ +GE+L + G + E S+KT +NV VF
Sbjct: 121 -----LQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVF 160
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F + T+ F+ ++ V+G T+ +WDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA +L + + +YENV ++W+ EL+ +A + I LVG K DLR
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + ++IE S+ NV+A F
Sbjct: 124 --------HLRAVPTDEARAFAEK---NGLSFIETSALDSTNVEAAF 159
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y P++ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y P++ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 82 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 169
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV +G++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L+G K DL D ++ ++ Q EL + G P Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVV 177
+ ++
Sbjct: 179 LLDLI 183
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F ++ PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DT GQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
IK + +GD VGKT L YT N F ++ TV +F VV +G++ V
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +L+ Y
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L+G K DL D ++ ++ Q EL + G P Y E S+ T QNV+ +
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVV 177
+ ++
Sbjct: 179 LLDLI 183
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ +++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG+E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 14/161 (8%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + + F TDY PT+ D+++ V++ L + DTAGQE++ +R R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+L FS+ + S+E + K + I +K P+IL+G K DL DH V
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADL--------DHQRQV 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ +G++L + + Y+E S+K + NV F +RV+
Sbjct: 129 --TQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVI 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
R K V +G+ +VGKT L+ + ++F Y T+ D S + + TV L LWDTAG
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
QE + L P R + V ++ + + + S+ S KWI +++ V I+LVG K DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D +Q +ST +GE K + +IE S+K NVK +F
Sbjct: 132 SDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTA QE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
K V +G+ +VGKT L+ + ++F Y T+ D S + + TV L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDD 125
+ L P R + V ++ + + + S++ S KWI +++ V I+LVG K DL D
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q I+ +GE+ K + + +IE S+KT NVK +F
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRL 70
+GD VGK+CLL+ + +T+ Y+ T+ +F + ++G T+ L +WDTAGQE + +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F +V TV +F V + + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y + YRGA F+L + + ++ S+ V + W ++K Y+ +ILVG K DL D
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
++ VP G L +G + E S+K NVK VF+ + V+
Sbjct: 142 ER--------VVP--AEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVI 183
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
R K V +G G VGK+ L + + F Y PT+ D++ V V+ L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
E + +R L + F L +S+ +++++ ++ ++ I +K VP+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
D++ + QG+ L + A++E S+K++ NV +F +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y ++F +V TV +F + N + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y + YRGA FIL + + ++ S+ N + W ++K Y+ ++LVG K D D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
++ +S+ +G +L +G + E S+K NVK F+ + V+
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 169
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+ + +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL P
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ T Q ++L + G P +IE S+KT+Q V F +R +
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL P
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ T Q ++L + G P +IE S+KT+Q V F +R +
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
++ + +G VGKT L+ +T +TF TV +F V + G + L +WDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
+N + YR A IL + + K +++++ KW+ + YA ++LVG KLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D++ I+ QGE+ + I + E S+K NV +F
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 81 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
K + +G+ +VGKT L Y +TF +V TV +F V + V L +WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y + YRGA FIL + + ++ S+ N + W ++K Y+ +ILVG K D+ +
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
++ VP T +G+ L + +G + E S+K +V+ F+ + +
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79 DVFILAFSLISKASYE--NVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+ N+ ++ I +K + VP++LVG K DL P
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ T Q EL K G P +IE S+KT+Q V+ F +R +
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI 181
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
R K V +G G VGK+ L + + F +Y PT+ D++ V V+ L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
E + +R L + F L +S+ +++++ ++ ++ I +K VP+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
D++ + QG+ L + A++E S+K++ NV +F +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F + PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL A
