Query 036449
Match_columns 197
No_of_seqs 146 out of 1551
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092 GTPase Rab5/YPT51 and 100.0 3.6E-42 7.8E-47 230.6 18.2 169 4-184 3-173 (200)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-41 3.4E-46 228.4 16.6 167 4-181 7-175 (205)
3 cd01875 RhoG RhoG subfamily. 100.0 2.6E-40 5.5E-45 232.9 20.8 188 5-197 2-191 (191)
4 cd04133 Rop_like Rop subfamily 100.0 6.5E-40 1.4E-44 227.2 21.6 174 7-180 2-175 (176)
5 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.7E-39 3.6E-44 233.0 20.3 176 5-180 12-190 (232)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.5E-40 1.8E-44 219.4 17.0 166 5-182 21-189 (221)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.9E-39 1.1E-43 224.0 20.6 177 3-179 2-181 (182)
8 cd04121 Rab40 Rab40 subfamily. 100.0 5.5E-39 1.2E-43 224.8 19.9 180 4-195 4-187 (189)
9 KOG0080 GTPase Rab18, small G 100.0 2.7E-39 5.9E-44 210.3 15.5 165 5-181 10-177 (209)
10 cd04134 Rho3 Rho3 subfamily. 100.0 2.2E-38 4.8E-43 222.8 21.1 187 7-197 1-189 (189)
11 cd04132 Rho4_like Rho4-like su 100.0 1.4E-38 3E-43 223.7 19.9 185 7-197 1-187 (187)
12 cd04131 Rnd Rnd subfamily. Th 100.0 2.4E-38 5.2E-43 220.2 20.7 172 7-178 2-176 (178)
13 KOG0078 GTP-binding protein SE 100.0 6.1E-39 1.3E-43 218.9 17.0 168 3-182 9-178 (207)
14 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.1E-38 4.5E-43 226.3 19.7 174 7-180 2-178 (222)
15 KOG0098 GTPase Rab2, small G p 100.0 4.6E-39 1E-43 214.2 14.9 169 1-181 1-171 (216)
16 cd04144 Ras2 Ras2 subfamily. 100.0 2.1E-38 4.5E-43 223.2 17.3 178 8-197 1-190 (190)
17 cd04120 Rab12 Rab12 subfamily. 100.0 5E-38 1.1E-42 221.9 19.2 162 7-180 1-165 (202)
18 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.4E-37 2.9E-42 216.2 20.7 172 6-177 1-174 (175)
19 PTZ00369 Ras-like protein; Pro 100.0 8.5E-38 1.8E-42 219.9 19.4 182 4-197 3-189 (189)
20 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.4E-37 3.1E-42 215.5 18.9 164 5-180 1-166 (172)
21 cd01871 Rac1_like Rac1-like su 100.0 5.4E-37 1.2E-41 213.0 20.1 171 6-176 1-173 (174)
22 KOG0394 Ras-related GTPase [Ge 100.0 1.9E-37 4.1E-42 206.1 15.7 170 4-182 7-182 (210)
23 KOG0079 GTP-binding protein H- 100.0 1.5E-37 3.2E-42 199.5 10.5 162 7-180 9-171 (198)
24 smart00174 RHO Rho (Ras homolo 100.0 1.1E-35 2.3E-40 206.7 20.6 171 9-179 1-173 (174)
25 cd04122 Rab14 Rab14 subfamily. 100.0 7.7E-36 1.7E-40 206.0 19.2 162 6-179 2-165 (166)
26 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 9.1E-36 2E-40 211.5 19.7 164 7-181 1-171 (201)
27 cd04136 Rap_like Rap-like subf 100.0 9.6E-36 2.1E-40 204.8 18.9 159 7-177 2-162 (163)
28 cd04109 Rab28 Rab28 subfamily. 100.0 9.6E-36 2.1E-40 213.3 19.3 161 7-179 1-167 (215)
29 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.1E-36 6.6E-41 204.9 15.0 166 4-181 12-179 (222)
30 cd04125 RabA_like RabA-like su 100.0 1.5E-35 3.3E-40 208.4 19.1 178 7-196 1-187 (188)
31 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-35 4E-40 203.7 18.7 161 6-178 1-163 (164)
32 KOG0093 GTPase Rab3, small G p 100.0 3.1E-36 6.6E-41 193.3 13.2 166 6-183 21-188 (193)
33 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.3E-35 1.4E-39 202.7 20.6 169 7-175 1-171 (173)
34 cd04110 Rab35 Rab35 subfamily. 100.0 3.5E-35 7.7E-40 208.1 19.7 165 4-180 4-169 (199)
35 cd04117 Rab15 Rab15 subfamily. 100.0 4.4E-35 9.5E-40 201.2 19.0 158 7-176 1-160 (161)
36 cd01867 Rab8_Rab10_Rab13_like 100.0 5.1E-35 1.1E-39 202.1 19.2 163 5-179 2-166 (167)
37 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-34 2.7E-39 201.4 21.2 171 7-177 1-173 (174)
38 cd04127 Rab27A Rab27a subfamil 100.0 4.3E-35 9.3E-40 204.8 18.6 164 4-179 2-178 (180)
39 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.4E-35 1.8E-39 203.1 19.8 168 7-182 1-170 (182)
40 KOG0086 GTPase Rab4, small G p 100.0 4.4E-36 9.5E-41 193.9 12.1 167 5-183 8-176 (214)
41 PF00071 Ras: Ras family; Int 100.0 3.4E-35 7.5E-40 201.9 17.5 159 8-178 1-161 (162)
42 cd04126 Rab20 Rab20 subfamily. 100.0 3.7E-35 8E-40 209.5 18.2 170 7-180 1-192 (220)
43 PLN03071 GTP-binding nuclear p 100.0 8.3E-35 1.8E-39 208.7 20.1 163 4-180 11-174 (219)
44 cd04176 Rap2 Rap2 subgroup. T 100.0 6.4E-35 1.4E-39 200.8 18.7 159 7-177 2-162 (163)
45 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-34 2.3E-39 200.1 19.5 161 7-179 2-164 (165)
46 cd04140 ARHI_like ARHI subfami 100.0 8.7E-35 1.9E-39 200.5 18.8 158 7-176 2-163 (165)
47 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.2E-34 2.7E-39 199.5 19.0 161 5-177 1-163 (164)
48 KOG0393 Ras-related small GTPa 100.0 1.2E-35 2.6E-40 203.6 13.7 179 4-182 2-183 (198)
49 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-34 3.3E-39 203.5 19.7 168 6-176 2-194 (195)
50 cd04112 Rab26 Rab26 subfamily. 100.0 1.1E-34 2.4E-39 204.4 18.9 163 7-181 1-166 (191)
51 smart00173 RAS Ras subfamily o 100.0 1.1E-34 2.3E-39 199.8 18.4 160 7-178 1-162 (164)
52 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.7E-34 3.7E-39 198.2 18.9 158 7-177 2-161 (162)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2E-34 4.4E-39 198.9 19.2 161 6-178 2-164 (166)
54 cd04124 RabL2 RabL2 subfamily. 100.0 2.7E-34 5.8E-39 197.3 19.7 159 7-180 1-160 (161)
55 cd04129 Rho2 Rho2 subfamily. 100.0 6.3E-34 1.4E-38 199.9 21.7 178 7-184 2-179 (187)
56 cd00877 Ran Ran (Ras-related n 100.0 4.7E-34 1E-38 196.9 19.9 160 7-180 1-161 (166)
57 cd04106 Rab23_lke Rab23-like s 100.0 2.4E-34 5.1E-39 197.7 18.3 158 7-176 1-161 (162)
58 cd04118 Rab24 Rab24 subfamily. 100.0 6E-34 1.3E-38 201.1 20.8 166 7-180 1-168 (193)
59 cd01864 Rab19 Rab19 subfamily. 100.0 3.7E-34 8E-39 197.4 19.0 162 5-177 2-165 (165)
60 cd04142 RRP22 RRP22 subfamily. 100.0 7.1E-34 1.5E-38 200.7 20.6 179 7-197 1-198 (198)
61 cd04119 RJL RJL (RabJ-Like) su 100.0 5E-34 1.1E-38 197.0 18.9 160 7-178 1-167 (168)
62 cd01870 RhoA_like RhoA-like su 100.0 1.6E-33 3.6E-38 195.9 20.9 171 7-177 2-174 (175)
63 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.8E-34 1.9E-38 196.2 18.9 162 8-179 2-166 (170)
64 cd04103 Centaurin_gamma Centau 100.0 1.1E-33 2.3E-38 193.3 18.9 155 7-176 1-157 (158)
65 KOG0088 GTPase Rab21, small G 100.0 2.8E-35 6E-40 191.2 10.4 165 5-181 12-178 (218)
66 cd04113 Rab4 Rab4 subfamily. 100.0 1.1E-33 2.3E-38 194.3 18.4 159 7-177 1-161 (161)
67 cd04116 Rab9 Rab9 subfamily. 100.0 1.7E-33 3.7E-38 195.0 19.4 163 3-177 2-170 (170)
68 cd04111 Rab39 Rab39 subfamily. 100.0 8.7E-34 1.9E-38 202.4 18.3 164 6-181 2-169 (211)
69 cd01866 Rab2 Rab2 subfamily. 100.0 1.8E-33 3.9E-38 194.5 19.3 163 5-179 3-167 (168)
70 PLN03110 Rab GTPase; Provision 100.0 1E-33 2.2E-38 202.8 18.6 163 5-179 11-175 (216)
71 cd01868 Rab11_like Rab11-like. 100.0 2E-33 4.4E-38 193.7 19.1 161 5-177 2-164 (165)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.2E-33 4.8E-38 194.4 19.3 161 5-177 1-168 (170)
73 PLN03108 Rab family protein; P 100.0 1.6E-33 3.5E-38 201.0 19.1 168 1-180 1-170 (210)
74 cd04177 RSR1 RSR1 subgroup. R 100.0 2.7E-33 5.9E-38 193.6 19.4 162 6-178 1-164 (168)
75 smart00176 RAN Ran (Ras-relate 100.0 2.2E-33 4.7E-38 198.0 18.3 155 12-180 1-156 (200)
76 cd04143 Rhes_like Rhes_like su 100.0 3E-33 6.6E-38 203.2 19.0 163 7-180 1-173 (247)
77 KOG0095 GTPase Rab30, small G 100.0 3.1E-34 6.6E-39 184.8 12.2 164 5-180 6-171 (213)
78 cd04146 RERG_RasL11_like RERG/ 100.0 1.9E-33 4.1E-38 193.8 17.0 159 8-178 1-164 (165)
79 cd01892 Miro2 Miro2 subfamily. 100.0 4.6E-33 1E-37 192.5 18.7 164 4-179 2-167 (169)
80 cd04101 RabL4 RabL4 (Rab-like4 100.0 8.9E-33 1.9E-37 190.3 18.5 159 7-177 1-163 (164)
81 smart00175 RAB Rab subfamily o 100.0 1.2E-32 2.7E-37 189.5 18.8 161 7-179 1-163 (164)
82 cd00157 Rho Rho (Ras homology) 100.0 2.3E-32 4.9E-37 189.4 20.0 169 7-175 1-170 (171)
83 cd01861 Rab6 Rab6 subfamily. 100.0 1.7E-32 3.7E-37 188.3 18.6 159 7-177 1-161 (161)
84 cd04137 RheB Rheb (Ras Homolog 100.0 1.2E-32 2.6E-37 192.4 17.6 177 7-197 2-180 (180)
85 cd01860 Rab5_related Rab5-rela 100.0 2.7E-32 5.9E-37 187.6 18.8 160 6-177 1-162 (163)
86 KOG0395 Ras-related GTPase [Ge 100.0 9.3E-33 2E-37 193.4 16.5 163 5-179 2-166 (196)
87 KOG0091 GTPase Rab39, small G 100.0 2.2E-33 4.8E-38 183.3 11.8 164 5-180 7-175 (213)
88 cd01862 Rab7 Rab7 subfamily. 100.0 4.8E-32 1E-36 187.9 19.0 164 7-181 1-170 (172)
89 cd04148 RGK RGK subfamily. Th 100.0 4.2E-32 9.1E-37 194.9 19.2 160 7-180 1-165 (221)
90 PLN03118 Rab family protein; P 100.0 5.8E-32 1.3E-36 193.3 19.7 165 5-181 13-180 (211)
91 cd04123 Rab21 Rab21 subfamily. 100.0 7.3E-32 1.6E-36 185.2 19.2 159 7-177 1-161 (162)
92 cd04139 RalA_RalB RalA/RalB su 100.0 7E-32 1.5E-36 185.7 18.8 160 7-178 1-162 (164)
93 cd01863 Rab18 Rab18 subfamily. 100.0 1.7E-31 3.6E-36 183.4 19.4 157 7-176 1-160 (161)
94 cd04114 Rab30 Rab30 subfamily. 100.0 3.8E-31 8.1E-36 183.0 20.0 165 1-177 1-168 (169)
95 cd01893 Miro1 Miro1 subfamily. 100.0 3.6E-31 7.8E-36 182.6 18.5 164 7-179 1-165 (166)
96 PLN00223 ADP-ribosylation fact 100.0 9.2E-32 2E-36 187.7 14.6 158 4-180 15-180 (181)
97 KOG0081 GTPase Rab27, small G 100.0 1E-33 2.2E-38 184.1 4.4 163 6-180 9-183 (219)
98 cd04149 Arf6 Arf6 subfamily. 100.0 9.5E-32 2.1E-36 185.7 14.4 155 4-175 7-167 (168)
99 cd00876 Ras Ras family. The R 100.0 3.7E-31 8E-36 181.3 17.0 158 8-177 1-160 (160)
100 KOG0097 GTPase Rab14, small G 100.0 7.8E-32 1.7E-36 172.3 12.3 165 4-180 9-175 (215)
101 cd04147 Ras_dva Ras-dva subfam 100.0 7.7E-31 1.7E-35 185.8 18.7 162 8-180 1-165 (198)
102 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.6E-33 7.9E-38 176.6 4.6 160 10-181 1-163 (192)
103 cd00154 Rab Rab family. Rab G 100.0 1.2E-30 2.5E-35 178.3 17.5 157 7-175 1-159 (159)
104 cd04158 ARD1 ARD1 subfamily. 100.0 7.8E-31 1.7E-35 181.4 16.6 157 8-181 1-164 (169)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5.5E-31 1.2E-35 184.3 15.8 170 5-188 2-180 (183)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.6E-32 2.1E-36 185.0 11.5 153 8-175 1-163 (164)
107 smart00177 ARF ARF-like small 100.0 1.2E-30 2.7E-35 181.3 16.7 158 4-178 11-174 (175)
108 PTZ00133 ADP-ribosylation fact 100.0 2.2E-31 4.8E-36 186.0 12.7 160 4-180 15-180 (182)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-30 2.5E-35 178.8 14.9 153 7-175 1-158 (159)
110 PTZ00132 GTP-binding nuclear p 100.0 9.6E-30 2.1E-34 182.4 20.0 168 1-182 4-172 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 1.2E-29 2.5E-34 176.2 15.9 154 4-175 12-172 (173)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.6E-29 2.1E-33 174.3 17.5 150 7-164 1-176 (202)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.4E-29 1.2E-33 173.0 15.3 155 4-175 13-173 (174)
114 cd04157 Arl6 Arl6 subfamily. 100.0 5.2E-29 1.1E-33 171.1 13.0 151 8-175 1-161 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 4.2E-29 9.2E-34 172.4 12.2 157 8-175 1-166 (167)
116 cd04151 Arl1 Arl1 subfamily. 100.0 2.2E-29 4.7E-34 172.4 10.4 151 8-175 1-157 (158)
117 cd00879 Sar1 Sar1 subfamily. 100.0 2.4E-28 5.3E-33 172.0 15.5 157 4-177 17-190 (190)
118 PF00025 Arf: ADP-ribosylation 100.0 8E-28 1.7E-32 167.0 16.9 159 3-177 11-175 (175)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4E-28 8.6E-33 166.4 14.7 152 8-175 1-159 (160)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.1E-28 1.3E-32 166.6 14.7 151 8-175 1-166 (167)
121 PLN00023 GTP-binding protein; 100.0 1.5E-27 3.2E-32 176.1 16.7 148 3-155 18-192 (334)
122 smart00178 SAR Sar1p-like memb 100.0 1.4E-27 3.1E-32 167.1 15.5 157 4-176 15-183 (184)
123 PTZ00099 rab6; Provisional 100.0 2.8E-27 6.1E-32 164.0 16.5 143 29-183 3-147 (176)
124 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.3E-27 2.7E-32 163.6 13.5 150 8-175 1-157 (158)
125 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-26 4.5E-31 159.1 16.4 156 7-178 1-168 (168)
126 cd04159 Arl10_like Arl10-like 99.9 3.8E-27 8.2E-32 161.0 11.7 151 9-175 2-158 (159)
127 cd01890 LepA LepA subfamily. 99.9 1.7E-26 3.7E-31 161.1 15.1 154 8-177 2-176 (179)
128 KOG0070 GTP-binding ADP-ribosy 99.9 2.1E-26 4.7E-31 154.4 12.9 166 2-180 13-180 (181)
129 cd04155 Arl3 Arl3 subfamily. 99.9 5.2E-26 1.1E-30 157.9 15.4 153 4-175 12-172 (173)
130 KOG4252 GTP-binding protein [S 99.9 1.7E-28 3.6E-33 162.9 2.1 168 4-183 18-186 (246)
131 KOG0073 GTP-binding ADP-ribosy 99.9 1.3E-25 2.8E-30 147.0 15.4 164 4-179 14-179 (185)
132 COG1100 GTPase SAR1 and relate 99.9 3E-25 6.4E-30 159.7 17.0 180 5-184 4-191 (219)
133 TIGR00231 small_GTP small GTP- 99.9 3.4E-25 7.4E-30 151.0 16.4 157 6-174 1-160 (161)
134 cd01898 Obg Obg subfamily. Th 99.9 2.1E-25 4.5E-30 154.4 15.0 156 8-177 2-170 (170)
135 TIGR02528 EutP ethanolamine ut 99.9 5.8E-26 1.3E-30 152.7 11.1 135 8-174 2-141 (142)
136 cd04171 SelB SelB subfamily. 99.9 8.2E-25 1.8E-29 150.4 14.5 153 7-175 1-163 (164)
137 cd01878 HflX HflX subfamily. 99.9 8.2E-25 1.8E-29 155.7 14.8 155 4-177 39-204 (204)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-24 2.9E-29 163.8 16.7 161 7-180 159-330 (335)
139 PRK15494 era GTPase Era; Provi 99.9 2.3E-24 5E-29 163.5 17.0 162 1-181 47-219 (339)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3E-24 6.6E-29 148.2 15.2 158 8-178 2-166 (168)
141 TIGR00436 era GTP-binding prot 99.9 3.9E-24 8.5E-29 158.1 16.1 156 8-181 2-167 (270)
142 cd00882 Ras_like_GTPase Ras-li 99.9 8.5E-24 1.8E-28 143.0 15.3 152 11-174 1-156 (157)
143 KOG3883 Ras family small GTPas 99.9 1.9E-23 4.1E-28 135.4 15.6 167 5-183 8-180 (198)
144 cd01894 EngA1 EngA1 subfamily. 99.9 6.5E-24 1.4E-28 144.9 14.3 147 10-177 1-157 (157)
145 PF08477 Miro: Miro-like prote 99.9 2.4E-24 5.2E-29 140.6 11.3 114 8-121 1-119 (119)
146 cd01879 FeoB Ferrous iron tran 99.9 1.5E-23 3.3E-28 143.2 15.6 148 11-178 1-157 (158)
147 PRK04213 GTP-binding protein; 99.9 2.9E-24 6.2E-29 152.6 11.5 156 4-180 7-194 (201)
148 KOG0075 GTP-binding ADP-ribosy 99.9 1.8E-24 3.9E-29 139.2 8.3 155 6-178 20-182 (186)
149 PRK03003 GTP-binding protein D 99.9 1E-23 2.2E-28 166.8 14.1 161 5-179 210-383 (472)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3E-23 6.4E-28 161.9 16.2 151 5-180 202-362 (442)
151 KOG0071 GTP-binding ADP-ribosy 99.9 9.7E-24 2.1E-28 134.8 10.5 159 4-179 15-179 (180)
152 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-23 8.2E-28 146.0 14.6 148 7-168 3-172 (194)
153 TIGR03156 GTP_HflX GTP-binding 99.9 3.7E-23 8E-28 157.2 15.2 152 5-176 188-350 (351)
154 PRK03003 GTP-binding protein D 99.9 3.3E-23 7.1E-28 163.9 15.2 154 5-179 37-200 (472)
155 TIGR02729 Obg_CgtA Obg family 99.9 5.6E-23 1.2E-27 154.9 15.7 157 7-177 158-328 (329)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.1E-22 2.4E-27 138.6 15.6 145 7-177 2-156 (157)
157 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-23 2.3E-28 141.4 10.1 147 7-173 1-156 (156)
158 cd01881 Obg_like The Obg-like 99.9 4.7E-23 1E-27 143.2 13.6 152 11-176 1-175 (176)
159 PRK05291 trmE tRNA modificatio 99.9 5.6E-23 1.2E-27 161.1 14.7 148 5-179 214-371 (449)
160 TIGR00487 IF-2 translation ini 99.9 1.4E-22 3.1E-27 162.5 17.1 155 4-176 85-248 (587)
161 TIGR03594 GTPase_EngA ribosome 99.9 2.5E-22 5.3E-27 157.9 17.9 160 4-179 170-345 (429)
162 cd04163 Era Era subfamily. Er 99.9 1.3E-22 2.7E-27 139.6 14.2 155 6-176 3-167 (168)
163 cd00881 GTP_translation_factor 99.9 9E-23 2E-27 143.3 13.5 157 8-178 1-187 (189)
164 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-21 2.3E-26 135.9 17.6 155 6-176 2-173 (174)
165 TIGR01393 lepA GTP-binding pro 99.9 2.3E-22 4.9E-27 162.0 16.1 159 6-180 3-182 (595)
166 KOG0076 GTP-binding ADP-ribosy 99.9 1.2E-23 2.7E-28 139.1 6.6 168 1-180 12-189 (197)
167 cd01889 SelB_euk SelB subfamil 99.9 1.6E-22 3.5E-27 142.6 12.7 162 7-180 1-188 (192)
168 PRK15467 ethanolamine utilizat 99.9 1.8E-22 3.8E-27 137.9 12.2 142 8-180 3-149 (158)
169 KOG1673 Ras GTPases [General f 99.9 1.9E-22 4.1E-27 131.1 11.4 169 6-181 20-189 (205)
170 PRK00089 era GTPase Era; Revie 99.9 3E-22 6.6E-27 149.9 14.3 161 5-181 4-174 (292)
171 cd04105 SR_beta Signal recogni 99.9 1.1E-22 2.5E-27 144.2 11.2 118 8-125 2-124 (203)
172 PRK00454 engB GTP-binding prot 99.9 6.7E-22 1.4E-26 139.9 15.0 162 3-179 21-195 (196)
173 CHL00189 infB translation init 99.9 4.1E-22 8.8E-27 162.2 15.4 161 4-177 242-409 (742)
174 PRK00093 GTP-binding protein D 99.9 5.5E-22 1.2E-26 156.1 15.4 150 7-177 2-161 (435)
175 TIGR03594 GTPase_EngA ribosome 99.9 6.6E-22 1.4E-26 155.5 15.1 152 8-180 1-162 (429)
176 PRK12297 obgE GTPase CgtA; Rev 99.9 2.1E-21 4.5E-26 150.0 17.3 157 8-181 160-330 (424)
177 TIGR03598 GTPase_YsxC ribosome 99.9 3.5E-22 7.5E-27 139.4 11.6 152 1-167 13-179 (179)
178 cd01888 eIF2_gamma eIF2-gamma 99.9 6.1E-22 1.3E-26 140.6 12.8 163 7-180 1-201 (203)
179 PF00009 GTP_EFTU: Elongation 99.9 1.5E-21 3.2E-26 137.2 14.4 161 4-177 1-186 (188)
180 PRK05306 infB translation init 99.9 2.1E-21 4.6E-26 159.3 17.3 159 4-176 288-450 (787)
181 PRK11058 GTPase HflX; Provisio 99.9 2.8E-21 6E-26 150.1 16.2 156 7-179 198-363 (426)
182 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 7E-22 1.5E-26 132.7 9.7 163 6-182 10-173 (216)
183 PRK05433 GTP-binding protein L 99.9 4.8E-21 1.1E-25 154.5 15.9 163 2-180 3-186 (600)
184 COG1159 Era GTPase [General fu 99.9 7E-21 1.5E-25 137.4 14.7 164 2-181 2-175 (298)
185 PRK12296 obgE GTPase CgtA; Rev 99.9 5E-21 1.1E-25 149.8 15.0 160 7-181 160-343 (500)
186 TIGR00475 selB selenocysteine- 99.9 5.2E-21 1.1E-25 154.1 15.5 161 7-181 1-169 (581)
187 TIGR00491 aIF-2 translation in 99.9 5.2E-21 1.1E-25 153.4 15.0 170 5-178 3-216 (590)
188 PRK09518 bifunctional cytidyla 99.9 3.7E-21 8.1E-26 158.7 14.5 158 4-179 448-622 (712)
189 PRK00093 GTP-binding protein D 99.9 7.1E-21 1.5E-25 149.8 15.0 160 5-178 172-344 (435)
190 PRK09518 bifunctional cytidyla 99.9 1.5E-20 3.3E-25 155.1 16.4 154 5-179 274-437 (712)
191 PRK12317 elongation factor 1-a 99.9 4.3E-21 9.3E-26 150.4 12.4 161 1-170 1-197 (425)
192 COG2229 Predicted GTPase [Gene 99.9 4.4E-20 9.5E-25 123.9 15.1 156 3-176 7-176 (187)
193 PRK12298 obgE GTPase CgtA; Rev 99.9 2.2E-20 4.7E-25 143.6 15.5 160 8-180 161-335 (390)
194 cd01896 DRG The developmentall 99.9 4.7E-20 1E-24 133.3 16.4 150 8-178 2-226 (233)
195 cd00880 Era_like Era (E. coli 99.9 1.6E-20 3.6E-25 128.0 13.2 151 11-176 1-162 (163)
196 TIGR00437 feoB ferrous iron tr 99.9 1.8E-20 3.9E-25 151.1 15.3 145 13-177 1-154 (591)
197 KOG0072 GTP-binding ADP-ribosy 99.9 1.2E-21 2.5E-26 125.9 5.6 165 4-180 16-181 (182)
198 PRK09554 feoB ferrous iron tra 99.8 2.2E-19 4.8E-24 148.1 18.6 153 5-177 2-167 (772)
199 TIGR00483 EF-1_alpha translati 99.8 2.7E-20 5.9E-25 145.9 12.5 158 3-169 4-198 (426)
200 PF10662 PduV-EutP: Ethanolami 99.8 2.7E-20 5.8E-25 122.3 10.4 136 8-174 3-142 (143)
201 COG1160 Predicted GTPases [Gen 99.8 7.7E-20 1.7E-24 139.0 13.4 151 7-178 4-165 (444)
202 KOG0074 GTP-binding ADP-ribosy 99.8 5.1E-20 1.1E-24 118.1 10.1 160 4-177 15-178 (185)
203 KOG4423 GTP-binding protein-li 99.8 2.1E-22 4.5E-27 134.8 -1.5 165 7-181 26-197 (229)
204 PRK04004 translation initiatio 99.8 3.4E-19 7.4E-24 143.4 15.3 167 4-177 4-217 (586)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.2E-19 9.1E-24 124.9 13.4 150 6-166 2-171 (195)
206 cd01876 YihA_EngB The YihA (En 99.8 3.6E-19 7.7E-24 122.6 12.5 155 8-177 1-170 (170)
207 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.5E-19 3.3E-24 128.8 10.3 151 8-169 1-185 (208)
208 TIGR01394 TypA_BipA GTP-bindin 99.8 3.9E-19 8.4E-24 143.2 13.8 159 8-180 3-193 (594)
209 TIGR03680 eif2g_arch translati 99.8 2.2E-19 4.7E-24 139.7 11.8 164 4-178 2-196 (406)
210 COG1160 Predicted GTPases [Gen 99.8 7.5E-19 1.6E-23 133.6 14.3 163 5-179 177-352 (444)
211 PRK10512 selenocysteinyl-tRNA- 99.8 8.5E-19 1.8E-23 141.8 15.5 160 7-180 1-168 (614)
212 PRK10218 GTP-binding protein; 99.8 1.2E-18 2.6E-23 140.3 16.1 162 5-180 4-197 (607)
213 KOG1707 Predicted Ras related/ 99.8 7.4E-20 1.6E-24 141.8 8.2 167 4-180 7-177 (625)
214 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.8E-18 6.1E-23 123.1 15.5 156 8-175 1-220 (224)
215 cd04167 Snu114p Snu114p subfam 99.8 4.1E-19 9E-24 127.1 11.0 112 8-123 2-136 (213)
216 PRK04000 translation initiatio 99.8 7.4E-19 1.6E-23 136.7 13.1 166 3-179 6-202 (411)
217 COG0486 ThdF Predicted GTPase 99.8 9E-19 1.9E-23 133.6 12.9 152 6-180 217-378 (454)
218 KOG1423 Ras-like GTPase ERA [C 99.8 6.1E-19 1.3E-23 127.3 11.2 176 3-181 69-274 (379)
219 cd04168 TetM_like Tet(M)-like 99.8 2.3E-18 5E-23 124.7 12.9 113 8-124 1-130 (237)
220 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 4.7E-19 1E-23 126.6 8.6 166 8-181 1-179 (232)
221 PRK12736 elongation factor Tu; 99.8 3.3E-18 7.2E-23 132.6 13.3 163 3-178 9-201 (394)
222 COG0218 Predicted GTPase [Gene 99.8 7.9E-18 1.7E-22 115.5 13.1 160 2-179 20-198 (200)
223 PRK12735 elongation factor Tu; 99.8 6.2E-18 1.3E-22 131.2 13.7 164 4-178 10-203 (396)
224 COG0532 InfB Translation initi 99.8 2.1E-17 4.5E-22 127.8 15.6 164 4-179 3-171 (509)
225 cd01883 EF1_alpha Eukaryotic e 99.8 2.7E-18 5.9E-23 123.3 9.9 151 8-167 1-194 (219)
226 COG0370 FeoB Fe2+ transport sy 99.8 1.3E-17 2.8E-22 132.3 14.1 157 5-181 2-167 (653)
227 TIGR00485 EF-Tu translation el 99.8 7.9E-18 1.7E-22 130.7 12.7 149 3-164 9-179 (394)
228 CHL00071 tufA elongation facto 99.8 1.9E-17 4.1E-22 129.0 13.0 150 3-165 9-180 (409)
229 cd04104 p47_IIGP_like p47 (47- 99.8 2.3E-17 5E-22 116.6 12.4 168 6-180 1-186 (197)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 6.1E-17 1.3E-21 119.2 13.3 114 8-125 4-138 (267)
231 KOG1489 Predicted GTP-binding 99.7 1.6E-16 3.5E-21 115.4 12.8 154 7-176 197-365 (366)
232 PRK00049 elongation factor Tu; 99.7 2.3E-16 5E-21 122.4 14.5 162 4-178 10-203 (396)
233 cd01886 EF-G Elongation factor 99.7 9.3E-17 2E-21 118.3 11.4 111 8-124 1-130 (270)
234 cd01885 EF2 EF2 (for archaea a 99.7 1.8E-16 4E-21 113.3 12.6 112 8-123 2-138 (222)
235 PRK05124 cysN sulfate adenylyl 99.7 1.2E-16 2.5E-21 126.3 12.0 158 3-169 24-216 (474)
236 PLN00043 elongation factor 1-a 99.7 2.1E-16 4.6E-21 123.9 13.3 159 3-168 4-203 (447)
237 PLN03126 Elongation factor Tu; 99.7 1.9E-16 4.1E-21 124.8 12.9 150 4-164 79-248 (478)
238 TIGR02034 CysN sulfate adenyly 99.7 9.3E-17 2E-21 125.0 10.8 153 7-168 1-187 (406)
239 COG1084 Predicted GTPase [Gene 99.7 4.9E-16 1.1E-20 113.7 13.6 160 5-180 167-338 (346)
240 PLN03127 Elongation factor Tu; 99.7 5.2E-16 1.1E-20 121.7 14.7 162 4-178 59-252 (447)
241 PF09439 SRPRB: Signal recogni 99.7 7.9E-18 1.7E-22 115.5 3.8 118 5-125 2-127 (181)
242 cd01850 CDC_Septin CDC/Septin. 99.7 1E-15 2.2E-20 113.2 15.0 144 5-162 3-186 (276)
243 COG3596 Predicted GTPase [Gene 99.7 8.6E-17 1.9E-21 115.0 8.8 172 3-180 36-224 (296)
244 PRK13351 elongation factor G; 99.7 2.2E-16 4.7E-21 130.5 12.6 116 3-125 5-140 (687)
245 PTZ00141 elongation factor 1- 99.7 2.3E-16 5.1E-21 123.7 11.7 157 3-168 4-203 (446)
246 PRK00741 prfC peptide chain re 99.7 1.1E-15 2.5E-20 121.8 15.3 117 4-124 8-145 (526)
247 cd04170 EF-G_bact Elongation f 99.7 1E-15 2.2E-20 113.3 13.6 149 8-175 1-170 (268)
248 KOG1145 Mitochondrial translat 99.7 3.7E-16 8.1E-21 120.8 11.1 161 4-178 151-316 (683)
249 KOG0462 Elongation factor-type 99.7 1.2E-15 2.7E-20 117.9 13.6 165 4-182 58-239 (650)
250 COG2262 HflX GTPases [General 99.7 2E-15 4.4E-20 113.6 14.2 158 4-180 190-358 (411)
251 COG1163 DRG Predicted GTPase [ 99.7 5.8E-15 1.3E-19 107.8 15.8 156 4-179 61-290 (365)
252 PRK05506 bifunctional sulfate 99.7 4.6E-16 1E-20 127.4 11.0 156 4-168 22-211 (632)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 7.4E-15 1.6E-19 103.9 15.6 164 7-180 1-186 (196)
254 PF01926 MMR_HSR1: 50S ribosom 99.7 1.5E-15 3.2E-20 98.5 10.6 105 8-119 1-116 (116)
255 PTZ00327 eukaryotic translatio 99.7 1.7E-15 3.7E-20 118.7 12.5 166 3-179 31-234 (460)
256 cd01899 Ygr210 Ygr210 subfamil 99.6 9.5E-15 2.1E-19 109.7 15.0 80 9-88 1-110 (318)
257 TIGR00484 EF-G translation elo 99.6 6.2E-15 1.3E-19 121.8 14.6 115 4-124 8-141 (689)
258 COG5256 TEF1 Translation elong 99.6 2E-15 4.3E-20 113.6 10.3 160 2-168 3-201 (428)
259 KOG0077 Vesicle coat complex C 99.6 9.8E-16 2.1E-20 101.1 6.9 156 5-176 19-191 (193)
260 TIGR00503 prfC peptide chain r 99.6 7.4E-15 1.6E-19 117.2 12.0 117 4-124 9-146 (527)
261 COG4917 EutP Ethanolamine util 99.6 1.4E-15 3E-20 95.9 6.1 137 8-175 3-143 (148)
262 COG0536 Obg Predicted GTPase [ 99.6 1.5E-14 3.3E-19 106.4 12.5 161 9-181 162-336 (369)
263 PRK12739 elongation factor G; 99.6 2.7E-14 5.8E-19 118.1 15.4 115 4-124 6-139 (691)
264 PRK09866 hypothetical protein; 99.6 2.9E-14 6.4E-19 113.4 14.7 110 55-176 231-351 (741)
265 PRK14845 translation initiatio 99.6 2.5E-14 5.4E-19 120.7 14.0 158 17-178 472-673 (1049)
266 KOG0090 Signal recognition par 99.6 4.9E-15 1.1E-19 102.0 7.7 166 6-176 38-237 (238)
267 cd00066 G-alpha G protein alph 99.6 4.3E-14 9.2E-19 106.7 13.3 127 53-180 160-313 (317)
268 KOG1191 Mitochondrial GTPase [ 99.6 2.2E-14 4.7E-19 109.9 10.5 168 5-182 267-454 (531)
269 KOG1144 Translation initiation 99.6 1.2E-14 2.7E-19 115.8 8.8 188 5-197 474-705 (1064)
270 COG0481 LepA Membrane GTPase L 99.6 2E-13 4.4E-18 104.4 14.1 163 4-182 7-190 (603)
271 KOG1707 Predicted Ras related/ 99.5 4.1E-13 9E-18 104.8 15.4 165 2-181 421-586 (625)
272 PRK12740 elongation factor G; 99.5 2.2E-13 4.8E-18 112.6 14.7 107 12-124 1-126 (668)
273 KOG3905 Dynein light intermedi 99.5 1.8E-13 3.8E-18 100.2 12.3 174 7-181 53-293 (473)
274 PRK00007 elongation factor G; 99.5 1.7E-13 3.7E-18 113.3 13.4 116 4-125 8-142 (693)
275 KOG0461 Selenocysteine-specifi 99.5 2.9E-13 6.2E-18 99.9 12.8 170 1-181 1-196 (522)
276 KOG1490 GTP-binding protein CR 99.5 1.6E-14 3.4E-19 110.9 6.3 168 4-185 166-348 (620)
277 COG2895 CysN GTPases - Sulfate 99.5 1.7E-13 3.6E-18 101.3 10.8 158 1-167 1-192 (431)
278 smart00010 small_GTPase Small 99.5 3.3E-14 7.1E-19 93.1 6.0 113 7-167 1-115 (124)
279 PRK09602 translation-associate 99.5 1.3E-12 2.8E-17 101.1 15.5 82 7-88 2-113 (396)
280 KOG1532 GTPase XAB1, interacts 99.5 2.2E-13 4.8E-18 97.5 9.8 127 53-181 115-267 (366)
281 smart00275 G_alpha G protein a 99.5 9.4E-13 2E-17 100.2 13.9 125 54-180 184-336 (342)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.3E-13 1.4E-17 98.3 12.3 119 4-125 36-168 (313)
283 cd01853 Toc34_like Toc34-like 99.5 8.5E-13 1.8E-17 96.1 12.7 119 4-126 29-165 (249)
284 PF04548 AIG1: AIG1 family; I 99.5 1.1E-12 2.3E-17 93.9 13.0 166 7-181 1-189 (212)
285 TIGR00157 ribosome small subun 99.5 3E-13 6.5E-18 98.5 10.3 96 65-175 24-120 (245)
286 TIGR00490 aEF-2 translation el 99.5 1.3E-13 2.8E-18 114.4 9.1 117 4-124 17-152 (720)
287 PRK13768 GTPase; Provisional 99.5 4E-13 8.6E-18 98.4 10.7 124 55-179 98-248 (253)
288 PF05783 DLIC: Dynein light in 99.5 2E-12 4.4E-17 101.4 13.8 172 7-182 26-268 (472)
289 PF03029 ATP_bind_1: Conserved 99.4 1.5E-13 3.3E-18 99.4 5.2 123 55-177 92-236 (238)
290 TIGR00101 ureG urease accessor 99.4 4.4E-12 9.4E-17 89.6 12.4 101 55-178 93-196 (199)
291 KOG3886 GTP-binding protein [S 99.4 2.9E-13 6.2E-18 94.5 5.7 165 6-182 4-182 (295)
292 cd01882 BMS1 Bms1. Bms1 is an 99.4 5.7E-12 1.2E-16 90.8 12.3 143 4-164 37-182 (225)
293 PF05049 IIGP: Interferon-indu 99.4 1.7E-12 3.7E-17 98.5 9.3 165 5-180 34-220 (376)
294 TIGR02836 spore_IV_A stage IV 99.4 3.8E-11 8.2E-16 91.5 14.9 160 5-180 16-236 (492)
295 PRK09435 membrane ATPase/prote 99.4 9E-12 1.9E-16 93.9 11.5 109 53-180 148-262 (332)
296 PLN00116 translation elongatio 99.4 1.6E-12 3.5E-17 109.5 8.3 116 4-123 17-163 (843)
297 PTZ00416 elongation factor 2; 99.4 3.6E-12 7.7E-17 107.3 10.2 116 4-123 17-157 (836)
298 TIGR00073 hypB hydrogenase acc 99.4 2.4E-11 5.2E-16 86.6 12.5 153 3-176 19-205 (207)
299 KOG0082 G-protein alpha subuni 99.3 3.5E-11 7.6E-16 90.3 12.0 127 54-182 195-348 (354)
300 PF00735 Septin: Septin; Inte 99.3 1E-10 2.3E-15 86.7 14.3 115 6-125 4-157 (281)
301 KOG0705 GTPase-activating prot 99.3 4.5E-12 9.8E-17 98.5 7.0 161 5-180 29-191 (749)
302 PTZ00258 GTP-binding protein; 99.3 4.1E-11 8.8E-16 92.0 12.0 84 5-88 20-126 (390)
303 KOG0458 Elongation factor 1 al 99.3 1.1E-10 2.4E-15 91.6 13.3 159 4-169 175-373 (603)
304 PF00350 Dynamin_N: Dynamin fa 99.3 5.3E-11 1.1E-15 82.1 10.2 62 56-120 103-168 (168)
305 KOG3887 Predicted small GTPase 99.3 9.3E-12 2E-16 87.8 6.0 169 7-182 28-206 (347)
306 COG1217 TypA Predicted membran 99.3 1.8E-10 3.9E-15 88.4 13.1 162 7-181 6-198 (603)
307 PRK07560 elongation factor EF- 99.3 2.8E-11 6E-16 100.9 9.2 117 4-124 18-153 (731)
308 COG5257 GCD11 Translation init 99.2 1.5E-10 3.3E-15 84.9 9.8 162 5-181 9-205 (415)
309 COG3276 SelB Selenocysteine-sp 99.2 1.3E-10 2.7E-15 88.7 9.3 158 7-178 1-162 (447)
310 PRK09601 GTP-binding protein Y 99.2 4.8E-10 1E-14 85.3 11.7 82 7-88 3-107 (364)
311 KOG1486 GTP-binding protein DR 99.2 2.4E-09 5.2E-14 76.3 14.3 91 4-96 60-158 (364)
312 COG0378 HypB Ni2+-binding GTPa 99.2 7.2E-10 1.6E-14 76.1 10.7 81 79-177 119-200 (202)
313 COG0050 TufB GTPases - transla 99.2 3.8E-10 8.2E-15 82.0 9.7 166 4-180 10-203 (394)
314 TIGR00750 lao LAO/AO transport 99.2 3.5E-10 7.5E-15 85.1 10.0 108 53-178 126-238 (300)
315 PF00503 G-alpha: G-protein al 99.1 1E-09 2.2E-14 85.5 12.1 124 54-177 236-389 (389)
316 smart00053 DYNc Dynamin, GTPas 99.1 8.4E-10 1.8E-14 79.7 10.3 69 54-125 125-207 (240)
317 COG4108 PrfC Peptide chain rel 99.1 1E-09 2.2E-14 83.8 10.4 116 7-126 13-149 (528)
318 COG0480 FusA Translation elong 99.1 1.7E-09 3.6E-14 88.8 12.2 118 3-125 7-143 (697)
319 TIGR00993 3a0901s04IAP86 chlor 99.1 7.3E-10 1.6E-14 89.1 9.9 117 6-125 118-251 (763)
320 cd01855 YqeH YqeH. YqeH is an 99.1 6E-10 1.3E-14 78.4 8.3 95 67-178 24-125 (190)
321 KOG0468 U5 snRNP-specific prot 99.1 4E-10 8.6E-15 89.8 7.6 116 4-123 126-262 (971)
322 cd01859 MJ1464 MJ1464. This f 99.1 5.9E-10 1.3E-14 76.0 6.9 93 69-178 4-96 (156)
323 PRK10463 hydrogenase nickel in 99.1 1.6E-09 3.6E-14 79.8 9.4 56 111-176 231-287 (290)
324 PRK00098 GTPase RsgA; Reviewed 99.1 1.6E-09 3.4E-14 81.4 9.5 87 74-174 77-163 (298)
325 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.8E-09 6E-14 79.6 9.1 88 72-175 73-161 (287)
326 COG5019 CDC3 Septin family pro 99.0 1.2E-08 2.6E-13 76.5 11.7 116 5-125 22-177 (373)
327 KOG1143 Predicted translation 99.0 8.6E-09 1.9E-13 77.4 10.4 167 6-177 167-386 (591)
328 PRK12289 GTPase RsgA; Reviewed 99.0 7.4E-09 1.6E-13 79.1 10.3 91 70-176 82-173 (352)
329 KOG2486 Predicted GTPase [Gene 99.0 1.7E-09 3.6E-14 78.0 6.2 166 4-176 134-314 (320)
330 KOG1547 Septin CDC10 and relat 98.9 1.4E-08 3E-13 71.9 9.9 114 6-123 46-197 (336)
331 KOG2655 Septin family protein 98.9 3.7E-08 7.9E-13 74.4 12.8 115 6-125 21-173 (366)
332 TIGR03597 GTPase_YqeH ribosome 98.9 5E-09 1.1E-13 80.7 8.0 96 64-176 50-151 (360)
333 PRK12288 GTPase RsgA; Reviewed 98.9 1.3E-08 2.7E-13 77.8 9.3 89 75-176 118-206 (347)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6E-09 1.3E-13 69.8 6.4 54 8-64 85-138 (141)
335 PF03308 ArgK: ArgK protein; 98.9 4.9E-09 1.1E-13 75.5 5.5 101 54-178 122-230 (266)
336 cd01900 YchF YchF subfamily. 98.9 3.7E-09 8E-14 77.9 4.9 80 9-88 1-103 (274)
337 COG1703 ArgK Putative periplas 98.9 2.7E-08 5.9E-13 72.8 9.2 108 54-180 144-256 (323)
338 COG5258 GTPBP1 GTPase [General 98.8 4E-08 8.7E-13 74.1 10.0 167 3-173 114-334 (527)
339 COG0012 Predicted GTPase, prob 98.8 1.2E-07 2.5E-12 71.7 12.3 83 6-88 2-108 (372)
340 KOG0460 Mitochondrial translat 98.8 3.9E-08 8.4E-13 73.0 9.5 149 3-161 51-218 (449)
341 cd01858 NGP_1 NGP-1. Autoanti 98.8 3E-08 6.6E-13 67.6 8.0 91 74-178 5-95 (157)
342 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.4E-08 7.3E-13 67.4 6.9 54 5-63 101-156 (157)
343 KOG0410 Predicted GTP binding 98.8 1.6E-08 3.6E-13 74.5 5.4 151 4-179 176-342 (410)
344 cd04178 Nucleostemin_like Nucl 98.7 3.7E-08 8E-13 68.0 6.7 54 5-63 116-171 (172)
345 KOG0463 GTP-binding protein GP 98.7 2.2E-07 4.8E-12 70.1 10.1 168 6-179 133-358 (641)
346 KOG1487 GTP-binding protein DR 98.7 2.7E-07 5.9E-12 66.3 9.9 87 7-95 60-154 (358)
347 cd01856 YlqF YlqF. Proteins o 98.7 6.5E-08 1.4E-12 66.9 6.7 55 5-64 114-170 (171)
348 cd01856 YlqF YlqF. Proteins o 98.7 3.7E-08 8.1E-13 68.1 5.2 99 61-178 2-101 (171)
349 KOG1954 Endocytosis/signaling 98.7 1.5E-07 3.3E-12 70.7 8.6 115 7-125 59-226 (532)
350 PF09547 Spore_IV_A: Stage IV 98.7 2.2E-06 4.7E-11 66.0 14.9 160 6-181 17-237 (492)
351 cd01849 YlqF_related_GTPase Yl 98.7 1.8E-07 3.8E-12 63.7 8.0 83 79-177 1-84 (155)
352 cd01859 MJ1464 MJ1464. This f 98.7 1.1E-07 2.4E-12 64.7 7.0 56 5-63 100-155 (156)
353 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.3E-07 2.9E-12 63.3 6.8 77 74-165 8-84 (141)
354 TIGR03596 GTPase_YlqF ribosome 98.6 1.3E-07 2.8E-12 70.4 7.3 55 5-64 117-173 (276)
355 PF03193 DUF258: Protein of un 98.6 4.1E-08 8.9E-13 66.4 3.7 59 7-68 36-101 (161)
356 COG5192 BMS1 GTP-binding prote 98.6 1.7E-07 3.6E-12 74.2 7.2 111 4-125 67-178 (1077)
357 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.6E-07 5.6E-12 69.2 7.7 55 5-64 120-176 (287)
358 TIGR03596 GTPase_YlqF ribosome 98.5 1.9E-07 4.2E-12 69.5 6.1 100 61-179 4-104 (276)
359 cd01855 YqeH YqeH. YqeH is an 98.5 1.4E-07 3.1E-12 66.3 4.9 25 6-30 127-151 (190)
360 cd01849 YlqF_related_GTPase Yl 98.5 5.1E-07 1.1E-11 61.4 6.9 54 5-63 99-154 (155)
361 PRK12288 GTPase RsgA; Reviewed 98.5 2E-07 4.2E-12 71.3 5.3 22 9-30 208-229 (347)
362 PRK13796 GTPase YqeH; Provisio 98.5 6.2E-07 1.4E-11 69.3 8.0 94 66-176 58-157 (365)
363 KOG0448 Mitofusin 1 GTPase, in 98.5 2.3E-06 4.9E-11 69.1 11.1 118 4-125 107-276 (749)
364 KOG0085 G protein subunit Galp 98.5 1E-07 2.2E-12 67.3 3.2 128 52-180 197-351 (359)
365 TIGR00092 GTP-binding protein 98.5 6E-07 1.3E-11 68.6 7.2 82 7-88 3-108 (368)
366 COG1161 Predicted GTPases [Gen 98.4 6.1E-07 1.3E-11 68.1 6.5 56 5-64 131-187 (322)
367 PRK09563 rbgA GTPase YlqF; Rev 98.4 4.1E-07 8.8E-12 68.1 5.1 101 60-179 6-107 (287)
368 cd01851 GBP Guanylate-binding 98.4 1.8E-06 3.9E-11 62.3 8.2 88 4-91 5-105 (224)
369 TIGR03348 VI_IcmF type VI secr 98.4 6.6E-07 1.4E-11 78.6 6.8 112 9-124 114-257 (1169)
370 KOG0467 Translation elongation 98.4 1.2E-06 2.7E-11 71.3 7.5 117 2-122 5-136 (887)
371 PRK01889 GTPase RsgA; Reviewed 98.4 3.1E-06 6.8E-11 65.2 8.8 84 74-174 109-193 (356)
372 KOG0466 Translation initiation 98.4 2.6E-07 5.7E-12 67.8 2.6 112 55-180 126-243 (466)
373 KOG0099 G protein subunit Galp 98.4 1.7E-06 3.7E-11 62.4 6.6 72 53-125 201-284 (379)
374 cd03112 CobW_like The function 98.3 3.2E-06 7E-11 57.6 7.4 64 54-122 87-158 (158)
375 KOG3859 Septins (P-loop GTPase 98.3 4.8E-06 1E-10 60.6 8.2 58 6-63 42-104 (406)
376 PRK12289 GTPase RsgA; Reviewed 98.3 8.7E-07 1.9E-11 67.9 4.7 22 9-30 175-196 (352)
377 TIGR00157 ribosome small subun 98.3 1E-06 2.2E-11 64.4 4.8 23 8-30 122-144 (245)
378 COG1162 Predicted GTPases [Gen 98.3 7.2E-07 1.6E-11 65.9 3.9 58 8-68 166-230 (301)
379 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.1E-06 2.4E-11 65.8 4.8 24 7-30 162-185 (287)
380 TIGR03597 GTPase_YqeH ribosome 98.3 1.8E-06 3.9E-11 66.7 5.6 54 7-65 155-215 (360)
381 PF11111 CENP-M: Centromere pr 98.3 0.00014 3.1E-09 49.5 13.8 141 1-178 10-153 (176)
382 KOG4273 Uncharacterized conser 98.2 4.3E-05 9.4E-10 54.9 11.5 164 6-176 4-220 (418)
383 COG1618 Predicted nucleotide k 98.2 6E-05 1.3E-09 50.6 11.3 56 5-62 4-59 (179)
384 PRK10416 signal recognition pa 98.2 5.8E-05 1.2E-09 57.3 12.5 95 53-170 196-302 (318)
385 KOG0447 Dynamin-like GTP bindi 98.2 1.8E-05 3.8E-10 62.9 9.7 71 55-127 413-496 (980)
386 PRK00098 GTPase RsgA; Reviewed 98.2 3.2E-06 6.9E-11 63.7 5.1 23 8-30 166-188 (298)
387 KOG1491 Predicted GTP-binding 98.1 1.1E-05 2.3E-10 60.4 7.2 85 4-88 18-125 (391)
388 TIGR00064 ftsY signal recognit 98.1 1.5E-05 3.2E-10 59.2 7.9 95 53-170 154-260 (272)
389 KOG1534 Putative transcription 98.1 2.4E-06 5.3E-11 59.6 3.4 71 110-180 164-253 (273)
390 PRK13796 GTPase YqeH; Provisio 98.1 3.7E-06 7.9E-11 65.1 4.7 23 7-29 161-183 (365)
391 PRK14974 cell division protein 98.1 1.7E-05 3.7E-10 60.4 7.4 94 54-170 223-322 (336)
392 PF06858 NOG1: Nucleolar GTP-b 98.0 3E-05 6.5E-10 42.6 5.8 44 77-121 13-58 (58)
393 COG1162 Predicted GTPases [Gen 98.0 9.2E-05 2E-09 55.0 10.1 92 72-176 74-165 (301)
394 PF03266 NTPase_1: NTPase; In 98.0 1.9E-05 4.1E-10 54.3 5.3 52 8-61 1-52 (168)
395 KOG0469 Elongation factor 2 [T 97.9 3.1E-05 6.8E-10 60.9 6.5 116 4-123 17-163 (842)
396 KOG0464 Elongation factor G [T 97.9 3.5E-06 7.6E-11 64.6 1.3 116 5-124 36-168 (753)
397 PRK13695 putative NTPase; Prov 97.9 0.00059 1.3E-08 47.3 12.3 22 7-28 1-22 (174)
398 KOG0459 Polypeptide release fa 97.9 3.2E-05 6.9E-10 59.2 6.0 165 3-171 76-279 (501)
399 KOG2485 Conserved ATP/GTP bind 97.9 1.4E-05 2.9E-10 59.2 3.8 60 4-64 141-206 (335)
400 TIGR01425 SRP54_euk signal rec 97.9 3.7E-05 8E-10 60.3 6.4 67 53-125 182-254 (429)
401 KOG1533 Predicted GTPase [Gene 97.8 1.5E-05 3.2E-10 56.7 2.8 120 54-176 97-251 (290)
402 COG3523 IcmF Type VI protein s 97.8 3E-05 6.5E-10 67.3 4.7 112 9-124 128-270 (1188)
403 KOG0465 Mitochondrial elongati 97.7 5.2E-05 1.1E-09 60.8 5.0 112 7-124 40-170 (721)
404 cd02038 FleN-like FleN is a me 97.7 0.00017 3.7E-09 48.0 6.4 106 10-123 4-110 (139)
405 KOG1424 Predicted GTP-binding 97.7 6E-05 1.3E-09 59.4 4.5 55 6-64 314-369 (562)
406 PRK11537 putative GTP-binding 97.7 0.0022 4.7E-08 48.9 12.4 25 5-29 3-27 (318)
407 COG0523 Putative GTPases (G3E 97.6 0.005 1.1E-07 46.9 14.2 77 77-171 116-194 (323)
408 TIGR00235 udk uridine kinase. 97.6 7.3E-05 1.6E-09 53.4 4.0 29 1-29 1-29 (207)
409 PRK08118 topology modulation p 97.6 5.4E-05 1.2E-09 52.1 3.2 23 7-29 2-24 (167)
410 PF13207 AAA_17: AAA domain; P 97.6 5.7E-05 1.2E-09 48.9 3.1 22 8-29 1-22 (121)
411 COG0563 Adk Adenylate kinase a 97.6 5.8E-05 1.3E-09 52.4 3.2 23 7-29 1-23 (178)
412 PRK07261 topology modulation p 97.6 6.6E-05 1.4E-09 51.9 3.2 23 7-29 1-23 (171)
413 PF13555 AAA_29: P-loop contai 97.6 8.4E-05 1.8E-09 41.9 3.0 21 8-28 25-45 (62)
414 PRK10751 molybdopterin-guanine 97.6 9.3E-05 2E-09 51.0 3.7 29 1-29 1-29 (173)
415 PRK10867 signal recognition pa 97.6 0.0007 1.5E-08 53.5 9.0 22 5-26 99-120 (433)
416 PRK14737 gmk guanylate kinase; 97.6 0.00011 2.3E-09 51.6 4.0 23 7-29 5-27 (186)
417 KOG2484 GTPase [General functi 97.5 0.00011 2.4E-09 56.2 4.0 57 4-64 250-307 (435)
418 cd00009 AAA The AAA+ (ATPases 97.5 0.00054 1.2E-08 45.4 6.9 26 6-31 19-44 (151)
419 PRK14738 gmk guanylate kinase; 97.5 0.00016 3.5E-09 51.5 4.3 25 5-29 12-36 (206)
420 PRK12727 flagellar biosynthesi 97.5 0.00071 1.5E-08 54.4 8.2 21 7-27 351-371 (559)
421 PF13671 AAA_33: AAA domain; P 97.5 9.4E-05 2E-09 49.4 2.8 21 9-29 2-22 (143)
422 PRK00771 signal recognition pa 97.5 0.00033 7.3E-09 55.4 6.2 23 5-27 94-116 (437)
423 COG0194 Gmk Guanylate kinase [ 97.5 0.00012 2.6E-09 50.5 3.2 26 5-30 3-28 (191)
424 COG1126 GlnQ ABC-type polar am 97.5 0.00016 3.4E-09 51.2 3.6 23 8-30 30-52 (240)
425 COG1419 FlhF Flagellar GTP-bin 97.4 0.00031 6.7E-09 54.3 5.4 20 8-27 205-224 (407)
426 COG1136 SalX ABC-type antimicr 97.4 0.00012 2.6E-09 52.4 2.9 21 9-29 34-54 (226)
427 cd02019 NK Nucleoside/nucleoti 97.4 0.00018 3.8E-09 41.8 3.1 21 9-29 2-22 (69)
428 COG1116 TauB ABC-type nitrate/ 97.4 0.00014 3E-09 52.5 3.0 21 9-29 32-52 (248)
429 PRK05480 uridine/cytidine kina 97.4 0.00021 4.6E-09 51.0 4.0 26 4-29 4-29 (209)
430 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0013 2.9E-08 40.3 7.2 69 9-90 2-71 (99)
431 PF13521 AAA_28: AAA domain; P 97.4 0.00011 2.4E-09 50.3 2.3 22 8-29 1-22 (163)
432 PF04665 Pox_A32: Poxvirus A32 97.4 0.00018 3.9E-09 52.2 3.3 25 5-29 12-36 (241)
433 KOG3929 Uncharacterized conser 97.4 5.7E-05 1.2E-09 54.6 0.5 166 4-178 43-252 (363)
434 cd02042 ParA ParA and ParB of 97.3 0.00087 1.9E-08 42.1 5.9 82 9-102 2-84 (104)
435 PRK06217 hypothetical protein; 97.3 0.00021 4.6E-09 49.9 3.2 23 7-29 2-24 (183)
436 cd04178 Nucleostemin_like Nucl 97.3 0.00076 1.6E-08 46.7 5.8 44 79-124 1-44 (172)
437 PRK01889 GTPase RsgA; Reviewed 97.3 0.00027 5.8E-09 54.7 3.9 24 7-30 196-219 (356)
438 PRK14530 adenylate kinase; Pro 97.3 0.00028 6.1E-09 50.6 3.7 21 8-28 5-25 (215)
439 KOG2423 Nucleolar GTPase [Gene 97.3 0.00013 2.7E-09 56.0 1.7 59 2-63 303-361 (572)
440 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00027 5.8E-09 44.6 2.8 20 8-27 17-36 (107)
441 PF00005 ABC_tran: ABC transpo 97.3 0.00027 5.9E-09 46.8 3.0 23 8-30 13-35 (137)
442 cd00071 GMPK Guanosine monopho 97.3 0.00028 6.2E-09 46.9 3.1 21 9-29 2-22 (137)
443 PF03205 MobB: Molybdopterin g 97.2 0.00031 6.8E-09 46.8 3.1 22 8-29 2-23 (140)
444 PF13238 AAA_18: AAA domain; P 97.2 0.00028 6.1E-09 46.0 2.9 21 9-29 1-21 (129)
445 PTZ00088 adenylate kinase 1; P 97.2 0.00039 8.6E-09 50.3 3.7 28 1-28 1-28 (229)
446 PRK14527 adenylate kinase; Pro 97.2 0.00039 8.5E-09 48.9 3.6 28 1-28 1-28 (191)
447 PRK03839 putative kinase; Prov 97.2 0.00033 7.2E-09 48.8 3.2 22 8-29 2-23 (180)
448 smart00382 AAA ATPases associa 97.2 0.00037 8.1E-09 45.8 3.3 27 7-33 3-29 (148)
449 COG3638 ABC-type phosphate/pho 97.2 0.0003 6.5E-09 50.4 2.9 21 8-28 32-52 (258)
450 PRK10078 ribose 1,5-bisphospho 97.2 0.00035 7.5E-09 49.0 3.2 22 8-29 4-25 (186)
451 COG1117 PstB ABC-type phosphat 97.2 0.0011 2.5E-08 46.9 5.6 21 8-28 35-55 (253)
452 PRK14723 flhF flagellar biosyn 97.2 0.0017 3.6E-08 54.6 7.2 20 8-27 187-206 (767)
453 TIGR02322 phosphon_PhnN phosph 97.2 0.00039 8.4E-09 48.4 3.1 22 8-29 3-24 (179)
454 PF00004 AAA: ATPase family as 97.1 0.00045 9.8E-09 45.2 3.1 21 9-29 1-21 (132)
455 cd03238 ABC_UvrA The excision 97.1 0.00048 1E-08 47.8 3.2 21 7-27 22-42 (176)
456 TIGR03263 guanyl_kin guanylate 97.1 0.00045 9.7E-09 48.1 3.0 22 8-29 3-24 (180)
457 PRK14532 adenylate kinase; Pro 97.1 0.00053 1.1E-08 48.1 3.2 23 7-29 1-23 (188)
458 KOG0780 Signal recognition par 97.1 0.00054 1.2E-08 52.5 3.3 50 52-101 182-237 (483)
459 cd03110 Fer4_NifH_child This p 97.1 0.0042 9.1E-08 43.1 7.6 85 52-156 91-175 (179)
460 COG3840 ThiQ ABC-type thiamine 97.1 0.00057 1.2E-08 47.2 3.1 21 8-28 27-47 (231)
461 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00051 1.1E-08 48.0 3.0 23 6-28 3-25 (188)
462 cd01130 VirB11-like_ATPase Typ 97.1 0.0006 1.3E-08 47.8 3.3 23 7-29 26-48 (186)
463 PF07728 AAA_5: AAA domain (dy 97.1 0.0006 1.3E-08 45.3 3.0 21 8-28 1-21 (139)
464 PF02367 UPF0079: Uncharacteri 97.0 0.0028 6E-08 41.2 5.9 23 7-29 16-38 (123)
465 cd01131 PilT Pilus retraction 97.0 0.00057 1.2E-08 48.4 3.1 22 9-30 4-25 (198)
466 cd02023 UMPK Uridine monophosp 97.0 0.00058 1.2E-08 48.3 3.1 21 9-29 2-22 (198)
467 PRK08233 hypothetical protein; 97.0 0.00074 1.6E-08 47.0 3.6 24 6-29 3-26 (182)
468 PRK06547 hypothetical protein; 97.0 0.00077 1.7E-08 46.6 3.6 26 4-29 13-38 (172)
469 PRK13949 shikimate kinase; Pro 97.0 0.00067 1.5E-08 46.8 3.3 21 8-28 3-23 (169)
470 COG4962 CpaF Flp pilus assembl 97.0 0.0013 2.8E-08 49.8 4.8 25 7-31 174-198 (355)
471 cd03111 CpaE_like This protein 97.0 0.0024 5.2E-08 40.4 5.3 61 55-119 44-106 (106)
472 PRK00300 gmk guanylate kinase; 97.0 0.00067 1.4E-08 48.2 3.1 23 7-29 6-28 (205)
473 PRK00625 shikimate kinase; Pro 97.0 0.00074 1.6E-08 46.8 3.1 22 7-28 1-22 (173)
474 PLN02674 adenylate kinase 97.0 0.00085 1.8E-08 48.9 3.5 26 3-28 28-53 (244)
475 PRK02496 adk adenylate kinase; 97.0 0.00085 1.8E-08 46.9 3.4 22 7-28 2-23 (184)
476 PRK13851 type IV secretion sys 97.0 0.0031 6.7E-08 48.5 6.5 26 6-31 162-187 (344)
477 cd01428 ADK Adenylate kinase ( 97.0 0.0007 1.5E-08 47.6 2.9 22 8-29 1-22 (194)
478 COG3839 MalK ABC-type sugar tr 97.0 0.0007 1.5E-08 51.5 3.0 22 9-30 32-53 (338)
479 PLN02200 adenylate kinase fami 97.0 0.0011 2.3E-08 48.3 3.9 24 5-28 42-65 (234)
480 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0023 5E-08 42.1 5.1 23 7-29 23-45 (133)
481 PRK14531 adenylate kinase; Pro 97.0 0.00086 1.9E-08 46.9 3.3 23 7-29 3-25 (183)
482 PF13191 AAA_16: AAA ATPase do 96.9 0.00069 1.5E-08 47.1 2.8 24 5-28 23-46 (185)
483 PRK05057 aroK shikimate kinase 96.9 0.001 2.2E-08 46.0 3.5 23 7-29 5-27 (172)
484 PHA00729 NTP-binding motif con 96.9 0.00097 2.1E-08 47.9 3.4 25 5-29 16-40 (226)
485 cd02025 PanK Pantothenate kina 96.9 0.00077 1.7E-08 48.6 2.9 20 9-28 2-21 (220)
486 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0012 2.6E-08 45.9 3.7 23 8-30 27-49 (177)
487 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.9 0.0032 7E-08 44.8 6.0 80 7-107 39-118 (205)
488 PRK09270 nucleoside triphospha 96.9 0.0012 2.6E-08 47.9 3.8 26 4-29 31-56 (229)
489 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00089 1.9E-08 46.7 3.0 21 9-29 2-22 (183)
490 PF13401 AAA_22: AAA domain; P 96.9 0.00086 1.9E-08 43.9 2.8 22 8-29 6-27 (131)
491 COG1120 FepC ABC-type cobalami 96.9 0.00087 1.9E-08 49.1 3.0 20 9-28 31-50 (258)
492 PRK05416 glmZ(sRNA)-inactivati 96.9 0.008 1.7E-07 45.1 8.1 21 7-27 7-27 (288)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00096 2.1E-08 47.9 3.2 22 8-29 32-53 (218)
494 COG4525 TauB ABC-type taurine 96.9 0.00087 1.9E-08 46.9 2.7 21 8-28 33-53 (259)
495 PRK13900 type IV secretion sys 96.9 0.00086 1.9E-08 51.3 3.0 25 6-30 160-184 (332)
496 TIGR01351 adk adenylate kinase 96.9 0.00081 1.8E-08 48.1 2.8 21 8-28 1-21 (210)
497 TIGR00960 3a0501s02 Type II (G 96.9 0.00098 2.1E-08 47.8 3.2 22 8-29 31-52 (216)
498 PRK04195 replication factor C 96.9 0.012 2.5E-07 47.7 9.6 24 6-29 39-62 (482)
499 KOG3347 Predicted nucleotide k 96.9 0.00079 1.7E-08 44.8 2.4 25 4-28 5-29 (176)
500 cd03225 ABC_cobalt_CbiO_domain 96.9 0.001 2.2E-08 47.5 3.2 22 8-29 29-50 (211)
No 1
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-42 Score=230.62 Aligned_cols=169 Identities=32% Similarity=0.606 Sum_probs=156.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|..+||||||+.|+..+.|.+...+|++ ..+...+.+++..+.+.||||+|+++|.++.++|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5679999999999999999999999999998899996 455778888888999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||+++.+||..+ +.|+..++... |++.+.+||||+|+.+.+. +..++++.+++..+. .|+|+||+
T Consensus 83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence 99999999999999 89999999998 6888899999999988665 899999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCchh
Q 036449 162 TQQNVKAVFDAAIRVVLQPPKTK 184 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~~~ 184 (197)
++.|++++|..|.+.+.......
T Consensus 151 Tg~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred cccCHHHHHHHHHHhccCccccc
Confidence 99999999999999998875543
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-41 Score=228.38 Aligned_cols=167 Identities=36% Similarity=0.698 Sum_probs=155.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..-+||+++|.+|||||+|+.||..+.|.+.+..|++..+ ...+.++++.+.+++|||+||++|++....+++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 4569999999999999999999999999999999997655 577889999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||+++.+||..+ ..|+..+.... ++.|.++||||+|+.+.+. ++.++++.|+..++.+.|+|+||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 89999999998 6889999999999988776 899999999999999449999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.|+++.|..|...+..+.
T Consensus 156 ~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CccCHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.6e-40 Score=232.90 Aligned_cols=188 Identities=57% Similarity=0.985 Sum_probs=157.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+||+++|..|||||||+.++..+.|...+.||.+..+...+.+++..+.+++|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999999999999877776677888899999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++.+|+.+...|...+....+++|+++||||.|+.+..... ........+..++++.+++..+..+|+++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999557888887766889999999999996542100 001112346778899999999855899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449 163 QQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL 197 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
|.|++++|.++++.+..+...+ ++.+|.+|
T Consensus 162 g~~v~e~f~~l~~~~~~~~~~~-----~~~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTPIK-----DTKSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhcccccc-----CCCCceeC
Confidence 9999999999999987754211 22259876
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.5e-40 Score=227.19 Aligned_cols=174 Identities=87% Similarity=1.380 Sum_probs=152.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||+.++..+.|..++.+|.+..+...+.+++..+.+++|||+|+++|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999987777777788889999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 166 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (197)
++++++|+.+...|+..+....++.|+++||||+|+.+.+......+..+.++.++++.+++..+..+|+||||++|.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999985689999887778899999999999966432112233345578899999999998756999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 036449 167 KAVFDAAIRVVLQP 180 (197)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (197)
+++|+.+++.+.+.
T Consensus 162 ~~~F~~~~~~~~~~ 175 (176)
T cd04133 162 KAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987554
No 5
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-39 Score=233.00 Aligned_cols=176 Identities=36% Similarity=0.667 Sum_probs=152.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+||+++|.+|||||||+.+|..+.|...+.||.+..+...+.+++..+.+++|||+|++.|..+++.++.++|++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 45899999999999999999999999999999999877877788899999999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc--CCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++++|+.+...|+..+....++.|+++||||+|+........ .....+.++.++++++++..++..|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 9999999999865789999988778899999999999864211000 00112457889999999999985699999999
Q ss_pred CC-CHHHHHHHHHHHHcCC
Q 036449 163 QQ-NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~-~i~~l~~~i~~~~~~~ 180 (197)
|. |++++|..+++.+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 97 8999999999887664
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-40 Score=219.36 Aligned_cols=166 Identities=35% Similarity=0.566 Sum_probs=153.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.+|++++|..+|||||||.+|..+.|...|.+|++..+ ...+.+.+..+.+++|||+||++|+++.+.|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 559999999999999999999999999999999997555 6778899999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++|..||+.. ..|++.+.... + +..+++||||.||.+.++ +..+++...++++++ .|+++||+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence 9999999999999 89998888776 4 578889999999988776 889999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 036449 162 TQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~ 182 (197)
.|.||+++|..|...+.....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999999998877643
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.9e-39 Score=224.04 Aligned_cols=177 Identities=37% Similarity=0.709 Sum_probs=152.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+...+||+++|.+|+|||||+.++..+.+...+.||.+..+...+.+++..+.+++|||+|++.|..++..+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35678999999999999999999999999999999998887777888999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++.+|+.+...|+..+....++.|+++||||+|+.+..... ......+.++.++++++++..++.+|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997679999998887899999999999996421100 0001123478899999999999658999999
Q ss_pred CCCCC-HHHHHHHHHHHHcC
Q 036449 161 KTQQN-VKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~-i~~l~~~i~~~~~~ 179 (197)
++|.| |+++|..+++.+..
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999986543
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.5e-39 Score=224.85 Aligned_cols=180 Identities=29% Similarity=0.521 Sum_probs=154.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|..|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999988888777775444 455677888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++.+|+.+ ..|++.+....++.|++|||||.|+.+.+. ++.++++.+++..+. +|++|||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999 789999987778999999999999976543 778899999999987 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCch---hhhhhccccccc
Q 036449 163 QQNVKAVFDAAIRVVLQPPKT---KKKKNKAQKACS 195 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~~---~~~~~~~~~~c~ 195 (197)
|.||+++|+++++.+...... +.++.-..+.|-
T Consensus 152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 187 (189)
T cd04121 152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCK 187 (189)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCccc
Confidence 999999999999988754332 223344444453
No 9
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-39 Score=210.29 Aligned_cols=165 Identities=32% Similarity=0.644 Sum_probs=153.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|+|||||+.+|..+.|.+..+.|++..+ ...+.+++..+++.+|||+||++|+.+.+.|++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 459999999999999999999999999998888787555 5678899999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++.+++|..+ +.|++.+..+. +++..++|+||+|..+++. ++.+++..|++++++ -|+|+||+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk 157 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK 157 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence 9999999999999 99999999887 7888899999999877665 899999999999999 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
+.+|+...|+.++..+.+.+
T Consensus 158 t~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 158 TRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhccHHHHHHHHHHHHhcCc
Confidence 99999999999999988764
No 10
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.2e-38 Score=222.80 Aligned_cols=187 Identities=43% Similarity=0.716 Sum_probs=156.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.|..++..++.+++++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888889877777677778888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++|+.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..++...+..+|+++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 9999999998557999888777899999999999997643210 00111123566778888888875589999999999
Q ss_pred CHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449 165 NVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL 197 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
|++++|.++++.+..... ..+.+++|+||
T Consensus 161 ~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRP----PHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence 999999999999986544 44567789887
No 11
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.4e-38 Score=223.73 Aligned_cols=185 Identities=49% Similarity=0.875 Sum_probs=158.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|+|||||++++..+.+...+.++.+..+...+... +..+.+++|||||++++..++..++.++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877766666665 67789999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
|++++++++.+...|+..+....++.|+++|+||.|+..... ....+..+++++++..++..+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 999999999986678888876667899999999999965331 12235677888999998876899999999999
Q ss_pred HHHHHHHHHHHHcCCCch-hhhhhccccccccC
Q 036449 166 VKAVFDAAIRVVLQPPKT-KKKKNKAQKACSIL 197 (197)
Q Consensus 166 i~~l~~~i~~~~~~~~~~-~~~~~~~~~~c~~~ 197 (197)
++++|..+++.+...... +..+.+++.+|++|
T Consensus 155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 999999999988876544 55677788899987
No 12
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.4e-38 Score=220.17 Aligned_cols=172 Identities=37% Similarity=0.719 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.||.+..+...+.+++..+.+++|||+|++.|..+++.++.++|++|+|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 79999999999999999999999999999999987777778888999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++|+.+...|+..+....++.|+++||||+|+.+..... ..+...+.++.++++++++.+++.+|+||||++|.
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 9999999996578999998888899999999999996421100 00011234788999999999997679999999999
Q ss_pred C-HHHHHHHHHHHHc
Q 036449 165 N-VKAVFDAAIRVVL 178 (197)
Q Consensus 165 ~-i~~l~~~i~~~~~ 178 (197)
+ ++++|..+++...
T Consensus 162 ~~v~~~F~~~~~~~~ 176 (178)
T cd04131 162 KSVRDIFHVATMACL 176 (178)
T ss_pred cCHHHHHHHHHHHHh
Confidence 5 9999999998654
No 13
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-39 Score=218.88 Aligned_cols=168 Identities=34% Similarity=0.645 Sum_probs=156.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
....++|+++|.+|||||+++.+|..+.|...+..|.+..+ ...+.+++..+.+++|||.||++|+.+...|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 45679999999999999999999999999999999997555 67788999999999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
++|||+++..||+.+ ..|+..+.... ++.|+++||||+|+...+. ++.+.++++|.++|. .|+|+||
T Consensus 89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA 156 (207)
T KOG0078|consen 89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA 156 (207)
T ss_pred EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence 999999999999999 67999999999 5999999999999987665 899999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCc
Q 036449 161 KTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
++|.||++.|-.|++.+..+..
T Consensus 157 k~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999998886433
No 14
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.1e-38 Score=226.30 Aligned_cols=174 Identities=36% Similarity=0.727 Sum_probs=151.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+|+|.+|||||||+.+|..+.++..+.||....+...+.+++..+.+.+|||+|++.|..+++.++.++|++|+|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999988887778889999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++|+.+...|...+....++.|+++||||+|+....... ........++.+++..+++..++.+|+||||+++.
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 9999999999778988887777899999999999996532110 00111234778899999999997689999999988
Q ss_pred C-HHHHHHHHHHHHcCC
Q 036449 165 N-VKAVFDAAIRVVLQP 180 (197)
Q Consensus 165 ~-i~~l~~~i~~~~~~~ 180 (197)
+ |+++|...+......
T Consensus 162 ~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 162 RSVRDVFHVATVASLGR 178 (222)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 5 999999999977664
No 15
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-39 Score=214.20 Aligned_cols=169 Identities=29% Similarity=0.574 Sum_probs=157.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|+....+|++++|..|||||+|+.+|..+.|.+.+..|.+..+ ...+.++++.+++++|||+||+.|++....|++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6778889999999999999999999999999999999997666 567889999999999999999999999999999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
++|+|||++++++|..+ ..|+..++... +|+.++++|||+||...+. ++.++++.||++.+. .|+++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence 99999999999999999 88998888886 8999999999999987665 999999999999998 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
||+++.|++|.|..+...+++..
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.1e-38 Score=223.20 Aligned_cols=178 Identities=38% Similarity=0.635 Sum_probs=152.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||+++|..+.+...+.++.+..+.....+++..+.+++||+||+++|..++..++..+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999999988888888777766777888888999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 88 ISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
+++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +...++..+++.++. +|+++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 67877776542 4789999999999976443 566777888888887 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCCch--------hhhhhccccccccC
Q 036449 164 QNVKAVFDAAIRVVLQPPKT--------KKKKNKAQKACSIL 197 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~~~~~~--------~~~~~~~~~~c~~~ 197 (197)
.|++++|+++++.+..+... ..+..|++.+|.+|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999987754332 33567777788776
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5e-38 Score=221.90 Aligned_cols=162 Identities=32% Similarity=0.590 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+.|+++|..|||||||++++..+.|...+.+|.+.. ....+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999999998888888644 4566778888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~ 163 (197)
|++++++|+.+ ..|+..+.... ++.|+++||||+|+...+. +..+++.++++.. +. .|++|||++|
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence 99999999999 78998887765 6899999999999975443 6778888898876 55 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 036449 164 QNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~~~ 180 (197)
.|++++|.++++.+...
T Consensus 149 ~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 149 FNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 18
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.4e-37 Score=216.16 Aligned_cols=172 Identities=55% Similarity=0.991 Sum_probs=148.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|+|||||+.++..+.+...+.||.+..+...+.+++..+.+++||++|+++|..++..++.++|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999888999998777766778888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|++++++++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..++++++++..+...|+++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 99999999998557988888777889999999999986542211 1111234577889999999888558999999999
Q ss_pred CCHHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRVV 177 (197)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (197)
.|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 19
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=219.91 Aligned_cols=182 Identities=35% Similarity=0.570 Sum_probs=155.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++|||||+++|..++..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 55799999999999999999999999998888888887777777888888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..+++..+. +++++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999998 67887776554 5889999999999865433 566777888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC---chhhhhhccccccccC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP---KTKKKKNKAQKACSIL 197 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~---~~~~~~~~~~~~c~~~ 197 (197)
+|.|++++|.+|++.+.... .+.++++++++.|.++
T Consensus 151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 99999999999998776653 2333566666667764
No 20
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.4e-37 Score=215.54 Aligned_cols=164 Identities=25% Similarity=0.517 Sum_probs=146.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||+++|..++..++..+|++|+|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35899999999999999999999999988888998877777778888889999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++.+|+.+ ..|...+.... ++.|+++|+||+|+.+.+. ++.++++.+++..+. +|++|||++
T Consensus 81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~ 148 (172)
T cd04141 81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL 148 (172)
T ss_pred EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence 999999999999 67877777643 5899999999999976443 677888999998888 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
|.||+++|+++++.+...
T Consensus 149 ~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 149 RHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999987764
No 21
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.4e-37 Score=212.96 Aligned_cols=171 Identities=65% Similarity=1.094 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||+.++..+.+...+.++....+...+.+++..+.+++|||||++.|..++..++.++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999987777777778888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|++++++|+.+...|+..+....++.|+++|+||+|+.+..... ......+.++.++++.+++.++..+|++|||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999998667888887777889999999999996432100 1111234578899999999998668999999999
Q ss_pred CCHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRV 176 (197)
Q Consensus 164 ~~i~~l~~~i~~~ 176 (197)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999874
No 22
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=206.11 Aligned_cols=170 Identities=32% Similarity=0.587 Sum_probs=154.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||.++|.+|+|||||++++..++|...+..|++..+ .+.+.++++.+.+++|||+||++|.++.-.+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 3459999999999999999999999999999999997554 778899999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-C----CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-P----GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~----~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|||++++++|+.+ ..|.+.+-.+. | .-|+||+|||.|+.... .+.++...++.++...|..||||
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999 89988887766 3 57999999999997632 24589999999999999889999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
+|||...||++.|..+.+.++....
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999998887754
No 23
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=199.54 Aligned_cols=162 Identities=33% Similarity=0.633 Sum_probs=151.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
++.+++|.+|+|||+|+.+|..+.|+..|..|++-.+ ..++.++|..+.++|||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5678999999999999999999999999999997555 567888999999999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
|+++.+||... ..|++.++..++..|-++||||.|..+.+. +..++++.|+...+. .+||+|+++..|
T Consensus 89 DVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~N 156 (198)
T KOG0079|consen 89 DVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENEN 156 (198)
T ss_pred ECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhccc
Confidence 99999999999 899999999999999999999999977654 889999999999999 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 036449 166 VKAVFDAAIRVVLQP 180 (197)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (197)
++..|.-|.+++.+.
T Consensus 157 vE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 157 VEAMFHCITKQVLQA 171 (198)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999876654
No 24
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.1e-35 Score=206.73 Aligned_cols=171 Identities=63% Similarity=1.066 Sum_probs=148.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
|+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+++|||||++.+..++..++.++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888887777777788888899999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449 89 SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 166 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (197)
++++++.+...|+..+....++.|+++|+||+|+....... ........++.+++..+++..+..+++++||+++.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998667999998887899999999999997532111 1112223467788899999998768999999999999
Q ss_pred HHHHHHHHHHHcC
Q 036449 167 KAVFDAAIRVVLQ 179 (197)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (197)
+++|+.+++.+.+
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.7e-36 Score=205.97 Aligned_cols=162 Identities=30% Similarity=0.620 Sum_probs=142.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999888888876555 34566788889999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+..... ++.+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78888776654 6899999999999976543 677888899998887 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 036449 164 QNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~~ 179 (197)
.|++++|.++++.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.1e-36 Score=211.54 Aligned_cols=164 Identities=27% Similarity=0.468 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999999888888886544 4456666 7789999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+. +..+++.++++..+..+++++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999 78888776532 4789999999999975332 6678889999999855899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (197)
|++|.|++++|++|++.+....