Sbjct: 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ + Q ++L + G P YIE S+KT+Q V+ F +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WD 60
SA R +K +GD VGK+ ++ + + F + PT+ +F V G+ ++ L WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTK 119
TAGQE ++ L P+ YRG+ ++ + + + S+ + KKW+ ELK + P + + + G K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
DL D ++ VP+ A+ E + IGA +E S+K N++ +F R +
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELFQGISRQI 184
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTV-NLGLWDTAGQ 64
+K + +GD VGKT L+ Y ++ + Y T+ +F + V V+G V + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTK 119
E + L YRGAD +L + + + +S+EN+ K W E +A P +++G K
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+D + K+ +S +EL K +G S+K NV F+ R L
Sbjct: 128 IDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
R K V +G G VGK+ L + + F Y PT+ D++ V V+ L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
E + +R L + F L +S+ +++++ ++ ++ I +K VP+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
D++ + QG+ L + A++E S+K++ NV +F +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I N F +Y PT+ D++ VV++G T L + DTAG E+Y+ +R R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
+ F+ F++ + S+E++ ++ I +K + VP++LVG K DL P
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
+ T Q ++L + G P +IE S+KT+Q V F +R +
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 181
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 163
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
K V +G+ +VGKT L+ + ++F Y T+ D S + + TV L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDD 125
+ L P R + V ++ + + + S++ + KWI +++ V I+LVG K DL D
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+Q +S +GE K + +IE S+K NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 155
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G GK+CLL + N F D T+ F + VV V G TV L +WDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA +L + + S+ +Y +++ W+ + + A P + +IL G K DL
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+++ F++ AQ EL ++E S+ T +NV+ F R +L
Sbjct: 144 PEREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 187
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTV 54
IK + +GD VGKT +L YT F + ++ TV +F VV G +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH--YAPGVP 112
+L LWDTAG E + L +R A F+L F L ++ S+ NV + WI +L+ Y+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
I+L G K DL D + + + EL + G P Y E S+ N+ +
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEM 178
Query: 173 AIRVVL 178
+ +++
Sbjct: 179 LLDLIM 184
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
Y+ L P+ YRGA I+ + + + ++ +K W+ EL+ A P + I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 161
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
Y+ L P+ YRGA I+ + + + ++ +K W+ EL+ A P + I L G K DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 124 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 159
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
R K V +G VGK+ L + + F Y PT+ D++ V V+ L + DTAG
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
E + +R L + F L +S+ +++++ ++ ++ I +K VP+ILVG K DL
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 122
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
D++ + QG+ L + A++E S+K++ NV +F +R +
Sbjct: 123 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ VGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ VGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ VGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ + E S+KT NV +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSLL----FXETSAKTSXNVNEIFXA 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ VGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
R K V +G+ +VGKT L+ + ++F Y T+ D S + + T+ L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
QE + L P R + ++ + + + S++ + KWI +++ V I+LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D +Q +S +GE K + +IE S+K NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
K V +G+ VGK+ L++ + F T+ F + V ++ +TV +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 14/170 (8%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDT 61
S K + +GD VGK+CLL+ +T F + T+ F A +V ++G + L +WDT
Sbjct: 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKL 120
AGQE + + YRGA +L + + + ++ +++ W+ + + H + + I+L+G K
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
DL + + +GE + G ++E S+KT NV+ F
Sbjct: 137 DLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2 SASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGL 58
SAS+ K V +G+ AVGK+ L++ + F T+ F + +V ++ +TV +
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVG 117
WDTAGQE Y+ L P+ YRGA I+ + + ++ ++ +K W+ EL+ A P + I L G
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
K DL + + + A + ++E S+KT NV +F
Sbjct: 121 NKADLANKRMVEYEEAQAYADDN-----------SLLFMETSAKTAMNVNDLF 162
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
S K + +GD VGK+CLL +T F D T+ F ++ V+G + L +WDTA
Sbjct: 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121
GQE + + YRGA ++ + + +++Y ++S W+ + ++ P IIL+G K D
Sbjct: 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
L + Q + + A + G ++E S+KT +NV+ F A + +
Sbjct: 132 L--EAQRDVTYEEAKQFAEENG---------LLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
R K V +G+ +VGKT L+ + ++F Y T+ D S + + TV L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
E + L P R + V ++ + + + S++ + KWI +++ V I+LVG K DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D +Q +S +GE K + +IE S+K NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
Y+ L P+ YRGA I+ + + ++ S+ +K W+ EL+ A P + I L G K DL +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 R--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 161
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +GD VGK+CLL+ +T F + T+ F A ++ ++G + L +WDTAGQ
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 123
E + + YRGA +L + + + ++ +++ W+ + + H + I+L+G K DL
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ + +GE + G ++E S+KT NV+ F
Sbjct: 129 SRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWD 60
S SR K + +GD VGKTCL + + FP T+ +F V ++G + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61 TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVG 117
TAGQE + + + YR + + + + AS+ ++ WI E K + A +P ILVG
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLR 123
K DLR
Sbjct: 135 NKCDLR 140
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K V VGD +VGKTC++ + + F T+ +F+ + + G V L +WDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YR A+ ILA+ + ++S+ +V WI +++ YA + +L+G K DL
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+ ++ +S A+ + L + IE S+K NV+ F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
R K V +G+ +VGKT L+ + ++F Y T+ D S + + TV L LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
E + L P R + V ++ + + + S++ + KWI +++ V I+LVG K DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D +Q +S +GE K + +IE S+K NVK +F
Sbjct: 134 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
+K + +G+ VGK+ LL+ +T +TF + T+ +F + V+G+ L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLR 123
+ L P YRGA IL + + + ++ + W+ EL+ Y I+ LVG K+D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
++++ +D + + + +IE S+KT V+ F+ + ++
Sbjct: 134 ENRE--VDRNEGLKFARKH---------SXLFIEASAKTCDGVQCAFEELVEKII 177
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
K V +G+ AVGK+ L++ + F T+ F + V ++ +TV +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
Y+ L P+ YRGA I+ + + + ++ +K W+ EL+ A P + I L G K DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
+ AV AQ + L+ ++E S+KT NV +F A
Sbjct: 126 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 161
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T N F D T+ F+ + + G + +WDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA ++ + + +SYEN + W+ EL+ A V + L+G K DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 DDKQFFIDHPGAVPISTAQ--GEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
H AVP ++ +E + L + E S+ +NV F+ I +
Sbjct: 132 --------HLRAVPTEESKTFAQENQLL-----FTETSALNSENVDKAFEELINTI 174
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAG 63
K V +GD VGK+ LL +T + F + T+ F+ + N + +WDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
QE Y + YRGA +L + + K S+EN+ +KW+ EL+ A + I+LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
+ + I+ A A+ E+L A+IE S+ NV+ F
Sbjct: 126 KHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
S K + +GD VGK+CLL +T F D T+ F ++ V+G + L +WDTA
Sbjct: 28 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121
GQ + + YRGA ++ + + +++Y ++S W+ + ++ P IIL+G K D
Sbjct: 88 GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
L + Q + + A + G ++E S+KT +NV+ F A + +
Sbjct: 147 L--EAQRDVTYEEAKQFAEENG---------LLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWD 60
S+ + K V GD AVGK+ L+ N F + T+ +F ++V+G L LWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
TAGQE + + +R AD +L + + + S+ N+ ++W+ ++ A VPI+LVG K
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRV 176
D+RD G + GE+L GA + E S+K N V+AV A V
Sbjct: 143 ADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
SR K + +GD VGKTCL + + FP T+ +F V ++G + + LWDTA
Sbjct: 27 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63 GQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTK 119
GQE + + + YR + + + AS+ ++ WI E K + A +P ILVG K
Sbjct: 87 GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLR 123
DLR
Sbjct: 146 CDLR 149
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
R K V +G+ +VGKT L+ + ++F Y T+ D S + + T+ L LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
E + L P R + ++ + + + S++ + KWI +++ V I+LVG K DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
D +Q +S +GE K + +IE S+K NVK +F
Sbjct: 131 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 13 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP 72
G G VGK+ L++ + TF Y+PTV D + + + S L + DT G + ++
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73 LSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130
LS FIL +S+ S+ S E + + I E+K +PI+LVG K D ++
Sbjct: 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 131 DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
+ +++ E L + A++E S+K NVK +F
Sbjct: 127 -------VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQ 159
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ GK+CLL + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA +L + + S+ +Y N W+ + + A + IIL G K DL
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
D++ F++ AQ EL ++E S+ T +NV+ F R +L
Sbjct: 129 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFVQCARKIL 172