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887754
No 27
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=9.6e-36 Score=204.81 Aligned_cols=159 Identities=31% Similarity=0.603 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777777888888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence 9999999988 67877776543 5899999999999976443 556677788888885 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+++++.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.6e-36 Score=213.33 Aligned_cols=161 Identities=28% Similarity=0.455 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|||||||+++|..+.+...+.+|.+ +.+...+.+++ ..+.+++||+||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888886 44455566654 578999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 85 FSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999998 78988887764 2468999999999975443 677788899998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.|++++|+++++.+..
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998865
No 29
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-36 Score=204.86 Aligned_cols=166 Identities=33% Similarity=0.576 Sum_probs=153.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..-+||+++|.+++|||-|+.+|..+.|..+..+|++-.+ +....++++.+..+||||+||++|+.....+++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 3558999999999999999999999999999999997555 677889999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||+++..+|+.+ ..|+..++.+. +++++++||||+||.+.+. +..++++.++...+. .|+++||.
T Consensus 92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl 159 (222)
T KOG0087|consen 92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL 159 (222)
T ss_pred EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence 99999999999998 89999999998 8999999999999987554 889999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
+..|+++.|..++..++..-
T Consensus 160 ~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 99999999999998877653
No 30
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-35 Score=208.42 Aligned_cols=178 Identities=29% Similarity=0.544 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..++.++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877778876544 455667787889999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... ++.|+++++||+|+.+... ++.+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999 67998888765 4789999999999975443 567788888888888 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCchh-------hhhhcccccccc
Q 036449 165 NVKAVFDAAIRVVLQPPKTK-------KKKNKAQKACSI 196 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~~~~-------~~~~~~~~~c~~ 196 (197)
|++++|.++++.+..+.... ..+.+++..|+|
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI 187 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence 99999999999887653322 245566677765
No 31
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-35 Score=203.71 Aligned_cols=161 Identities=30% Similarity=0.583 Sum_probs=141.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999988888888888777777788888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|++++++++.+ ..|...+.... ++.|+++|+||+|+.+... ...+++..+++..+. +++++||+++
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 66777665433 6899999999999976443 556667788888887 8999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 036449 164 QNVKAVFDAAIRVVL 178 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (197)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998763
No 32
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-36 Score=193.28 Aligned_cols=166 Identities=33% Similarity=0.649 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..|++++|.+.+||||++.++....|...+..|.+..+... +.-..+.+.+++|||.|+++|+.....++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 47999999999999999999999999999999998777554 44455779999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
||++|.+||..+ +.|...|+... .+.|+|+|+||||+..++. ++.+.++.+++++|. .|||+||+.+
T Consensus 101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~N 168 (193)
T KOG0093|consen 101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKEN 168 (193)
T ss_pred EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhccccc
Confidence 999999999999 89999999887 7999999999999988876 889999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCCch
Q 036449 164 QNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~~~~~~ 183 (197)
.|++++|+.++..+-+.+..
T Consensus 169 inVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccHHHHHHHHHHHHHHHhhh
Confidence 99999999999888766443
No 33
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=6.3e-35 Score=202.69 Aligned_cols=169 Identities=54% Similarity=0.959 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|+|||||+.++..+.+..++.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999999999998877777778888888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+...|+..+....++.|+++++||+|+....... ......+.+..+++..+++..+...|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 9999999998667888888766789999999999996432100 11112345777889999999988789999999999
Q ss_pred CHHHHHHHHHH
Q 036449 165 NVKAVFDAAIR 175 (197)
Q Consensus 165 ~i~~l~~~i~~ 175 (197)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998763
No 34
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.5e-35 Score=208.09 Aligned_cols=165 Identities=32% Similarity=0.594 Sum_probs=144.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..++|+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++.++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999998888888876443 455666777888999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++++++.+ ..|+..+....+..|+++|+||+|+.+... +..+++..+++..+. +++++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999998 789998888778899999999999976443 567778888888886 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
|.|++++|++|.+.+...
T Consensus 152 ~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 152 NINVEEMFNCITELVLRA 169 (199)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.4e-35 Score=201.16 Aligned_cols=158 Identities=35% Similarity=0.652 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
++|+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888886544 456777888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... .+.|+++|+||.|+...+. +..+++..+++.++. +|+++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 78988887766 3799999999999976543 667889999998887 89999999999
Q ss_pred CHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRV 176 (197)
Q Consensus 165 ~i~~l~~~i~~~ 176 (197)
|++++|.+|++.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 36
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.1e-35 Score=202.07 Aligned_cols=163 Identities=30% Similarity=0.628 Sum_probs=143.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999888888886544 4456678888899999999999999888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. ...+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 67988887765 5799999999999976443 566778888888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|+++.+.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 37
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.2e-34 Score=201.37 Aligned_cols=171 Identities=56% Similarity=1.016 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..++.++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc--ccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+...|...+....++.|+++|+||+|+.+.... .........++.+++..+++..+..+|+++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 999999999866888888776789999999999998653211 011222335677889999999997689999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+.+++.+
T Consensus 161 gi~~~f~~~~~~~ 173 (174)
T cd04135 161 GLKTVFDEAILAI 173 (174)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.3e-35 Score=204.77 Aligned_cols=164 Identities=37% Similarity=0.635 Sum_probs=141.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCccccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN----------GSTVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 72 (197)
.+.+||+++|++|||||||++++..+.+...+.+|.+..+. ..+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 35699999999999999999999999998888888764443 333332 4568899999999999999999
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.+++++|++++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++..
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~ 150 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKY 150 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHc
Confidence 999999999999999999999999 78988887654 6889999999999976543 5677889999999
Q ss_pred CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 151 GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+. +++++||++|.|++++|++|++.+.+
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 87 89999999999999999999987754
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=8.4e-35 Score=203.14 Aligned_cols=168 Identities=29% Similarity=0.567 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++.|..++..++.++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988899986544 456778888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+....+ ..| ++|+||+|+..... ........++++++++..+. +++++||++|.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999999 789888877653 456 68899999964210 00011224567788888887 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCc
Q 036449 165 NVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~~ 182 (197)
|++++|+++++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 153 NVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999998876543
No 40
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-36 Score=193.94 Aligned_cols=167 Identities=30% Similarity=0.553 Sum_probs=153.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.-+|++++|+.|+|||+|+.+|..++|.++...|.+..+ +..+.+.++.+++++|||.||++|++....|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 448999999999999999999999999999888887666 6778899999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++++|+.+ ..|+...+... |++-+++++||.|+.+.++ ++..++..|+++... .+.++||++
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T 155 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT 155 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence 9999999999999 79999999888 7888999999999988776 899999999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCch
Q 036449 163 QQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~~ 183 (197)
|+|+++.|-...+.+..+.+.
T Consensus 156 GeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILNKIES 176 (214)
T ss_pred cccHHHHHHHHHHHHHHHHhh
Confidence 999999999988887765443
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.4e-35 Score=201.91 Aligned_cols=159 Identities=43% Similarity=0.850 Sum_probs=147.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|++|||||||+++|.++.+...+.+|. .+.+...+..++..+.+++||++|++.|..++..++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999988 56667788888999999999999999999988899999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
++++++++.+ ..|+..+....+ +.|++++|||.|+.+.+. ++.++++.+++.++. +|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence 9999999999 699999999986 799999999999987444 788899999999995 999999999999
Q ss_pred HHHHHHHHHHHHc
Q 036449 166 VKAVFDAAIRVVL 178 (197)
Q Consensus 166 i~~l~~~i~~~~~ 178 (197)
+.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 42
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.7e-35 Score=209.47 Aligned_cols=170 Identities=28% Similarity=0.431 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+.. +.+|.+..+... .+ ..+.+.+||+||++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999875 456665433221 12 45788999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc---------ccCCCCCCcccHHHHHHHHHHhCC-----
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF---------FIDHPGAVPISTAQGEELRKLIGA----- 152 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----- 152 (197)
++++++|+.+...|........++.|+++|+||+|+.+.... .......+.+..++++.+++..+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999944444444333368999999999999652110 011112456888999999998772
Q ss_pred --------CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 153 --------PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 153 --------~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.+|+||||++|.||+++|..+++.+...
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 2799999999999999999999877654
No 43
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.3e-35 Score=208.66 Aligned_cols=163 Identities=28% Similarity=0.454 Sum_probs=141.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4568999999999999999999999999888888886443 445666777799999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++++++.+ ..|+..+....++.|+++||||+|+.... +..+++ .+++..+. +|+++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999998 78999998777889999999999996422 233444 67777776 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
|.|++++|.+|++.+...
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999988765
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=6.4e-35 Score=200.77 Aligned_cols=159 Identities=32% Similarity=0.600 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+++||+||+++|..++..++.++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 79999999999999999999999998888888876666777788888899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++++ ..|+..+.... ++.|+++|+||+|+.+... +...++..++...+. +++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04176 82 LVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSKT 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence 9999999998 67877777653 5899999999999965432 455667788888887 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|.++++.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998764
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-34 Score=200.06 Aligned_cols=161 Identities=35% Similarity=0.677 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888888876444 344556677789999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. ...+++.+++...+. +++++||+++.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 78988887766 5789999999999976443 556777888888888 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 036449 165 NVKAVFDAAIRVVLQ 179 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (197)
|++++|+++++.+.+
T Consensus 150 gv~~l~~~l~~~~~~ 164 (165)
T cd01865 150 NVKQVFERLVDIICD 164 (165)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987643
No 46
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8.7e-35 Score=200.52 Aligned_cols=158 Identities=28% Similarity=0.518 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.++....+......+...+.+.+||+||+++|..++..++..++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888876666666677778899999999999999888888999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 87 LISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++..++. +|+++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999998 67777666532 5799999999999966433 566777888888887 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRV 176 (197)
Q Consensus 163 ~~~i~~l~~~i~~~ 176 (197)
|.|++++|++|++.
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999864
No 47
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.2e-34 Score=199.47 Aligned_cols=161 Identities=35% Similarity=0.616 Sum_probs=140.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+++||+||++++..++..++.++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 35899999999999999999999998888888888777776777888888999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+. +++++||++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04145 81 FSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKD 148 (164)
T ss_pred EECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCC
Confidence 999999999998 67777766543 5899999999999965433 566677888888887 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRVV 177 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (197)
|.|++++|++|++.+
T Consensus 149 ~~~i~~l~~~l~~~~ 163 (164)
T cd04145 149 RLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998765
No 48
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=203.57 Aligned_cols=179 Identities=66% Similarity=1.100 Sum_probs=163.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+|++++|..++|||+|+..+..+.|+..|.||..+.+...+.++ ++.+.+.+|||.||++|+.+++..+.++|.|+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc--ccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+||++.+++|++.+...|+..+++.+|+.|+++||+|.||...... ...+.....+..++++.++++.|+..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999853321 12334456688999999999999889999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCc
Q 036449 161 KTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
++..|++++|+..+..+...++
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988765
No 49
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.5e-34 Score=203.48 Aligned_cols=168 Identities=43% Similarity=0.672 Sum_probs=133.2
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhhC-----CCCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCcccccc
Q 036449 6 FIKCVTVGDGAVGKTCLLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVNGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~-~~~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 69 (197)
.+||+++|.+|||||||+. ++..+ .+...+.||.+ +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 55543 34566778874 333322 25688899999999999975 3
Q ss_pred ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc---------CCCCCCcccH
Q 036449 70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI---------DHPGAVPIST 140 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~ 140 (197)
....+++++|++|+|||++++.+|+.+...|+..+....++.|+++||||+|+........ .....+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999985579998887777899999999999964210000 0011356889
Q ss_pred HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 141 AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
++++++++.+++ +|+||||++|.||+++|+.++++
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999998 99999999999999999999875
No 50
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=204.38 Aligned_cols=163 Identities=36% Similarity=0.678 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|||||||++++..+.+. ..+.++.+..+ ...+.+++..+.+++||+||++++...+..++..+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 35667765444 34567788889999999999999998888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
+|++++++++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..++..++. +|+++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 77888888776 4789999999999965443 556778888888887 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCC
Q 036449 164 QNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~~~~ 181 (197)
.|++++|.+|++.+....
T Consensus 149 ~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 149 LNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887763
No 51
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.1e-34 Score=199.82 Aligned_cols=160 Identities=34% Similarity=0.624 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++++..++..++..++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+ ..|...+.... .+.|+++|+||+|+.+.+. ...+++..+++..+. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999998 67777665543 4789999999999976443 556777888888886 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 036449 165 NVKAVFDAAIRVVL 178 (197)
Q Consensus 165 ~i~~l~~~i~~~~~ 178 (197)
|++++|++|++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 52
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.7e-34 Score=198.24 Aligned_cols=158 Identities=38% Similarity=0.644 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+++||+||++++..++..++.+++++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 79999999999999999999999998888888877777777788888889999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. ....++..+++..+. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (162)
T cd04138 82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTRQ 148 (162)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCCC
Confidence 9999999988 67777766543 589999999999996532 456677788888887 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+++++.+
T Consensus 149 gi~~l~~~l~~~~ 161 (162)
T cd04138 149 GVEEAFYTLVREI 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2e-34 Score=198.88 Aligned_cols=161 Identities=33% Similarity=0.683 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988877777775443 45566778888999999999999999988999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999999 67988887766 6899999999999865443 567788889988887 8999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 036449 164 QNVKAVFDAAIRVVL 178 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (197)
.|++++|..|++.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998875
No 54
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.7e-34 Score=197.27 Aligned_cols=159 Identities=29% Similarity=0.506 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|||||||++++..+.+...+.++... .+.....+++..+.+++||+||++.|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777643 33445667788899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
|++++.+++.+ ..|+..+....++.|+++|+||+|+.+. ..++...++...+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999998 7899999877778999999999998432 12344566676776 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 036449 166 VKAVFDAAIRVVLQP 180 (197)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (197)
++++|+.+++.+.++
T Consensus 146 v~~l~~~l~~~~~~~ 160 (161)
T cd04124 146 VVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987764
No 55
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=6.3e-34 Score=199.93 Aligned_cols=178 Identities=47% Similarity=0.771 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+....+..+.++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887777777766666666778878889999999999888777778899999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 166 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (197)
+++.++++.+...|+..+....++.|+++|+||+|+.+...........+.+..+++..+++..+..+|+++||++|.|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999996689999988778899999999999864321111111234456678889999998768999999999999
Q ss_pred HHHHHHHHHHHcCCCchh
Q 036449 167 KAVFDAAIRVVLQPPKTK 184 (197)
Q Consensus 167 ~~l~~~i~~~~~~~~~~~ 184 (197)
+++|+++.+.+...+++.
T Consensus 162 ~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 162 DDVFEAATRAALLVRKSE 179 (187)
T ss_pred HHHHHHHHHHHhcccCcc
Confidence 999999999887765443
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.7e-34 Score=196.90 Aligned_cols=160 Identities=31% Similarity=0.522 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999988888888885444 344556777899999999999999998888999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
|++++++++.+ ..|+..+....++.|+++|+||+|+.... .. .+..++++..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999998 78999998877789999999999997322 22 234456666555 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 036449 166 VKAVFDAAIRVVLQP 180 (197)
Q Consensus 166 i~~l~~~i~~~~~~~ 180 (197)
++++|++|++.+.+.
T Consensus 147 v~~~f~~l~~~~~~~ 161 (166)
T cd00877 147 FEKPFLWLARKLLGN 161 (166)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988764
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.4e-34 Score=197.73 Aligned_cols=158 Identities=32% Similarity=0.586 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+. +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999998888888886544 4455555 677899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|||++++++++.+ ..|+..+....++.|+++|+||+|+..... +..+++..+++.++. +++++||+++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999998 789888887778999999999999976543 567788889999988 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRV 176 (197)
Q Consensus 164 ~~i~~l~~~i~~~ 176 (197)
.|++++|++|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 58
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=6e-34 Score=201.11 Aligned_cols=166 Identities=33% Similarity=0.537 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|+|||||++++..+.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5777776555 45677888889999999999999999998899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
||++++.+++.+ ..|+..+....++.|+++|+||+|+..... ....+..+++..++...+. +++++||+++.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999998 789998887767899999999999854321 1223556677888888887 89999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 036449 165 NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~ 180 (197)
|++++|+++++.+...
T Consensus 153 gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 153 NVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988664
No 59
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-34 Score=197.40 Aligned_cols=162 Identities=31% Similarity=0.542 Sum_probs=140.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887777777543 34566777877889999999999999988899999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. ...+++..+++..+...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999998 78988887654 6899999999999976543 5667788898888876799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRVV 177 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (197)
|.|++++|+++.+.+
T Consensus 151 ~~~v~~~~~~l~~~l 165 (165)
T cd01864 151 SQNVEEAFLLMATEL 165 (165)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998753
No 60
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=7.1e-34 Score=200.74 Aligned_cols=179 Identities=23% Similarity=0.416 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccc--------cccCcCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 77 (197)
+||+++|.+|||||||++++..+.+...+.|+.+. .+...+.+++..+.+++|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888853 34455667888899999999997654311 2234788
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA 152 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (197)
+|++|+|||++++++++.+ ..|+..+... .+++|+++|+||+|+...+. +..++++.++. ..++
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999998 6777776654 25799999999999966433 45566666655 4466
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCCCchhh-----hhhccccccccC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK-----KKNKAQKACSIL 197 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~-----~~~~~~~~c~~~ 197 (197)
+|+++||++|.|++++|+.+++.+..+..... +..--...|+||
T Consensus 150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 89999999999999999999998887654432 233344567776
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5e-34 Score=197.05 Aligned_cols=160 Identities=24% Similarity=0.546 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886554 455667788899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 86 SLISKASYENVSKKWIPELKHYA------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... .+.++++.++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999998 78888887654 3689999999999964332 567777788888886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 036449 160 SKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~ 178 (197)
|+++.|++++|++|.+.+.
T Consensus 149 a~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 62
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.6e-33 Score=195.92 Aligned_cols=171 Identities=51% Similarity=0.931 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+.+|||||++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877766677788888999999999999999888889999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+...|...+....++.|+++|+||+|+.+..... ........+...++++++...+..++++|||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 9999999998667888888766789999999999986532210 01111234556788889988887689999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|.++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 63
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=8.8e-34 Score=196.20 Aligned_cols=162 Identities=32% Similarity=0.548 Sum_probs=138.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999999986554 4566778888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhh-CC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHY-AP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~-~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+ ..|+..+... .+ +.|+++|+||+|+.+... .....+++..+++.++. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 7898877554 34 577999999999865321 11345667788888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 036449 165 NVKAVFDAAIRVVLQ 179 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (197)
|++++|+.|++.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
No 64
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.1e-33 Score=193.34 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|||||||+.++..+.+...+.++ ...+...+.+++..+.+++||++|++.. .++.++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 58999999999999999999999887776555 3444567788888889999999999752 35678999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++|+.+ ..|+..+.... +++|+++|+||.|+.... .+.+..++++++++..+...|++|||+++.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999998 67888887665 679999999999985321 233777888899987753489999999999
Q ss_pred CHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRV 176 (197)
Q Consensus 165 ~i~~l~~~i~~~ 176 (197)
||+++|..+++.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 65
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=191.25 Aligned_cols=165 Identities=30% Similarity=0.608 Sum_probs=150.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
-.+||+++|..-+|||||+-++..++|+.....|.. ......+.+.+....+.||||+||++|..+-+.|++.++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 458999999999999999999999999998888874 4446777888888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++|++||+.+ ..|...++... ..+-++||+||+|+.+++. ++.+++..+++.-|+ .|+++||++
T Consensus 92 VyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk~ 159 (218)
T KOG0088|consen 92 VYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAKD 159 (218)
T ss_pred EEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccccc
Confidence 9999999999999 89999998877 5688899999999998887 899999999999999 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 036449 163 QQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~ 181 (197)
+.||.++|+.+.+...++.
T Consensus 160 N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 9999999999988766643
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.1e-33 Score=194.34 Aligned_cols=159 Identities=31% Similarity=0.595 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++.+..+ .....+++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998777777775433 445667777889999999999999988899999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|+++++++..+ ..|+..+.... ++.|+++++||.|+.+... ++.+++..+++..+. .++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 68888777655 7899999999999976443 677888889998886 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+++++.+
T Consensus 149 ~i~~~~~~~~~~~ 161 (161)
T cd04113 149 NVEEAFLKCARSI 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.7e-33 Score=194.97 Aligned_cols=163 Identities=36% Similarity=0.642 Sum_probs=139.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999998887777775443 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++|||++++++++.+ ..|...+.... ++.|+++|+||+|+... . +..++++++++..+..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-Q----------VSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-c----------cCHHHHHHHHHHCCCCeEE
Confidence 999999999999998 67877665432 36899999999998632 1 5677888898888865899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~ 177 (197)
++||++|.|+.++|+.+++.+
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.7e-34 Score=202.37 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+||+++|.+|||||||++++..+.+...+.+|.+.. +...+.+ ++..+.+++||+||++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999999888777777533 3444555 4667899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+ ..|+..+.... ...|+++|+||+|+..... +..+++..+++..+. +|+++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999999 67888877654 3578899999999976443 677888899999986 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
+|.|++++|++|++.+.+..
T Consensus 150 ~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 150 TGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999877653
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.8e-33 Score=194.50 Aligned_cols=163 Identities=28% Similarity=0.594 Sum_probs=141.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999988877777765444 4456677777899999999999999888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||.|+..... ++.+++..++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78988887655 7899999999999975433 567778888888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|.++.+.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 70
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1e-33 Score=202.78 Aligned_cols=163 Identities=30% Similarity=0.567 Sum_probs=143.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+++||+||++++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999998877778876544 5667788888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.++..++. +++++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~ 158 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE 158 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78988888766 5899999999999966543 667788888888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|+++++.+.+
T Consensus 159 g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 159 ATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 71
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2e-33 Score=193.66 Aligned_cols=161 Identities=34% Similarity=0.596 Sum_probs=139.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999988877777776443 5566777877899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++.+++.+ ..|+..+....+ +.|+++|+||.|+...+. ...++.+.++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 689888887764 699999999999976443 566777888887776 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRVV 177 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (197)
|.|++++|+++++.+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.2e-33 Score=194.39 Aligned_cols=161 Identities=30% Similarity=0.548 Sum_probs=139.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc-cccccCcCCCcEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i 82 (197)
+.++|+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++++. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 46899999999999999999999998887777777543 34566778888999999999999887 57788899999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++++++...+. +|+++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999998 78988887654 5799999999999976543 667788889888886 8999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q 036449 161 KT---QQNVKAVFDAAIRVV 177 (197)
Q Consensus 161 ~~---~~~i~~l~~~i~~~~ 177 (197)
++ +.+++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999999876
No 73
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=200.99 Aligned_cols=168 Identities=30% Similarity=0.581 Sum_probs=146.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|.....+||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++..+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777889999999999999999999999988877777775444 445677888889999999999999988888999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+.+.+. ++.+++.++++..+. +++++
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~ 148 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence 99999999999999998 67877776554 6899999999999976443 677888899998887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
||+++.|++++|.++++.+.+.
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888754
No 74
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2.7e-33 Score=193.59 Aligned_cols=162 Identities=32% Similarity=0.571 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+++||+||+++|..++..++..++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37899999999999999999999999888888887777777778888899999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|++++++++.. ..|...+.... ++.|+++++||.|+...+. ...+++..+++.++..+++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999998 67877776533 5899999999999965443 55667778888888448999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 036449 164 QNVKAVFDAAIRVVL 178 (197)
Q Consensus 164 ~~i~~l~~~i~~~~~ 178 (197)
.|++++|.++++.+.
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.2e-33 Score=198.03 Aligned_cols=155 Identities=28% Similarity=0.492 Sum_probs=134.8
Q ss_pred EcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc
Q 036449 12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (197)
Q Consensus 12 ~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (197)
+|.+|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888886444 55667788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449 91 ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 91 ~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 170 (197)
.+++.+ ..|+..+....+++|+++|+||+|+.... +..+. ..+++..++ .|++|||++|.||+++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999998 68999998877899999999999985421 23333 467777777 89999999999999999
Q ss_pred HHHHHHHcCC
Q 036449 171 DAAIRVVLQP 180 (197)
Q Consensus 171 ~~i~~~~~~~ 180 (197)
.+|++.+...
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3e-33 Score=203.23 Aligned_cols=163 Identities=28% Similarity=0.440 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.+|.++.+...+.+++..+.+++|||+|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888898887777777888888999999999999998888888899999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 87 LISKASYENVSKKWIPELKHY----------APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++++++|+.+ ..|...+... .++.|+++|+||+|+...+. +..+++.++........++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999998 6777776542 25799999999999975433 5666777766544333799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++||+++.|++++|++|++.+..+
T Consensus 150 evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999976544
No 77
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-34 Score=184.76 Aligned_cols=164 Identities=34% Similarity=0.599 Sum_probs=147.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
--+||+++|..|+|||+|+++|..+-|++....|++..+ -+++.+++..+++++|||.|+++|++....+++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 348999999999999999999999999999888887555 5678899999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++...+|+-+ -.|+..|+.+. .....|+|+||.|+.+.++ +....+++|++.... .|+++||++
T Consensus 86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsake 153 (213)
T KOG0095|consen 86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKE 153 (213)
T ss_pred EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccc
Confidence 9999999999998 79999999888 5677799999999987665 778888999988777 799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
-+|++.+|..++-.+...
T Consensus 154 a~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999998766543
No 78
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.9e-33 Score=193.83 Aligned_cols=159 Identities=31% Similarity=0.535 Sum_probs=136.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-ccccccCcCCCcEEEEEEe
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|++|+|||||++++..+.+...+.++....+.....+++..+.+++||+||++.+ ......+++++|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888888888886666667778888889999999999853 4455667889999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +|+++||+++
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999998 77888777653 4899999999999965443 667788889998887 8999999999
Q ss_pred -CCHHHHHHHHHHHHc
Q 036449 164 -QNVKAVFDAAIRVVL 178 (197)
Q Consensus 164 -~~i~~l~~~i~~~~~ 178 (197)
.|++++|..+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 599999999998764
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.6e-33 Score=192.47 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=137.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+.+||+++|.+|||||||++++..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999998 888898876554 4566788788899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
++|||++++.+++.+ ..|+..+... ++.|+++|+||+|+.+... ....+..++++.++...++++||+
T Consensus 82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999887 6777765322 4799999999999965332 223445677777877557999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|+.+++.+..
T Consensus 150 ~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 150 LGDSSNELFTKLATAAQY 167 (169)
T ss_pred cCccHHHHHHHHHHHhhC
Confidence 999999999999998764
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=8.9e-33 Score=190.27 Aligned_cols=159 Identities=31% Similarity=0.568 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+||+++|.+|||||||++++..+ .+..++.++.+..+ .....++ +..+.+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 67788888885444 3344443 56789999999999999888889999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++++++.+ ..|+..+....++.|+++|+||+|+.+... +...+++.++...+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999988 789888887767899999999999965443 455666677777776 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRVV 177 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (197)
+.|++++|+.+++.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999999875
No 81
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.2e-32 Score=189.47 Aligned_cols=161 Identities=38% Similarity=0.700 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||+||++.+...+..++..+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 6899999999999999999999888777767765443 445667777788999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... ...+.+..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 57988887766 7899999999999876433 566778888888887 79999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 036449 165 NVKAVFDAAIRVVLQ 179 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (197)
|++++|++|.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 82
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=2.3e-32 Score=189.42 Aligned_cols=169 Identities=65% Similarity=1.101 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||++++..+.+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999987777888877777777788888999999999999988888888999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc-CCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI-DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
+++++++......|+..+....++.|+++|+||+|+.+...... -......+..+++..++..++..+++++||++|.|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 99999999987789988888778899999999999976543100 00011234577888888888876899999999999
Q ss_pred HHHHHHHHHH
Q 036449 166 VKAVFDAAIR 175 (197)
Q Consensus 166 i~~l~~~i~~ 175 (197)
++++|++|++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 83
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.7e-32 Score=188.27 Aligned_cols=159 Identities=36% Similarity=0.613 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+++||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777677765 344556677787788999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... .+.|+++++||+|+.+... ...++...+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 68888776655 4799999999999964433 566777888888886 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+++.+.+
T Consensus 149 ~v~~l~~~i~~~l 161 (161)
T cd01861 149 NVKELFRKIASAL 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 84
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=1.2e-32 Score=192.44 Aligned_cols=177 Identities=33% Similarity=0.535 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|.+|+|||||++++....+...+.++....+......++..+.+++||+||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888878888876666777778778889999999999999888889999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
+++..+++.+ ..|+..+.... .+.|+++++||+|+...+. ...++...+++..+. +++++||+++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999998 55545554432 5789999999999965332 445566777777776 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449 165 NVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL 197 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
|+.++|.++.+.+....... ....+.+|.+|
T Consensus 150 gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~ 180 (180)
T cd04137 150 NVEEAFELLIEEIEKVENPL--DPGQKKKCSIM 180 (180)
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCCCCCCceeC
Confidence 99999999999887665443 23467789887
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.7e-32 Score=187.63 Aligned_cols=160 Identities=36% Similarity=0.647 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998776677775433 56677888889999999999999998888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
+|++++++++.+ ..|+..+.... ++.|+++++||+|+..... ...++...++...+. +++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78888887766 7899999999999875332 556777888888886 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRVV 177 (197)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (197)
.|+.++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 86
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=193.37 Aligned_cols=163 Identities=37% Similarity=0.615 Sum_probs=150.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.+||+++|.+|+|||+|..+|..+.|.+.|.||+++.+.....+++..+.+.|+||+|+++|..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHh-hhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELK-HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~-~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|+++++.||+.+ ..+...|. ... ..+|+++||||+|+...+. +..++++.++..+++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 66666663 233 4689999999999988665 899999999999999 699999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.+++++|..+++.+..
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998776
No 87
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=183.28 Aligned_cols=164 Identities=32% Similarity=0.548 Sum_probs=144.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..++..++|.+-+|||+|++.|..+++.+-..||.+. .+...+.. +|..+++++|||+||++|++....+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999999988899864 44444443 578899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC--CC-CCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA--PG-VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~-~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
+|||++|++||+.+ ..|+..-.... |. +.+.+||+|+|+...++ ++.++++.+++..|. .|+|+|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999999 78877666554 54 44579999999988776 999999999999999 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (197)
|++|.|+++.|..|.+.+...
T Consensus 155 ak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=4.8e-32 Score=187.94 Aligned_cols=164 Identities=32% Similarity=0.600 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++.+..+...+.++.+.. ......+++..+.+++||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998887777776543 3455677888889999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 86 SLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|++++++++.. ..|...+.... .+.|+++|+||+|+..... ...++...+.+..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999887 67776655443 2799999999999975332 45666777888887558999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++|.|++++|+++.+.+.+..
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 150 KEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999887653
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=4.2e-32 Score=194.93 Aligned_cols=160 Identities=26% Similarity=0.416 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcC-CCcEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 83 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~ 83 (197)
+||+++|.+|||||||++++..+.+. ..+.++.+ +.+...+.+++..+.+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66666664 55666777888889999999999982 23344556 8999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++...++ +|+++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999988 67888777654 5799999999999976543 667777888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|+++++.+...
T Consensus 147 ~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 147 LQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988643
No 90
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=193.35 Aligned_cols=165 Identities=33% Similarity=0.616 Sum_probs=138.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|||||||++++..+.+. .+.++.+..+ ...+.+++..+.+.+||+||++.|..++..+++++|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999988774 4566665443 4456677778899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+...|...+.... .+.|+++|+||+|+..... +..+++..++...+. +|+++||+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk 160 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 9999999999998666777666543 4689999999999976443 566777788888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.|++++|++|.+.+...+
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999886643
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=7.3e-32 Score=185.16 Aligned_cols=159 Identities=36% Similarity=0.667 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|+|||||++++..+.+...+.++.... ......+.+..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999998876666666433 3445666677788999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+..... ...++..++++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 67888887766 4789999999999975433 556677778888887 79999999999
Q ss_pred CHHHHHHHHHHHH
Q 036449 165 NVKAVFDAAIRVV 177 (197)
Q Consensus 165 ~i~~l~~~i~~~~ 177 (197)
|++++|+++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=7e-32 Score=185.67 Aligned_cols=160 Identities=36% Similarity=0.622 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++....+...+.++....+......++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999998888888877777777788888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++.++... ..|...+.... .+.|+++|+||+|+..... ....+...+...++. +++++||+++.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999988 55666555542 5899999999999965322 445666777788887 89999999999
Q ss_pred CHHHHHHHHHHHHc
Q 036449 165 NVKAVFDAAIRVVL 178 (197)
Q Consensus 165 ~i~~l~~~i~~~~~ 178 (197)
|++++|+++.+.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.7e-31 Score=183.39 Aligned_cols=157 Identities=32% Similarity=0.643 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999888776777775444 344556777789999999999999988888999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... ...++...++...++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999998 56888887765 589999999999997432 455677888888887 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRV 176 (197)
Q Consensus 164 ~~i~~l~~~i~~~ 176 (197)
.|++++++.+.+.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 94
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-31 Score=183.01 Aligned_cols=165 Identities=32% Similarity=0.589 Sum_probs=137.7
Q ss_pred CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC
Q 036449 1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (197)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 78 (197)
|++ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 665 5669999999999999999999998887766666664 33444566778788899999999999998888899999
Q ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 79 DVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+....+.+.... ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~ 148 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE 148 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence 999999999999999988 67888877665 4799999999999965443 455566677776665 8999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~ 177 (197)
+||++|.|++++|++|.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999765
No 95
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.6e-31 Score=182.64 Aligned_cols=164 Identities=29% Similarity=0.428 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...++++. ..+.....+.+..+.+++||+||++.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998876644433 3333444556677899999999998887777777899999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCC
Q 036449 87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~ 165 (197)
++++.+++.+...|+..+....++.|+++|+||+|+.+.... ....++...++..++ ..+++++||+++.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 999999999866788888876678999999999999764320 011233334444443 23799999999999
Q ss_pred HHHHHHHHHHHHcC
Q 036449 166 VKAVFDAAIRVVLQ 179 (197)
Q Consensus 166 i~~l~~~i~~~~~~ 179 (197)
++++|+.+.+.+.+
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988765
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=9.2e-32 Score=187.75 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=121.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+. .+.||.+..+. .+.. ..+.+++||+||++.++.+|..++.++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999887775 35677654432 2333 34789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ce
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 155 (197)
|||+++++++..+...+...+.... ++.|++|++||+|+.... ..+ ++.+..+.. .+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------------~~~---~~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAA---EITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------------CHH---HHHHHhCccccCCCceEE
Confidence 9999999999988444444443322 689999999999996532 222 233333331 35
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+++||++|+|+.++|++|++.+..+
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhhc
Confidence 6899999999999999999887653
No 97
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=184.10 Aligned_cols=163 Identities=37% Similarity=0.619 Sum_probs=143.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEE---------CCeEEEEEEEeCCCccccccccccCc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV---------NGSTVNLGLWDTAGQEDYNRLRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~D~~G~~~~~~~~~~~~ 75 (197)
-++.+.+|.+|+||||++.++..++|......|.+..+... +.+ .+..+.+++|||+||++|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 47889999999999999999999999999888887666443 222 23578999999999999999999999
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+.+=++++++|+++.+||..+ ..|+..++... .+.-+++++||+|+...+. ++.+++..++++++.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl- 156 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL- 156 (219)
T ss_pred HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence 999999999999999999999 89999998766 6888999999999988765 899999999999999
Q ss_pred ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
||||+||-+|.|+++..+.+...+.++
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 999999999999998888777665543
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=9.5e-32 Score=185.67 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=120.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|.+|||||||++++..+.+.. +.||.+..+. .... ..+.+++||+||++.++.++..++.++|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998877654 4566654432 2223 34789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-----hCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-----IGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (197)
|||++++.+++.+...|...+... .++.|+++|+||+|+.+. +..+++..+... .+. .+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~ 149 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNW-YVQP 149 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcE-EEEE
Confidence 999999999998854455555443 268999999999998642 234444444321 122 6899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~ 175 (197)
+||++|.|++++|++|.+
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 999999999999999865
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=3.7e-31 Score=181.29 Aligned_cols=158 Identities=37% Similarity=0.680 Sum_probs=136.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|++|||||||++++....+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888766666677777778999999999999888888899999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449 88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 165 (197)
++++++..+ ..|...+.... ++.|+++|+||+|+..... .+.+++..++..++. +++++||+++.|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999988 56666665554 4899999999999976443 567788888888886 899999999999
Q ss_pred HHHHHHHHHHHH
Q 036449 166 VKAVFDAAIRVV 177 (197)
Q Consensus 166 i~~l~~~i~~~~ 177 (197)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 100
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.8e-32 Score=172.34 Aligned_cols=165 Identities=30% Similarity=0.590 Sum_probs=150.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..++..++|.-|+|||+|+..|...+|-.+.+.|++..+ ...+.+.+..+.+++||+.|+++|+.....+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 4678999999999999999999999999998888887666 567888999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++.+.++..+ ..|+..-+... |+..+++++||.|+...++ +..+++.+|+.+.|. .|+++||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999999 78887776655 8999999999999988776 899999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|+++.|-.-.++++++
T Consensus 157 tg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 9999999998888877765
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=7.7e-31 Score=185.80 Aligned_cols=162 Identities=27% Similarity=0.443 Sum_probs=133.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||++++..+.+...+.++........+.+.+..+.+++||+||+..|..++..++..+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999888877887666666677788788999999999999988888899999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCCCceEEeccCCCC
Q 036449 88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGAPAYIECSSKTQQ 164 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~ 164 (197)
+++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... .+..++..+... ..+. +++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence 999999998 67777666654 4799999999999965211 133444444333 3444 79999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 036449 165 NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~ 180 (197)
|++++|+++++.+...
T Consensus 150 gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 150 NVLEVFKELLRQANLP 165 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999987643
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=3.6e-33 Score=176.56 Aligned_cols=160 Identities=33% Similarity=0.633 Sum_probs=142.2
Q ss_pred EEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 10 VTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 10 ~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+++|.+++|||+|+-++..+.|- .+..+|.+..+ ...+..++..+.+++|||.||++|++....+++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999988888774 44556666555 45577789999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449 88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 166 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 166 (197)
.+..||+.. +.|+..|.... ....+++++||+|+.+++. +..+++.++++.|+. ||+++||++|-|+
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999999 89999999887 5788999999999988765 778999999999999 9999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 036449 167 KAVFDAAIRVVLQPP 181 (197)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (197)
+..|-.|.+.+.+..
T Consensus 149 d~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLK 163 (192)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999998877653
No 103
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=1.2e-30 Score=178.28 Aligned_cols=157 Identities=41% Similarity=0.757 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887677765433 455666677789999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... ++.|+++++||+|+..... ...++...++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999998 67988888876 6899999999999963322 456777888888777 89999999999
Q ss_pred CHHHHHHHHHH
Q 036449 165 NVKAVFDAAIR 175 (197)
Q Consensus 165 ~i~~l~~~i~~ 175 (197)
|++++|++|.+
T Consensus 149 ~i~~~~~~i~~ 159 (159)
T cd00154 149 NVEELFQSLAE 159 (159)
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.98 E-value=7.8e-31 Score=181.44 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=122.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||++++....+.. +.+|.+..+. .... ..+.+++||+||++.+...+..++.++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887654 5666654432 2333 347889999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-----CCceEEecc
Q 036449 88 ISKASYENVSKKWIPELKH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-----APAYIECSS 160 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa 160 (197)
+++++++.+ ..|+..+.. .. .+.|+++|+||+|+... ++.++++.++...+ ...++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 555555543 22 56899999999999642 34555555553222 115789999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++|.|++++|++|.+.+....
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999998876654
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=5.5e-31 Score=184.33 Aligned_cols=170 Identities=21% Similarity=0.325 Sum_probs=127.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..++|+++|.+|||||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++.+..++..++.++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998887654 45554222 223333 345688999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH--HhC---CCce
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK--LIG---APAY 155 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~ 155 (197)
+|+|++++.+++.+ ..|+..+.... .+.|+++|+||+|+... ...++...+.. ... ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999998887 56666555432 47999999999998642 22333333322 111 1257
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCCchhhhhh
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKN 188 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 188 (197)
+++||+++.|++++|++|.+.+.+.++-.+.++
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~ 180 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK 180 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 899999999999999999999876655444333
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=9.6e-32 Score=185.01 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
.|+++|.+|||||||++++..+.+...+.||.+... ..++...+.+.+||+||++.+..++..+++++|++|+|||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 389999999999999999999888888888875432 23444568899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc----HHHHHHHHHHhCCCceEEeccCC-
Q 036449 88 ISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS----TAQGEELRKLIGAPAYIECSSKT- 162 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sa~~- 162 (197)
+++.++..+ ..|+..+....+++|+++|+||+|+..... +. ...+..++++.+. .++++||++
T Consensus 78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~ 145 (164)
T cd04162 78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDD 145 (164)
T ss_pred CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence 999999888 566666654447899999999999965432 21 1234556666666 789998888
Q ss_pred -----CCCHHHHHHHHHH
Q 036449 163 -----QQNVKAVFDAAIR 175 (197)
Q Consensus 163 -----~~~i~~l~~~i~~ 175 (197)
++|++++|+.++.
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999998874
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.2e-30 Score=181.32 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+. .+.||.+..+. .... ..+.+++||+||++.+..++..++.++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 45699999999999999999999877774 35677654432 2233 34789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (197)
|||++++++++.+...|...+... .++.|++||+||+|+.+.. ..++..... ..... .+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~ 153 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNW-YIQP 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcE-EEEE
Confidence 999999999998844444444433 2679999999999996432 112211111 11122 4678
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 036449 158 CSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+||++|.|++++|++|.+.+.
T Consensus 154 ~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eeCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987753
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.2e-31 Score=186.04 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=120.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.+||+++|++|||||||++++..+.+.. +.||.+..+. .... ..+.+++||+||++.+..++..++.++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456999999999999999999998877764 5666654433 2333 34789999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (197)
|||+++++++......+...+.... ++.|+++|+||.|+.+.. ..++..... ..... .+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~ 157 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEVTEKLGLHSVRQRNW-YIQG 157 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHHHHHhCCCcccCCcE-EEEe
Confidence 9999999999988444444444322 578999999999986432 112211111 11111 4668
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+||++|.|++++|++|.+.+.+.
T Consensus 158 ~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.1e-30 Score=178.82 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+.. +.||.+..+. .+.. ..+.+.+||+||++++...+..++.++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 589999999999999999998887764 5677654332 2333 34788999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----HhCCCceEEeccC
Q 036449 87 LISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----LIGAPAYIECSSK 161 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sa~ 161 (197)
++++.+++.+...|...+.... .+.|+++++||+|+..... ..+....+.. ..+. .++++||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----------~~~i~~~~~~~~~~~~~~-~~~~~Sak 144 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-----------AAEVTDKLGLHSLRNRNW-YIQATCAT 144 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-----------HHHHHHHhCccccCCCCE-EEEEeeCC
Confidence 9999999988444444444322 5789999999999954211 1121222211 1122 46799999
Q ss_pred CCCCHHHHHHHHHH
Q 036449 162 TQQNVKAVFDAAIR 175 (197)
Q Consensus 162 ~~~~i~~l~~~i~~ 175 (197)
+|.|++++|++|.+
T Consensus 145 ~g~gv~~~~~~l~~ 158 (159)
T cd04150 145 SGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999864
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=9.6e-30 Score=182.44 Aligned_cols=168 Identities=28% Similarity=0.493 Sum_probs=140.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|.+...+||+++|++|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3456779999999999999999999998888888888886544 334445778899999999999999888888899999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
++++|||++++.++..+ ..|+..+....++.|+++++||+|+.+.. ...+ ...+++..+. .++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~S 149 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDIS 149 (215)
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEe
Confidence 99999999999999998 68888887766789999999999985422 2222 2356666776 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCc
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
|+++.|++++|.+|++.+...+.
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999998876543
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.2e-29 Score=176.21 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=117.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|++|||||||++++....+ ..+.+|.+. ....+.+++ +.+.+||+||++.++.++..++.++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF-QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4568999999999999999999997754 344555542 223344443 778999999999988888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhh-h-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKH-Y-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~-~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||++++.++... ..|+..+.. . .++.|+++|+||+|+.+.. ..++...+.. ..+. +++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 153 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL------------SEEEIREALELDKISSHHW-RIQ 153 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC------------CHHHHHHHhCccccCCCce-EEE
Confidence 9999999999887 455554432 2 2689999999999996532 2333344332 2233 799
Q ss_pred EeccCCCCCHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~ 175 (197)
++||++|.|++++|+++++
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=9.6e-29 Score=174.32 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.++ +..+.+++||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888886444 3334442 567899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeeCCcccCCcccccCCCCCCcccH
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHY-------------------A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIST 140 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 140 (197)
+|+|||++++++++.+ ..|+..+... . +++|+++||||.|+.+++.. ......
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~~ 153 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLVL 153 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHHh
Confidence 9999999999999999 7898888653 1 47899999999999765420 001112
Q ss_pred HHHHHHHHHhCCCceEEeccCCCC
Q 036449 141 AQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
.....++++.+. +.++.++.+..
T Consensus 154 ~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 154 TARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHhhhHHHhcCC-ceEEEecCCcc
Confidence 234567888888 78888888654
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=5.4e-29 Score=172.98 Aligned_cols=155 Identities=20% Similarity=0.290 Sum_probs=117.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+.. +.++.+..+. ...++ .+.+.+||+||++.+...+..++..+|++++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 456899999999999999999999887765 4566554432 33344 3778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHH----HHhCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELR----KLIGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~ 157 (197)
|+|+++++++......+...+.... ++.|+++++||+|+... .+.++ ...+. ...+. ++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~ 155 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQG 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEe
Confidence 9999999998887444444444332 57999999999998542 11222 12221 12233 6899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~ 175 (197)
+||++|.|++++|++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999875
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=5.2e-29 Score=171.10 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+|+++|.+|||||||++++.... ....+.+|.+.... ... ...+.+++||+||++.+..++..++.++|++|+|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 35556677653322 222 234788999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH---HHHH--HhCCCceEE
Q 036449 87 LISKASYENVSKKWIPELKHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE---ELRK--LIGAPAYIE 157 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~ 157 (197)
++++.++... ..|+..+... .++.|+++|+||+|+.+... .++.. .+.. .... .+++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~------------~~~~~~~l~~~~~~~~~~-~~~~ 143 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDALT------------AVKITQLLGLENIKDKPW-HIFA 143 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCCC------------HHHHHHHhCCccccCceE-EEEE
Confidence 9999998877 5555555332 14799999999999965321 11111 1111 1122 5899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~ 175 (197)
+||++|.|++++|++|.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999865
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=4.2e-29 Score=172.37 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=117.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|.+|||||||++++.+. +...+.+|.+.. ...+..+ .+.+++||+||++.++.++..++.++|++|+|||.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 666677777643 2334444 47788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-CceEEeccCCC-
Q 036449 88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-PAYIECSSKTQ- 163 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~- 163 (197)
+++.+++.+ ..|+..+.... .+.|+++|+||+|+...... ...........+++..+. ..+++|||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~------~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLG------ADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH------HHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999988 56666665432 58999999999999764310 000011112233333332 25777999998
Q ss_pred -----CCHHHHHHHHHH
Q 036449 164 -----QNVKAVFDAAIR 175 (197)
Q Consensus 164 -----~~i~~l~~~i~~ 175 (197)
.|+.+.|+||..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999974
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=2.2e-29 Score=172.41 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+++|||||++++..+.+.. +.+|.+.... .... ..+.+++||+||++.+...+..++..++++|+|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998777654 3555543332 2223 347789999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHH----HHhCCCceEEeccC
Q 036449 88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELR----KLIGAPAYIECSSK 161 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~sa~ 161 (197)
+++.++......|...++... ++.|+++|+||+|+.+... ..+. ..+. ...+. +++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS------------EAEISEKLGLSELKDRTW-SIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC------------HHHHHHHhCccccCCCcE-EEEEeecc
Confidence 999888776445554544332 5799999999999964321 1111 1111 11122 69999999
Q ss_pred CCCCHHHHHHHHHH
Q 036449 162 TQQNVKAVFDAAIR 175 (197)
Q Consensus 162 ~~~~i~~l~~~i~~ 175 (197)
++.|++++|++|++
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999875
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=2.4e-28 Score=172.05 Aligned_cols=157 Identities=19% Similarity=0.291 Sum_probs=119.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+..+|+++|++|||||||++++..+.+. .+.+|.+... ..+.+++ +.+.+||+||++.+...+..++.+++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 46789999999999999999999987764 4555554332 3444555 678899999999888888889999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449 84 AFSLISKASYENVSKKWIPELKH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|+|+++..+++.. ..++..+.. .. .+.|+++++||+|+... +..++.+.+....
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence 9999999998877 444444433 22 57999999999999642 3344555444321
Q ss_pred ----CCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 151 ----GAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 151 ----~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
....+++|||++|.|++++|++|.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 112589999999999999999998753
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=8e-28 Score=166.96 Aligned_cols=159 Identities=24% Similarity=0.343 Sum_probs=122.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|..||||||+++++..+.... ..||.+... ..+...+ +.+.+||.+|+..++..|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4788999999999999999999998765443 455554332 3344555 67889999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----CCCceE
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-----GAPAYI 156 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 156 (197)
||+|.++.+.+.+....+...+.... .+.|++|++||+|+.+.. +.++........ ....++
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------------~~~~i~~~l~l~~l~~~~~~~v~ 154 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------------SEEEIKEYLGLEKLKNKRPWSVF 154 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------------THHHHHHHTTGGGTTSSSCEEEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------------hhhHHHhhhhhhhcccCCceEEE
Confidence 99999999999988555555555433 689999999999986532 233333222111 112578
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.|||.+|+|+.+.++||.+++
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHhcC
Confidence 899999999999999999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=4e-28 Score=166.41 Aligned_cols=152 Identities=21% Similarity=0.287 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|++|||||||++++..+.+... .+|.+..+ ..+.. +..+.+.+||+||++.+...+..++..+|++++|+|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999887643 45554332 22223 2457899999999999988888899999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH------HHHHHhCCCceEEecc
Q 036449 88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE------ELRKLIGAPAYIECSS 160 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~sa 160 (197)
+++.++......+...+.... .+.|+++|+||+|+.... ..++.. .+....+. +++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~Sa 144 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPCSA 144 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence 999998888433344444322 589999999999995421 112211 11111222 6899999
Q ss_pred CCCCCHHHHHHHHHH
Q 036449 161 KTQQNVKAVFDAAIR 175 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~ 175 (197)
++|.|++++|++|.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999865
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=6.1e-28 Score=166.62 Aligned_cols=151 Identities=23% Similarity=0.322 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF------PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+|+++|++|+|||||++++..... ...+.+|..... ..+.+++ ..+.+||+||++.+..++..++..+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999876432 223344443333 2344443 6788999999999998888899999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-------hCC
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-------IGA 152 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 152 (197)
++|+|.++++++... ..|+..+... . ++.|+++++||+|+.... ..++...+... .+.
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL------------SVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC------------CHHHHHHHhccccccccCCce
Confidence 999999999888887 4554444332 2 589999999999985532 22333333222 223
Q ss_pred CceEEeccCCCCCHHHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
+++++||++|.|+++++++|..
T Consensus 145 -~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 -LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred -EEEEeeCCCCcCHHHHHHHHhc
Confidence 7999999999999999999864
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=1.5e-27 Score=176.11 Aligned_cols=148 Identities=20% Similarity=0.313 Sum_probs=119.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-------------GSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~G~~~~~ 68 (197)
+...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.++|||++|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34669999999999999999999999999888888886554 3444443 256889999999999999
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCcccCCcccccCCCCC
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-------------PGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~~~ivv~nK~D~~~~~~~~~~~~~~ 135 (197)
.++..++++++++|+|||++++++++.+ ..|+..+.... .++|++||+||+|+...+.. ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~ 172 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGS 172 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----ccc
Confidence 9999999999999999999999999999 78999888652 25899999999999653210 000
Q ss_pred CcccHHHHHHHHHHhCCCce
Q 036449 136 VPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+..+++++++.+.++.+.
T Consensus 173 s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 173 SGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred ccccHHHHHHHHHHcCCCcc
Confidence 11357899999999886543
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.4e-27 Score=167.15 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=116.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++..+.+.. +.+|..... ..+.+++ +.+.+||+||++.++..+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 677999999999999999999999876643 344443222 2233444 678899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----------HhC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----------LIG 151 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 151 (197)
|+|++++.++......+...+.... ++.|+++|+||+|+... ++.++..+... ..+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence 9999999998887433333333222 58999999999998642 22333322211 112
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHH
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
...+++|||+++.|++++++||.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 3358999999999999999999865
No 123
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=2.8e-27 Score=163.99 Aligned_cols=143 Identities=29% Similarity=0.500 Sum_probs=122.4
Q ss_pred CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhh
Q 036449 29 NTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY 107 (197)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~ 107 (197)
+.|.+.+.+|.+..+ ...+.+++..+.+.||||||++.+..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 457788889987444 56678888899999999999999999999999999999999999999999998 6888877655
Q ss_pred C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCch
Q 036449 108 A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 108 ~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
. ++.|+++|+||+|+.+.+. +..+++..++..++. .|+++||++|.|++++|++|++.+....+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 4 6899999999999965433 667788888888887 799999999999999999999998765433
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.3e-27 Score=163.62 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||++++.++.+. .+.++.+.... ...+. .+.+.+||+||++.+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999999988743 34455543322 23333 36788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceEEecc
Q 036449 88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYIECSS 160 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa 160 (197)
+++.++... ..|+..+.... ++.|+++|+||+|+..... .++...... .... +++++||
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGALS------------VSELIEKLGLEKILGRRW-HIQPCSA 142 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCccccC------------HHHHHHhhChhhccCCcE-EEEEeeC
Confidence 999999988 45554444332 5899999999999965331 222222211 1223 7999999
Q ss_pred CCCCCHHHHHHHHHH
Q 036449 161 KTQQNVKAVFDAAIR 175 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~ 175 (197)
++|.|++++|++|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=2.1e-26 Score=159.11 Aligned_cols=156 Identities=23% Similarity=0.219 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc---------cCcC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP---------LSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------~~~~ 76 (197)
.+|+++|.+|+|||||++++....+... +..++.......... ..+.+++|||||+........ ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 3799999999999999999998876422 222222222222222 347889999999843111000 0112
Q ss_pred CCcEEEEEEeCCCchhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 77 GADVFILAFSLISKASY--ENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.+|++++|+|+++..++ +.. ..|+..+....++.|+++|+||+|+..... .. ...++....+. +
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~ 144 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-E 144 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-c
Confidence 36899999999987653 444 567777766556899999999999965432 11 13445544444 8
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHc
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++++||++|.|++++|+++.+.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=3.8e-27 Score=160.96 Aligned_cols=151 Identities=23% Similarity=0.341 Sum_probs=115.4
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
|+++|++|+|||||++++.+..+...+.++.+..+.. ...++ +.+.+||+||++.+...+..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7999999999999999999999988888877644432 33333 77899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HH----HHHhCCCceEEeccCC
Q 036449 89 SKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-EL----RKLIGAPAYIECSSKT 162 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~sa~~ 162 (197)
+..++......+...+.... ++.|+++|+||+|+.+... ..+.. .+ ....+. +++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 145 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREV-SCYSISCKE 145 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCce-EEEEEEecc
Confidence 99888877333344333322 5789999999999865321 11111 11 111223 689999999
Q ss_pred CCCHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIR 175 (197)
Q Consensus 163 ~~~i~~l~~~i~~ 175 (197)
+.|+++++++|++
T Consensus 146 ~~gi~~l~~~l~~ 158 (159)
T cd04159 146 KTNIDIVLDWLIK 158 (159)
T ss_pred CCChHHHHHHHhh
Confidence 9999999999875
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=1.7e-26 Score=161.13 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCce------eeee-eE--EEEE---CCeEEEEEEEeCCCccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT-------FPTDYVPTV------FDNF-SA--NVVV---NGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~~~------~~~~-~~--~~~~---~~~~~~~~i~D~~G~~~~~ 68 (197)
+|+++|.+++|||||++++.... +...+.++. +..+ .. ...+ ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 212222221 1111 11 1122 5567889999999999999
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..+..++..+|++|+|+|++++.+.+.. ..|.... . .+.|+++|+||+|+.+.. ......++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 8888899999999999999998776665 4443322 2 368999999999985422 1223345566
Q ss_pred HhCCC--ceEEeccCCCCCHHHHHHHHHHHH
Q 036449 149 LIGAP--AYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 149 ~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.++.. .++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 66652 489999999999999999998876
No 128
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-26 Score=154.36 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=129.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
...+..+|+++|-.++||||++.++..+..... .||.+.... .+.+. .+.+++||.+||+.++..|..|+.+.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 456789999999999999999999998887766 777764443 33344 48899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-ceEEec
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-AYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s 159 (197)
|||+|.+|++.+.++...+...+.... .+.|+++++||.|+...-. . ........+..-.+.. .+..|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-------~--~ei~~~L~l~~l~~~~w~iq~~~ 159 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-------A--AEITNKLGLHSLRSRNWHIQSTC 159 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC-------H--HHHHhHhhhhccCCCCcEEeecc
Confidence 999999999999999777777777665 6899999999999976432 0 1111122222222222 345599
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (197)
|.+|+|+.+.++|+.+.+...
T Consensus 160 a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 160 AISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccccHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=5.2e-26 Score=157.86 Aligned_cols=153 Identities=22% Similarity=0.337 Sum_probs=112.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+..++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999999876532 34444322 22334444 567899999998888888888999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ce
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 155 (197)
|+|+++..++......+...+.... .+.|+++++||+|+..... . ..+.+..+.. ++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~---~~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP------------A---EEIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC------------H---HHHHHHcCCcccCCCeEEE
Confidence 9999999888877334444433322 4799999999999854321 1 1222222221 36
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 036449 156 IECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~ 175 (197)
+++||++|.|++++|++|.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 130
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-28 Score=162.94 Aligned_cols=168 Identities=32% Similarity=0.503 Sum_probs=151.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+|++++|..++||||+++++..+-|...+..+++..+ ...+.+.+..+.+.+||++|+++|+.....+++++++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 4569999999999999999999999999999998886554 455666667778889999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+||+.+|..||+.. ..|...+......+|.++|-||+|+.+... ++..++..+++.++. .++.+|++.
T Consensus 98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvke 165 (246)
T KOG4252|consen 98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKE 165 (246)
T ss_pred EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhh
Confidence 99999999999998 899999999988999999999999988765 788899999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCch
Q 036449 163 QQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~~ 183 (197)
.-|+..+|..|+..+.+...+
T Consensus 166 d~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999887765443
No 131
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=1.3e-25 Score=147.02 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=126.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|..|+||||++++|.+.. .+...||.+... .+..+++ +.+++||.+||..+++.|..|+...|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 468999999999999999999999876 333455554332 2333444 889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccH-HHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIST-AQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|+|.+|+..+++....+...+.... .+.|+++++||.|+...-. ...+.. .....+++.... +.+.||+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~~ 161 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSAV 161 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEecc
Confidence 9999999999987566655555444 6899999999999974321 000111 223445555566 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
+|+++.+-++|+...+..
T Consensus 162 tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 162 TGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999987765
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=3e-25 Score=159.66 Aligned_cols=180 Identities=34% Similarity=0.544 Sum_probs=138.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEE-ECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|++|+|||||++++..+.+...+.++.+..+..... ..+..+.+.+||++|+++++.++..+..+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999999998766654443 34447889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCC--CcccHHHHHHHHHHh--CCCceEEe
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQGEELRKLI--GAPAYIEC 158 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~ 158 (197)
+||.++..++.+....|...+.... .+.|+++++||+|+.........-... .....+......... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999998888777799999999887 479999999999998764211000000 112222222222222 22248999
Q ss_pred ccC--CCCCHHHHHHHHHHHHcCCCchh
Q 036449 159 SSK--TQQNVKAVFDAAIRVVLQPPKTK 184 (197)
Q Consensus 159 sa~--~~~~i~~l~~~i~~~~~~~~~~~ 184 (197)
|++ ++.++.++|..+.+.+.......
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 999 99999999999999987654433
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=3.4e-25 Score=151.02 Aligned_cols=157 Identities=36% Similarity=0.525 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+.....+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998887666666664444 33456677668899999999999988888888899999999
Q ss_pred EeCCCc-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISK-ASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|+... .++......|...+..... +.|+++++||+|+.... ........+ ...+..+++++||++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~-~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LKTHVAFLF-AKLNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hhHHHHHHH-hhccCCceEEeecCC
Confidence 999887 7777664466666666554 89999999999996542 122333333 334444799999999
Q ss_pred CCCHHHHHHHHH
Q 036449 163 QQNVKAVFDAAI 174 (197)
Q Consensus 163 ~~~i~~l~~~i~ 174 (197)
+.|+.++|++|.
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999999863
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.1e-25 Score=154.37 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccC---cCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~~ 79 (197)
+|+++|.+|+|||||++++.+.... ..+..++.......+.+++ ...+.+|||||+.+ +..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999865432 1112222111111223333 24688999999642 11222222 34599
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCc
Q 036449 80 VFILAFSLISK-ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPA 154 (197)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (197)
++++|+|++++ ++++.+ ..|.+.+.... .+.|+++|+||+|+.+... . .+....+.... +. +
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~-~~~~~~~~~~~~~~-~ 147 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE----------L-FELLKELLKELWGK-P 147 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh----------h-HHHHHHHHhhCCCC-C
Confidence 99999999999 788887 68887776654 3689999999999965432 2 23334444443 44 7
Q ss_pred eEEeccCCCCCHHHHHHHHHHHH
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
++++||+++.|++++|+++.+.+
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998753
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=5.8e-26 Score=152.73 Aligned_cols=135 Identities=27% Similarity=0.289 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-----ccccccccCcCCCcEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 82 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i 82 (197)
||+++|.+|||||||++++.+..+. +.+|.. ..+.. .+||+||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 7999999999999999999987652 233321 11111 589999973 2333333 478999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++.++... .|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 99999999987653 444322 24999999999986422 3455667777777765799999999
Q ss_pred CCCHHHHHHHHH
Q 036449 163 QQNVKAVFDAAI 174 (197)
Q Consensus 163 ~~~i~~l~~~i~ 174 (197)
+.|++++|+++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=8.2e-25 Score=150.40 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.|+++|.+|+|||||++++.+.. +..++.++. .+.......+.+ ...+++|||||+++|......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 468999999999999999998632 222222222 111112233331 357889999999988766666788999999
Q ss_pred EEEeCCCc---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH---hCCCceE
Q 036449 83 LAFSLISK---ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL---IGAPAYI 156 (197)
Q Consensus 83 ~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 156 (197)
+|+|+++. ++.+.+ ..+... ...|+++++||+|+.+... ......+..+..+. .+. +++
T Consensus 80 ~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~ 144 (164)
T cd04171 80 LVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIF 144 (164)
T ss_pred EEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEE
Confidence 99999873 333222 222222 1249999999999965321 00112233333333 234 899
Q ss_pred EeccCCCCCHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~ 175 (197)
++||+++.|++++++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998764
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=8.2e-25 Score=155.72 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=108.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 73 (197)
+..++|+++|++|||||||++++.+..+.. ....++.......+.+++. ..+.+||+||..+. ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 446899999999999999999999876432 2222222222223334332 36789999997321 1111 1
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... . .......+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~ 180 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP 180 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC
Confidence 25679999999999999888776 56667666544 4789999999999965432 1 133344444
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
+++++||+++.|+++++++|.+.+
T Consensus 181 -~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 -DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 799999999999999999998754
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.3e-24 Score=163.78 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-------cccccccCcCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-------YNRLRPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 78 (197)
-.|.++|.++||||||++++..... ...++.|+.......+.+. ....+.+||+||..+ +...+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4599999999999999999987543 3445555543333334442 124578999999632 111222345679
Q ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 79 DVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++++|+|+++.++++.. ..|...+.... .+.|+++|+||+|+.+... ...+....+....+. ++
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV 305 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence 999999999988888887 78888887654 3789999999999965432 223334444455555 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+++||+++.|+++++++|.+.+...
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=2.3e-24 Score=163.50 Aligned_cols=162 Identities=16% Similarity=0.240 Sum_probs=112.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccc------
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLR------ 71 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~------ 71 (197)
|++.+.++|+++|.+|||||||+++|.+..+.. ....|+.......+..++ .++.+|||||... +..+.
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 345677899999999999999999999887642 222333333444455555 4678999999843 22221
Q ss_pred -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
...+.++|++++|+|.++ ++......|+..+... +.|.++|+||+|+... ...++.++....
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~ 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence 124678999999999765 3444434566666544 5688899999998532 123344444444
Q ss_pred C-CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 151 G-APAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 151 ~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+ ...++++||++|.|++++|++|.+.+...+
T Consensus 188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 188 HPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred CCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 3 237899999999999999999999887654
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=3e-24 Score=148.19 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.|+++|.+|+|||||++++....+...+.++..... ......+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998877655433332222 1222222 13467889999999988888888889999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----Hh-CCCceEEecc
Q 036449 86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----LI-GAPAYIECSS 160 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~sa 160 (197)
|+++....+.. ..+..+.. .+.|+++|+||+|+..... .........+.. .. ...+++++||
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence 99986432222 22233333 3789999999999864321 000111111111 11 1237999999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 036449 161 KTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~ 178 (197)
+++.|+++++++|.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999988654
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=3.9e-24 Score=158.08 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-c-------ccccCcCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG 77 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~-------~~~~~~~~ 77 (197)
+|+++|.+|||||||+|++.+..+. ...+.|+..........++ .++.+|||||..... . .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999987653 3334455443332222333 468899999975421 1 12345788
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|+++..+.+ ..+...+... +.|+++|+||+|+.+.. ...+....+....+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence 99999999999876654 3444555443 78999999999996422 12234445555555547999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+||++|.|+++++++|.+.+...+
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999886654
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=8.5e-24 Score=143.00 Aligned_cols=152 Identities=42% Similarity=0.757 Sum_probs=115.4
Q ss_pred EEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC
Q 036449 11 TVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (197)
Q Consensus 11 v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (197)
++|++|+|||||++++..... .....++.................+.+||+||+..+...+...+..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 4555555544445555555667889999999998888777778899999999999999
Q ss_pred chhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHHHHhCCCceEEeccCCCCCH
Q 036449 90 KASYENVSKKW--IPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELRKLIGAPAYIECSSKTQQNV 166 (197)
Q Consensus 90 ~~s~~~~~~~~--~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sa~~~~~i 166 (197)
+.+.... ..| .........+.|+++++||+|+..... ..... ........+ .+++++|+.++.|+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence 9988887 444 222333336899999999999976432 11121 233444444 48999999999999
Q ss_pred HHHHHHHH
Q 036449 167 KAVFDAAI 174 (197)
Q Consensus 167 ~~l~~~i~ 174 (197)
.+++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999986
No 143
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-23 Score=135.44 Aligned_cols=167 Identities=24% Similarity=0.336 Sum_probs=141.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc-ccccccCcCCCcE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~ 80 (197)
+..||+|+|..++|||+++..+..+.. ..++.+|..+.|...+..+ +-.-.+.++||.|.... ..+-.+++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 568999999999999999999886543 4567888888887776654 44456889999998777 4566778999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++||+..|++||+.+ ..+...|.... ..+|+++++||+|+.+.+. ++.+.++.|++.-.. ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999998 67777777655 4799999999999977654 888999999999988 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCch
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
++.+...+-+.|..+...+.+...+
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCccc
Confidence 9999999999999999998887554
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=6.5e-24 Score=144.85 Aligned_cols=147 Identities=21% Similarity=0.217 Sum_probs=105.2
Q ss_pred EEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccCcCCCc
Q 036449 10 VTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (197)
Q Consensus 10 ~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~ 79 (197)
+++|.+|+|||||++++.... +.....+++..........++ ..+.+|||||+..+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 334445555444444455555 5678999999877543 2334577899
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
++++|+|..++.+.... .+...+... +.|+++|+||+|+.+... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999876554433 334444444 699999999999965432 1 2223345555789999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 036449 160 SKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~ 177 (197)
++++.|++++|+++++.+
T Consensus 140 a~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 140 AEHGRGIGDLLDAILELL 157 (157)
T ss_pred cccCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 145
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=2.4e-24 Score=140.57 Aligned_cols=114 Identities=33% Similarity=0.550 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
||+|+|++|||||||+++|.+..+.. .+.++....+ ............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 1222222222 33455666666799999999998888877779999999999
Q ss_pred EeCCCchhHHHHHHH--HHHHHhhhCCCCCEEEEeeCCc
Q 036449 85 FSLISKASYENVSKK--WIPELKHYAPGVPIILVGTKLD 121 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~--~~~~i~~~~~~~~~ivv~nK~D 121 (197)
||++++++++.+... |+..+....+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999987333 5777776667899999999998
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.5e-23 Score=143.23 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=106.2
Q ss_pred EEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccCc--CCCcEE
Q 036449 11 TVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~ 81 (197)
++|.+|+|||||++++.+..+.. .+..++.......+.+++ ..+.+|||||+..+... +..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999998876433 333334444445555665 46789999999776542 33444 489999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
++|+|.++++... .+...+... +.|+++|+||+|+..... .. .....++...+. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865432 233333333 789999999999965432 22 223466677777 89999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 036449 162 TQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~ 178 (197)
++.|++++++++.+.+.
T Consensus 141 ~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 141 KGEGIDELKDAIAELAE 157 (158)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999988643
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=152.61 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=102.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG-----------QEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~ 72 (197)
...++|+++|.+|+|||||++++.+..+.....+.... ......+. .+.+||||| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 35689999999999999999999987765444443321 12222222 478999999 455555544
Q ss_pred cCc----CCCcEEEEEEeCCCchhHHH---------HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449 73 LSY----RGADVFILAFSLISKASYEN---------VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS 139 (197)
Q Consensus 73 ~~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 139 (197)
.++ ..++++++|+|.++...+.. ....+...+.. .++|+++|+||+|+.+..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------- 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------- 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence 443 34578888888765432200 00122333333 379999999999985421
Q ss_pred HHHHHHHHHHhCC--------CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 140 TAQGEELRKLIGA--------PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 140 ~~~~~~~~~~~~~--------~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.+...++++..+. .+++++||++| |++++|++|.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 2334455555553 14799999999 9999999999886543
No 148
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=139.21 Aligned_cols=155 Identities=23% Similarity=0.331 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+.+.++|..++|||||++.+..+.+.+...||.+..... +....+.+.+||.||+++|+++|+.|.+.+++++||+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 4789999999999999999999988888877777654432 3334578889999999999999999999999999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ceEE
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AYIE 157 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 157 (197)
|+.+++.+.....++...+.... .++|++++|||.|+...-. . ..+..++|.. -+|-
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS 161 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence 99999998888666666666555 6899999999999976422 1 2333334332 4688
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 036449 158 CSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+|+++..|++.+.+||++.-.
T Consensus 162 iScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhh
Confidence 999999999999999998654
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1e-23 Score=166.77 Aligned_cols=161 Identities=20% Similarity=0.204 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLR- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 71 (197)
..++|+++|.+++|||||++++++... .....+++.+.....+.+++.. +.+|||||.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 3445555555555566667644 5699999953 222222
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
..++..+|++++|+|++++.++++. .++..+... +.|+++|+||+|+.+... ......+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2356889999999999999888876 344544443 799999999999964221 0011112222112223
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..+++++||++|.|++++|+.+.+.+..
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999987654
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=3e-23 Score=161.88 Aligned_cols=151 Identities=24% Similarity=0.245 Sum_probs=114.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 74 (197)
..++|+++|.+|+|||||++++.+.. +...+++|+.+.....+.+++ ..+.+|||||+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999999864 456667777666666777776 45679999998654432 2346
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+.++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....+++..+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 7899999999999998876653 5554443 37899999999999532 11234555666 7
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++++||++ .|++++|+.+.+.+.+.
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 89999998 68999999988877553
No 151
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.7e-24 Score=134.82 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=126.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|..++||||++.++..+.... ..||.+-.. ..+++ +.+.+++||.+|++..+.+|.+|+....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnv-etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeE-EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 567999999999999999999998876543 355554332 23334 44889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (197)
|+|..+....+++..++...+.... .+.|++|.+||.|+..... ..+.+.+. +..+. -..+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------------pqei~d~leLe~~r~~~W-~vqp 157 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------------PQEIQDKLELERIRDRNW-YVQP 157 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------------HHHHHHHhccccccCCcc-Eeec
Confidence 9999999999999888888888776 7899999999999976532 33333222 22222 3567
Q ss_pred eccCCCCCHHHHHHHHHHHHcC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.+|+++.+-|.|+.+.+..
T Consensus 158 ~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred cccccchhHHHHHHHHHhhccC
Confidence 9999999999999999987653
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.8e-23 Score=146.02 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCcccccccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS--NTFPTDYV------------PTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLR 71 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 71 (197)
-+|+++|.+++|||||++++.. +.+...+. .+.+.. ......+....+.+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 55544321 111111 11222333345788999999999999988
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH--
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-- 149 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (197)
..++.++|++++|+|+++... ... ..++..+... ++|+++|+||+|+..... ....++...+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 899999999999999987532 222 3334443333 789999999999965321 0122334444322
Q ss_pred -----hCCCceEEeccCCCCCHHH
Q 036449 150 -----IGAPAYIECSSKTQQNVKA 168 (197)
Q Consensus 150 -----~~~~~~~~~sa~~~~~i~~ 168 (197)
.+. +++++||++|.|+.+
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred CccccCcc-CEEEeehhccccccc
Confidence 244 799999999977633
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=3.7e-23 Score=157.18 Aligned_cols=152 Identities=22% Similarity=0.247 Sum_probs=108.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 74 (197)
..++|+++|.+|+|||||++++.+.... .+...++.+.....+.+.+ ...+.+|||||.. .|.+.+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987643 3444445444555555632 2467899999972 222222 13
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+... + ..+. . +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence 6789999999999999887776 55655555543 4789999999999954221 1 1111 1 223
Q ss_pred ceEEeccCCCCCHHHHHHHHHHH
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
+++++||++|.|+++++++|.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.3e-23 Score=163.91 Aligned_cols=154 Identities=20% Similarity=0.216 Sum_probs=110.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 74 (197)
...+|+++|.+|||||||++++.+... ......++.+.......+.+ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 347899999999999999999998754 23333333444444455555 3577999999763 22334556
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++|+|+|++++.+... ..+...++.. +.|+++|+||+|+.... .+....+ ..+...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~ 175 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGE 175 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence 789999999999999877654 3555656544 79999999999985421 1122222 234434
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+++||++|.|++++|++|++.+..
T Consensus 176 ~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 PHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred eEEEEcCCCCCcHHHHHHHHhhccc
Confidence 6799999999999999999998865
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=5.6e-23 Score=154.91 Aligned_cols=157 Identities=21% Similarity=0.203 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----ccccc---CcCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLRPL---SYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~~ 78 (197)
-.|+++|.++||||||++++..... ...++.|+.......+.+++ ...+++||+||..+.. .+... .+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4699999999999999999997643 33444444322222333433 3567899999974321 12222 34569
Q ss_pred cEEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 79 DVFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++++|+|+++. .+++.. ..|...+.... .+.|+++|+||+|+.+.. ...+..+.+++..+.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALGK 304 (329)
T ss_pred CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcCC
Confidence 999999999986 566666 67777666543 478999999999996532 123444556666665
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
+++++||+++.|+++++++|.+.+
T Consensus 305 -~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 305 -PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -cEEEEEccCCcCHHHHHHHHHHHh
Confidence 899999999999999999998765
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=1.1e-22 Score=138.65 Aligned_cols=145 Identities=26% Similarity=0.329 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccCcC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 76 (197)
++|+++|++|+|||||++++..... .....++...........++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998764 23334444333344444444 56789999997654321 123567
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+..... . ....... +++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~~-~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAGK-PII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCCC-ceE
Confidence 89999999999998877765 32222 34799999999999976432 1 2233333 899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~ 177 (197)
++||+++.|+++++++|.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999998754
No 157
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.1e-23 Score=141.36 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccC--cCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLS--YRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~--~~~ 77 (197)
++|+++|.|++|||||+|++.+... ..+++.++.+.....+.+.+ ..+.++|+||...+.. ....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998764 35566777666666677777 5566999999543321 11222 357
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.|++|.|+|+++.+.-. .+...+... +.|+++++||+|...... . ......+++..++ ++++
T Consensus 79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~-~id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------I-EIDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------E-EE-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------C-EECHHHHHHHhCC-CEEE
Confidence 99999999998754322 344455555 799999999999977553 2 2245678888998 8999
Q ss_pred eccCCCCCHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAA 173 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i 173 (197)
+||+++.|++++++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=4.7e-23 Score=143.23 Aligned_cols=152 Identities=26% Similarity=0.288 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccCcCCCcEE
Q 036449 11 TVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~~~~ 81 (197)
++|++|||||||++++.+... ...+..++.........++ + ..+.+||+||.... ..+. ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 2333344433333334444 4 56789999997321 2222 2246779999
Q ss_pred EEEEeCCCc------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 82 ILAFSLISK------ASYENVSKKWIPELKHYA--------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
++|+|+++. .+++.. ..|...+.... .+.|+++|+||+|+..... ..........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence 999999988 466665 45555554332 3689999999999965432 1122122333
Q ss_pred HHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 148 KLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
...+. +++++||+++.|++++++++.+.
T Consensus 148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 33344 79999999999999999998764
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=5.6e-23 Score=161.14 Aligned_cols=148 Identities=24% Similarity=0.280 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 74 (197)
..++|+++|.+|+|||||++++.+... .....+++.+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 348999999999999999999998653 45566666666666666766 45789999998654321 1235
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+.++|++++|+|++++.+++.. ..|.. ..+.|+++|+||+|+.+... . . ...+. +
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~--~------~~~~~-~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------L--E------EENGK-P 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------h--h------hccCC-c
Confidence 7889999999999999877754 33332 34789999999999965322 1 0 22333 7
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++++||++|.|+++++++|.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999998754
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=1.4e-22 Score=162.47 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+..+|+++|+.++|||||++++....+...+.+...... ...+.+++. ..+.+||||||+.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3568999999999999999999998877665444332222 223334332 26789999999999999988899999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-------hC-CCc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-------IG-APA 154 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~ 154 (197)
+|+|++++...+.. . .+..... .++|+++++||+|+.... .+........ ++ ..+
T Consensus 164 LVVda~dgv~~qT~-e-~i~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 164 LVVAADDGVMPQTI-E-AISHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI 226 (587)
T ss_pred EEEECCCCCCHhHH-H-HHHHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence 99999875433332 1 1222222 379999999999996421 1222222222 22 136
Q ss_pred eEEeccCCCCCHHHHHHHHHHH
Q 036449 155 YIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
++++||++|.|+++++++|...
T Consensus 227 ~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 227 FVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred EEEEECCCCCChHHHHHhhhhh
Confidence 9999999999999999998753
No 161
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.5e-22 Score=157.89 Aligned_cols=160 Identities=23% Similarity=0.252 Sum_probs=112.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR---------- 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------- 71 (197)
...++|+++|.+++|||||++++++... .....+++.+.....+..++. .+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 3458999999999999999999997653 344555655555555555554 57799999976544322
Q ss_pred -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-
Q 036449 72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL- 149 (197)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (197)
...+..+|++|+|+|++++.+.++. .+...+... +.|+++|+||+|+..... ...+....+...
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 313 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEK----------TREEFKKELRRKL 313 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHH----------HHHHHHHHHHHhc
Confidence 2357789999999999998777665 344444443 789999999999962111 011111122222
Q ss_pred --hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 --IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 --~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+..+++++||++|.|++++|+++.+.+..
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 233489999999999999999999887654
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=1.3e-22 Score=139.58 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccCc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR--------LRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 75 (197)
..+|+++|++|+|||||++++.+...... ...+........ .......+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999987654221 112221111111 222236678999999654322 223357
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++++|+|.+++.+.. ...+...+... +.|+++|+||+|+..... ...+....+....+..++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI 146 (168)
T ss_pred HhCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence 7899999999999872222 13444445444 689999999999974221 223334455555544589
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 036449 156 IECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~ 176 (197)
+++|++++.|++++++.|.+.
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 147 FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEEeccCCChHHHHHHHHhh
Confidence 999999999999999999775
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=9e-23 Score=143.34 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-----------------FDNFSANVVVNGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 70 (197)
+|+++|.+|+|||||++++...........+. ........... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999876654332211 11111112222 357889999999888888
Q ss_pred cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
+..++..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+..... ......+.++..+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI 146 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence 88888999999999999887655433 34444444 3799999999999975221 001122333333332
Q ss_pred C-------------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 151 G-------------APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 151 ~-------------~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+ ..+++++||++|.|+++++.++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1 347999999999999999999998863
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.1e-21 Score=135.93 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=104.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL-----------RP 72 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 72 (197)
.++|+++|.+|+|||||++++.+.... .....+...........++. .+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 589999999999999999999876532 23333333333344445553 4679999997543110 11
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHHHHhC
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELRKLIG 151 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (197)
..+..+|++++|+|.+++.+.... .+...+... +.|+++++||+|+..... ...+. ...+.+..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 245689999999999998776543 333333333 689999999999975421 11111 222333332
Q ss_pred ---CCceEEeccCCCCCHHHHHHHHHHH
Q 036449 152 ---APAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 152 ---~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
..+++++||+++.|++++++.+.+.
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2479999999999999999998764
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.3e-22 Score=162.03 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCce------eeeee---EEEEE---CCeEEEEEEEeCCCccc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT-------FPTDYVPTV------FDNFS---ANVVV---NGSTVNLGLWDTAGQED 66 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~~~------~~~~~---~~~~~---~~~~~~~~i~D~~G~~~ 66 (197)
.=+|+++|+.++|||||+++++... +...+..+. +..+. ..+.+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3479999999999999999998642 112221111 11111 11222 45678999999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|...+..++..+|++|+|+|++++.+.+.. ..|...+. .+.|+++|+||+|+.... ......++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el 146 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI 146 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence 998888899999999999999998777765 44444332 268999999999986422 12223455
Q ss_pred HHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 147 RKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 147 ~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.+..+.. .++++||++|.|++++|++|.+.+..+
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 5555552 489999999999999999999987654
No 166
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-23 Score=139.12 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=124.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC------CC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN------TF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL 73 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 73 (197)
|..+..+.|+++|..++|||||+.+.... .. +....+|.+... .++.+.+ ..+.+||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 45567799999999999999999655421 11 223344444333 2333443 56779999999999999999
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
++..+|++|+++|++|++.++.....+...+.... .+.|+++.+||.|+.+.... ........++...+.
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~---------~El~~~~~~~e~~~~ 159 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA---------AELDGVFGLAELIPR 159 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH---------HHHHHHhhhhhhcCC
Confidence 99999999999999999999988666666666555 79999999999999775320 111122222333332
Q ss_pred --CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 153 --PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 153 --~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.++.++||.+|+||++-..|+++.+..+
T Consensus 160 rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2689999999999999999999998877
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=1.6e-22 Score=142.56 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC----CCCCCC----CCceeeeeeEEEEE------------CCeEEEEEEEeCCCccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN----TFPTDY----VPTVFDNFSANVVV------------NGSTVNLGLWDTAGQED 66 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~----~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~ 66 (197)
++|+++|++++|||||++++... .+...+ ..++.........+ .+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111111 11111111111222 23357889999999976
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE- 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~- 145 (197)
+..........+|++++|+|++++...... ..+. ..... +.|+++++||+|+..... .....++..+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 544433445678999999999986554443 2221 22222 679999999999864221 0011222222
Q ss_pred HHHH-----hCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 146 LRKL-----IGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 146 ~~~~-----~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+... ....+++++||++|.|++++++.+..++.-+
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111 1223799999999999999999999887643
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=1.8e-22 Score=137.86 Aligned_cols=142 Identities=22% Similarity=0.168 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----cccccCcCCCcEEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~~~~i~ 83 (197)
+|+++|.+|+|||||++++.+..... ..+ ....+... .+||+||..... ......+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999977543111 111 11222222 269999973221 111223678999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-CceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-PAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~ 162 (197)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+. ..+...+++...+. .+++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA-------------DVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc-------------cHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998876532 232222 236799999999998542 23455666667764 3899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
+.|++++|+.+.+.+.+.