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQED 66
K V +G+ VGKT LL +T N F D T+ FS V+ G+ V +WDTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
Y + YRGA +L F L +Y V ++W+ EL H + ++LVG K DL
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 126 KQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 178
++ VP EE R ++E S+ NV+ F+ ++ +
Sbjct: 131 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YVPT+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + + F +DY PT+ D+++ V+G L + DTAGQE++ +R R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79 DVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
F+L F++ + S+ V K + L+ P++LVG K DL +Q VP
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 138 ISTAQGEELRKLIGAP---AYIECSSKTQQNVKAVFDAAIRVV 177
S A GA AY E S+K + NV F+ +R V
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQED 66
K V +G+ VGKT LL +T N F D T+ FS V+ G+ V +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
Y + YRGA +L F L +Y V ++W+ EL H + ++LVG K DL
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 126 KQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 178
++ VP EE R ++E S+ NV+ F+ ++ +
Sbjct: 146 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YVPT+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
K V +G+ AVGKT ++ + +TF +Y T+ D S + ++ V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAPGVPIILVGTKLDLRDD 125
+ L P R + I+ + + ++ S+EN + KWI + L V I LVG K DL D
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
++ ++ +G + + + E S+K N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNT-XFHETSAKAGHNIKVLF 155
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ GK+CLL + F D T+ F + ++ V G V L +WDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA +L + + S+ +Y N W+ + + A + IIL G K DL
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
D++ F++ AQ EL ++E S+ T ++V+ F R +L
Sbjct: 130 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGEDVEEAFVQCARKIL 173
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
Y LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M+ S +K G VGK+ L++ + + F +Y PT+ + ++ V++ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV--SKKWIPELKHYAPGVPIILVGT 118
TAGQED + R R + F+L + + + S+E V K + E+K V +ILVG
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVV 177
K DL +Q +ST +GE+L + A A+ ECS+ T + N+ +F R V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATEL-ACAFYECSACTGEGNITEIFYELCREV 189
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 126 K 126
K
Sbjct: 123 K 123
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
K
Sbjct: 135 K 135
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
+K + +GD VGKT L+ Y + F Y T+ +F + V+V+ V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
E + L YRGAD +L F + + +++ + W E L +P P +++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+DL + + ++T + + Y E S+K NV+ F R L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
+K + +GD VGKT L+ Y + F Y T+ +F + V+V+ V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
E + L YRGAD +L F + + +++ + W E L +P P +++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+DL + + ++T + + Y E S+K NV+ F R L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K + +G+ GK+CLL + F D T+ F + ++ V G V L +WDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E + + YRGA +L + + S+ +Y N W+ + + A + IIL G K DL
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
D++ F++ AQ EL ++E S+ T ++V+ F R +L
Sbjct: 127 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGEDVEEAFVQCARKIL 170
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
+K + +GD VGKT L+ Y + F Y T+ +F + V+V+ V + +WDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
E + L YRGAD +L F + + +++ + W E L +P P +++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+D + + ++T + + Y E S+K NV+ F R L
Sbjct: 127 IDFENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + F DY PT+ D++ + ++ L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
D F++ +S+ KAS+E+V + + I +K P+ILV K+DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
++ QG+E+ P YIE S+K NV F +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + F DY PT+ D++ + ++ L + DTAGQE+++ +R R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
D F++ +S+ KAS+E+V + + I +K P+ILV K+DL ++
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 135
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
++ QG+E+ P YIE S+K NV F +RV+
Sbjct: 136 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M R+ K V +G VGKT L + F Y PTV + +S V + +L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYNRLRPLSY-RGADVFILAFSLISKASYENVSKKWIP-ELKHYAPGVPIILVGT 118
TAGQ++Y+ L P S+ G ++L +S+ S S++ + + H VP++LVG
Sbjct: 79 TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K DL +++ + +G++L + GA ++E S++ Q + +F I+ +
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEI 185
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ L Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + F +Y PT+ D++ + ++ L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
D F++ +S+ KAS+E+V + + I +K P+ILV K+DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
++ QG+E+ P YIE S+K NV F +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAG 63
R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WDTAG
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