T Consensus 132 g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ccCHHHHHHHHHHhchhh
Confidence 999999999998877554
No 169
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=131.15 Aligned_cols=169 Identities=25% Similarity=0.518 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.++|.++|.+..|||||+-++.++.+.+.+..+.+..+ .+.+.+.+..+.+.+||.+|++++..+.+....++-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 48999999999999999999999998877777776555 56788899999999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
+|++.++++..+ ..|+..-+....-..-|+||+|.|+.-.-. ++..+....+++.+++-+++ +.+.||+...-
T Consensus 100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~sI 172 (205)
T KOG1673|consen 100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHSI 172 (205)
T ss_pred EecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeeccccc
Confidence 999999999999 788888776653333367799999743211 11122334578899999999 89999999999
Q ss_pred CHHHHHHHHHHHHcCCC
Q 036449 165 NVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~ 181 (197)
|+..+|.-+...+.+-+
T Consensus 173 Nv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cHHHHHHHHHHHHhCCc
Confidence 99999999998887754
No 170
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=3e-22 Score=149.86 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=110.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc--------cccccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN--------RLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 74 (197)
+.-.|+++|.+|||||||++++.+.... ...+.|+..........++ .++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999999987653 2223333322222222232 678899999964322 122335
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+..... ........+.+..+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~~--~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP--GDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh--hHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 6789999999999984322 113344444432 689999999999974321 22344556666566568
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++++||+++.|++++++++.+.+...+
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999886543
No 171
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=1.1e-22 Score=144.23 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC-cEEEEEEe
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 86 (197)
+|+++|++|||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..++..+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988776655543222221121113346788999999999988888888888 99999999
Q ss_pred CCCc-hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCC
Q 036449 87 LISK-ASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDD 125 (197)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~ 125 (197)
.++. .++.++...++..+... .+++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 67777645555544432 268999999999998653
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=6.7e-22 Score=139.89 Aligned_cols=162 Identities=19% Similarity=0.140 Sum_probs=104.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLRP 72 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 72 (197)
+...++|+++|.+|+|||||++++.+..+...+.++.+.......... ...+.+||+||.. .+.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 456689999999999999999999987654444444432222211111 2568899999952 2222223
Q ss_pred cCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 73 LSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.++. ..+++++++|.+++.+.... .+...+... +.|+++++||+|+.+... .....+.+......
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence 3333 34678889998876544332 233334333 689999999999965321 00112223333333
Q ss_pred hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
... +++++||+++.|++++++.|.+.+.+
T Consensus 167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDD-EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 344 89999999999999999999887653
No 173
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=4.1e-22 Score=162.23 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=111.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee---eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF---DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
.+..+|+++|+.++|||||++++....+.....+... ..+......++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3667999999999999999999998776544332221 1222223333445788999999999999999889999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH---HHHHhC-CCceE
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE---LRKLIG-APAYI 156 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 156 (197)
+|+|+|++++...+.. .. +..+.. .++|+++++||+|+..... .....+... +...++ ..+++
T Consensus 322 aILVVDA~dGv~~QT~-E~-I~~~k~--~~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EA-INYIQA--ANVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred EEEEEECcCCCChhhH-HH-HHHHHh--cCceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence 9999999886433332 11 222322 3789999999999965321 000011111 122233 24799
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~ 177 (197)
++||++|.|++++++.|....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999998764
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.5e-22 Score=156.10 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccCcC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 76 (197)
.+|+++|.+|||||||++++.+... .....+++.+.......+++ ..+.+|||||++. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999997663 44555555555555566666 6788999999876 2222344678
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|.+++.+..+. .+...++.. +.|+++|+||+|+... .+...++ ...+...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~--------------~~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE--------------EADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc--------------hhhHHHH-HhcCCCCCE
Confidence 89999999999886554332 333444444 7899999999996431 1222233 345654689
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~ 177 (197)
++||++|.|++++++.+.+..
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998844
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=6.6e-22 Score=155.47 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccCcCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLSYRG 77 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 77 (197)
+|+++|.+|||||||++++.+... ...+.+++.+.......+++ ..+.+|||||.. .+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 34455555555555566666 457899999963 333445557789
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|..++.+..+. .+...++.. +.|+++|+||+|+..... ...+ ....+..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--------------~~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--------------VAAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc--------------cHHH-HHhcCCCCeEE
Confidence 9999999999886555442 344555544 789999999999865321 1122 23556667999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+||++|.|+.++++.+.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999887553
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.1e-21 Score=150.02 Aligned_cols=157 Identities=22% Similarity=0.218 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccC---cCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~~ 79 (197)
.|+++|.++||||||++++..... ...++.|+.......+.+++ ...+.+||+||...- ..+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999997653 23444444322222233331 256889999996421 1122223 45689
Q ss_pred EEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 80 VFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
++++|+|+++. +.+++. ..|...+.... .+.|++||+||+|+... .+....+.+.++.
T Consensus 239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~- 302 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP- 302 (424)
T ss_pred EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC-
Confidence 99999999865 556665 67777777654 37899999999998321 2334556666664
Q ss_pred ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+++++||+++.|+++++++|.+.+...+
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999876654
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=3.5e-22 Score=139.38 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCcc----------cccc
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQE----------DYNR 69 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~----------~~~~ 69 (197)
|+..+.++|+++|.+|+|||||++++.+..+...+.++.+...... ...++ .+.+||+||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 4567889999999999999999999998764333333333222211 22232 47799999952 2222
Q ss_pred ccccCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449 70 LRPLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146 (197)
Q Consensus 70 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
+...++. .++++++|+|.+++.+..+. .++..+... +.|+++++||+|+..... .....++.++.
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~ 157 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA 157 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 2223333 45799999999886555544 334444444 789999999999964321 01223444444
Q ss_pred HHHhCC-CceEEeccCCCCCHH
Q 036449 147 RKLIGA-PAYIECSSKTQQNVK 167 (197)
Q Consensus 147 ~~~~~~-~~~~~~sa~~~~~i~ 167 (197)
....+. ..++++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 444432 279999999999873
No 178
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=6.1e-22 Score=140.63 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCC---C--CCCceeeee-eEEEE-----------------------EC--C----
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPT---D--YVPTVFDNF-SANVV-----------------------VN--G---- 51 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~---~--~~~~~~~~~-~~~~~-----------------------~~--~---- 51 (197)
++|+++|+.|+|||||+..+....... + ...+....+ ..... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999986542111 0 000000000 00000 00 1
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~ 131 (197)
....+.||||||++.|...+...+..+|++++|+|++++...... ...+..+... ...|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~---- 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ---- 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH----
Confidence 125788999999999888777788899999999999874211111 1122222222 1347999999999965321
Q ss_pred CCCCCcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 132 HPGAVPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.....++.+++...+ +. +++++||++|.|++++|+.|.+.+..+
T Consensus 155 ----~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ----ALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ----HHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 001123333444332 33 799999999999999999999877653
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=1.5e-21 Score=137.20 Aligned_cols=161 Identities=24% Similarity=0.277 Sum_probs=109.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--------------------VPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
++.++|+++|+.++|||||+.+++........ .-|. ...............+.++|+||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti-~~~~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITI-DLSFISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSS-SSEEEEEEBTESSEEEEEEEESS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccc-ccccccccccccccceeeccccc
Confidence 35789999999999999999998854321110 0000 00111122013346788999999
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
+..|.......+..+|++|+|+|+.++..... ...+..+... +.|+++++||+|+...+. .....+..
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~--------~~~~~~~~ 147 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL--------EEIIEEIK 147 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH--------HHHHHHHH
T ss_pred ccceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH--------HHHHHHHH
Confidence 99988877778899999999999998755443 3455556555 789999999999973221 00111222
Q ss_pred HHHHHHhCC-----CceEEeccCCCCCHHHHHHHHHHHH
Q 036449 144 EELRKLIGA-----PAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 144 ~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
..+.+.++. .+++++||.+|.|++++++.|.+.+
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 244444433 3699999999999999999998875
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.1e-21 Score=159.30 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=109.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+...|+++|+.++|||||+++|....+.....+...... ...+.+++ ..++||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999988776554433332122 22344444 56889999999999999988899999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH--HHHHHHHHhC-CCceEEec
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA--QGEELRKLIG-APAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s 159 (197)
+|||++++..-+.. ..| ..... .++|+++++||+|+...+. ..+..+ ....+...++ ..+++++|
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 99999985333322 121 22222 3799999999999964321 001111 0111223333 23799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 036449 160 SKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~ 176 (197)
|++|.|++++|++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999999764
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=2.8e-21 Score=150.14 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--ccccc------cCcCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~ 77 (197)
.+|+++|.+|+|||||+|++.+.... .+...++.+.....+.+.+. ..+.+|||||..+. ...+. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999976542 23334444444444545442 24679999997332 11111 23578
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|++++|+|++++.+++.+ ..|...+.... .+.|+++|+||+|+.+... ... . ....+...++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~---~-~~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRI---D-RDEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHH---H-HHhcCCCceE
Confidence 9999999999999877776 44444444433 4799999999999964211 001 1 1123442358
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+||++|.|+++++++|.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998854
No 182
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7e-22 Score=132.65 Aligned_cols=163 Identities=28% Similarity=0.440 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.++++++|..|.||||++++...+.|...+.+|.+..........+. .+.+..|||.|++.+..+...++-++...|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999997666555554433 59999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
+|++.+-++..+ ..|...+...+.++|+++.|||.|...... ......+.+..++ .|++.||+++.
T Consensus 90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~------------k~k~v~~~rkknl-~y~~iSaksn~ 155 (216)
T KOG0096|consen 90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARKV------------KAKPVSFHRKKNL-QYYEISAKSNY 155 (216)
T ss_pred eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceecccccc------------ccccceeeecccc-eeEEeeccccc
Confidence 999999999998 788888888888999999999999865431 1222345566666 89999999999
Q ss_pred CHHHHHHHHHHHHcCCCc
Q 036449 165 NVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~~~~ 182 (197)
|.+.-|-|+.+.+...+.
T Consensus 156 NfekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 156 NFERPFLWLARKLTGDPS 173 (216)
T ss_pred ccccchHHHhhhhcCCCC
Confidence 999999999999877643
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=4.8e-21 Score=154.52 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=114.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC-----CCCc------eeeee---eEEEEE---CCeEEEEEEEeCC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD-----YVPT------VFDNF---SANVVV---NGSTVNLGLWDTA 62 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~-----~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~ 62 (197)
...+.-+|+++|+.++|||||+.+++... +... +..+ .+..+ ...+.+ ++..+.+++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 33456689999999999999999998632 2110 0000 01111 111122 4557889999999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
|+.+|...+..++..+|++|+|+|++++...+.. ..|.... . .+.|+++|+||+|+..... ...
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~--~~lpiIvViNKiDl~~a~~------------~~v 146 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-E--NDLEIIPVLNKIDLPAADP------------ERV 146 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-H--CCCCEEEEEECCCCCcccH------------HHH
Confidence 9999998888899999999999999988666554 3443332 2 3689999999999864321 122
Q ss_pred HHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 143 GEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 143 ~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
..++.+..+.. .++++||++|.|+++++++|.+.+..+
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 23444445542 389999999999999999999987654
No 184
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=7e-21 Score=137.42 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=118.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--------cccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY--------NRLR 71 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~ 71 (197)
...+.--|+++|.|++|||||+|++.+.+.+ ..-+.|+........+.++ .++.++||||...- ....
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 4456678999999999999999999988763 3344555555555555554 67789999994321 2333
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+..+|+++||+|++++....+ ...++.+... +.|+++++||.|..+... ........+.....
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~ 145 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP 145 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence 456788999999999988544432 3445556552 689999999999876542 11333445555566
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
....+++||++|.|++.+.+.+...+.+.+
T Consensus 146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 146 FKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 667899999999999999999999887754
No 185
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5e-21 Score=149.76 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----c---ccccCcCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----R---LRPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~ 78 (197)
..|+++|.++||||||++++..... ..+++.|+.......+.+.+ ..+++||+||...-. . .....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5699999999999999999987543 23455555333333444444 568899999953211 1 112235679
Q ss_pred cEEEEEEeCCCc----hhHHHHHHHHHHHHhhh------------CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449 79 DVFILAFSLISK----ASYENVSKKWIPELKHY------------APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142 (197)
Q Consensus 79 ~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~------------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
+++|+|+|+++. ..+++. ..+...+... ..+.|+++|+||+|+.+... . .+.
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l-~e~ 305 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------L-AEF 305 (500)
T ss_pred CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------H-HHH
Confidence 999999999863 233333 3343344322 13689999999999964321 1 122
Q ss_pred HHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 143 GEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 143 ~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
........+. +++++||+++.|+++++.+|.+.+...+
T Consensus 306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 2222334465 8999999999999999999999886654
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=5.2e-21 Score=154.10 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.|+++|+.++|||||++++.+.. +..++..... +.....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999998632 3222222222 22222344444 67889999999999888888889999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCceEEe
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APAYIEC 158 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (197)
+|+|++++...+.. ..+..+... ++| +++|+||+|+.+... .....++...+...++ ..+++++
T Consensus 79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 99999984322221 222233333 677 999999999965331 0012344555555553 2389999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
||++|.|+++++..+.+.+....
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHhCC
Confidence 99999999999999988776543
No 187
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=5.2e-21 Score=153.36 Aligned_cols=170 Identities=18% Similarity=0.137 Sum_probs=105.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce----eeeeeEEEEEC-------------CeEEEEEEEeCCCcccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----FDNFSANVVVN-------------GSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~ 67 (197)
+..-|+++|++++|||||++++.+..+.....+.. +..+....... .....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999999887754433322 21111110000 01123789999999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC-------CCccc-
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-------AVPIS- 139 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-------~~~~~- 139 (197)
..++..++..+|++++|+|+++....+.. ..+..+... +.|+++++||+|+.+........+. ...+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99988899999999999999984332222 112233333 7899999999999642110000000 00000
Q ss_pred ------HHHHHHHH-------------HHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 140 ------TAQGEELR-------------KLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 140 ------~~~~~~~~-------------~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
.....+++ ...+..+++++||++|+|+++++.+|.....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00001111 1123348999999999999999999876543
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=3.7e-21 Score=158.73 Aligned_cols=158 Identities=23% Similarity=0.242 Sum_probs=112.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----------YNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 71 (197)
+..++|+++|.+|||||||++++++... ...+.+|+.+.......+++.. +.+|||||..+ |..+.
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 3458999999999999999999998763 4556667766666666677754 55999999632 11111
Q ss_pred -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHHHH
Q 036449 72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELRKL 149 (197)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (197)
...+..+|++++|+|++++.+.++. .+...+... +.|+++|+||+|+.+... .+... .+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~ 589 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTE 589 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHh
Confidence 2346789999999999999888776 344444433 789999999999964321 11111 12221
Q ss_pred ---hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 ---IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 ---~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
....+.+++||++|.|++++++.+.+.+..
T Consensus 590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 590 FDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 223367999999999999999999988765
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.1e-21 Score=149.83 Aligned_cols=160 Identities=21% Similarity=0.214 Sum_probs=108.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----------c-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL----------R- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~- 71 (197)
..++|+++|.+|+|||||++++++.. ......+++.+........++ ..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999754 234445555544444454555 44669999996432211 1
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+..+|++|+|+|++++.+.++. .+...+... +.|+++|+||+|+.+... .. ...++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~-------~~-~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT-------ME-EFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH-------HH-HHHHHHHHhccccc
Confidence 1256789999999999998777665 344444444 689999999999963221 00 01111111111223
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
..+++++||+++.|++++++.+.+...
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999887654
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.5e-20 Score=155.14 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 74 (197)
...+|+++|.++||||||++++.+... ....+.++.+.......+++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 347899999999999999999997653 33344444444443444555 4577999999763 22333446
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++|+|+|.++.....+ ..|...++.. +.|+++|+||+|+.... ... ..+. ..+...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~-~~~~-~lg~~~ 412 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDA-AEFW-KLGLGE 412 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhH-HHHH-HcCCCC
Confidence 789999999999987543332 3556666554 89999999999985421 111 2221 233335
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+++||++|.|+++++++|.+.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 6799999999999999999998855
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=4.3e-21 Score=150.35 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=102.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC------------------------------CCCceeeeeeEEEE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD------------------------------YVPTVFDNFSANVV 48 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~------------------------------~~~~~~~~~~~~~~ 48 (197)
|++.+.++|+++|++++|||||+++|+.... ... ...++.+.. ...
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~--~~~ 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLA--HKK 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceee--eEE
Confidence 7889999999999999999999999984321 100 111111111 122
Q ss_pred ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
+....+.+.+|||||++.|.......+..+|++++|+|++++.........++...... ...|+++++||+|+.....
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~- 156 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE- 156 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence 33344778999999998887655556788999999999987312211112222233222 2246999999999965211
Q ss_pred ccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHHH
Q 036449 129 FIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l~ 170 (197)
.......++...+....+. .+++++||++|.|+++++
T Consensus 157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0001123445556555553 369999999999998744
No 192
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=123.95 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=118.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--------CCCC---ce-eeeeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--------DYVP---TV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--------~~~~---~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 70 (197)
.....+|+|+|+.++||||+++++....... .+.. |+ .-.+......+ ...+.+++||||++|..+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~--~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE--DTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC--cceEEEecCCCcHHHHHH
Confidence 3466899999999999999999998776421 1111 11 22222222222 245779999999999999
Q ss_pred cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
|..+++++.++|+++|-+++..+ .. ...+..+....+ +|++|++||.|+.... ..+..+++...-
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~~ 149 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKLE 149 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHhc
Confidence 99999999999999999999988 44 577777777754 9999999999997753 345555544433
Q ss_pred --CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 151 --GAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 151 --~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.. +.++.+|.++++..+.++.+...
T Consensus 150 ~~~~-~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSV-PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCC-ceeeeecccchhHHHHHHHHHhh
Confidence 44 89999999999999999998876
No 193
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.2e-20 Score=143.62 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=111.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 79 (197)
.|+++|.++||||||++++...+. ...++.|+.......+...+ ...+.++|+||...-. ......+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999987543 34455555444433444432 2347799999964311 11112467899
Q ss_pred EEEEEEeCC---CchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-
Q 036449 80 VFILAFSLI---SKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA- 152 (197)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (197)
++++|+|++ +.+.++.. ..|...+.... .+.|+++|+||+|+..... ..+....+.+..+.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE 307 (390)
T ss_pred EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence 999999998 44556655 56777776653 3689999999999964321 12334445555443
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.+++.+||+++.|++++++.|.+.+...
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2689999999999999999999988664
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=4.7e-20 Score=133.29 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 79 (197)
+|+++|.+|+|||||++++.+... ...++.++.......+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997653 33444444333344455555 568899999975432 12234688999
Q ss_pred EEEEEEeCCCchh-HHHHHHHHHH--------------------------------------------H-----------
Q 036449 80 VFILAFSLISKAS-YENVSKKWIP--------------------------------------------E----------- 103 (197)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~----------- 103 (197)
++++|+|+++++. .+.+ ...+. .
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 2222 11111 1
Q ss_pred -----------HhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHH
Q 036449 104 -----------LKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172 (197)
Q Consensus 104 -----------i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~ 172 (197)
+.....-.|+++|+||+|+.. .+++..+++. .+++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 111112358999999999843 3344444432 26899999999999999999
Q ss_pred HHHHHc
Q 036449 173 AIRVVL 178 (197)
Q Consensus 173 i~~~~~ 178 (197)
+.+.+.
T Consensus 221 i~~~L~ 226 (233)
T cd01896 221 IWDKLG 226 (233)
T ss_pred HHHHhC
Confidence 998653
No 195
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=1.6e-20 Score=127.97 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=102.4
Q ss_pred EEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cCcCCCcEE
Q 036449 11 TVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~~~~~~~~ 81 (197)
++|++|+|||||++++.+.... ....+++............ ...+.+||+||...+..... .++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876543 2223333333333333321 35688999999876654333 367889999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH--HHHHHHHhCCCceEEec
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ--GEELRKLIGAPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s 159 (197)
++|+|.++..+.... . +...... .+.|+++|+||+|+..... ..... ...........+++++|
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence 999999998877766 2 3333333 3799999999999976432 11110 11222233334899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 036449 160 SKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~ 176 (197)
|+++.|+.++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999875
No 196
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.8e-20 Score=151.13 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=105.2
Q ss_pred cCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccC--cCCCcEEEE
Q 036449 13 GDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLS--YRGADVFIL 83 (197)
Q Consensus 13 G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~--~~~~~~~i~ 83 (197)
|.+|+|||||++++.+... ..+++.++.+.....+.+++ ..+++||+||+.++... ...+ ...+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 33444444444445555665 35679999999877543 2222 247899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|+|.++.+... .+...+... +.|+++|+||+|+.+... . ..+.+.+++..+. +++++||++|
T Consensus 79 VvDat~ler~l----~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i-~~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERNL----YLTLQLLEL--GIPMILALNLVDEAEKKG----------I-RIDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhhH----HHHHHHHhc--CCCEEEEEehhHHHHhCC----------C-hhhHHHHHHHcCC-CEEEEECCCC
Confidence 99998754321 222333333 799999999999965432 2 2345678888887 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIRVV 177 (197)
Q Consensus 164 ~~i~~l~~~i~~~~ 177 (197)
.|++++++++.+.+
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 197
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-21 Score=125.87 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=123.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+..+|+++|-.|+||||++-++..+..... .|+.+.... . +..+++.+++||..|+-..+..|.-|+.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve-~--v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE-T--VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc-c--cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 3789999999999999999988877665544 344432221 1 22356889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|+|.+|..........++.++++.. .+..+++++||.|.....- ..++.......-.++.-. .++++||.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t-------~~E~~~~L~l~~Lk~r~~-~Iv~tSA~k 163 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT-------RSEVLKMLGLQKLKDRIW-QIVKTSAVK 163 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh-------HHHHHHHhChHHHhhhee-EEEeecccc
Confidence 9999999888777667788887665 6788899999999865321 000111111122222223 799999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
|+|+++.++|+.+.+.+.
T Consensus 164 g~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccCCcHHHHHHHHHHhcc
Confidence 999999999999887654
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.2e-19 Score=148.13 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc----------c
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP----------L 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~ 73 (197)
+.++|+++|++|+|||||+|++.+... ..++..++.+.....+..+ ...+.+||+||+..+..... .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999987543 2344444443333333333 46678999999877653211 1
Q ss_pred C--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 74 S--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+ ...+|++++|+|.++.+... .+...+.+. +.|+++++||+|+.+.+. . ..+.+.+++..+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG 142 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLG 142 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhC
Confidence 2 24789999999999865432 233444444 799999999999865432 2 345567888889
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
. +++++||.+++|++++.+.+.+..
T Consensus 143 ~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 143 C-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 8 899999999999999999998765
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=2.7e-20 Score=145.85 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=101.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhh--CCCCCC------------------------------CCCceeeeeeEEEEEC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTS--NTFPTD------------------------------YVPTVFDNFSANVVVN 50 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~ 50 (197)
+.+.++|+++|+.++|||||+.+|+. +..... ....+.+.. ...+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence 35679999999999999999999985 222110 000111111 12233
Q ss_pred CeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 51 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~ 129 (197)
...+.+.+||+||++.|.......+..+|++++|+|++++++..... ..+.. +.......++++++||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~~~-- 158 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNYDE-- 158 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCccH--
Confidence 33477899999999988766666778999999999999885432110 11112 222223357999999999964221
Q ss_pred cCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449 130 IDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l 169 (197)
........+.+.+++..+. .+++++||++|.|+.+.
T Consensus 159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 0011223456667776653 37999999999999863
No 200
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=2.7e-20 Score=122.28 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----cccccccccCcCCCcEEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ----EDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~ 83 (197)
||+++|+.|+|||||+++|.+...... .|.. +. +.=.++||||. ..|.........+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~------i~-----~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQA------IE-----YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--ccce------eE-----ecccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998765322 2221 11 11136999994 2333444445668999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
+.|.+++.+.-. +.+...+ +.|+|-|+||+|+.... .+.+.++++.+.-|+..+|++|+.+|
T Consensus 70 l~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCC------chhhccc-CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 999998754322 1122222 57999999999998432 35677888889999988999999999
Q ss_pred CCHHHHHHHHH
Q 036449 164 QNVKAVFDAAI 174 (197)
Q Consensus 164 ~~i~~l~~~i~ 174 (197)
+|+++|.+.|.
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999998874
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=7.7e-20 Score=138.97 Aligned_cols=151 Identities=20% Similarity=0.214 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------cccccCc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN---------RLRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 75 (197)
..|+++|.|+||||||+|++.+... ..+++.++.+.......+.+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999998654 6788888888888888887754 7799999965322 2334457
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..||++|||+|...+.+-.+- .....++.. +.|+++|+||+|-... .+.+.+| ..+|....
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~~--------------e~~~~ef-yslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLKA--------------EELAYEF-YSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCchh--------------hhhHHHH-HhcCCCCc
Confidence 789999999999887665543 445555533 6999999999998531 1222333 44666689
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+.+||..|.|+.+|.+.+++.+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 202
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=5.1e-20 Score=118.07 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|-.++||||++..+.+..... ..||.+- ....+..++ .+.+++||.+|+...+..|..|+.+.|++||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF-n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF-NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc-ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 578999999999999999999988765432 3444432 233344443 5889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH--HHH-HhCCCceEEec
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE--LRK-LIGAPAYIECS 159 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~s 159 (197)
|+|.+|...|+++...+.+.+.... ...|+.+.+||.|+.-... + .+.+.. ++- ..+...+-+||
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~----------~-eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK----------V-EEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc----------h-HHHHHhcchhhhhhceEEeeeCc
Confidence 9999999999998777777666554 6899999999999964321 1 111111 111 11122466799
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 036449 160 SKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~ 177 (197)
|.+++|+..-.+|+.+..
T Consensus 161 als~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccccCccCcchhhhcCC
Confidence 999999999988877654
No 203
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=2.1e-22 Score=134.78 Aligned_cols=165 Identities=27% Similarity=0.448 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
++++|+|..|+|||+++.+++...++..|..|++..+. .....+ ...+++++||..||++|..+...+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 78999999999999999999999998888888865553 223333 3446889999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--C---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--P---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
+|+++..+|+.. ..|.+.+-... | -.|+++.+||||+.+... ........++.++.++...+++|
T Consensus 106 fdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwtets 175 (229)
T KOG4423|consen 106 FDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTETS 175 (229)
T ss_pred EEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceeeec
Confidence 999999999998 78988887765 3 367899999999977542 12235566888899998999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.+.++.|.-..+++++.-+.
T Consensus 176 ~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred cccccChhHHHHHHHHHHHhhc
Confidence 9999999999999999876654
No 204
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=3.4e-19 Score=143.43 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=103.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc----eeeeeeEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT----VFDNFSANVVV---NGST-----V-----NLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~-----~-----~~~i~D~~G~~~ 66 (197)
.+...|+++|++++|||||++++.+.......... .+..+...... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45678999999999999999999876554333322 22211111000 0111 1 167999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCC---chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC-------C
Q 036449 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA-------V 136 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-------~ 136 (197)
|..++...+..+|++++|+|+++ +++++.+ ..+... +.|+++++||+|+..........+.. .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888889999999999998 4444433 223332 78999999999985321100000000 0
Q ss_pred ccc------HHHHHHHHHH--------------hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 137 PIS------TAQGEELRKL--------------IGAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 137 ~~~------~~~~~~~~~~--------------~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.+. ..+...+... .+..+++++||++|.|+++++..+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000 0000011111 1234789999999999999999887543
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=4.2e-19 Score=124.85 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCC------CCC-----CCc---eeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFP------TDY-----VPT---VFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~------~~~-----~~~---~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~ 70 (197)
.++|+++|+.++|||||+++++..... ..+ .+. .+... .....+.....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999753100 000 000 00000 111223333456789999999888776
Q ss_pred cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
....+..+|++++|+|++.+-.-+. ...+..+... +.| +++++||+|+..... ......++...+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~ 150 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK 150 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence 6777889999999999987643332 2344444444 566 788999999863221 011122345555555
Q ss_pred hCC----CceEEeccCCCCCH
Q 036449 150 IGA----PAYIECSSKTQQNV 166 (197)
Q Consensus 150 ~~~----~~~~~~sa~~~~~i 166 (197)
.+. .+++++||++|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 443 47999999999874
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=3.6e-19 Score=122.63 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCccc----------cccccccCc-
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED----------YNRLRPLSY- 75 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~- 75 (197)
.|+++|.+|+|||||++.+.++.+.....++.+..... ....++ .+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 38999999999999999999665544444443222221 222222 678999999532 222222233
Q ss_pred --CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449 76 --RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA 152 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (197)
.+.+++++++|.++..+.... .....+... +.|+++++||+|+..... ............+ ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 346788999999876432221 233334333 589999999999954321 0011122222222 2344
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.+++++||+++.++.+++++|.+.+
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHhC
Confidence 4799999999999999999998753
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=1.5e-19 Score=128.85 Aligned_cols=151 Identities=18% Similarity=0.093 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------------------CCCceeeeeeEEEEECCeEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTD--------------------------------YVPTVFDNFSANVVVNGSTVN 55 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (197)
||+++|++|+|||||+++++...-.-. ...++.+.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999875321100 01111111111222233 46
Q ss_pred EEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC
Q 036449 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~ 135 (197)
+.+|||||+++|.......+..+|++|+|+|++++..-+.. .....+... ...++++|+||+|+.+... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV 149 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence 77999999988766566678899999999999876432222 222222222 1235788999999964221 00
Q ss_pred CcccHHHHHHHHHHhCC--CceEEeccCCCCCHHHH
Q 036449 136 VPISTAQGEELRKLIGA--PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l 169 (197)
......+.+.+...++. .+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00112344555666664 25899999999998753
No 208
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=3.9e-19 Score=143.17 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh--CCCCCCCCCc------------eeeee-eEEEEECCeEEEEEEEeCCCccccccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTS--NTFPTDYVPT------------VFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~--~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 72 (197)
+|+++|+.++|||||+.+++. +.+....... .+... .....+....+.+++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999986 3332211000 01111 11122222347888999999999998888
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH---
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL--- 149 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (197)
.++..+|++++|+|+++...-+ . ..|+..+... ++|+++|+||+|+...+. ....++...+...
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA 149 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence 8999999999999998754322 2 3555555554 789999999999865321 0112233333322
Q ss_pred ----hCCCceEEeccCCCC----------CHHHHHHHHHHHHcCC
Q 036449 150 ----IGAPAYIECSSKTQQ----------NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 150 ----~~~~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~ 180 (197)
..+ +++.+||++|. |+..+|+.|++.+..+
T Consensus 150 ~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 150 DDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 234 79999999995 7999999999988655
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=2.2e-19 Score=139.69 Aligned_cols=164 Identities=18% Similarity=0.119 Sum_probs=103.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---C--CCCceeee-----------------eeEEEEECC------eEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---D--YVPTVFDN-----------------FSANVVVNG------STVN 55 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~--~~~~~~~~-----------------~~~~~~~~~------~~~~ 55 (197)
.+.++|+++|+.++|||||++++....... + .--|.... +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467999999999999999999986432111 0 00000000 000000011 1357
Q ss_pred EEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC
Q 036449 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~ 135 (197)
+++||+||+++|...+......+|++++|+|++++...... ...+..+... ...|+++++||+|+.+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~-------- 151 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK-------- 151 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence 88999999999988777778889999999999975311111 1222233222 1246899999999975321
Q ss_pred CcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 136 VPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
.....++...+.... +. +++++||++|+|+++++++|.+.+.
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 001123333443332 33 7999999999999999999998764
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=7.5e-19 Score=133.63 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=119.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLR- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 71 (197)
..++|+++|.|++|||||+|++++.. .......|+.+.....+..+++.+ .++||.|.. .|....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999754 456778888888888888888554 599999933 232222
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+..++.+++|+|++.+-+-++. .....+... +.++++|+||.|+.+.+. .....-..+........+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~------~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE------ATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh------hHHHHHHHHHHHHhcccc
Confidence 2246679999999999998877765 556666666 799999999999977532 000011122333334445
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..+.+.+||+++.++.++|+.+.+....
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 5588999999999999999998875444
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=8.5e-19 Score=141.84 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC---CCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDY--VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+-|.++|+.++|||||++++.+.. +..+. ..|....+......++ ..+.+||+||++.|.......+..+|++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 358899999999999999998532 22221 1222111111111123 3478999999999877766778899999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC--CceEEe
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA--PAYIEC 158 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (197)
++|+|++++..-+.. ..+..+... +.| +++|+||+|+.+... .....++...+....+. .+++++
T Consensus 79 lLVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~V 146 (614)
T PRK10512 79 LLVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVT 146 (614)
T ss_pred EEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999875332222 223334333 455 579999999965321 00112344455444442 379999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
||++|.|++++++.|.+.....
T Consensus 147 SA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 147 AATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred eCCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999998765543
No 212
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.2e-18 Score=140.30 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYV------------PTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~ 69 (197)
+.-+|+++|+.++|||||+.+++. +.+..... .+.+.. ......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999986 33332211 111111 122233344457899999999999999
Q ss_pred ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+..++..+|++|+|+|+++....+.. .++...... +.|.++++||+|+...+. ....++...+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 888999999999999999886444332 333333333 789999999999865331 0112233333211
Q ss_pred -------hCCCceEEeccCCCC----------CHHHHHHHHHHHHcCC
Q 036449 150 -------IGAPAYIECSSKTQQ----------NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 150 -------~~~~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~ 180 (197)
..+ +++.+||++|. ++..+++.|+..+..+
T Consensus 151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 223 78999999998 5889999988887655
No 213
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.81 E-value=7.4e-20 Score=141.77 Aligned_cols=167 Identities=26% Similarity=0.377 Sum_probs=122.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|..|+||||||.++....|++..++-.. .+..-..+....+...+.|++..+.-+.....-++.+|++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4679999999999999999999999999876444432 222112222233557799998655444443455788999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHHHhCCCceEEec
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s 159 (197)
+|+++++++++.+...|++.++... .++|+|+||||+|....... ..+. ......+|.+ ...+++||
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~------s~e~~~~pim~~f~E---iEtciecS 156 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN------SDEVNTLPIMIAFAE---IETCIECS 156 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc------chhHHHHHHHHHhHH---HHHHHhhh
Confidence 9999999999999999999999988 68999999999999765430 0000 0111122222 22589999
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~ 180 (197)
|++..++.++|..-.+.+..+
T Consensus 157 A~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhHhhhhhhhheeecc
Confidence 999999999999977776654
No 214
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=2.8e-18 Score=123.14 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-----------------------eee-eEE-------------EEEC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-----------------------DNF-SAN-------------VVVN 50 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-----------------------~~~-~~~-------------~~~~ 50 (197)
||+++|+.++|||||+.+|..+.+......... ... ... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997665432110000 000 000 0011
Q ss_pred CeEEEEEEEeCCCccccccccccCc--CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 51 ~~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
.....+.++|+||++.|.......+ ..+|++++|+|+..+..-.+ ..++..+... ++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence 1235678999999998865444334 36899999999987654333 3555666555 6899999999998643210
Q ss_pred ccCCCCCCcccHHHHHHHHH-------------------------HhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449 129 FIDHPGAVPISTAQGEELRK-------------------------LIGAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
.....+..++.. .....+++.+||.+|.|++++...|..
T Consensus 157 --------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 --------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred --------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 011111222211 111338999999999999999887643
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=4.1e-19 Score=127.12 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCce------eeee---eEEEEE---CCeEEEEEEEeCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDY-----------VPTV------FDNF---SANVVV---NGSTVNLGLWDTAGQ 64 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~-----------~~~~------~~~~---~~~~~~---~~~~~~~~i~D~~G~ 64 (197)
+|+++|+.|+|||||+.+++........ ..+. +... .....+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875433210 0010 0010 001111 345688999999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
..|......++..+|++++|+|+++..+... ..++...... +.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence 9988777778889999999999988776643 2344443333 68999999999985
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=7.4e-19 Score=136.66 Aligned_cols=166 Identities=17% Similarity=0.094 Sum_probs=102.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-----CCCceeee-----------------eeEEEEEC--C----eEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-----YVPTVFDN-----------------FSANVVVN--G----STV 54 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----~~~~~~~~-----------------~~~~~~~~--~----~~~ 54 (197)
..+.++|+++|+.++|||||+.++........ .-.|.... +......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 35679999999999999999988854311110 00111100 00000001 0 125
Q ss_pred EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
.+.+||+||++.|..........+|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.+...
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~-~l~~l~~~-~i~~iiVVlNK~Dl~~~~~------ 156 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-E-HLMALDII-GIKNIVIVQNKIDLVSKER------ 156 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-H-HHHHHHHc-CCCcEEEEEEeeccccchh------
Confidence 7889999999988766555666789999999999653 22222 1 12222222 1236899999999965321
Q ss_pred CCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 134 GAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.....++...+.+.+ ...+++++||+++.|++++++.|.+.+..
T Consensus 157 --~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 157 --ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred --HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 001123334444332 12379999999999999999999987643
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=9e-19 Score=133.56 Aligned_cols=152 Identities=26% Similarity=0.298 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccCc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 75 (197)
-++++++|.|++|||||+|++.+. ....+.+.|+.+.....+.++| +.+.+.||.|..+.... ....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 489999999999999999999975 4578889999999999999998 67779999996543311 12346
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.+||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+..... ........+. ++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~~~~~~~-~~ 353 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESEKLANGD-AI 353 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchhhccCCC-ce
Confidence 789999999999987433333 2222 2224789999999999976432 1111112222 68
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+.+|++++.|++.+.+.|.+.+...
T Consensus 354 i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 354 ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEEecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999999887765
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=6.1e-19 Score=127.27 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc------c------cccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE------D------YNRL 70 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~------~~~~ 70 (197)
+.+.++|+|+|.|++|||||.|.+++.+.......+...+....-.+.....++.|+||||.- . +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 367899999999999999999999998876544433333333322233344778899999921 1 1112
Q ss_pred cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC------CCCCCcccHHHHH
Q 036449 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID------HPGAVPISTAQGE 144 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~ 144 (197)
....+.+||.+++++|+++....-. -..+..+... .++|-++|.||.|.......... +........+..+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 2335668999999999997433222 1333333333 37899999999998765432211 0000000112222
Q ss_pred HHHHHh------------CCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 145 ELRKLI------------GAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 145 ~~~~~~------------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++...- ++..+|.+||++|+|++++-++|+.++...+
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 222211 1223789999999999999999999877654
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=2.3e-18 Score=124.70 Aligned_cols=113 Identities=22% Similarity=0.159 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCC------CCCceee-----------eeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTD------YVPTVFD-----------NFSANVVVNGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~------~~~~~~~-----------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 70 (197)
+|+++|+.|+|||||+++++...-... ...+..+ .......+......+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986421100 0000000 00111222223467889999999999888
Q ss_pred cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
+..+++.+|++++|+|.++...... ..+...+... +.|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 8888999999999999998755432 3555555554 789999999999874
No 220
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.79 E-value=4.7e-19 Score=126.60 Aligned_cols=166 Identities=19% Similarity=0.291 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCcccccc-----ccccCcCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYV---PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-----LRPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~ 79 (197)
||+++|+.||||||+.+.++.+..+.+.. +|.... ...+.. ...+.+++||+||+..+.. .....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999999876543321 222111 111111 2236789999999975533 3456789999
Q ss_pred EEEEEEeCCCchhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCc
Q 036449 80 VFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APA 154 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~--~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 154 (197)
++|||+|+.+.+-.+++. ...+..+....|++.+-++.+|+|+..+.... .......+...+.+...+ . .
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~-~ 153 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDI-T 153 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSE-E
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccce-E
Confidence 999999998554333331 34455666667999999999999997543200 000011233344444444 3 6
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.||..+ +.+.+.|..+++.+..+.
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 88888887 689999999999887653
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=3.3e-18 Score=132.62 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-----------C------CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-----------D------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
..+.++|+++|+.++|||||+.+|++..... + ....+.+ .....+......+.+||+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~--~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITIN--TAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEE--EEeeEecCCCcEEEEEECCCHH
Confidence 3567999999999999999999997531100 0 0111111 1112233334567899999999
Q ss_pred ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|++++..-+. ...+..+... ++| +++++||+|+.+... ......++..
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~ 155 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence 887766666778999999999987543332 2333444444 678 678899999864221 0011123455
Q ss_pred HHHHHhCC----CceEEeccCCCC--------CHHHHHHHHHHHHc
Q 036449 145 ELRKLIGA----PAYIECSSKTQQ--------NVKAVFDAAIRVVL 178 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~--------~i~~l~~~i~~~~~ 178 (197)
.+....+. .+++++||++|. ++.++++.+.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 55555553 379999999983 67888888887764
No 222
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=7.9e-18 Score=115.53 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=109.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCC----------ccccccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAG----------QEDYNRL 70 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G----------~~~~~~~ 70 (197)
+++....|+++|.++||||||||++++.+--.....|.+.+... .+.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 45566899999999999999999999976433334444444433 3334442 66999999 3445555
Q ss_pred cccCcCC---CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 71 RPLSYRG---ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
...|++. -.++++++|...+..-.+. .+++.+... ++|+++++||+|...... . .......+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~ 161 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVA 161 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHH
Confidence 5555554 3488899999877655443 777777777 899999999999976432 1 11112222
Q ss_pred HHh----CCC-ceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 148 KLI----GAP-AYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 148 ~~~----~~~-~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+.. ... .++..|+.++.|++++...|.+.+..