QE + L P+ YRG+ I+ + + + ++ + K W+ EL+ H P + + + G K DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 123 RDDKQ 127
D ++
Sbjct: 123 TDVRE 127
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
K V +GD VGK+ LL +T++ F + T+ F+ + V + +WDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
E Y + YRGA ++ + + +SYEN + W+ EL+ A V + L+G K DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
H AVP A+ + + + E S+ NV F
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 K 126
K
Sbjct: 132 K 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 K 126
K
Sbjct: 126 K 126
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WD 60
SA R +K +GD VGK+ ++ + ++F + PT+ +F V + ++ L WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
TAG E + L P+ YRG+ I+ + + + ++ + K W+ EL+ H P + + + G K
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLRDDKQ 127
DL D ++
Sbjct: 121 CDLTDVRE 128
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F YV T+ V N + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
K
Sbjct: 130 K 130
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L + + + TF Y PT+ D + + V+ S L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
FIL +SL+++ S++++ + I +K Y VP+ILVG K+DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL----------ESER 124
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
+S+++G L + G P ++E S+K++ V +F +R
Sbjct: 125 EVSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
+K + +GD VGKT L+ Y + F Y T+ +F + V+V+ V + +WDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
E + L YRGAD +L F + + +++ + W E L +P P +++G K
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
+DL + + ++T + + Y E S+K NV+ F R L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L I + F +Y PT+ D++ + ++ L + DTAGQE+++ +R R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
D F++ +S+ KAS+E+V + + I +K P+ILV K+DL ++
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
++ QG+E+ P YIE S+K NV F +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + YV T+ V N + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D++D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
K
Sbjct: 135 K 135
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F Y+ T+ + + N + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D+++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 K 126
K
Sbjct: 125 K 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F Y+ T+ + + N + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D+++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 K 126
K
Sbjct: 124 K 124
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
K V VGDG GKT + + + F Y+ T+ + + N + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
+ LR Y A I+ F + S+ +Y+NV W +L +PI+L G K+D+++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 K 126
K
Sbjct: 132 K 132
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M S+ K +G +VGK+ L I + F Y PT+ + F+ + VNG +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVG 117
TAGQ++Y+ + P +Y D+ +IL +S+ S S+E + L +PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K DL ++ IS +G+ L + A A++E S+K Q VF R++
Sbjct: 119 NKKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RII 164
Query: 178 L 178
L
Sbjct: 165 L 165
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
M S+ K +G +VGK+ L I + F Y PT+ + F+ + VNG +L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGT 118
TAGQ++Y+ + P +Y + +IL +S+ S S+E + L +PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
K DL ++ IS +G+ L + A A++E S+K Q VF R++L
Sbjct: 120 KKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 165
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
K+ L++ + TF Y+PT+ D + + + S L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79 DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
FIL FS+ SK S E + K I ++K +P++LVG K D+ Q +D A
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC---DETQREVDTREAQ 137
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
++ A++E S+K NVK +F +
Sbjct: 138 AVAQE---------WKCAFMETSAKMNYNVKELFQELL 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 19/174 (10%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
K +G +VGK+ L I + F Y PT+ + F+ + VNG +L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 NRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRD 124
+ + P +Y D+ +IL +S+ S S+E + L +PI+LVG K DL
Sbjct: 63 S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
++ IS +G+ L + A A++E S+K Q VF R++L
Sbjct: 121 ER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S SR K +G +VGK+ L I + F PT+ + F+ + VNG +L L DT
Sbjct: 2 SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 62 AGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGT 118
AGQ++Y+ + P +Y D+ +IL +S+ S S+E + L +PI+LVG
Sbjct: 60 AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
K DL ++ IS +G+ L + A A++E S+K Q VF R++L
Sbjct: 118 KKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6 FIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---LGLWD 60
+ + V +G+ VGK+ L + + ++ +D D + ++V+G + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
G+ ++ L + D +++ +S+ +AS+E S+ I + +PIILVG K
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
DL ++ + A + + +IE S+ Q NVK +F+ +R V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6 FIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---LGLWD 60