T Consensus 162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 221 16779999999999999999887654
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=6.2e-18 Score=131.19 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=105.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------CCCCC---ceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-----------TDYVP---TVFDNF-SANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-----------~~~~~---~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
.+.++|+++|+.++|||||+++++..... ....+ ..+... .....+.....++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999862100 00000 001111 1112222334567899999998887
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
......+..+|++++|+|+.+....+. ..++..+... ++|.+ +++||+|+.+... .......+...+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~~l 158 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRELL 158 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence 666677889999999999987543332 2334444433 67865 5799999964221 1112223556666
Q ss_pred HHhCC----CceEEeccCCCC----------CHHHHHHHHHHHHc
Q 036449 148 KLIGA----PAYIECSSKTQQ----------NVKAVFDAAIRVVL 178 (197)
Q Consensus 148 ~~~~~----~~~~~~sa~~~~----------~i~~l~~~i~~~~~ 178 (197)
..++. .+++++||.++. ++.++++.|.+.+.
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 66643 378999999984 67888888887654
No 224
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-17 Score=127.83 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=115.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEEC-CeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+..=|.++|+...|||||+..+...........-........ +..+ +....+.|.|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567799999999999999999998888766666665555433 3332 1234678999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH--HHHHHHHHh-CCCceEEe
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA--QGEELRKLI-GAPAYIEC 158 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 158 (197)
|+|++++|.--.+.. .-+...+. .+.|+++++||+|..+.+.. .+..+ +.--....+ +...++++
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np~--------~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANPD--------KVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCHH--------HHHHHHHHcCCCHhhcCCceEEEEe
Confidence 999999987444433 11223333 38999999999999854320 01010 000111222 22368999
Q ss_pred ccCCCCCHHHHHHHHHHHHcC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~ 179 (197)
||++|.|+++|+..+.-...-
T Consensus 151 SA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 151 SAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred eccCCCCHHHHHHHHHHHHHH
Confidence 999999999999998765443
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=2.7e-18 Score=123.31 Aligned_cols=151 Identities=15% Similarity=0.027 Sum_probs=89.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC--CC--------------C----------------CCCceeeeeeEEEEECCeEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF--PT--------------D----------------YVPTVFDNFSANVVVNGSTVN 55 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~--~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~ 55 (197)
+|+++|+.++|||||+.+++.... .. . ...++.+.....+... ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 589999999999999988863211 00 0 0001111111122233 467
Q ss_pred EEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
+.+||+||+..|.......+..+|++|+|+|++++. ..+.. .. ..... .....|+++++||+|+......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EH-ALLAR-TLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HH-HHHHH-HcCCCeEEEEEEcccccccccc
Confidence 889999999887766666778899999999999852 11111 11 22222 2223689999999999732100
Q ss_pred ccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHH
Q 036449 129 FIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVK 167 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~ 167 (197)
........++...+....+. .+++++||++|.|++
T Consensus 156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 00000111223333444443 369999999999987
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.3e-17 Score=132.31 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccC-c-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLS-Y- 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~-~- 75 (197)
+..+|+++|+|++|||||+|++.+... ..+++..+.+.........+.+ +++.|.||...+... ...+ +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 346799999999999999999997654 5788888888888888888755 669999995443311 1122 2
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++|-|+|++|-+..-.+.- ++.+. +.|++++.|++|..+... ...+..++.+..|+ |.
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltl----QLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV 141 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTL----QLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV 141 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHH----HHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence 45799999999998866554422 23333 789999999999987654 23445688899999 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++++|++|.|++++...+.+......
T Consensus 142 v~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 142 VPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEEeecCCCHHHHHHHHHHhccccc
Confidence 99999999999999999988766654
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=7.9e-18 Score=130.67 Aligned_cols=149 Identities=20% Similarity=0.166 Sum_probs=95.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCC-----------C-C-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF-----------P-T-----DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~-----------~-~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
..+.++|+++|+.++|||||+++|+.... . . .....+.+ .....+......+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 35779999999999999999999974210 0 0 00111111 1122333344678899999999
Q ss_pred ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|++++...+.. ..+..+... ++|.+ +++||+|+.+... ......++..
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~ 155 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence 8876665567788999999999875433322 333444444 67765 6899999965321 0001123566
Q ss_pred HHHHHhCC----CceEEeccCCCC
Q 036449 145 ELRKLIGA----PAYIECSSKTQQ 164 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~ 164 (197)
.+.+.++. .+++++||.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 66666653 489999999874
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=1.9e-17 Score=129.03 Aligned_cols=150 Identities=21% Similarity=0.158 Sum_probs=96.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--C---------------CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--D---------------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
+.+.++|+++|++++|||||+++++...... . ....+.+. ....+.....++.+.||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence 3577999999999999999999998642110 0 00011010 111222233567799999998
Q ss_pred ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|+..+..-+. ...+..+... +.| +++++||+|+.+... ......++..
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~ 155 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR 155 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence 887766667788999999999987643332 2334444444 678 778999999965321 0011223455
Q ss_pred HHHHHhCC----CceEEeccCCCCC
Q 036449 145 ELRKLIGA----PAYIECSSKTQQN 165 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~sa~~~~~ 165 (197)
.+.+..+. .+++++||.+|.+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhccc
Confidence 55555543 4799999998863
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=2.3e-17 Score=116.65 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEE-EEEC-CeEEEEEEEeCCCcccccc-----ccccCcCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSAN-VVVN-GSTVNLGLWDTAGQEDYNR-----LRPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~ 77 (197)
.++|+++|.+|+|||||++.+.+.........+.+. ..... ..+. .....+.+||+||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999986543322222211 00000 0111 1123578999999753221 22233667
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC--CcccHHH----HHHHHHH--
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQ----GEELRKL-- 149 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~-- 149 (197)
+|+++++.+. ++......|+..+... +.|+++|+||+|+....... ..+.. .....++ .......
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQR-SKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhc-cccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888442 2333335667777766 68999999999995422100 00000 0011111 1111222
Q ss_pred hCCCceEEeccC--CCCCHHHHHHHHHHHHcCC
Q 036449 150 IGAPAYIECSSK--TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 150 ~~~~~~~~~sa~--~~~~i~~l~~~i~~~~~~~ 180 (197)
...++++.+|+. .+.++..+.+.++..+-+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 123478899998 5789999999999887654
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=6.1e-17 Score=119.15 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCC---------C-ceee-----------eeeEEEEECCeEEEEEEEeCCCccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYV---------P-TVFD-----------NFSANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~---------~-~~~~-----------~~~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
+|+++|++|+|||||+++++...-.-... . +..+ .......+....+.+++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 69999999999999999998532110000 0 0000 0111122333457888999999998
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|.......+..+|++|+|+|++++..... ..++...... ++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 87766667889999999999987643322 2344444333 7899999999998653
No 231
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.6e-16 Score=115.41 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 77 (197)
-.|-+||-|++|||||++++..-+. ...|..|+. .... ++.+++. .++.+-|+||.-+=. ......++.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG-~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG-TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc-eeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3578999999999999999997543 456666663 2323 3333332 338899999942211 111223557
Q ss_pred CcEEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 78 ADVFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+...+||+|++.+ ..++.+ +.+..++..+. .+.|.++|+||+|+.+.. .....++++...
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq 340 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQ 340 (366)
T ss_pred hceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcC
Confidence 8999999999988 666666 45544444433 688999999999995422 122456777777
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHH
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.+.++++||++++++.++++.|-+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 6459999999999999999987653
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=99.72 E-value=2.3e-16 Score=122.39 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=103.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC---C---C-----------CCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP---T---D-----------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~---~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
.+.++|+++|+.++|||||+++|+..... . . ....+.+ .....+.....++.+.||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence 56799999999999999999999863110 0 0 0111111 11222322345677999999988
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGEE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
|.......+..+|++++|+|+.++..-+. ..++..+... +.|.+ +++||+|+.+... .......+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence 87766677889999999999987643332 2444445444 68876 5899999964221 00011223444
Q ss_pred HHHHhCC----CceEEeccCCCC----------CHHHHHHHHHHHHc
Q 036449 146 LRKLIGA----PAYIECSSKTQQ----------NVKAVFDAAIRVVL 178 (197)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~~----------~i~~l~~~i~~~~~ 178 (197)
+....+. .+++++||.++. ++..+++.|.+.+.
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 4444432 479999999875 56778888777543
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=9.3e-17 Score=118.29 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCC-------------CC------CceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTD-------------YV------PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
+|+++|++|+|||||+++++...-... +. ..+.......+.+.+ .++.+|||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974221100 00 000011112223333 677899999998888
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
..+...++.+|++|+|+|.++...-.. ..++..+... +.|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 888888999999999999988654332 2344444444 789999999999865
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.8e-16 Score=113.34 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEEC--------CeEEEEEEEeCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVVN--------GSTVNLGLWDTA 62 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~~--------~~~~~~~i~D~~ 62 (197)
+|+++|+.++|||||+.+|+...- ........ +... .....+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999875431 11100000 0000 0011222 346889999999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
|+..|......++..+|++++|+|++++...+.. ..+...... +.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence 9999998888899999999999999988766543 223333322 68999999999985
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=1.2e-16 Score=126.31 Aligned_cols=158 Identities=16% Similarity=0.082 Sum_probs=93.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCC----------CCce-------------------eeee-eEEEEEC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDY----------VPTV-------------------FDNF-SANVVVN 50 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~----------~~~~-------------------~~~~-~~~~~~~ 50 (197)
....++|+++|+.++|||||+.+++...- .... ..+. +... .....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999998874321 1100 0000 0000 0111122
Q ss_pred CeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 51 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~ 130 (197)
....++.+|||||++.|.......+..+|++++|+|++.+..-+.. .. ...+... ...++++++||+|+...+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~-~~l~~~l-g~~~iIvvvNKiD~~~~~~--- 177 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RH-SFIATLL-GIKHLVVAVNKMDLVDYSE--- 177 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HH-HHHHHHh-CCCceEEEEEeeccccchh---
Confidence 2345788999999988876555557899999999999876432221 11 1112222 1247899999999964221
Q ss_pred CCCCCCcccHHHHHHHHHHhC---CCceEEeccCCCCCHHHH
Q 036449 131 DHPGAVPISTAQGEELRKLIG---APAYIECSSKTQQNVKAV 169 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~l 169 (197)
........+...+....+ ..+++++||++|.|++++
T Consensus 178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000011122233333333 237999999999999764
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=2.1e-16 Score=123.91 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=99.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCC--CC------------------------CCCCce---eeee-eEEEEECCe
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF--PT------------------------DYVPTV---FDNF-SANVVVNGS 52 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~------------------------~~~~~~---~~~~-~~~~~~~~~ 52 (197)
..+.++|+++|+.++|||||+.+++...- .. +..+.. +... .....+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35679999999999999999988874211 10 000000 0000 011122334
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~ 125 (197)
...+.++|+|||++|.......+..+|++|+|+|+++..- + ... .......... ++| +++++||+|+...
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence 5678899999999999888888999999999999987410 1 122 2222223233 564 7889999998621
Q ss_pred cccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449 126 KQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~ 168 (197)
... ........++.+.+.+..+. .+|+++||.+|+|+.+
T Consensus 161 ~~~----~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYS----KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhh----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 100 00011224556677776663 3799999999999853
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=1.9e-16 Score=124.75 Aligned_cols=150 Identities=23% Similarity=0.192 Sum_probs=95.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC------CCCC-----CCce---eeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF------PTDY-----VPTV---FDNF-SANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~------~~~~-----~~~~---~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
.+.++|+++|+.++|||||+++|+.... ...+ .+.. +... .....+......+.++|+||++.|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 5679999999999999999999985211 1100 0000 1010 1111122233567899999999987
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
......+..+|++++|+|+.+....+. ..++..+... ++| +++++||+|+.+... ......++...+.
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~~l 227 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRELL 227 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHHHH
Confidence 776667788999999999987754433 2344444444 678 778999999965321 0111223445555
Q ss_pred HHhC----CCceEEeccCCCC
Q 036449 148 KLIG----APAYIECSSKTQQ 164 (197)
Q Consensus 148 ~~~~----~~~~~~~sa~~~~ 164 (197)
...+ ..+++++|+.++.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HhcCCCcCcceEEEEEccccc
Confidence 5542 2379999998874
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=9.3e-17 Score=124.97 Aligned_cols=153 Identities=18% Similarity=0.107 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC--CCCC----------CCce-------------------eeee-eEEEEECCeEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDY----------VPTV-------------------FDNF-SANVVVNGSTV 54 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~----------~~~~-------------------~~~~-~~~~~~~~~~~ 54 (197)
+||+++|+.++|||||+.+++...- .... ..+. +... .....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999998874321 1100 0000 0000 01111222335
Q ss_pred EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC
Q 036449 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG 134 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 134 (197)
.+.+|||||++.|.......+..+|++++|+|+..+..-+.. .....+... ...++++++||+|+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~------~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDE------E 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchH------H
Confidence 788999999998876666678899999999999876433322 111222222 1246889999999964321 0
Q ss_pred CCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHH
Q 036449 135 AVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKA 168 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~ 168 (197)
......++...+.+..+. .+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000112233344444443 2699999999999885
No 239
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=113.65 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=113.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----c---cccccCc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----N---RLRPLSY 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~---~~~~~~~ 75 (197)
....|+|.|.|+||||||++.+..-+. ...|+.|+......++..++ .++|++||||.-+- . ......+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 446799999999999999999998665 46788888766666666655 56789999993211 1 1111112
Q ss_pred C-CCcEEEEEEeCCC--chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 76 R-GADVFILAFSLIS--KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 76 ~-~~~~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+ -.++++|++|.+. .-+.+.- ..++..+...+. .|+++|.||+|...... .+++......-+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~------------~~~~~~~~~~~~~ 310 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK------------LEEIEASVLEEGG 310 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH------------HHHHHHHHHhhcc
Confidence 2 3678999999964 4455554 577788887775 89999999999975432 2333333444454
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.....+++..+.+++.+-..+...+.+.
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 4577899999999999988888775543
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=5.2e-16 Score=121.66 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=100.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC------CCCC----------C-CCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN------TFPT----------D-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~------~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
.+.++|+++|+.++|||||+++|.+. .... + ....+.+ .....+.....++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence 56799999999999999999998622 1000 0 0111111 11222333345778999999988
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
|.......+..+|++++|+|++++..-+. ...+..+... ++| +++++||+|+.+... .......+..+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~ 205 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE 205 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence 87655556677999999999987643332 2334444444 688 578899999964221 00011123334
Q ss_pred HHHHhCC----CceEEeccC---CCCC-------HHHHHHHHHHHHc
Q 036449 146 LRKLIGA----PAYIECSSK---TQQN-------VKAVFDAAIRVVL 178 (197)
Q Consensus 146 ~~~~~~~----~~~~~~sa~---~~~~-------i~~l~~~i~~~~~ 178 (197)
+....+. .+++++|+. ++.| +.++++.|.+.+.
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 4443322 378888875 4544 7788888877654
No 241
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.70 E-value=7.9e-18 Score=115.48 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCcccccccccc---CcCCCcE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPL---SYRGADV 80 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~ 80 (197)
+.-.|+++|+.|+|||+|+..|..+.......+. ..... ..+ ......+.++|+|||++.+..... ++..+.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3457999999999999999999998655443333 11111 111 122235779999999988764333 4778999
Q ss_pred EEEEEeCCC-chhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCC
Q 036449 81 FILAFSLIS-KASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 81 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~ 125 (197)
+|||+|.+. .....++...++..+.... ...|++|++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999974 4556666566666666543 57999999999999653
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=1e-15 Score=113.19 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=91.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCcee-eeeeEEEEECCeEEEEEEEeCCCcccc------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD----------YVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDY------ 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 67 (197)
-.++|+++|.+|+|||||++++++..+... ..+|.. ......+..++..+.+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999998876433 233332 223344455677789999999993221
Q ss_pred --------------------ccccccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 68 --------------------NRLRPLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 68 --------------------~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
...+...+. .+|+++++++.+.. ....+ ..++..+.. ++|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence 111212333 46788888887642 22222 244455543 589999999999965
Q ss_pred CcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
... ........++.+..++. +++......
T Consensus 158 ~~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~~ 186 (276)
T cd01850 158 PEE--------LKEFKQRIMEDIEEHNI-KIYKFPEDE 186 (276)
T ss_pred HHH--------HHHHHHHHHHHHHHcCC-ceECCCCCc
Confidence 322 01234556677777777 677766543
No 243
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=8.6e-17 Score=114.99 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=110.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CC-ceeeeeeEEEEECCeEEEEEEEeCCCccc-------ccccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VP-TVFDNFSANVVVNGSTVNLGLWDTAGQED-------YNRLRPL 73 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 73 (197)
....++|+++|..|+|||||+|+++.+...+-. .+ +..........+++ -.+.+||+||-.+ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 456799999999999999999999975543221 11 11111111122333 3577999999543 6677777
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc----c-cccCCCCCCcccHHHH---HH
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK----Q-FFIDHPGAVPISTAQG---EE 145 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~----~-~~~~~~~~~~~~~~~~---~~ 145 (197)
++...|.++++.+..|+.---+. +.|.+.+... -+.++++++|.+|....- . .....+.......+.+ .+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999887544443 3444444333 258999999999986542 1 0111111122222222 22
Q ss_pred HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 146 LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 146 ~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+.+. ..|++..+...+.|++++...+++.+...
T Consensus 192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 3322 34788899999999999999999977643
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=2.2e-16 Score=130.54 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=82.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCC--------C-----C-------CCCceeeeeeEEEEECCeEEEEEEEeCC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP--------T-----D-------YVPTVFDNFSANVVVNGSTVNLGLWDTA 62 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~-----~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 62 (197)
..+..+|+++|+.|+|||||+++++..... . + +..|.... ...+.+. .+.+++||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~~--~~~i~liDtP 81 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDWD--NHRINLIDTP 81 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEEC--CEEEEEEECC
Confidence 456789999999999999999999853210 0 0 01111100 1122233 4778899999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|+.+|...+..++..+|++++|+|.+++...+.. ..| ..+... +.|+++++||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 9999888888889999999999999988766544 333 334443 7899999999998753
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=2.3e-16 Score=123.73 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=97.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------------------------CCCCce---eeee-eEEEEECCe
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVNGS 52 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------------------------~~~~~~---~~~~-~~~~~~~~~ 52 (197)
+.+.++|+++|+.++|||||+.+++.. .... +..+.. +... .....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 357799999999999999999988752 1110 000000 0000 011122334
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccC-
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IILVGTKLDLRD- 124 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~- 124 (197)
...+.++|+||+.+|.......+..+|++++|+|++.+.- + ... ...+..+... ++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence 4678899999999998877778889999999999987531 1 111 2222333333 566 678999999532
Q ss_pred -CcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449 125 -DKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~ 168 (197)
... .......++...+....+. .+++++|+.+|+|+.+
T Consensus 161 ~~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111 0111222344444444443 3799999999999864
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.1e-15 Score=121.79 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=78.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCC----------Cce----------eeee-eEEEEECCeEEEEEEEeCC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV----------PTV----------FDNF-SANVVVNGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----------~~~----------~~~~-~~~~~~~~~~~~~~i~D~~ 62 (197)
.+.-+|+++|+.++|||||+.+++...-..... .+. +..+ .....+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 355689999999999999999997421110000 000 0011 1112223334778899999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
|+..|.......+..+|++|+|+|+++...... ..++...... ++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 999888766667889999999999988643322 3444444433 799999999999864
No 247
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1e-15 Score=113.27 Aligned_cols=149 Identities=21% Similarity=0.197 Sum_probs=93.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----ce-----------e---eeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVP-----TV-----------F---DNFSANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~-----~~-----------~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
+|+++|++|+|||||+++++.......... +. + ......+.+++ +.+++|||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999875332111000 00 0 00011222333 678899999998887
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
......+..+|++++|+|.++....... ..+..+... +.|.++++||+|...... .+....+.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~~~------------~~~~~~l~~ 142 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERADF------------DKTLAALQE 142 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCCCH------------HHHHHHHHH
Confidence 7777788999999999999987655433 223334433 789999999999865321 233344555
Q ss_pred HhCCCceEE--eccCCCCCHHHHHHHHHH
Q 036449 149 LIGAPAYIE--CSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 149 ~~~~~~~~~--~sa~~~~~i~~l~~~i~~ 175 (197)
.++. +++. +...++.++..+.+.+..
T Consensus 143 ~~~~-~~~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 143 AFGR-PVVPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred HhCC-CeEEEEecccCCCceeEEEEcccC
Confidence 5554 3433 445555555444444433
No 248
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.7e-16 Score=120.79 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=112.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++..-|-++|+..-|||||+..|.+.........-+....... +..+ ..-.++|.|||||..|..++.....-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4667799999999999999999998877655555544444322 2222 2256789999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHH---HHHHHHHHhCCCceEEe
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA---QGEELRKLIGAPAYIEC 158 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 158 (197)
+|+.+.|+---+.. +.|.... .+.|++++.||+|..+.+. ..+..+ ......+--|.++++++
T Consensus 230 LVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~p--------ekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGANP--------EKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred EEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCCH--------HHHHHHHHHcCccHHHcCCceeEEEe
Confidence 99999987433333 2233222 4899999999999865331 001111 11112222244578999
Q ss_pred ccCCCCCHHHHHHHHHHHHc
Q 036449 159 SSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~ 178 (197)
||++|.|++.|-+.+.-++.
T Consensus 297 SAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAE 316 (683)
T ss_pred ecccCCChHHHHHHHHHHHH
Confidence 99999999999998876543
No 249
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-15 Score=117.93 Aligned_cols=165 Identities=23% Similarity=0.191 Sum_probs=117.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CC---------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PT---------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
++.=++.++-+...|||||..+++.... .. +.--|........+..++..+.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3455789999999999999999885322 11 111111111111222346779999999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.......+.-|+++|+|+|++.+-.-+.. ..++..++. +..+|.|.||+|+...+. ..-..+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 999988899999999999999998777776 344444433 588999999999987542 0112233344
Q ss_pred HHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 147 RKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 147 ~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
....+. +.+.+||++|.|++++++.|++.+..+..
T Consensus 205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 444444 78999999999999999999998877643
No 250
>COG2262 HflX GTPases [General function prediction only]
Probab=99.68 E-value=2e-15 Score=113.58 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=110.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 73 (197)
+....|.++|-.++|||||+|++.+... ..+...++-+.....+.+.+ ...+.+.||.|-- .|.+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4568899999999999999999996443 34445555555555555553 2345689999932 2333222
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
-...+|+++.|+|++++...+.+ ......+.... .+.|+++|.||+|+.... ..........
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~- 330 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS- 330 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence 23479999999999999766666 55556666553 479999999999986532 1112222222
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+..+.+||++|.|++.+.+.|...+...
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 2589999999999999999999987743
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=5.8e-15 Score=107.81 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=108.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSY 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 75 (197)
+..-+++++|.|.+|||||++++.+... ...|+.|+.......+.+++ .++|+.|+||.-.- ........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3456899999999999999999998665 46677777666666777777 77889999984211 13344568
Q ss_pred CCCcEEEEEEeCCCchh-HHHHHHHHH-------------------------------------------HHH-------
Q 036449 76 RGADVFILAFSLISKAS-YENVSKKWI-------------------------------------------PEL------- 104 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s-~~~~~~~~~-------------------------------------------~~i------- 104 (197)
++||++++|+|+..... .+.+..++. ...
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999986543 222211111 000
Q ss_pred ---------------hhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHH
Q 036449 105 ---------------KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 105 ---------------~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l 169 (197)
.....-+|.+.|.||.|+.. .++...+.+.. ..+.+||..+.|++++
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L 280 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDEL 280 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHH
Confidence 00000128899999999854 34444444443 6889999999999999
Q ss_pred HHHHHHHHcC
Q 036449 170 FDAAIRVVLQ 179 (197)
Q Consensus 170 ~~~i~~~~~~ 179 (197)
.+.|.+.+.-
T Consensus 281 ~e~i~~~L~l 290 (365)
T COG1163 281 KERIWDVLGL 290 (365)
T ss_pred HHHHHHhhCe
Confidence 9999987654
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=4.6e-16 Score=127.39 Aligned_cols=156 Identities=20% Similarity=0.139 Sum_probs=93.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC----------CCCceeeee--------------------eEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD----------YVPTVFDNF--------------------SANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~----------~~~~~~~~~--------------------~~~~~~~~ 51 (197)
...++|+++|++++|||||+++++...- ... ...++.+.+ .....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 5679999999999999999999885321 100 011100000 00111122
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~ 131 (197)
....+.++||||++.|.......+..+|++++|+|++.+..-+.. .....+... ...++++++||+|+.+...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~---- 174 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ---- 174 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh----
Confidence 234677999999988766555567899999999999876433222 111222222 1357889999999964221
Q ss_pred CCCCCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHH
Q 036449 132 HPGAVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKA 168 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~ 168 (197)
........+...+....+. .+++++||++|.|+.+
T Consensus 175 --~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 --EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000111233344445554 2589999999999874
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=7.4e-15 Score=103.86 Aligned_cols=164 Identities=18% Similarity=0.161 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-----------LRP 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 72 (197)
++|+++|.+|+|||||+|++++....... .+.+.........+.+ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 58999999999999999999987543221 1222222233334455 4677999999543321 112
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
....+.|++++|+++.+ .+-.+ ...+..+...+. -.+++++.|+.|....... ...........+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~----~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL----EDYLENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH----HHHHHhccHHHHHHHHH
Confidence 23467899999999987 33222 344555555432 2578899999997653210 00000112445666666
Q ss_pred hCCCceEEec-----cCCCCCHHHHHHHHHHHHcCC
Q 036449 150 IGAPAYIECS-----SKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 150 ~~~~~~~~~s-----a~~~~~i~~l~~~i~~~~~~~ 180 (197)
.+. .++..+ +..+.++.+|++.|.+++.++
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 665 555554 445789999999999988763
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=1.5e-15 Score=98.52 Aligned_cols=105 Identities=27% Similarity=0.277 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccccCcC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPLSYR 76 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 76 (197)
+|+++|.+|+|||||++++.+... .....+++.........+++.. +.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999997533 2333344433333444556644 459999995321 111222347
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK 119 (197)
.+|++++|+|.+++.. +.. ..++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999877422 222 35555554 47999999998
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.66 E-value=1.7e-15 Score=118.67 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=102.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCC---CCCC--CCceeeeeeE------------EE--EEC------------C
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF---PTDY--VPTVFDNFSA------------NV--VVN------------G 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~--~~~~~~~~~~------------~~--~~~------------~ 51 (197)
....++|.++|+...|||||+.+|..... .++. --|...-|.. .. ... +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45679999999999999999999985322 1100 0000000000 00 000 0
Q ss_pred ----eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 52 ----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
....+.++|+||++.|.......+..+|++++|+|++++ ...+.. +.+..+... .-.++++|.||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCHH
Confidence 023678999999999887766777899999999999874 222222 222222222 124689999999996532
Q ss_pred ccccCCCCCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 127 QFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
. .....++.+.+.... ...+++++||++|.|+++|++.|.+.+..
T Consensus 188 ~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 Q--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred H--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 1 001122333333221 22389999999999999999999976544
No 256
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=9.5e-15 Score=109.66 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=53.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceee-eeeEEE--------------------EECC-eEEEEEEEeCCCc-
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFD-NFSANV--------------------VVNG-STVNLGLWDTAGQ- 64 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~-~~~~~~--------------------~~~~-~~~~~~i~D~~G~- 64 (197)
|+++|.++||||||++++.+.... .+++.++.+ ...... ..++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 233333311 111111 1222 3467999999997
Q ss_pred ---ccccccccc---CcCCCcEEEEEEeCC
Q 036449 65 ---EDYNRLRPL---SYRGADVFILAFSLI 88 (197)
Q Consensus 65 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 88 (197)
+++..+-.. .++++|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334444334 388999999999997
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=6.2e-15 Score=121.83 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=80.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-----CC--------------CCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-----DY--------------VPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
.+.-+|+++|+.++|||||+++++...-.. .. ..++.......+.+++ ..+.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 345699999999999999999997422110 00 0111111122233444 67889999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
.+|.......+..+|++++|+|++++...+.. .++..+... +.|+++++||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 98877777788999999999999987655543 333444444 689999999999975
No 258
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2e-15 Score=113.56 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=100.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCC---------------C---------CCCce---eeee-eEEEEECC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSN--TFPT---------------D---------YVPTV---FDNF-SANVVVNG 51 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~---------------~---------~~~~~---~~~~-~~~~~~~~ 51 (197)
+.++.++++++|+..+|||||+-+|+.. .+.. + ...+. +.+. .....+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 4578899999999999999999877632 1111 0 00000 0011 11122333
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---HH--HHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE--NVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
..+.++++|+||+..|-........+||+.|+|+|..+.+- |. .. .+-...+.....-..+|++.||+|+.+++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQ-trEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQ-TREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCc-hhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 45679999999999999888888999999999999988731 10 00 01111122222234678899999998765
Q ss_pred ccccCCCCCCcccHHHHHHHHHHhCCC----ceEEeccCCCCCHHH
Q 036449 127 QFFIDHPGAVPISTAQGEELRKLIGAP----AYIECSSKTQQNVKA 168 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~sa~~~~~i~~ 168 (197)
+ ..++.-..+...+.+..|.. +|+++|+.+|+|+.+
T Consensus 162 e------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 E------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred H------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 3 11111223333455555543 599999999998764
No 259
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=9.8e-16 Score=101.13 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.=|++++|-.++|||||++.+....... +.||.-.. +....+.+ +.++.+|.+|+..-+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 45689999999999999999988776533 34444211 12334455 7888999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh------C------
Q 036449 85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI------G------ 151 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------ 151 (197)
+|+-|.+.+.+....+-..+.... .+.|+++.+||+|.+... ++++.+....-+ +
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhcccccccccC
Confidence 999999999988555544444433 689999999999997642 222222111111 1
Q ss_pred --C--CceEEeccCCCCCHHHHHHHHHHH
Q 036449 152 --A--PAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 152 --~--~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
. ...+-||...+.+.-+.|.|+.+.
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1 123567888788877777777654
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.62 E-value=7.4e-15 Score=117.21 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------C--CCCce----------eeee-eEEEEECCeEEEEEEEeCC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------D--YVPTV----------FDNF-SANVVVNGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------~--~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~ 62 (197)
.+.-+|+++|++++|||||+.+++.. .... . ...+. +..+ .....++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998632 1110 0 00011 1111 1112233445788899999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
|+..|.......+..+|++|+|+|.++..... ...++...... +.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR--TRKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECccccC
Confidence 99888776666788999999999998753222 23444444433 789999999999864
No 261
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.61 E-value=1.4e-15 Score=95.86 Aligned_cols=137 Identities=24% Similarity=0.174 Sum_probs=97.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----ccccccccCcCCCcEEEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~~~i~ 83 (197)
||+++|..|+|||||.+++.+...-.. .|. -+.+..+ . .+||||.- .+.+........+|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ------Ave~~d~-~---~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ------AVEFNDK-G---DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccc------eeeccCc-c---ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999988653221 111 1112111 1 58999943 333333445678999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 163 (197)
|-.++++++.-.. . +.... ..|+|-|++|.|+.+. .+.+..+++..+-|..++|++|+.++
T Consensus 71 v~~and~~s~f~p--~----f~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP--G----FLDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc--c----ccccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999998654322 1 22222 3569999999999864 34567788889999989999999999
Q ss_pred CCHHHHHHHHHH
Q 036449 164 QNVKAVFDAAIR 175 (197)
Q Consensus 164 ~~i~~l~~~i~~ 175 (197)
.|+++++..|..
T Consensus 132 ~gv~~l~~~L~~ 143 (148)
T COG4917 132 QGVEELVDYLAS 143 (148)
T ss_pred ccHHHHHHHHHh
Confidence 999999998764
No 262
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=106.39 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=105.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCcE
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGADV 80 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ 80 (197)
|-++|-|++|||||++.+..-+. ..+|+.|+..-.-..+.+. ..-.+.+-|.||.-+=. ......++.+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 67899999999999999986543 5677777743332233332 22357799999942211 111123456789
Q ss_pred EEEEEeCCCchh---HHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 81 FILAFSLISKAS---YENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 81 ~i~v~d~~~~~s---~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++.|+|++..+. .++. ..+...+..+. .+.|.+||+||+|+....+ ........+.+..+...
T Consensus 241 L~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~~ 309 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWEV 309 (369)
T ss_pred eEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCCc
Confidence 999999986543 4443 45555565554 4889999999999654322 22233344444445433
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.+||.++.|++++...+.+.+....
T Consensus 310 ~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 333999999999999999999887765
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.7e-14 Score=118.09 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=80.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--------C-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--------T-----------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
.+..+|+++|+.++|||||+++++...-. . .....+.......+.+++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 46778999999999999999999752110 0 001111111122233444 67889999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
..|...+...+..+|++|+|+|++++...+.. ..+..+... +.|+++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 88877777788899999999999887544433 334444444 689999999999874
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=2.9e-14 Score=113.42 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=74.0
Q ss_pred EEEEEeCCCcccc-----ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449 55 NLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 55 ~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~ 129 (197)
++.|.||||.... .......+..+|+++||+|.++..+..+. .+...+.....+.|+++|+||+|+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree-- 306 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS-- 306 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc--
Confidence 4678999996432 22233468899999999999876554442 44555555433369999999999853221
Q ss_pred cCCCCCCcccHHHHHHHHHH------hCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 130 IDHPGAVPISTAQGEELRKL------IGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
...+....+... .....++++||+.|.|++.+++.|.+.
T Consensus 307 --------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 --------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred --------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 123333333221 123368999999999999999999873
No 265
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.60 E-value=2.5e-14 Score=120.66 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=96.1
Q ss_pred CCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECC-e---------------EEEEEEEeCCCccccccccccCcCCCc
Q 036449 17 VGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNG-S---------------TVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 17 ~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---------------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
++||||+.++.+.........-+....... +..+. . .-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999998877665555443333222 11211 0 012789999999999888777888899
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc---HHHHHH-----------
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS---TAQGEE----------- 145 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~----------- 145 (197)
++++|+|++++-.-+.. ..+..+... +.|+++|+||+|+.+........+....+. ....++
T Consensus 552 ivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999999874222221 222333333 689999999999964321000000000000 000000
Q ss_pred HH-------------HHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 146 LR-------------KLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 146 ~~-------------~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++ +-.+..+++++||++|.|+++|+..|.....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11 1123447899999999999999998875443
No 266
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.9e-15 Score=101.99 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=104.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcC---CCcEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFI 82 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i 82 (197)
.-.|+++|+.+||||+|+-.+..+.....+++.. .......+.... ..++|.|||++.+.-...++. .+-+++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie--pn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE--PNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeec--cceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 3479999999999999999999885444322222 222233333322 679999999988765555444 688999
Q ss_pred EEEeCC-CchhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCccc--c------------cCCC----------C
Q 036449 83 LAFSLI-SKASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQF--F------------IDHP----------G 134 (197)
Q Consensus 83 ~v~d~~-~~~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~--~------------~~~~----------~ 134 (197)
||+|.. ......++...++..+... ...+|+++++||.|+.-.... + .... .
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 999984 3444556656667776655 257899999999998632211 0 0000 0
Q ss_pred CCcccHHHH--HHHHHHh-CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 135 AVPISTAQG--EELRKLI-GAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 135 ~~~~~~~~~--~~~~~~~-~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.....-.++ .+|+.-. ....|.++|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 000111111 1222211 1236889999988 899999998765
No 267
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=4.3e-14 Score=106.68 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=85.7
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCc
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D 121 (197)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+-..+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999874 345555344444444433 6899999999999
Q ss_pred ccCCcccc-------cCCCCCCcccHHHHHHHHH-----Hh---CC-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 122 LRDDKQFF-------IDHPGAVPISTAQGEELRK-----LI---GA-PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 122 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----~~---~~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+..+.-.. .+..+. ..+.+.+..+.. .. +. .....++|.+..++..+|+.+...+...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 86543111 111110 123333333222 21 11 1235588999999999999988877654
No 268
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.2e-14 Score=109.93 Aligned_cols=168 Identities=24% Similarity=0.237 Sum_probs=111.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN---------RLRPL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 73 (197)
..++|+++|+|++|||||+|.|.+.. .....+.|+.+-....+.++| +.+.+.||+|..+-. .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 45899999999999999999999765 456778888888888888888 566799999965411 11123
Q ss_pred CcCCCcEEEEEEeC--CCchhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 74 SYRGADVFILAFSL--ISKASYENVSKKWIPELKHYA-------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 74 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~i~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.+..+|++++|+|+ ++-++-..+ ...+....... ...+++++.||.|+...-. +.....+....+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~----~~~~~~~~~~~~- 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP----EMTKIPVVYPSA- 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc----cccCCceecccc-
Confidence 46679999999999 333333333 23333332222 1378999999999976411 000000111111
Q ss_pred HHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 145 ELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 145 ~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
... -......++|+++++|++.|.+.+.+.+.....
T Consensus 419 ~~~--~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 419 EGR--SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ccC--cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 111 122245669999999999999999987765433
No 269
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-14 Score=115.83 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-------------CC----eEEEEEEEeCCCcccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-------------NG----STVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~i~D~~G~~~~ 67 (197)
+..-||++|+..+|||-|+..+.+........+.+...+..++.- .+ ..--+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345699999999999999999988666554444442222222110 00 1122669999999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC---CcccH----
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA---VPIST---- 140 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~---- 140 (197)
..++......||++|+|+|+..+...+.+ .-+..++.+ +.|+||++||+|...........+-. .....
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999987554444 334566666 89999999999987543321110000 00000
Q ss_pred -------HHHHHHHHH-hC------------CCceEEeccCCCCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449 141 -------AQGEELRKL-IG------------APAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL 197 (197)
Q Consensus 141 -------~~~~~~~~~-~~------------~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
....+|+.+ ++ .+.++++||.+|+||-+|+.+|+++......++.. -...-.|+||
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~-y~~ev~cTVl 705 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA-YVDEVQCTVL 705 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh-hhhheeeEEE
Confidence 011122211 11 12458899999999999999999987766544432 3344445543
No 270
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=2e-13 Score=104.35 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=116.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCC---------------CCCCcee-eeeeEEEEE-CCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPT---------------DYVPTVF-DNFSANVVV-NGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~~~~-~~~~~~~~~-~~~~~~~~i~D~~G~ 64 (197)
++.=+..++-+-..|||||..+++... +.. +.--|+. ....-.+.. +|..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 344568889999999999999987532 111 1111111 111112222 567899999999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
-+|.......+..|.++++|+|++.+-.-+.+ ...+..+.. +.-++-|.||+||...+. ....+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp------------ervk~ 150 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP------------ERVKQ 150 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH------------HHHHH
Confidence 99988888888899999999999998777766 344444443 478888999999977432 23334
Q ss_pred HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 145 ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 145 ~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
+..+-.|.. ..+.+||++|.|++++++.|++.+-.+..
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 555555542 47899999999999999999999877653
No 271
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.55 E-value=4.1e-13 Score=104.83 Aligned_cols=165 Identities=24% Similarity=0.329 Sum_probs=121.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
+..+.+++.|+|+.++|||.+++.+.++.+...+..+....+. ..+...+....+.+-|.+-. ....+...- ..||.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3467899999999999999999999999888766666654443 33444566666777777754 222222222 67999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+.++||.+++.+|... ...+..-... ...|+++|++|+|+.+..+ ....+..+++++++..+.+..|+
T Consensus 499 ~~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~ 566 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISS 566 (625)
T ss_pred EEEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeecc
Confidence 9999999999999987 4444433333 5899999999999977543 11222268999999988888998
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+.... .++|.+|+.++..+.
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 86434 899999999988876
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=2.2e-13 Score=112.63 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=72.6
Q ss_pred EcCCCCCHHHHHHHHhhCCCC--C--CC--CCceee-------------eeeEEEEECCeEEEEEEEeCCCccccccccc
Q 036449 12 VGDGAVGKTCLLISYTSNTFP--T--DY--VPTVFD-------------NFSANVVVNGSTVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 12 ~G~~~~GKstli~~~~~~~~~--~--~~--~~~~~~-------------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 72 (197)
+|+.++|||||+++++...-. . .. ..+..+ .....+.+.+ +.+.+|||||+..|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999643211 0 00 001100 1111233333 6788999999988877777
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
..+..+|++++|+|.++....... .++..+... +.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 788899999999999987665543 333333333 789999999999864
No 273
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.54 E-value=1.8e-13 Score=100.20 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC----cEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~~i 82 (197)
-+|+|+|..|+||||||.++.+..-...-....+.+....-...+...++.+|-..|...+..+....+... .++|
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 479999999999999999998765332222222222222222333446788999989766555554444432 3889
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC------------------------------------------------------
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA------------------------------------------------------ 108 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~------------------------------------------------------ 108 (197)
++.|++++...-+..+.|..-+....
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL 212 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL 212 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence 99999998554444466655444331
Q ss_pred --------CCCCEEEEeeCCcccCCcccccC-CCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 109 --------PGVPIILVGTKLDLRDDKQFFID-HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 109 --------~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
-++|++||++|+|...--....+ ............++|+..+|. ..|.+|+++..|++-+...|++..+.
T Consensus 213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 02489999999998432110000 011122334567899999999 89999999999999999999999887
Q ss_pred CC
Q 036449 180 PP 181 (197)
Q Consensus 180 ~~ 181 (197)
..
T Consensus 292 ~~ 293 (473)
T KOG3905|consen 292 FP 293 (473)
T ss_pred cc
Confidence 53
No 274
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=1.7e-13 Score=113.28 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=79.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--C-----------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--T-----------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
.+..+|+++|+.++|||||+++++...-. . .....+.+.....+.+.+ ..+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 45679999999999999999999742110 0 011111111122333444 67889999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
..|.......+..+|++++|+|+..+...+.. ..+..+... +.|.++++||+|+...
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88766666678889999999999877555443 334444444 6899999999999753
No 275
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.9e-13 Score=99.88 Aligned_cols=170 Identities=19% Similarity=0.220 Sum_probs=109.5
Q ss_pred CCC-CceeEEEEEcCCCCCHHHHHHHHhhCC----CCCCCCCcee-----eeeeEEEE------ECCeEEEEEEEeCCCc
Q 036449 1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNT----FPTDYVPTVF-----DNFSANVV------VNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~----~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~i~D~~G~ 64 (197)
|+. +..+++.++|+..+|||||.+++..-. |.....++.. ..++.... ..+..+++.++|+||+
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 544 456999999999999999999987532 3332222221 11111111 1456788999999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
...-+.......-.|..++|+|+..+...+.+....+..+.. ...++|.||.|..++++ ...-....+.