+ + V +G+ VGK+ L + + ++ +D D + ++V+G + L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
G+ ++ L + D +++ +S+ +AS+E S+ I + +PIILVG K
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
DL ++ + A + + +IE S+ Q NVK +F+ +R V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2 SASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---L 56
S + + + V +G+ VGK+ L + + ++ +D D + ++V+G + L
Sbjct: 2 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIIL 115
+W+ G+ ++ L + D +++ +S+ +AS+E S+ I + +PIIL
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 116 VGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
VG K DL ++ + A + + +IE S+ Q NVK +F+ +R
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 168
Query: 176 VV 177
V
Sbjct: 169 QV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2 SASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---L 56
S + + + V +G+ VGK+ L + + ++ +D D + ++V+G + L
Sbjct: 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIIL 115
+W+ G+ ++ L + D +++ +S+ +AS+E S+ I + +PIIL
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 116 VGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
VG K DL ++ + A + + +IE S+ Q NVK +F+ +R
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 199
Query: 176 VV 177
V
Sbjct: 200 QV 201
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 52/208 (25%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV------------ 48
M K V +G+ +VGK+ +++ T +TF + T+ +F VV
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 49 --------------------------VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82
N + +WDTAGQE Y + PL YRGA I
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142
+ F IS ++ + +K W+ +LK + IILV K+ D +F +D AQ
Sbjct: 122 VVFD-ISNSNTLDRAKTWVNQLK-ISSNYIIILVANKI---DKNKFQVDILEVQKY--AQ 174
Query: 143 GEELRKLIGAPAYIECSSKTQQNVKAVF 170
L +I+ S+KT N+K +F
Sbjct: 175 DNNL-------LFIQTSAKTGTNIKNIF 195
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--FDNFSANVVVNGSTVNLGLWDTAGQE 65
K +GDG VGKT + F +Y TV ++ + G+ + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
L+ + Y GA IL F + S+ + +N++ +W+ E + PI++ K+D+++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176
++ + + +G+ Y E S+KT N F R+
Sbjct: 132 RQKI----SKKLVMEVLKGKNYE-------YFEISAKTAHNFGLPFLHLARI 172
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGS-TVNLGLW 59
S R +K V +GDGA GKT L + TF Y T+ D F + + G+ V L +W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPII-L 115
D GQ ++ GA +L + + + S+EN+ + W + ++ + P++ L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKLDLR 123
VG K+DL
Sbjct: 121 VGNKIDLE 128
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAGQED 66
K + VG+ VGK+ L ++ + + P D + ++V+ V L ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 67 YNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLR 123
LR + D F++ FS+ + S+ V + + L+ P +P+ILVG K DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 143
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
++ + EE R L G + +IE S+ N + +F+ A+R +
Sbjct: 144 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT--AGQE 65
+ V +GD VGKT L + + D + + V+G L + DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRD 124
D + + +G +++ +S+ + S+E+ S+ I + H A VPIILVG K DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
++ ++ A + + +IE S+ Q NV +F+
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF---DNFSANVVVNGSTVNLGLWDTAGQ 64
K + VG+ VGK+ L + T D+ + D + ++V+ V L ++D Q
Sbjct: 4 KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65 EDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLD 121
D L+ + D F++ FS+ + S+ V + + L+ P +P+ILVG K D
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
L ++ + EE R L G + +IE S+ N + +F+ A+R +
Sbjct: 121 LARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 1 MSASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
MS K + +G VGK+ L + + + +D ++VV+G +L +
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVG 117
+D Q+ L D +++ +S+ K S+E S+ + + VPIILVG
Sbjct: 59 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
K DL ++ +D A + + +IE S+ NV+A+F+ +R +
Sbjct: 119 NKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 8 KCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
K + +G+ VGK+ L ++ + + D + ++V+ V L ++D Q D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 67 YNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLR 123
L+ + D F++ FS+ + S+ V + + L+ P +P+ILVG K DL
Sbjct: 74 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
++ + EE R L G + +IE S+ N + +F+ A+R +
Sbjct: 133 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 8 KCVTVGDGAVGKTCLLI-------------SYTSNTFPTDYVPTVFDNFSANVVVNGSTV 54
K VG+ GKT LL S T D+ + D ++V+N
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLN---- 57
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII 114
+WD AG+E++ P +++ + L + + K W+ +K A P+I
Sbjct: 58 ---VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI 114
Query: 115 LVGTKLDLRDDKQ 127
LVGT LD+ D+KQ
Sbjct: 115 LVGTHLDVSDEKQ 127
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42 NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWI 101
+ ++VV+G +L ++D Q+ L D +++ +S+ K S+E S+ +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 102 PELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160
+ VPIILVG K DL ++ +D A + + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 161 KTQQNVKAVFDAAIRVV 177
NV+A+F+ +R +
Sbjct: 151 ALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42 NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWI 101
+ ++VV+G +L ++D Q+ L D +++ +S+ K S+E S+ +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 102 PELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160
+ VPIILVG K DL ++ +D A + + +IE S+
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 161 KTQQNVKAVFDAAIRVV 177
NV+A+F+ +R +
Sbjct: 146 ALHHNVQALFEGVVRQI 162
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 8 KCVTVGDGAVGKTCLLI-------------SYTSNTFPTDYVPTVFDNFSANVVVNGSTV 54
K VG+ GKT LL S T D+ + D ++V+N
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLN---- 59
Query: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII 114
+WD AG+E++ P +++ + L + + K W+ +K A P+I
Sbjct: 60 ---VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI 116
Query: 115 LVGTKLDLRDDKQ 127
LVGT LD+ D+KQ
Sbjct: 117 LVGTHLDVSDEKQ 129
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
+ +G GK+ L + + + F ++Y P + D +S+ V+ V+L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 67 -YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILVGTKLD 121
N R L++ A F++ +S + + S ++ L +A +P +L+G KLD
Sbjct: 82 PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
+ +Q ++ A+G L G + + ++V+ VF A+R
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
VG GKT + S F D +PTV F+ V G+ V + +WD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 72 PLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL---RDDK 126
RG + + + E S+ + L K G+P++++G K DL D+K
Sbjct: 85 ERYCRGVNAIVYMIDAADREKIE-ASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEK 143
Query: 127 QFF 129
Q
Sbjct: 144 QLI 146
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 1 MSASRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYVPTV-FDNFSANVVVNGSTVN-- 55
++A+ K VG+ VGK+ L+ +TS + F DY T + A V + +TV+
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG----V 111
L L DTAG + Y + G IL F + S S+E+ K W LK P +
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133
Query: 112 PIILVGTKLDL 122
+LV K DL
Sbjct: 134 RAVLVANKTDL 144
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
VG GKT + S F D +PTV F+ + G+ V + LWD GQ + +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMW 84
Query: 72 PLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL 122
RG + + E SK + L K G+P++++G K DL
Sbjct: 85 ERYCRGVSAIVYMVDAADQEKIE-ASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
++ VG GKT + S F D +PTV F+ + G+ V + LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL 122
+ + RG + + E SK + L K G+P++++G K DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIE-ASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-------- 58
IK +GDG GKT LL TF P NVV + GL
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKE 97
Query: 59 -----WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI 113
WD GQE + + V++L + ++ W+ ++ Y P+
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD----SRTDSNKHYWLRHIEKYGGKSPV 153
Query: 114 ILVGTKLD 121
I+V K+D
Sbjct: 154 IVVMNKID 161
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 3 ASRFIKCVTVGDGAVGKTCLLISYT-SNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
S+ + + +G GKT ++ SN + +PT+ FS S+++ ++D
Sbjct: 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI--GFSIEKF-KSSSLSFTVFDM 74
Query: 62 AGQEDYNRLRPLSYRGADVFILAFS-------LISKASYENVSKKWIPELKHYAPGVPII 114
+GQ Y L Y+ I +++K + + P++KH +PI+
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH--PDIKHRR--IPIL 130
Query: 115 LVGTKLDLRD 124
K+DLRD
Sbjct: 131 FFANKMDLRD 140
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA 141
+++ L S+ E S I E+K I+L+G LD D+ ID V I TA
Sbjct: 220 VISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTA 279
Query: 142 QGEELRKLIGAP 153
+ + L P
Sbjct: 280 AAKHILDLPQKP 291
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 19 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL------WDTAGQEDYNRLRP 72
K CL IS + +P +FDN +++ NG ++N L W DY+ P
Sbjct: 204 KDCLWISERTG------IPVIFDNLHHSILNNGESLNDALSLVRRTWKDRPMIDYSEQEP 257
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI---ECSSKTQQN 165
L D + F ID P QGEE + IG P + +CS+ T N
Sbjct: 88 LGDTRGFLID---GYPREVKQGEEFGRRIGDPQLVICMDCSADTMTN 131
>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Sulfate Complex
pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
Phosphate Complex
pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
Complex
Length = 397
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
++ V KL +++++ FFI+ ++ + +QG EL +Y+ ++ T +N+K D
Sbjct: 88 VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELN------SYLVDNNDTPKNLKNYIDN 141
Query: 173 AIRVV 177
+ ++
Sbjct: 142 VVGII 146
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
+ +++ LWD AGQE +R L G D F
Sbjct: 144 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 173
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
+ +++ LWD AGQE +R L G D F
Sbjct: 124 AALDIALWDIAGQEAGKSIRDLLGGGVDSF 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,420,955
Number of Sequences: 62578
Number of extensions: 220867
Number of successful extensions: 1142
Number of sequences better than 100.0: 308
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 309
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)