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~lpE~q-------r~ski~k~~k 149 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVLPENQ-------RASKIEKSAK 149 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccccchh-------hhhHHHHHHH
Confidence 654443333333457889999999987777764444544443 35688889999877643 0011122333
Q ss_pred HHHHHh------CCCceEEeccCCC----CCHHHHHHHHHHHHcCCC
Q 036449 145 ELRKLI------GAPAYIECSSKTQ----QNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 145 ~~~~~~------~~~~~~~~sa~~~----~~i~~l~~~i~~~~~~~~ 181 (197)
+..+.+ +..|++++||+.| .++.++.+.|..++.++.
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 333332 3358999999999 788888888888887764
No 276
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=1.6e-14 Score=110.89 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=117.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----ccc-----cc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLR-----PL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~-----~~ 73 (197)
+..-.++++|-+++|||||++.+..... ...|..|+...+..++.+.. ..++++||||.-+.- ... ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 4456789999999999999988886554 45677777666666655544 678899999943211 111 11
Q ss_pred CcCCCcEEEEEEeCCC--chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH---HHHHHHH
Q 036449 74 SYRGADVFILAFSLIS--KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA---QGEELRK 148 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 148 (197)
..+-..+++|+.|++. +-|..+- -.++..|...+.|.|+|+|+||+|+....+ ++.+ ..+.+..
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~ 312 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIID 312 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHh
Confidence 1222458899999964 4555554 477888888888999999999999977543 3332 2333333
Q ss_pred HhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCchhh
Q 036449 149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185 (197)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~ 185 (197)
..+. +++++|+.+..|+-++.......++..+-+.+
T Consensus 313 ~~~v-~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 313 DGNV-KVVQTSCVQEEGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred ccCc-eEEEecccchhceeeHHHHHHHHHHHHHHHHH
Confidence 3344 89999999999999988888877766654443
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=101.29 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=103.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCC--C--------CC--CCceeee---------------eeEEEE-----
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFP--T--------DY--VPTVFDN---------------FSANVV----- 48 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~--------~~--~~~~~~~---------------~~~~~~----- 48 (197)
|.....+|.+.+|+..-||||||-+++...-. + .. ..+.+.. ...++.
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 34567799999999999999999888753210 0 00 0111110 011111
Q ss_pred ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
+.-....|.+-|||||+.|.+........||+.|+++|+-.+-.-+.-.+.++..+- .-..+++++||+||....+
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e- 156 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSE- 156 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCH-
Confidence 122335677999999999999998889999999999999655433333333333332 2357889999999987543
Q ss_pred ccCCCCCCcccHHHHHHHHHHhCCC--ceEEeccCCCCCHH
Q 036449 129 FIDHPGAVPISTAQGEELRKLIGAP--AYIECSSKTQQNVK 167 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~ 167 (197)
..+.....+-..|+.+++.. .++++||..|+|+-
T Consensus 157 -----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 -----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 11112234456788888764 58999999999864
No 278
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.51 E-value=3.3e-14 Score=93.06 Aligned_cols=113 Identities=26% Similarity=0.368 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYV-PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998887765443 3332 3333445667789999999
Q ss_pred eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
+.++.++++.+ |...+.... .+.|.++++||.|+..... +..++.. .++++|++++.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence 99999988654 666655443 5788999999999843221 2222222 45677888888
Q ss_pred CHH
Q 036449 165 NVK 167 (197)
Q Consensus 165 ~i~ 167 (197)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=1.3e-12 Score=101.06 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEE---------------------EC-CeEEEEEEEeCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VN-GSTVNLGLWDTAG 63 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G 63 (197)
++|.++|.++||||||++++.+..+. .+++.++.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999977654 3444333111111111 11 1236789999999
Q ss_pred cc----ccccccccC---cCCCcEEEEEEeCC
Q 036449 64 QE----DYNRLRPLS---YRGADVFILAFSLI 88 (197)
Q Consensus 64 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 88 (197)
.. ....+-..+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 223333344 77899999999997
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.50 E-value=2.2e-13 Score=97.52 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=73.1
Q ss_pred EEEEEEEeCCCccc-cc-----cccccC--cCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCc
Q 036449 53 TVNLGLWDTAGQED-YN-----RLRPLS--YRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~~~i~D~~G~~~-~~-----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D 121 (197)
.....++|||||-+ |. +..... .....++++|+|..+..+.......+ ..++.+. ..|+|++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence 35577999999843 21 111111 12345778888874433222111111 2333333 799999999999
Q ss_pred ccCCcccc-------------c--CCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 122 LRDDKQFF-------------I--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 122 ~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+....-.. . .+.....+......-+-.-|+....+.+||.+|.|.+++|..+.+.+.+..
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 97653211 0 111111222233333444444446789999999999999999998877653
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.50 E-value=9.4e-13 Score=100.22 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=84.0
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~ 122 (197)
+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....|-..+.... .+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5578999999999999999999999999999999974 345555344444444333 68999999999998
Q ss_pred cCCccc---c----cCCCCCCcccHHHHHH-----HHHHhC----C-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 123 RDDKQF---F----IDHPGAVPISTAQGEE-----LRKLIG----A-PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 123 ~~~~~~---~----~~~~~~~~~~~~~~~~-----~~~~~~----~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
..+.-. . .+..+. .+.+.+.. |..... . ...+.++|.+-.++..+|+.+...+...
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 653211 1 111111 22333333 222221 1 1345688999999999999888776654
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=6.3e-13 Score=98.34 Aligned_cols=119 Identities=14% Similarity=0.161 Sum_probs=71.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-------ccC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR-------PLS 74 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~ 74 (197)
...++|+++|.+|+||||++|++++.... ....+............++ ..+.+|||||..+..... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 35689999999999999999999986532 2222221111122233444 678899999965432111 111
Q ss_pred c--CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCC
Q 036449 75 Y--RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDD 125 (197)
Q Consensus 75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~ 125 (197)
+ ...|+++||..++... +.......+..+...+. -.+++++.|+.|..+.
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1 2589999996654321 11111234444444431 3578999999997643
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=8.5e-13 Score=96.09 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=73.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---c-------c
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---L-------R 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~ 71 (197)
...++|+++|.+|+|||||+|++++..... ...+++..........++ ..+.+|||||...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 456999999999999999999999875422 222333222222333445 5678999999654310 0 1
Q ss_pred ccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCc
Q 036449 72 PLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDK 126 (197)
Q Consensus 72 ~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~ 126 (197)
..++. ..|++++|..++.. .+..+ ..+++.+...+. -.++++|.||+|.....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 11222 46788888766543 22222 244555554432 24799999999997644
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.49 E-value=1.1e-12 Score=93.86 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cc----cc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RL----RP 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~ 72 (197)
++|+++|..|+||||++|.+++....... .+.+.........+++ ..+.++||||..+.. .. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 68999999999999999999987653322 1222233333446677 456799999943211 00 11
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
....+.|++++|+.+.+. +..+ ...+..+...+. -..++||.|..|........ ...........+.+.+.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~---~~l~~~~~~~l~~li~~ 152 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLE---DYLKKESNEALQELIEK 152 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHH---HHHHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccHH---HHHhccCchhHhHHhhh
Confidence 134568999999999833 3222 233333443331 23578888888876543200 00000011235667777
Q ss_pred hCCCceEEeccC------CCCCHHHHHHHHHHHHcCCC
Q 036449 150 IGAPAYIECSSK------TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 150 ~~~~~~~~~sa~------~~~~i~~l~~~i~~~~~~~~ 181 (197)
.+. .|+..+.+ ....+.+|++.|.+++.++.
T Consensus 153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 777 78887777 34578999999998887764
No 285
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.49 E-value=3e-13 Score=98.50 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=77.2
Q ss_pred cccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG 143 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
+++..+...++.++|.+++|+|++++. ++..+ ..|+..+.. .++|+++|+||+|+.+... ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence 577888888999999999999999887 78887 788877665 4899999999999965432 333444
Q ss_pred HHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449 144 EELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
..+. ..+. +++++||+++.|++++|+.+.+
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4443 4676 8999999999999999998764
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.3e-13 Score=114.37 Aligned_cols=117 Identities=18% Similarity=0.065 Sum_probs=78.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------CCC-------CCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-----------TDY-------VPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-----------~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~ 64 (197)
.+.-+|+++|+.++|||||+.+++..... .++ ..|..... ......++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999753110 011 11111111 111224556688999999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
.+|.......+..+|++|+|+|+.+....+.. ..+...... +.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE--TVLRQALKE--NVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH--HHHHHHHHc--CCCEEEEEEChhccc
Confidence 98887777788999999999999875433322 222222222 678899999999864
No 287
>PRK13768 GTPase; Provisional
Probab=99.49 E-value=4e-13 Score=98.39 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=72.0
Q ss_pred EEEEEeCCCcccc---ccccccC---cCC--CcEEEEEEeCCCchhHHHHHH-HHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 55 NLGLWDTAGQEDY---NRLRPLS---YRG--ADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 55 ~~~i~D~~G~~~~---~~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
.+.+||+||+.+. +..+..+ +.. ++++++++|.+...+..+... .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 4679999997653 2222222 222 789999999976554433212 222222212237999999999999764
Q ss_pred cccc-----cCC----------C--CCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 126 KQFF-----IDH----------P--GAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 126 ~~~~-----~~~----------~--~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.... ... . ...... .+..+..+..+ ..+++++|++++.|++++.++|.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLS-LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHH-HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 3210 000 0 000000 00111222334 2378999999999999999999888754
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.47 E-value=2e-12 Score=101.40 Aligned_cols=172 Identities=19% Similarity=0.267 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC---CeEEEEEEEeCCCccccccccccCcCCC----c
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN---GSTVNLGLWDTAGQEDYNRLRPLSYRGA----D 79 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~ 79 (197)
-.|+|+|..++|||||+.+|.+.. ...++.+-.|......+ ....++.+|-..|...+..+....+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 579999999999999999987543 23334433333222111 2335689999998777776666655532 3
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhh-------------------------C--------------------------
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHY-------------------------A-------------------------- 108 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------------~-------------------------- 108 (197)
.+|+|.|.+.|..+-+-...|+..++.. .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 8899999999755332223332222211 0
Q ss_pred --C----------CCCEEEEeeCCcccCCcccccC-CCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449 109 --P----------GVPIILVGTKLDLRDDKQFFID-HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 109 --~----------~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
| ++|++||++|+|....-....+ ............+.++..||+ .++.||++...+++.++..|.+
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence 0 2599999999998542110000 001111233457889999999 7888999999999999999999
Q ss_pred HHcCCCc
Q 036449 176 VVLQPPK 182 (197)
Q Consensus 176 ~~~~~~~ 182 (197)
.++...-
T Consensus 262 ~l~~~~f 268 (472)
T PF05783_consen 262 RLYGFPF 268 (472)
T ss_pred HhccCCC
Confidence 9887643
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.44 E-value=1.5e-13 Score=99.42 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=61.2
Q ss_pred EEEEEeCCCccccccccccCc--------CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCC
Q 036449 55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~ 125 (197)
.+.++|||||-++...+...- ...-++++++|.....+.......++-.+.... -+.|.+.|.||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 467999999987654443322 345588999998654432222122222222211 27999999999999762
Q ss_pred cccc--c--CCCCC--------CcccHHHHHHHHHHhCCC-ceEEeccCCCCCHHHHHHHHHHHH
Q 036449 126 KQFF--I--DHPGA--------VPISTAQGEELRKLIGAP-AYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 126 ~~~~--~--~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.... . ..... .....+...++...++.. .++++|+.+++++.+++..+.+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2000 0 00000 001112222333344555 799999999999999999987764
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=4.4e-12 Score=89.61 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=61.9
Q ss_pred EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCcccCCcccccCC
Q 036449 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI--ILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~--ivv~nK~D~~~~~~~~~~~ 132 (197)
...++++.|..--....+. -++.+|.|+|+.+.++... .+. +++.. ++++||+|+.+...
T Consensus 93 D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~----- 154 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG----- 154 (199)
T ss_pred CEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc-----
Confidence 3446777773211112111 2578999999987765322 111 13344 88999999975311
Q ss_pred CCCCcccHHHHHHHHHH-hCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 133 PGAVPISTAQGEELRKL-IGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
...+...+..+. ....+++++||++|.|++++|++|.+.+.
T Consensus 155 -----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 -----ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred -----ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 112222333332 33348999999999999999999987654
No 291
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2.9e-13 Score=94.54 Aligned_cols=165 Identities=18% Similarity=0.273 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccCcCCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----NRLRPLSYRGA 78 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 78 (197)
.=||+++|.+|+|||++-..++.+....+ ..+.+-+....+..+-| .+.+.+||++||+.+ .......+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 34899999999999999877775543221 11111112222222333 366889999999843 34667789999
Q ss_pred cEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH----HHHHHHHHHhC
Q 036449 79 DVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST----AQGEELRKLIG 151 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 151 (197)
++.|+|+|++..+-..++ ..+ ++.+-+..|...+.+..+|+|+..... +.+.. +....+....+
T Consensus 83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~--------r~~if~~r~~~l~~~s~~~~ 153 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA--------RELIFQRRKEDLRRLSRPLE 153 (295)
T ss_pred eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch--------HHHHHHHHHHHHHHhccccc
Confidence 999999999887655555 333 455555568888999999999976432 11111 22233333333
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
+ .++++|..+ +.+...+..+...+.....
T Consensus 154 ~-~~f~TsiwD-etl~KAWS~iv~~lipn~~ 182 (295)
T KOG3886|consen 154 C-KCFPTSIWD-ETLYKAWSSIVYNLIPNVS 182 (295)
T ss_pred c-cccccchhh-HHHHHHHHHHHHhhCCChH
Confidence 3 577777764 4566667777766665543
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.42 E-value=5.7e-12 Score=90.84 Aligned_cols=143 Identities=19% Similarity=0.157 Sum_probs=83.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.....|+++|.+|+|||||++.+....-........+. + .+ .......+.++||||.. ... ...++.+|.+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 34577999999999999999988864221111111111 1 11 11234567799999863 111 123577999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHH-HhCCCceEEecc
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRK-LIGAPAYIECSS 160 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sa 160 (197)
++|.+.+..... ..++..+... +.|. ++|+||.|+.+... .......+.+. +.. .....+++.+||
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 999986654433 2445555444 5675 45999999864321 00011122222 221 233448999999
Q ss_pred CCCC
Q 036449 161 KTQQ 164 (197)
Q Consensus 161 ~~~~ 164 (197)
++..
T Consensus 179 ~~~~ 182 (225)
T cd01882 179 IVHG 182 (225)
T ss_pred ccCC
Confidence 9873
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.40 E-value=1.7e-12 Score=98.48 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=81.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCce--eeeeeEEEEECCeEEEEEEEeCCCccc--cc---cccccCcC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTV--FDNFSANVVVNGSTVNLGLWDTAGQED--YN---RLRPLSYR 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~---~~~~~~~~ 76 (197)
..++|+|+|.+|+|||||||++.+-.-.+.. .++. ..+...........-.+.+||.||.-. |. .+...-+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 4689999999999999999999864332221 1111 112222222212222477999999432 21 12223355
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc--CCcccccCCCCCCcccH----HHHHHHHH--
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPIST----AQGEELRK-- 148 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~----~~~~~~~~-- 148 (197)
.-|.+|++.+- .|....-.+...++.. +.|+++|-+|+|.. .++. ..+...+. ++.++.+.
T Consensus 114 ~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 114 RYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp G-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHHH
T ss_pred ccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHHH
Confidence 67888887763 2333323556777777 78999999999962 1110 00111121 22222222
Q ss_pred --HhC--CCceEEeccCCC--CCHHHHHHHHHHHHcCC
Q 036449 149 --LIG--APAYIECSSKTQ--QNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 149 --~~~--~~~~~~~sa~~~--~~i~~l~~~i~~~~~~~ 180 (197)
+.+ .+++|-+|+.+- .++..|.+.+.+.+..+
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 223 336888998874 45777888887766554
No 294
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.38 E-value=3.8e-11 Score=91.51 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=99.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN----TFP-------------TDYVP----TVFDNF----SANVV-VNGSTVNLGL 58 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~----~~~-------------~~~~~----~~~~~~----~~~~~-~~~~~~~~~i 58 (197)
..+.|.|+|+.++|||||+++|... ... ..... |+...+ ...+. .++-...+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3488999999999999999999977 222 22222 222222 11222 2344567889
Q ss_pred EeCCCcccc--------cc-----------c----------cccCcC-CCcEEEEEE-eCC----CchhHHHHHHHHHHH
Q 036449 59 WDTAGQEDY--------NR-----------L----------RPLSYR-GADVFILAF-SLI----SKASYENVSKKWIPE 103 (197)
Q Consensus 59 ~D~~G~~~~--------~~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~ 103 (197)
+||+|-..- .. - ....+. .+++.|+|. |.+ .++.+..+...++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999992211 01 0 112233 688888887 654 224455666788888
Q ss_pred HhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 104 LKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 104 i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++.. +.|++++.|+.|.... ...+.+..+..+++. +++.+|+.+- .-+++...+.+.|++.
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l-~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESM-RESDILSVLEEVLYEF 236 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHc-CHHHHHHHHHHHHhcC
Confidence 8888 8999999999994321 123445567788886 8888887742 3444555555555554
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.38 E-value=9e-12 Score=93.88 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 132 (197)
.+.+.|+||+|...-. ......+|.++++.+...+..++... ..+. ...-++|+||.|+.....
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~----E~aDIiVVNKaDl~~~~~----- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK----KGIM----ELADLIVINKADGDNKTA----- 211 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH----hhhh----hhhheEEeehhcccchhH-----
Confidence 3567899999964221 11466799999997644444443331 1111 123389999999865321
Q ss_pred CCCCcccHHHHHHHHHHh------CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 133 PGAVPISTAQGEELRKLI------GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
. .....+........ ...+++.+||+++.|++++++.|.+.+...
T Consensus 212 --a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 212 --A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred --H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 0 00111112111111 114799999999999999999999875543
No 296
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=1.6e-12 Score=109.45 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=79.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEE--------------CCe
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVV--------------NGS 52 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~--------------~~~ 52 (197)
.+.-+|+++|+.++|||||+.+++...- ........ +... ...+.+ .+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4567899999999999999999985432 11000000 0000 011111 123
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
.+.++++||||+.+|.......+..+|++|+|+|+..+-..... .. +..+... +.|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~-~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TV-LRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HH-HHHHHHC--CCCEEEEEECCccc
Confidence 57789999999999988777788999999999999987554443 23 3333333 68999999999997
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=3.6e-12 Score=107.28 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=78.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEEC--------CeEEEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVVN--------GSTVNLGL 58 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~~--------~~~~~~~i 58 (197)
.+.-+|+++|+.++|||||+.+++...- ......+. +... .....+. ++...+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4556999999999999999999986321 11100000 0000 0111222 22567889
Q ss_pred EeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
+||||+.+|.......+..+|++|+|+|+.++-..+.. ..+..+... +.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 99999998887777788999999999999887544432 333444443 68999999999997
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.36 E-value=2.4e-11 Score=86.63 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=84.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-------CCCC-ce-eeee----eEEEEEC-C-----------------
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-------DYVP-TV-FDNF----SANVVVN-G----------------- 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-------~~~~-~~-~~~~----~~~~~~~-~----------------- 51 (197)
......|.++|..|+|||||++++....... .... .. .... .....+. +
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 3457889999999999999998887531100 0000 00 0000 0001110 0
Q ss_pred --eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449 52 --STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 52 --~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~ 129 (197)
....+.++++.|.-. ....+.-..+..+.|+|+.+....... .... . ..|.++++||+|+.....
T Consensus 99 ~~~~~d~IiIEt~G~l~---~~~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~---~--~~a~iiv~NK~Dl~~~~~-- 165 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLV---CPADFDLGEHMRVVLLSVTEGDDKPLK---YPGM---F--KEADLIVINKADLAEAVG-- 165 (207)
T ss_pred ccCCCCEEEEecCCCcC---CCcccccccCeEEEEEecCcccchhhh---hHhH---H--hhCCEEEEEHHHccccch--
Confidence 123455777777210 001111234566778888765432111 1111 1 457899999999965321
Q ss_pred cCCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHH
Q 036449 130 IDHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.......+..+..+ ..+++++||+++.|++++++++.+.
T Consensus 166 --------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 --------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred --------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11223333333332 2389999999999999999999875
No 299
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.33 E-value=3.5e-11 Score=90.34 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=82.7
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhH-------HHH---HHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY-------ENV---SKKWIPELKHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~---~~~~~~~i~~~~-~~~~~ivv~nK~D~ 122 (197)
..+.++|.+||...+.-|.+.+.+++++|||++++..... ..+ ..-+-..+.... .+.++|++.||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 6788999999999999999999999999999999864331 111 112222222233 58999999999999
Q ss_pred cCCcccc-------cCCCCCCcccHHHHHH-----HHHHhCCC----ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 123 RDDKQFF-------IDHPGAVPISTAQGEE-----LRKLIGAP----AYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 123 ~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
-++.-.. .+..+. ...+++.. |.+.+... -...+.|.+-.+|+.+|..+...+.....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 7653211 111212 22333332 22222221 23457888889999999999888776543
No 300
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.32 E-value=1e-10 Score=86.66 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEeCCCccc--------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDY----------VPTV-FDNFSANVVVNGSTVNLGLWDTAGQED-------- 66 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 66 (197)
.++|+|+|.+|+|||||++.|++....... ..+. .........-++..+.+.++||||--.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999986553321 0111 112223344467788999999999110
Q ss_pred ----------cc--------ccc-ccCcCCCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 67 ----------YN--------RLR-PLSYRGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 67 ----------~~--------~~~-~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|. ..+ ...=...|+++|.++.+. +-+-.++ ..++.+... +++|=|..|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~~---vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSKR---VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTTT---SEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhccc---ccEEeEEecccccCH
Confidence 00 011 111124789999999864 3333343 455555555 789999999998653
No 301
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.32 E-value=4.5e-12 Score=98.51 Aligned_cols=161 Identities=25% Similarity=0.385 Sum_probs=125.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+|+.++|..++|||+|+.+++.+.+... ..+.+..+..++.+++....+.+.|-+|... ..|..++|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 458999999999999999999999988765 4555678888888888888888999888433 3456779999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+.+.+..+++.+ ..+...+.... ..+|+++++++.-..... .+.+....+++++.++....+|++++.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999988 55555555433 478888888765443322 2335566667776666666899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
|.++...|+.+..++...
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999877655
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=99.31 E-value=4.1e-11 Score=92.01 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=55.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 68 (197)
..++|.++|.|++|||||++++.+... ..+++.++.......+.+.+. ..++.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 458999999999999999999987554 345555553333333333321 2358899999953211
Q ss_pred -------cccccCcCCCcEEEEEEeCC
Q 036449 69 -------RLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 69 -------~~~~~~~~~~~~~i~v~d~~ 88 (197)
......++.+|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11122356799999999973
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.1e-10 Score=91.59 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=96.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------------------------CCCCce---eeee-eEEEEECCeE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVNGST 53 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------------------------~~~~~~---~~~~-~~~~~~~~~~ 53 (197)
...++.+++|+..+|||||+.+++.. .... ...... +... .....++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35689999999999999999776631 1100 000000 1111 1222344556
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH--HHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--SKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
..+++.|.||+..|-.........+|++++|+|.+..+ .|+.. .++....++.. .-..++|++||+|+..+.+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq- 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ- 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH-
Confidence 77899999999999988888889999999999997531 11100 01112222222 1356889999999988754
Q ss_pred ccCCCCCCcccHHHHHHHH-HHhCC----CceEEeccCCCCCHHHH
Q 036449 129 FIDHPGAVPISTAQGEELR-KLIGA----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~i~~l 169 (197)
.+..........|. +..|+ ..|+++|+.+|+|+...
T Consensus 333 -----~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 -----DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -----HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 01111112223333 33332 26999999999987654
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=5.3e-11 Score=82.08 Aligned_cols=62 Identities=21% Similarity=0.138 Sum_probs=44.9
Q ss_pred EEEEeCCCccc----cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449 56 LGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120 (197)
Q Consensus 56 ~~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~ 120 (197)
+.|+|+||... ....+..++..+|++|+|.+.+...+-.+. ..+....... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 77999999643 234566678999999999999987666655 5666666555 44588998984
No 305
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.3e-12 Score=87.76 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcccc-cc--ccccCcCCCcEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDY-NR--LRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~-~~--~~~~~~~~~~~~i 82 (197)
.+|+++|...+||||+.+..+.+..+.+... ...+... .-.+.+.-+.+++||.|||-.+ .. -....++.+.+.|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 6799999999999999977776543322110 0101000 0112334578999999998644 22 2244688899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhh---hCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCceE
Q 036449 83 LAFSLISKASYENVSKKWIPELKH---YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APAYI 156 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 156 (197)
+|+|+.+. +.++...+...+.. -.|++.+=++..|.|...+........+......+ +++ ..| ..--+
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d---~l~-d~gle~v~vsf 180 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTND---ELA-DAGLEKVQVSF 180 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhH---HHH-hhhhccceEEE
Confidence 99998754 22221333333332 23899999999999987654321111111111111 121 122 11123
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
...+.-.+++.|.|..+++.+..+-.
T Consensus 181 ~LTSIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 181 YLTSIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred EEeeecchHHHHHHHHHHHHHhhhch
Confidence 44455578899999999998876543
No 306
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.27 E-value=1.8e-10 Score=88.36 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCce------------eee-eeEEEEECCeEEEEEEEeCCCcccccccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTV------------FDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLR 71 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 71 (197)
=+|+++-+...|||||+..++... |.....-.. +.+ ..+...+....+.++++|||||-+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999998643 322111110 111 11122233344788999999999999999
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+..+.-+|++++++|+..+.-.+.- --+.+.+. .+.+-|+|.||+|....+. ..-.++...+...++
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 9999999999999999886433221 11122222 2577889999999976542 112234444444443
Q ss_pred C------CceEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 036449 152 A------PAYIECSSKTQQ----------NVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 152 ~------~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~~ 181 (197)
+ .|++..|+..|. ++.-||+.|++.+..+.
T Consensus 153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 2 177888887664 68899999999887664
No 307
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.26 E-value=2.8e-11 Score=100.92 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=76.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCC--cee----------eee---eEEE--EECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP--TVF----------DNF---SANV--VVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~--~~~----------~~~---~~~~--~~~~~~~~~~i~D~~G~ 64 (197)
++.-+|+++|+.++|||||+.+++...- ...... +.. ... ...+ ..++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3455799999999999999999875321 110000 000 000 0011 12444678899999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
.+|.......+..+|++|+|+|...+...+.. ..|. ..... +.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence 99887777788899999999999876443332 2332 22222 568899999999863
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.5e-10 Score=84.88 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=103.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC---CC----------CCCCce-e---e-----eeeE--EEEE----CCeEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF---PT----------DYVPTV-F---D-----NFSA--NVVV----NGSTVNL 56 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~----------~~~~~~-~---~-----~~~~--~~~~----~~~~~~~ 56 (197)
..++|-++|+..-|||||..++.+--- ++ .|..+. . + .+.. .+.. ..-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 479999999999999999988875211 11 011111 0 0 0000 0000 0123457
Q ss_pred EEEeCCCccccccccccCcCCCcEEEEEEeCCCc----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449 57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 132 (197)
.|.|.|||+-.-+.......-.|++++|+.++.+ ++-+.+ .-++.+. -..++++=||.|+.....
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIig----ik~iiIvQNKIDlV~~E~----- 157 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEIIG----IKNIIIVQNKIDLVSRER----- 157 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhhc----cceEEEEecccceecHHH-----
Confidence 7999999987766555555567999999999864 333332 1123332 246888999999965432
Q ss_pred CCCCcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 133 PGAVPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
....+++.++|.+.- +. |++++||..+.|++-+++.|.+.+..+.
T Consensus 158 ---AlE~y~qIk~FvkGt~Ae~a-PIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 158 ---ALENYEQIKEFVKGTVAENA-PIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred ---HHHHHHHHHHHhcccccCCC-ceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 113445555665532 33 8999999999999999999999887654
No 309
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.3e-10 Score=88.69 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCC----CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTD----YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.|+..|+-..|||||+..+.+.....- -..++.+. .....+..+..+.|+|.||++++-+.....+...|.++
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl--g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL--GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee--eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 3578899999999999999987543211 11111111 11112223347889999999999887777788899999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|+|.+++-..+.. +.+..+... .....++|+||+|..++... .+...+....++ +...+++.+|+++
T Consensus 79 LvV~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r~-------e~~i~~Il~~l~--l~~~~i~~~s~~~ 146 (447)
T COG3276 79 LVVAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEARI-------EQKIKQILADLS--LANAKIFKTSAKT 146 (447)
T ss_pred EEEeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHHH-------HHHHHHHHhhcc--ccccccccccccc
Confidence 99999766554443 223333333 12345999999999764210 001111112222 3344789999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 036449 163 QQNVKAVFDAAIRVVL 178 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (197)
|.||+++.+.|.+...
T Consensus 147 g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 147 GRGIEELKNELIDLLE 162 (447)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999885
No 310
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.18 E-value=4.8e-10 Score=85.25 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEeCCCccccc--
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGST---------------VNLGLWDTAGQEDYN-- 68 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 68 (197)
++|.++|.|++|||||++++.+... ..+++.|+.+.......+.+.. ..+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999997663 2445555533333333333211 258899999953211
Q ss_pred --c---ccccCcCCCcEEEEEEeCC
Q 036449 69 --R---LRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 69 --~---~~~~~~~~~~~~i~v~d~~ 88 (197)
. .....++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1122367899999999984
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-09 Score=76.27 Aligned_cols=91 Identities=23% Similarity=0.264 Sum_probs=66.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSY 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 75 (197)
+..-||+++|-|.+|||||+..+..... ...|..|+.......+.+++ -.+++.|.||.-+= .+......
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence 4457899999999999999999986543 35566777666677777777 45679999994221 12334456
Q ss_pred CCCcEEEEEEeCCCchhHHHH
Q 036449 76 RGADVFILAFSLISKASYENV 96 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~ 96 (197)
+.+|.+++|.|++..+.-..+
T Consensus 138 rtaDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREI 158 (364)
T ss_pred ecccEEEEEecCCcchhHHHH
Confidence 789999999999987654433
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.16 E-value=7.2e-10 Score=76.12 Aligned_cols=81 Identities=14% Similarity=0.015 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEE
Q 036449 79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIE 157 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (197)
+.-|+|+|++.++... .+-.+.+. ..=++|.||.|+.+... .+.+...+-+++. +..++++
T Consensus 119 ~~~v~VidvteGe~~P---~K~gP~i~-----~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~ii~ 180 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---RKGGPGIF-----KADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPIIF 180 (202)
T ss_pred ceEEEEEECCCCCCCc---ccCCCcee-----EeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCEEE
Confidence 4889999998875332 11111111 12378999999987654 4445444444443 3348999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~ 177 (197)
+|+++|+|++++++++...+
T Consensus 181 ~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 181 TNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EeCCCCcCHHHHHHHHHhhc
Confidence 99999999999999988754
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.8e-10 Score=81.96 Aligned_cols=166 Identities=21% Similarity=0.238 Sum_probs=101.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC---CC-------CC-CCCCce---eeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN---TF-------PT-DYVPTV---FDNF-SANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~---~~-------~~-~~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
...++|..+|+.+-|||||..++... .+ .. ...|.. +... .....++-....+-..|+|||.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 46799999999999999999776531 10 00 001111 1111 1222232223445589999999998
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
........+.|+.|+|+.+++..-.+...+-++ .+.. +.| ++++.||+|+.+..+ ..++-..+.+++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl---arqv-Gvp~ivvflnK~Dmvdd~e-------llelVemEvreLL 158 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILL---ARQV-GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRELL 158 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh---hhhc-CCcEEEEEEecccccCcHH-------HHHHHHHHHHHHH
Confidence 877777788999999999998754443312111 1111 554 567789999987443 2223446678888
Q ss_pred HHhCCC----ceEEeccCCC-C-------CHHHHHHHHHHHHcCC
Q 036449 148 KLIGAP----AYIECSSKTQ-Q-------NVKAVFDAAIRVVLQP 180 (197)
Q Consensus 148 ~~~~~~----~~~~~sa~~~-~-------~i~~l~~~i~~~~~~~ 180 (197)
..|++. |++.-||..- + .|.+|++.+...+..+
T Consensus 159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 999874 4566665532 1 2456666655555443
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.16 E-value=3.5e-10 Score=85.05 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=62.5
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 132 (197)
.+.+.|+||+|.-... ......+|.++++.+.. +.+++ ..+...+. +.|.++|+||+|+......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~---- 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV---- 190 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH----
Confidence 4667899999853111 12455678888775433 33333 22223232 4678999999999653210
Q ss_pred CCCCcccHH---HHHHHHHH-hCC-CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 133 PGAVPISTA---QGEELRKL-IGA-PAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 133 ~~~~~~~~~---~~~~~~~~-~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
...... ....+... .+. .+++++||+++.|+++++++|.+...
T Consensus 191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000000 00111111 111 26899999999999999999998644
No 315
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.14 E-value=1e-09 Score=85.48 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=79.5
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh----------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS----------YENVSKKWIPELKHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~ 122 (197)
..+.++|++|+...+.-|..++.+++++|||+++++... +.+....|-..+.... .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 567899999999999999999999999999999875322 3333344444444443 68999999999998
Q ss_pred cCCccc----c----cCCCCCCcccHHHHHHHHHHh-----C-----C-CceEEeccCCCCCHHHHHHHHHHHH
Q 036449 123 RDDKQF----F----IDHPGAVPISTAQGEELRKLI-----G-----A-PAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 123 ~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~-----~-----~-~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
..+.-. . .+..+....+.+.+..+.... . . ..+..++|.+..++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 643211 0 111111112334443333221 1 1 1245688998899999999887653
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.13 E-value=8.4e-10 Score=79.75 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=45.3
Q ss_pred EEEEEEeCCCcccc-------------ccccccCcCC-CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449 54 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119 (197)
Q Consensus 54 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK 119 (197)
..+.++|+||-... ..+...++++ .+++++|+|.+..-+..+. ..+...+... +.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 45889999996421 1233446664 4589999998654433332 2444444444 7899999999
Q ss_pred CcccCC
Q 036449 120 LDLRDD 125 (197)
Q Consensus 120 ~D~~~~ 125 (197)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 999764
No 317
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1e-09 Score=83.75 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh--CCCCC--------CCCCce----------ee-eeeEEEEECCeEEEEEEEeCCCcc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS--NTFPT--------DYVPTV----------FD-NFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~--~~~~~--------~~~~~~----------~~-~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
=..++|-+|.+|||||..+++- +.... ....+. +. ..+..+.++.....+++.|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3568999999999999988762 22111 011111 10 111223345556788899999999
Q ss_pred ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
+|..-.-..+..+|.+++|+|+..+-.-+.. ++..-.+.+ ++|++-+.||.|.....
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGRD 149 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccCC
Confidence 9887666678889999999999887544443 555555544 99999999999986643
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.7e-09 Score=88.81 Aligned_cols=118 Identities=22% Similarity=0.208 Sum_probs=82.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCC--CCC--C-CCC---c--e------eeee---eEEEEECCeEEEEEEEeCCC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNT--FPT--D-YVP---T--V------FDNF---SANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~--~-~~~---~--~------~~~~---~~~~~~~~~~~~~~i~D~~G 63 (197)
..+.-+|.++|+.++|||||..+++... ... + ... + . +-+. .....+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 4567789999999999999998887422 111 0 000 0 0 0011 11233443 47888999999
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|-+|.......++-+|++++|+|+...-..+.- .-|.+... . ++|.+++.||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~-~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK-Y--GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh-c--CCCeEEEEECcccccc
Confidence 999999888889999999999999887655544 34444433 3 5999999999998654
No 319
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.10 E-value=7.3e-10 Score=89.14 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=71.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCC-CCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----------cccc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTF-PTD-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR----------LRPL 73 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~ 73 (197)
.++|+++|.+|+||||++|++++... ... ..+.+..........++ ..+.++||||...... ....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 47999999999999999999998653 222 11222222222233445 5677999999654210 0111
Q ss_pred CcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCcccCC
Q 036449 74 SYR--GADVFILAFSLISKASYENVSKKWIPELKHYA-P--GVPIILVGTKLDLRDD 125 (197)
Q Consensus 74 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~~~ivv~nK~D~~~~ 125 (197)
++. .+|++|+|..++.......- ..++..+...+ + =..+|||.|+.|..+.
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 222 47999999887643332111 24555565555 2 2467899999998764
No 320
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=6e-10 Score=78.43 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
+..++..++..+|++++|+|++++... |...+.....+.|+++|+||+|+.+.. ...+....+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 567778889999999999999876421 212222223478999999999996432 122222233
Q ss_pred H-----HHhCC--CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 147 R-----KLIGA--PAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 147 ~-----~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
. ...+. ..++.+||+++.|++++++.|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 22222 25899999999999999999998764
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4e-10 Score=89.79 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=82.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC---------CCCceeeee----eE-----EEE---ECCeEEEEEEEeCC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---------YVPTVFDNF----SA-----NVV---VNGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~~~~~~~----~~-----~~~---~~~~~~~~~i~D~~ 62 (197)
....+|.++|+-+.|||+|+.-+.....+.. |..+..... +. +.. ..++.+.+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4678899999999999999988876544322 111110000 00 111 14677889999999
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
||-.|.......+..+|++++|+|+..+-.+..- +-+...++. +.|+++|.||.|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---cCcEEEEEehhHHH
Confidence 9999888777888899999999999988777654 333333333 58999999999974
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=5.9e-10 Score=75.97 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=63.2
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
.+..+.+.++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+.+... ......+..
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~~ 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIKE 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHHH
Confidence 4455667789999999999876543321 22233322 2689999999999854211 111112333
Q ss_pred HhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
..+. +++.+||+++.|++++++.+.+.+.
T Consensus 68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 68 SEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 3444 7899999999999999999988764
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.05 E-value=1.6e-09 Score=79.84 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=39.4
Q ss_pred CCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 111 VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 111 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.+-++|+||+|+.+... .+.+...+ +.......+++++||++|.|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56799999999965321 12233333 3333334489999999999999999999774
No 324
>PRK00098 GTPase RsgA; Reviewed
Probab=99.05 E-value=1.6e-09 Score=81.36 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=65.6
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.+.++|.+++|+|++++.........|+..+... ++|+++|+||+|+.+... .........+..+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence 4689999999999998876655446777766554 799999999999953211 12233344455676
Q ss_pred ceEEeccCCCCCHHHHHHHHH
Q 036449 154 AYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~ 174 (197)
+++++||+++.|++++++.+.
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred eEEEEeCCCCccHHHHHhhcc
Confidence 899999999999999998874
No 325
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=2.8e-09 Score=79.64 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred ccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 72 PLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
...+.++|.+++|+|+.++. ++..+ ..|+..+... ++|+++|+||+|+.+... ......+....
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~~------------~~~~~~~~~~~ 137 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDEE------------EELELVEALAL 137 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChHH------------HHHHHHHHHhC
Confidence 34588999999999999987 77777 6787777655 799999999999965321 11223334445
Q ss_pred CCCceEEeccCCCCCHHHHHHHHHH
Q 036449 151 GAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
+. +++.+||+++.|+++++..|..
T Consensus 138 g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-eEEEEECCCCccHHHHHhhhcc
Confidence 66 8999999999999999988764
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.99 E-value=1.2e-08 Score=76.54 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=70.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCcee-eeeeEEEEECCeEEEEEEEeCCCcc--------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----------VPTVF-DNFSANVVVNGSTVNLGLWDTAGQE-------- 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~-------- 65 (197)
..++|+++|++|+||||+++.+++....... .++.. ......+.-++..+.++++||||--
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 3589999999999999999999987443321 12221 1222333346778899999999911
Q ss_pred -------------ccc-----cccc-cCc-CCCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 66 -------------DYN-----RLRP-LSY-RGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 66 -------------~~~-----~~~~-~~~-~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
.|. ..+. .+. ..+|+++|.+-.+. .-+..++ ..+..+... +.+|=|..|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI--e~Mk~ls~~---vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI--EAMKRLSKR---VNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH--HHHHHHhcc---cCeeeeeeccccCC
Confidence 111 1111 111 13789999888653 2333333 445555554 67777788999864
Q ss_pred C
Q 036449 125 D 125 (197)
Q Consensus 125 ~ 125 (197)
.
T Consensus 177 ~ 177 (373)
T COG5019 177 D 177 (373)
T ss_pred H
Confidence 3
No 327
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8.6e-09 Score=77.42 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCC------------------CCce-----e-eeeeEEEEE----------CC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDY------------------VPTV-----F-DNFSANVVV----------NG 51 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~------------------~~~~-----~-~~~~~~~~~----------~~ 51 (197)
.+|++++|...+|||||+-.+..+.+.... .+.+ + +.....+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 489999999999999999777655443210 0000 0 000000001 12
Q ss_pred eEEEEEEEeCCCccccccccccCcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~ 129 (197)
..-.++++|.+|+.+|.......+. ..|..++|+.+...-... .++-+..+... ++|+.++.+|+|+.......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t--TrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT--TREHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc--cHHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 2345789999999998876655544 367889999987664432 23445556666 89999999999998762211
Q ss_pred ---------cCC-----CCCCcccHHHHHHHHHH---hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 130 ---------IDH-----PGAVPISTAQGEELRKL---IGAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 130 ---------~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
... -..+.-+.+++-..+++ -+..|+|.+|+.+|+|++-+ ..+..-+
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll-~~fLn~L 386 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL-RTFLNCL 386 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH-HHHHhhc
Confidence 001 11111233444333333 24458899999999998743 3444433
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=7.4e-09 Score=79.06 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=65.1
Q ss_pred ccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 70 LRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
+....+.++|.+++|+|+.++. ....+ ..|+..... .++|+++|+||+|+..... .........
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~ 146 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ 146 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence 3344588999999999999876 33344 566665543 3899999999999954221 111222334
Q ss_pred HhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 149 LIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
..+. .++.+||+++.|++++++.+...
T Consensus 147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 QWGY-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred hcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence 5676 78999999999999999988653
No 329
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=78.03 Aligned_cols=166 Identities=17% Similarity=0.043 Sum_probs=94.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 72 (197)
.+..++++.|.+++|||+|++-++.......... ..+.+......--+ -.+.+.|.|| ..++..+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHH
Confidence 4568999999999999999998887654433222 33333333333223 3466899999 122333444
Q ss_pred cCcCCCc---EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHH
Q 036449 73 LSYRGAD---VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRK 148 (197)
Q Consensus 73 ~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (197)
.|+.+.+ -+.+.+|++-+-.-.+. ..++++.+. +.|+.+|.||+|...........+..... .....-+..-
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 4444333 44566677654322222 344556566 89999999999986532211111111000 0111111111
Q ss_pred HhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 149 LIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
... .+.+-+|+.++.|+++++-.+.+.
T Consensus 288 ~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 288 LVD-LPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ecc-CCceeeecccccCceeeeeehhhh
Confidence 111 256779999999999998887764
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.4e-08 Score=71.92 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCC---------CCCCceeeee-eEEEEECCeEEEEEEEeCCCcc----------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPT---------DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE---------- 65 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~---------- 65 (197)
.++|+|+|.+|.|||||++.++...... .++.|+.-.. +..+.-++...+++++||||--
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 4899999999999999999887543322 1122222111 2223346777889999999911
Q ss_pred ----------------ccccccccCcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 66 ----------------DYNRLRPLSYR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 66 ----------------~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
+....+...+. .+|.++|.+-.+. .++..+.-.+++.+..- ..++=|.-|.|-.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDtl 197 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence 11122222333 3678888877653 33333323455555544 4566667788864
No 331
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.7e-08 Score=74.38 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--------CCC-ce-eeeeeEEEEECCeEEEEEEEeCCCccc---------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--------YVP-TV-FDNFSANVVVNGSTVNLGLWDTAGQED--------- 66 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--------~~~-~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~--------- 66 (197)
.++++++|++|.|||||+|.|+...+..+ ..+ +. -......+.-+|..+.++++||||--+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 38999999999999999999987755433 111 11 111122233357788999999999110
Q ss_pred ------------c----ccccccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 67 ------------Y----NRLRPLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 67 ------------~----~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
| .......+. .+|+++|.+..+.. ...-++ .++..+... +.+|=|..|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~~~---vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLSKK---VNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHhcc---ccccceeeccccCCH
Confidence 1 011112222 47899999887543 333333 444545444 677777789998654
No 332
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.92 E-value=5e-09 Score=80.66 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=70.0
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
.+.|..+...+...++++++|+|+.+.. ..|.+.+.....+.|+++|+||+|+.+.. ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 4567788888888999999999997664 23444454444478999999999996532 122222
Q ss_pred H----HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHH
Q 036449 144 E----ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 144 ~----~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
. ++++..+.. .++.+||+++.|++++++.|.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2 345566652 48999999999999999999764
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.3e-08 Score=77.79 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=66.4
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
..++|.+++|++++...++..+ ..|+...... ++|.++|+||+|+.+... ...........+..+. +
T Consensus 118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence 4679999999999888888887 7787766543 799999999999965321 0011222233345666 8
Q ss_pred eEEeccCCCCCHHHHHHHHHHH
Q 036449 155 YIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
++++||+++.|++++++.|...
T Consensus 185 v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhhC
Confidence 9999999999999999998753
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=6e-09 Score=69.78 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
+++++|.+|+|||||+|++....................+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999776532111111112223344443 3679999995
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.86 E-value=4.9e-09 Score=75.47 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred EEEEEEeCCC--ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449 54 VNLGLWDTAG--QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 54 ~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~ 131 (197)
+.+.|++|.| |.+.. ...-+|.+++|.-..-.+..+.+..-+++. +=++|+||.|......
T Consensus 122 ~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~---- 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR---- 184 (266)
T ss_dssp -SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH----
T ss_pred CCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH----
Confidence 3455777776 33322 244589999999887666655542222322 3378999999754321
Q ss_pred CCCCCcccHHHHHHHHHHhC------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 132 HPGAVPISTAQGEELRKLIG------APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
...+.+....... .++++.+||.++.|++++++.|.+...
T Consensus 185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1122222111111 248999999999999999999987543
No 336
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.85 E-value=3.7e-09 Score=77.92 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=51.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc----
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN---- 68 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~---- 68 (197)
|.++|.++||||||++++.+... ..+++.++.+.......+.+. ...++++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998665 344555553333333333332 1258899999953211
Q ss_pred cc---cccCcCCCcEEEEEEeCC
Q 036449 69 RL---RPLSYRGADVFILAFSLI 88 (197)
Q Consensus 69 ~~---~~~~~~~~~~~i~v~d~~ 88 (197)
.+ ....++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 112356799999999874
No 337
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.85 E-value=2.7e-08 Score=72.77 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=62.2
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.|++|.|-=. .......-+|.++++.-..-++..+-+..-+++ +.=++|.||.|.......
T Consensus 144 ~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a----- 207 (323)
T COG1703 144 YDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKA----- 207 (323)
T ss_pred CCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHH-----
Confidence 4456778877311 112234458988888776666655555322222 234789999996543210
Q ss_pred CCCcccHHHHHHHH----HHh-CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 134 GAVPISTAQGEELR----KLI-GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 134 ~~~~~~~~~~~~~~----~~~-~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
. .....+..+. ... =.++.+.+||.+|+|++++++.|.......
T Consensus 208 -~--r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 208 -A--RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred -H--HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 0 0001111111 111 123789999999999999999999765443
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.84 E-value=4e-08 Score=74.13 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=97.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce------------e---e-ee-------eEEEEE----------
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV------------F---D-NF-------SANVVV---------- 49 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~------------~---~-~~-------~~~~~~---------- 49 (197)
.+..+.|.++|+.+.|||||+-.+..+...+..-.+- + + .+ ......
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4567899999999999999997776554433111110 0 0 00 000010
Q ss_pred ---CCeEEEEEEEeCCCccccccc--cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 50 ---NGSTVNLGLWDTAGQEDYNRL--RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 50 ---~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
+..+-.+.|.|+.||+.|.+. ...+-.+.|..++++-+++..+--. ++-+-..... +.|++++.||+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccCc
Confidence 111234779999999988753 3445667999999999988754322 2333333333 789999999999976
Q ss_pred Ccccc-----------cCCCCCCcc-cHHHH--HHHHH--HhCCCceEEeccCCCCCHHHHHHHH
Q 036449 125 DKQFF-----------IDHPGAVPI-STAQG--EELRK--LIGAPAYIECSSKTQQNVKAVFDAA 173 (197)
Q Consensus 125 ~~~~~-----------~~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~sa~~~~~i~~l~~~i 173 (197)
+.... .-..-+..+ +.... ...+- ..+..|++.+|+.+|+|++-|.+.+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 53211 000001111 11111 11112 2234588999999999998554443
No 339
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.2e-07 Score=71.70 Aligned_cols=83 Identities=20% Similarity=0.133 Sum_probs=54.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEE------------C----CeEEEEEEEeCCCcc---
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV------------N----GSTVNLGLWDTAGQE--- 65 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~G~~--- 65 (197)
.+++.++|.|+||||||.+++...... .+|+.++-+-......+ . -....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 378999999999999999999987753 56666662222111111 1 123568899999931
Q ss_pred ----ccccccccCcCCCcEEEEEEeCC
Q 036449 66 ----DYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 66 ----~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
-.......-++.+|+++-|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 11222223466799999999986
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.9e-08 Score=73.04 Aligned_cols=149 Identities=20% Similarity=0.144 Sum_probs=92.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhC----CC------CC-CCCCc---eeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSN----TF------PT-DYVPT---VFDNF-SANVVVNGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~----~~------~~-~~~~~---~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~ 67 (197)
+.+.++|--+|+..-|||||..++..- .. .+ +..|. -+... ..++.++-....+--.|||||.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 356789999999999999999776531 11 00 00010 01111 122233322234457899999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
-........+.|+.|+|+..+|..=.+.- ..++ +.+...=..++++.||.|+.++.+ ..++-+.+.+++.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElL 200 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELL 200 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHH
Confidence 88887788889999999999997544433 1111 222222245788899999985432 2334456778888
Q ss_pred HHhCCC----ceEEeccC
Q 036449 148 KLIGAP----AYIECSSK 161 (197)
Q Consensus 148 ~~~~~~----~~~~~sa~ 161 (197)
..+++. |++.-||.
T Consensus 201 se~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHcCCCCCCCCeeecchh
Confidence 888763 56765543
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=3e-08 Score=67.59 Aligned_cols=91 Identities=16% Similarity=0.040 Sum_probs=59.0
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.+..+|.+++|+|+.++....+ ..+...+....++.|+++|+||+|+.+... .......+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 3678999999999998743221 233344433334689999999999954221 11122223222222
Q ss_pred ceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
..+.+||+++.|++++.+.+.+.+.
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHHh
Confidence 2477999999999999999977643
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.4e-08 Score=67.37 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
+.++|+++|.+|+|||||+|++.+.... ...+.++.. ...+..++ .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999875432 222222211 11222222 255999999
No 343
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.75 E-value=1.6e-08 Score=74.53 Aligned_cols=151 Identities=18% Similarity=0.198 Sum_probs=93.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeeeeeEEEEE-CCeEEEEEEEeCCCc---------cccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVV-NGSTVNLGLWDTAGQ---------EDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~---------~~~~~~~~ 72 (197)
....-|.|+|-.++|||||++++..-....+ ....+.+........ +| ..+.+.||-|- ..|.+...
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 3456799999999999999999996554332 111121111111112 23 34558899882 12332222
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVP----IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR 147 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
-...+|.++-|.|+++|..-+.. ...+.-+.... |..| ++=|-||.|..+... .+
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~------ 313 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE------ 313 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------cc------
Confidence 23468999999999999776665 45555555553 3333 455668888755321 11
Q ss_pred HHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 148 KLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 148 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..+ .-+.+||++|+|++++.+.+-..+..
T Consensus 314 E~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 314 EKN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccC---CccccccccCccHHHHHHHHHHHhhh
Confidence 111 25678999999999999988776554
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.74 E-value=3.7e-08 Score=68.01 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=36.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
..++++++|.+++|||||+|++.+.... ...++++.. ...+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence 3489999999999999999999976542 222333321 12222322 467999999
No 345
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.70 E-value=2.2e-07 Score=70.14 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=89.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCC------------------CCCCceeeeeeE-------------------EEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPT------------------DYVPTVFDNFSA-------------------NVV 48 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~------------------~~~~~~~~~~~~-------------------~~~ 48 (197)
..+|+|+|...+|||||+-.+.++.+.. ...+..+..... ...
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4799999999999999995544433221 111111111100 000
Q ss_pred E-CCeEEEEEEEeCCCccccccccc--cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 49 V-NGSTVNLGLWDTAGQEDYNRLRP--LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 49 ~-~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
+ .+..-.++|+|..|++.|..... +.-+-.|..++++-.+-.-- -...+-+..--.. ..|+.+|++|+|.++.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLALaL--~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLALAL--HVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence 1 12234478999999999875443 33445788888887654311 0101111111112 6899999999999876
Q ss_pred cccc---------cCCCCCCcc-----cHH----HHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 126 KQFF---------IDHPGAVPI-----STA----QGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 126 ~~~~---------~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+-.. ...+.-+.+ +.+ .+..|..+. .+|+|.+|..+|.|+. ++..+.+.+.-
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser-~CPIFQvSNVtG~NL~-LLkmFLNlls~ 358 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSER-VCPIFQVSNVTGTNLP-LLKMFLNLLSL 358 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCcccc-ccceEEeccccCCChH-HHHHHHhhcCc
Confidence 5311 000000000 000 011222222 2378999999999987 44445554443
No 346
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.70 E-value=2.7e-07 Score=66.27 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCcCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 78 (197)
-+|-++|-|.+||||++..+.+... ...+..|+-.+......+.+ -.+++.|.||.-+= ........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999988886543 23344444333333333333 56889999994321 12334456779
Q ss_pred cEEEEEEeCCCchhHHH
Q 036449 79 DVFILAFSLISKASYEN 95 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~ 95 (197)
+.+++|.|+..+-+-..
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 99999999987655433
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=6.5e-08 Score=66.90 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=36.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
..++++++|.+|+|||||++++....+.. ....++.. ...+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 44799999999999999999999876532 11222211 2223333 24679999994
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=3.7e-08 Score=68.13 Aligned_cols=99 Identities=22% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449 61 TAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS 139 (197)
Q Consensus 61 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 139 (197)
.||+. +........+.++|.+++|+|++++....+. .+...+ .+.|+++|+||+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------ 63 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------ 63 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------
Confidence 35543 2223334567889999999999877543322 222222 3579999999999954211
Q ss_pred HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
.....++.+..+. .++.+||+++.|++++.+.+.+.+.
T Consensus 64 ~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 64 TKKWLKYFESKGE-KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHHHHHHHhcCC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 1111122223333 6899999999999999999988763
No 349
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.5e-07 Score=70.75 Aligned_cols=115 Identities=25% Similarity=0.257 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEE------ECCe-------------------------
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVV------VNGS------------------------- 52 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~------------------------- 52 (197)
.=|+++|.=..||||+|+-++.+.++.-. .||+ +.+...+. ++|.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 45999999999999999999988776422 2222 12211111 1111
Q ss_pred --------EEEEEEEeCCCcc-----------ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE
Q 036449 53 --------TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI 113 (197)
Q Consensus 53 --------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ 113 (197)
.-.+.++||||.- .|......+...+|.+|++||...-+--++. ...+..++.+ .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 1137799999932 2345556778889999999998654333333 4445555544 5677
Q ss_pred EEEeeCCcccCC
Q 036449 114 ILVGTKLDLRDD 125 (197)
Q Consensus 114 ivv~nK~D~~~~ 125 (197)
-||.||.|..+.
T Consensus 215 RVVLNKADqVdt 226 (532)
T KOG1954|consen 215 RVVLNKADQVDT 226 (532)
T ss_pred EEEeccccccCH
Confidence 888999999654
No 350
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.68 E-value=2.2e-06 Score=65.99 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCC-----------------C----CCCCCceeeee----eEEEEE-CCeEEEEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTF-----------------P----TDYVPTVFDNF----SANVVV-NGSTVNLGLW 59 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~-----------------~----~~~~~~~~~~~----~~~~~~-~~~~~~~~i~ 59 (197)
.+=|.|+|+..+|||||+++|...-. + +...-|+...| ...+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 35689999999999999999875211 1 11111222222 123333 4667889999
Q ss_pred eCCC--------c-----------ccccccc----------ccCcCC-Cc-EEEEEEeCC----CchhHHHHHHHHHHHH
Q 036449 60 DTAG--------Q-----------EDYNRLR----------PLSYRG-AD-VFILAFSLI----SKASYENVSKKWIPEL 104 (197)
Q Consensus 60 D~~G--------~-----------~~~~~~~----------~~~~~~-~~-~~i~v~d~~----~~~s~~~~~~~~~~~i 104 (197)
||.| + +.|..-. ...++. +. ++++.-|-+ .++.+..+..+.+..+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998 0 1111100 011111 11 444444433 2466777777888888
Q ss_pred hhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 105 KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 105 ~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+.. +.|+++++|-.+-... ...+.+.++..+|+. +.+++++.+ -.-+++...+.+.|++.+
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~-l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQ-LREEDITRILEEVLYEFP 237 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence 888 8999999997765432 345677889999998 899988874 345555555666666543
No 351
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=1.8e-07 Score=63.67 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=54.7
Q ss_pred cEEEEEEeCCCchhHHHHHHHHH-HHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 79 DVFILAFSLISKASYENVSKKWI-PELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~-~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
|.+++|+|+.++.+.... .+. ..+.. .+.|+++|+||+|+.+... . ......+....+ ..++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEEE
Confidence 689999999988655432 111 22222 3789999999999954211 0 111112322333 36899
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~ 177 (197)
+||+++.|++++.+.+.+..
T Consensus 65 vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EeccCCcChhhHHHHHHHHh
Confidence 99999999999999987764
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.1e-07 Score=64.74 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=36.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
...+++++|.+++|||||++++.+... ....++.+..........+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence 457899999999999999999986543 2223333333222221112 2477999999
No 353
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.64 E-value=1.3e-07 Score=63.26 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=51.1
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.+..+|++++|+|+.++.+..+. .+...+....++.|+++|+||+|+.+... ......+.+..+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~------------~~~~~~~~~~~~~- 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ------------RKAWAEYFKKEGI- 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH------------HHHHHHHHHhcCC-
Confidence 46789999999999988664421 33333333235789999999999954321 1233344445555
Q ss_pred ceEEeccCCCCC
Q 036449 154 AYIECSSKTQQN 165 (197)
Q Consensus 154 ~~~~~sa~~~~~ 165 (197)
.++.+||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 789999997753
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.3e-07 Score=70.40 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=37.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
+.++++++|.+|+|||||+|++.+.... ...+.++.. ...+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999976532 222222221 22333332 3579999997
No 355
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.61 E-value=4.1e-08 Score=66.42 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCC-C------CCceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTD-Y------VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
=.++++|++|||||||+|.+........ . ...........+..++.. .++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 3589999999999999999997632111 0 011111222233343322 389999976543
No 356
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.7e-07 Score=74.22 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=75.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.+-++|+|++|+||||||+++...-.. .|..+.......+.++..++++..+|.. ..++. ...+-+|.+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEE
Confidence 45677889999999999999887754211 1112222334446778888999999932 33322 23455899999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~ 125 (197)
.+|.+-+-..+.. .++..+... +.| ++-|+++.|+...
T Consensus 140 lIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 140 LIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred EeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccC
Confidence 9999877555444 667777776 555 5678899999654
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=2.6e-07 Score=69.19 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=37.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
..++|+++|.++||||||+|++.+.... ...+.++.. ...+.+++ .+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 4589999999999999999999986542 222222221 12233332 3669999997
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.55 E-value=1.9e-07 Score=69.49 Aligned_cols=100 Identities=21% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449 61 TAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS 139 (197)
Q Consensus 61 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 139 (197)
.|||. +........+..+|++++|+|+.++.+.... .+...+ .+.|+++|.||+|+.+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~------------ 65 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV------------ 65 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH------------
Confidence 45653 2233445567889999999999877554332 222222 2679999999999954211
Q ss_pred HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.....++.+..+. +++.+||+++.|++++.+.+.+.+..
T Consensus 66 ~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 TKQWLKYFEEKGI-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1111112223344 68999999999999999999887754
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=1.4e-07 Score=66.32 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
..+++++|.+|+|||||+|++....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999753
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=5.1e-07 Score=61.42 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=36.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
...+|+++|.+|+|||||+|.+..... ......++..... ...+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 457899999999999999999997643 1222333322221 2222 2467999999
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.50 E-value=2e-07 Score=71.34 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
++++|.+|||||||+|+|....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999754
No 362
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=6.2e-07 Score=69.28 Aligned_cols=94 Identities=18% Similarity=0.324 Sum_probs=61.8
Q ss_pred ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH---
Q 036449 66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ--- 142 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 142 (197)
.|.......-...+.+++|+|+.|.. ..|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~ 120 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKN 120 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHH
Confidence 34443333333344999999998753 33445555444578999999999996532 11222
Q ss_pred -HHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHH
Q 036449 143 -GEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 143 -~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
...+++..+.. .++.+||+++.|++++++.|.+.
T Consensus 121 ~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 121 WLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 23334555542 57899999999999999999765
No 363
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-06 Score=69.12 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=73.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeee----------------------------------------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDN---------------------------------------- 42 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~---------------------------------------- 42 (197)
....||++.|...+||||++|+++..+.-+. ..+++.-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999987654321 11111000
Q ss_pred ---eeEEEEECCe-----EEEEEEEeCCCcc---ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC
Q 036449 43 ---FSANVVVNGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV 111 (197)
Q Consensus 43 ---~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~ 111 (197)
....+.++.. .-.+.+.|.||.+ ...+-...+...+|++|+|.++.+..+..+. .++...... +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence 0000111111 0025578999954 3344445577889999999998877666554 444444444 45
Q ss_pred CEEEEeeCCcccCC
Q 036449 112 PIILVGTKLDLRDD 125 (197)
Q Consensus 112 ~~ivv~nK~D~~~~ 125 (197)
.+.|+.||.|....
T Consensus 263 niFIlnnkwDasas 276 (749)
T KOG0448|consen 263 NIFILNNKWDASAS 276 (749)
T ss_pred cEEEEechhhhhcc
Confidence 56677788898764
No 364
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.49 E-value=1e-07 Score=67.31 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=78.3
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----------SYENVSKKWIPELKHYA-PGVPIILVGTKL 120 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~ 120 (197)
..+.+.+.|.+|+...+..|.+.+.++..+++.+.++..+ ..++....+...+.-.. .+.++|++.||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3466778899998888888888888888777776665321 12222122223332222 589999999999
Q ss_pred cccCCcccc-------cCCCCCCcccHHHHHHHHHHh----CCC-----ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 121 DLRDDKQFF-------IDHPGAVPISTAQGEELRKLI----GAP-----AYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 121 D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
|+.++.-.. ++..++ ..+.+.+++|..++ +.. .-..+.|.+.+|+.-+|..+...+.+.
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP-~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGP-KQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCC-cccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 998754221 111111 13344455554433 110 124477888899999999988776654
No 365
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=6e-07 Score=68.64 Aligned_cols=82 Identities=17% Similarity=0.060 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-C-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc--
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-P-TDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDY-- 67 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~-- 67 (197)
+++.++|.+++|||||++.+..... . .+|+.++.......+.+.+. ...+.+.|.||.-.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 2 44555543333333333321 135789999995321
Q ss_pred -----ccccccCcCCCcEEEEEEeCC
Q 036449 68 -----NRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 68 -----~~~~~~~~~~~~~~i~v~d~~ 88 (197)
.......++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 112223467899999999985
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.44 E-value=6.1e-07 Score=68.12 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=36.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~ 64 (197)
+.++++++|-++||||||||++.+...... .+..+.+. ...+.++.. +.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence 458899999999999999999998765221 11112222 222333332 669999995
No 367
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=4.1e-07 Score=68.13 Aligned_cols=101 Identities=23% Similarity=0.143 Sum_probs=65.6
Q ss_pred eCCCccc-cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc
Q 036449 60 DTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI 138 (197)
Q Consensus 60 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~ 138 (197)
-.|||.. -.......+..+|++++|+|+.++.+.... .+...+ .+.|+++|.||+|+.+...
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~~----------- 68 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPEV----------- 68 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHHH-----------
Confidence 3566532 223344567889999999999877554321 222222 2689999999999953210
Q ss_pred cHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 139 STAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.....++.+..+. +++.+||+++.|++++.+.+.+.+..
T Consensus 69 -~~~~~~~~~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 69 -TKKWIEYFEEQGI-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred -HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1111222233344 68999999999999999998887644
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.42 E-value=1.8e-06 Score=62.32 Aligned_cols=88 Identities=19% Similarity=0.123 Sum_probs=53.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD--YVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRL------RP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~ 72 (197)
.+..-|.|+|++++|||+|+|.+++. .|... ..+++........... +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45678999999999999999999988 55422 2233322222222221 23467889999996543221 11
Q ss_pred cCcCC--CcEEEEEEeCCCch
Q 036449 73 LSYRG--ADVFILAFSLISKA 91 (197)
Q Consensus 73 ~~~~~--~~~~i~v~d~~~~~ 91 (197)
..+.. ++.+|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12223 67777777765443
No 369
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.41 E-value=6.6e-07 Score=78.61 Aligned_cols=112 Identities=23% Similarity=0.225 Sum_probs=62.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCC----CCC--ceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTFPTD----YVP--TVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLS 74 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 74 (197)
.+|+|++|+||||++..- +..++-. ... ..+........+.++-+ ++|++|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEE---EEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999765 2222211 011 11111111222233223 89999921 111223333
Q ss_pred c---------CCCcEEEEEEeCCCch-----hHHH---HHHHHHHHHhhhC-CCCCEEEEeeCCcccC
Q 036449 75 Y---------RGADVFILAFSLISKA-----SYEN---VSKKWIPELKHYA-PGVPIILVGTKLDLRD 124 (197)
Q Consensus 75 ~---------~~~~~~i~v~d~~~~~-----s~~~---~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~ 124 (197)
+ ...+++|+++|+.+-. .... ..+..+..+.... -..||++++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 2 2478999999996532 1111 1133344444444 5899999999999874
No 370
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.2e-06 Score=71.34 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=77.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------eeeeeEE-------EEECCeEEEEEEEeCCCccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------FDNFSAN-------VVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~D~~G~~~ 66 (197)
..+..=+|+++-+...|||||...++.... +....... .+..... +...-+.+.++++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 345667899999999999999988874322 11111111 1111111 11223567899999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~ 122 (197)
|.+.......-+|++++.+|+..+-.-+.. ..+..... .+...++|.||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhhh
Confidence 999988888899999999999876444332 11111111 25678999999993
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.36 E-value=3.1e-06 Score=65.19 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=59.7
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (197)
...++|.+++|+++..+-....+ +.++...... +++.++|+||+|+.+.. .+....+.. ..+.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g~ 172 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPGV 172 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCCC
Confidence 35789999999999754444444 6677666666 78889999999996531 111122222 2344
Q ss_pred CceEEeccCCCCCHHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~ 174 (197)
+++.+|++++.|++++..++.
T Consensus 173 -~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 -PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -cEEEEECCCCccHHHHHHHhh
Confidence 789999999999999998874
No 372
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.6e-07 Score=67.84 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred EEEEEeCCCccccccccccCcCCCcEEEEEEeCC--Cc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI--SK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~--~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~ 130 (197)
.+.|.|+||++-.-+.......-.|++++.+..+ .+ ++-+.+. -++.+ .. ..++++-||.|+..+...
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM-~L---khiiilQNKiDli~e~~A-- 197 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIM-KL---KHIIILQNKIDLIKESQA-- 197 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHh-hh---ceEEEEechhhhhhHHHH--
Confidence 4669999999866544333333356666666554 32 3333331 12222 22 468889999999876531
Q ss_pred CCCCCCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 131 DHPGAVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
....++.+.|...-.+ .|++++||.-+.|++-+.+.|++.+--+
T Consensus 198 ------~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 198 ------LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred ------HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 1234555666554322 2899999999999999999999987654
No 373
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=1.7e-06 Score=62.36 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=52.0
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC--CCCCEEEEeeCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA--PGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~ 120 (197)
.+.++.+|.+||...+.-|...+..+.++|+|..-+.. ..+++. -.+...+.... ..+.+|++.||.
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~Ea-L~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHH-HHHHHHHHhhhHHhhhheeEEecHH
Confidence 36688999999999999999999999999999876531 112222 12233333332 468899999999
Q ss_pred cccCC
Q 036449 121 DLRDD 125 (197)
Q Consensus 121 D~~~~ 125 (197)
|+..+
T Consensus 280 Dllae 284 (379)
T KOG0099|consen 280 DLLAE 284 (379)
T ss_pred HHHHH
Confidence 98643
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.33 E-value=3.2e-06 Score=57.65 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcccccccc--------ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449 54 VNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~ 122 (197)
....++|+||...-.... ....-..+.++.++|..+..........+...+... - +++.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a----d-~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA----D-RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC----C-EEEEecccC
Confidence 456689999954221111 112335789999999865544322113334444432 2 568999996
No 375
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=4.8e-06 Score=60.60 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=43.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-----EEEEECCeEEEEEEEeCCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-----ANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~D~~G 63 (197)
.++|+.+|..|.|||||+..+++.++.....+....... ....-.+..+.+++.||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 489999999999999999999999887664444422221 1122346778899999999
No 376
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=8.7e-07 Score=67.87 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
++|+|++|||||||+|++....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=1e-06 Score=64.44 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|.+|||||||+|++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 58999999999999999998653
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=7.2e-07 Score=65.93 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC------CCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF------PTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
-.+++|.+|||||||+|++....- +... ..-...+....+.+++... ++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 478999999999999999986322 1111 1111222233334432223 79999986544
No 379
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=1.1e-06 Score=65.76 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
-.++++|++|+|||||++.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.27 E-value=1.8e-06 Score=66.69 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-------PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
.+++++|.+|||||||+|++..... ....+.|+... ..+.+++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence 4799999999999999999997432 12222323221 1222322 24599999954
No 381
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.26 E-value=0.00014 Score=49.45 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=96.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---ccccccccCcCC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---DYNRLRPLSYRG 77 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~~~~~~~~~~~~ 77 (197)
|+..+.-.|+++|..+.++..|..++....- . ..+++.-...-+ +....++ .
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp~e~~~lRp----r 64 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLPSENNNLRP----R 64 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCcccccCCCc----e
Confidence 4566778999999999999999999986321 0 112222211110 1111122 3
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.|.++|++|....-+++.+ +.-+..+...+.--.+.++++-....+... +...+..+++..|+. |++.
T Consensus 65 IDlIVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~ 132 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLF 132 (176)
T ss_pred eEEEEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEE
Confidence 5999999999999999988 555555554443334555565555544332 678889999999998 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 036449 158 CSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+.-.+.++...+-+.|.+.+.
T Consensus 133 ~~le~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 133 ADLENEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred eecccchHHHHHHHHHHHHHH
Confidence 999988888888888887654
No 382
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.3e-05 Score=54.95 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCC--CHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeE----EEEEEEeCCCccccccccccCcCCC
Q 036449 6 FIKCVTVGDGAV--GKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGST----VNLGLWDTAGQEDYNRLRPLSYRGA 78 (197)
Q Consensus 6 ~~~i~v~G~~~~--GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~ 78 (197)
..-++|+|.+|+ ||.+|+.++....|.....+.....+ ..+ ++++- +.+.+. +--+++.--.....+..
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcis--hicde~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCIS--HICDEKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEee--cccchhccCCcccccce
Confidence 356899999999 99999999998877654333322121 111 22211 222221 11111111111233445
Q ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc-------------------------cC-C
Q 036449 79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF-------------------------ID-H 132 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~-------------------------~~-~ 132 (197)
.++++|||++....+..+ ..|+.-..... =-.++.++||.|..++.... +. .
T Consensus 80 ~a~vmvfdlse~s~l~al-qdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDAL-QDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHH-Hhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 799999999999988887 78866332221 02346778999976542111 00 0
Q ss_pred C--------CCCcccHHHHHHHHHHhCCCceEEeccCCC------------CCHHHHHHHHHHH
Q 036449 133 P--------GAVPISTAQGEELRKLIGAPAYIECSSKTQ------------QNVKAVFDAAIRV 176 (197)
Q Consensus 133 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~l~~~i~~~ 176 (197)
. .......-.+.+|+.+.++ .|++.++.+. .|++.+|..+-..
T Consensus 158 egssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 0 0111122345788888888 8999888543 3788888877654
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=6e-05 Score=50.64 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=41.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 62 (197)
..+||.+-|+|||||||++.++...--... -..+..+..++..+++..=|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 468999999999999999987764321111 23355667777778888888888887
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.21 E-value=5.8e-05 Score=57.30 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCcccccc--------cc----ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449 53 TVNLGLWDTAGQEDYNR--------LR----PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~--------~~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~ 120 (197)
.+.+.++||||...... .. ...-...+..++|.|++.+. +.+ .. ...+... --+.-+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECC
Confidence 35678999999543211 11 11123467889999998542 222 11 1112111 12457889999
Q ss_pred cccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 170 (197)
|....-. .+...+...+. |+..++ +|++++++-
T Consensus 270 D~t~~~G--------------~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAKGG--------------VVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCcc--------------HHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 9654322 23344566677 777777 677776653
No 385
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.20 E-value=1.8e-05 Score=62.89 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=46.0
Q ss_pred EEEEEeCCCcc-------------ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 036449 55 NLGLWDTAGQE-------------DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121 (197)
Q Consensus 55 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D 121 (197)
+..+.|.||.- ...++...+..+.+++|+|+--..-+.-......+...+... +...|+|.+|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence 46689999921 223555678889999999986433322222223333333333 788999999999
Q ss_pred ccCCcc
Q 036449 122 LRDDKQ 127 (197)
Q Consensus 122 ~~~~~~ 127 (197)
+.+.+.
T Consensus 491 lAEknl 496 (980)
T KOG0447|consen 491 LAEKNV 496 (980)
T ss_pred hhhhcc
Confidence 988754
No 386
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=3.2e-06 Score=63.68 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|++|+|||||+|.+....
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998654
No 387
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=60.38 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=54.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEE---------------CCeEEEEEEEeCCCccc-
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV---------------NGSTVNLGLWDTAGQED- 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~i~D~~G~~~- 66 (197)
+..++|.++|.++|||||+++.+...... .+++.++-+-....+.+ ......++++|++|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 35689999999999999999999987664 44444442222212211 12346789999999321
Q ss_pred ------cccccccCcCCCcEEEEEEeCC
Q 036449 67 ------YNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 67 ------~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
........++.+|+++-|++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1122223456789888888764
No 388
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.13 E-value=1.5e-05 Score=59.18 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCcccccccc------------ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449 53 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~ 120 (197)
.+.+.++||||........ ...-..+|..++|+|++-.. +.+ .. ...+.+.. -+.-+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~-~~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQ-AKVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HH-HHHHHhhC--CCCEEEEEcc
Confidence 3567899999964322111 11123488999999997542 222 11 22222221 2457889999
Q ss_pred cccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 170 (197)
|....-. .+.......+. |+..++ +|.+++++.
T Consensus 228 De~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 9865432 22344445566 776666 667776653
No 389
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.13 E-value=2.4e-06 Score=59.63 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCCEEEEeeCCcccCCcccc-----c--------CCCCC------CcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449 110 GVPIILVGTKLDLRDDKQFF-----I--------DHPGA------VPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 110 ~~~~ivv~nK~D~~~~~~~~-----~--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 170 (197)
..|-|=|.+|+|+....... . ..+.. ..........+...++.+.|++..+.+.++++.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 68899999999997652211 0 00000 11112234466678888899999999999999999
Q ss_pred HHHHHHHcCC
Q 036449 171 DAAIRVVLQP 180 (197)
Q Consensus 171 ~~i~~~~~~~ 180 (197)
..|...+.-.
T Consensus 244 ~~ID~aiQy~ 253 (273)
T KOG1534|consen 244 SYIDDAIQYG 253 (273)
T ss_pred HHHHHHHHhc
Confidence 9988766544
No 390
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=3.7e-06 Score=65.08 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-+++++|.+|||||||+|++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999864
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=98.08 E-value=1.7e-05 Score=60.43 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=52.7
Q ss_pred EEEEEEeCCCcccccc-c---cccC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcc
Q 036449 54 VNLGLWDTAGQEDYNR-L---RPLS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~ 127 (197)
+.+.++||+|...... + ...+ ..+.|.+++|.|++.+...... ...+... --+--++.||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCcc
Confidence 4577999999643211 1 0111 2257889999999765322221 1222211 123467899999965432
Q ss_pred cccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~ 170 (197)
.+...+...+. |+..++ +|.+++++.
T Consensus 297 --------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 --------------AALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred --------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 12334444566 676666 688887664
No 392
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.04 E-value=3e-05 Score=42.60 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 036449 77 GADVFILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLD 121 (197)
Q Consensus 77 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D 121 (197)
-.++++|++|.+.. -+.++- ..++..++..+++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 36799999999764 445544 577899999999999999999998
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=9.2e-05 Score=55.02 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=66.3
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
.-...+.|-.++|+.+.+|+--....++++-..... ++.-+|+.||+|+..... ....+........+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~~g 141 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYEDIG 141 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHHhCC
Confidence 334455777777788777754444447777776666 788889999999987543 11134555667778
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHH
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
. +.+.+|++++.+++++...+...
T Consensus 142 y-~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 142 Y-PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred e-eEEEecCcCcccHHHHHHHhcCC
Confidence 7 89999999999999999887653
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.96 E-value=1.9e-05 Score=54.33 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 61 (197)
||++-|++|+|||||++++...--.. .-..+..++....-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999998877532111 11223344444444555555666666
No 395
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=3.1e-05 Score=60.90 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCCceeeeeeEEEEE-----------------------CCe
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--------TDYVPTVFDNFSANVVV-----------------------NGS 52 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------~~~ 52 (197)
.+.=++-|+-+...|||||...+....-. ..+..|-.+.....+++ ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34456889999999999999888753211 11111111111111111 345
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
...++++|.|||-+|.+.....++-.|+.+.|+|--++-..+.- .-+.+.+..+ +.-+++.||.|..
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence 67899999999999999988899999999999998877655543 4455666665 3446679999963
No 396
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=3.5e-06 Score=64.60 Aligned_cols=116 Identities=17% Similarity=0.059 Sum_probs=79.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--------CCCCCCce--------e-eeeeEEEEECCeEEEEEEEeCCCcccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--------PTDYVPTV--------F-DNFSANVVVNGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--------~~~~~~~~--------~-~~~~~~~~~~~~~~~~~i~D~~G~~~~ 67 (197)
+.=+|.++.+-.+||||...+++.-.. .....-|. + ...+.-+.++=+.++++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 345789999999999999988764211 11111110 0 011222333334477889999999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
+-.....++-.|+++.|+|.+-+-..+.+ ..|.+.-.. ++|-+.+.||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhh
Confidence 98888888889999999999887655555 455543222 689999999999864
No 397
>PRK13695 putative NTPase; Provisional
Probab=97.92 E-value=0.00059 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987643
No 398
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.2e-05 Score=59.19 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=92.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCC-------------------CCCCCCC----ce------eeeeeEE-EEECCe
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNT-------------------FPTDYVP----TV------FDNFSAN-VVVNGS 52 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------------------~~~~~~~----~~------~~~~~~~-~~~~~~ 52 (197)
+...++++++|...+||||+-..+.... -..-|.+ |. +-..... -.+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3567999999999999999874333110 0000000 00 0000000 011112
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH-HHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV-SKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
.-.+++.|.||+..|......-..++|..++|+.+...+ .|+.- ...-...+.+...-...|+++||+|-...+-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW- 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW- 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc-
Confidence 346789999999988887777788899999999884331 12221 0111222333333467899999999764320
Q ss_pred ccCCCCCCcccHHHHHHHHHHhCC-----CceEEeccCCCCCHHHHHH
Q 036449 129 FIDHPGAVPISTAQGEELRKLIGA-----PAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~ 171 (197)
+ ...+....+....|.+..+. ..|+++|..+|.++++...
T Consensus 235 --s-~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 --S-NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred --c-hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 0 00111122333444443332 2589999999999887654
No 399
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.90 E-value=1.4e-05 Score=59.18 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=36.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee------EEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS------ANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~D~~G~ 64 (197)
...++++|+|-||+|||||++++........-...++..-. ..+.+..+ -.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 35689999999999999999887654332221111121111 11223222 23679999994
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.90 E-value=3.7e-05 Score=60.29 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCccccc-----ccccc-CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 53 TVNLGLWDTAGQEDYN-----RLRPL-SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
.+.+.|+||||..... .+... ...+++-+++|.|.+-++.-... ...+... -.+--+|.||.|....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCCC
Confidence 3567899999943221 11110 12357889999998766433222 2233222 2356788999997543
No 401
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.82 E-value=1.5e-05 Score=56.75 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=66.0
Q ss_pred EEEEEEeCCCccccccccc------cCcCCCcEEEEE---EeC---CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 036449 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILA---FSL---ISKASYENVSKKWIPELKHYA-PGVPIILVGTKL 120 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v---~d~---~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~ 120 (197)
-...++|+|||-++-..+. ..++..+.=+.+ +|. +++.+|-.. ++..+.... =..|-+=|..|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence 3466999999865432111 122334433333 333 456555443 222222221 257888889999
Q ss_pred cccCCcccc-------------------cCCCC---CCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 121 DLRDDKQFF-------------------IDHPG---AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 121 D~~~~~~~~-------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
|+...-... .+... ...-..+..-.+.+.++.+.|..++-.+.+++-.+...|.++
T Consensus 174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkA 251 (290)
T KOG1533|consen 174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKA 251 (290)
T ss_pred HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhc
Confidence 986543311 00111 112233455667777888778778888778888888777664
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=3e-05 Score=67.30 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=58.4
Q ss_pred EEEEcCCCCCHHHHHHHHh-hCCCCCCC--CC--ceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccC-
Q 036449 9 CVTVGDGAVGKTCLLISYT-SNTFPTDY--VP--TVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLS- 74 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~- 74 (197)
-+|||++|+||||++..-- .-.+.... .. ..+..... -.+.+. -.++||.|-. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 4899999999999993221 11111110 00 01111111 112222 2378888821 112333322
Q ss_pred --------cCCCcEEEEEEeCCCchh-----HHHHHHHH---HHHHhhhC-CCCCEEEEeeCCcccC
Q 036449 75 --------YRGADVFILAFSLISKAS-----YENVSKKW---IPELKHYA-PGVPIILVGTKLDLRD 124 (197)
Q Consensus 75 --------~~~~~~~i~v~d~~~~~s-----~~~~~~~~---~~~i~~~~-~~~~~ivv~nK~D~~~ 124 (197)
.+..+++|+.+|+.+-.+ .+.....+ +.++.... -..|+++++||.|+.+
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 345789999999964211 11111222 33333333 4799999999999976
No 403
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=5.2e-05 Score=60.83 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-----C-CCCCceee----------e---eeEEEEECCeEEEEEEEeCCCcccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-----T-DYVPTVFD----------N---FSANVVVNGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-----~-~~~~~~~~----------~---~~~~~~~~~~~~~~~i~D~~G~~~~ 67 (197)
=+|-++-+-.+||||+-.+.+....- . ....++.+ . -...+.+. .+.+.++|||||-+|
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHVDF 117 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCceeE
Confidence 45677777899999999887642210 0 00011100 0 01112223 577889999999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
.-.....++--|++++|+|...+-.-+.. .-|.+ +.++ +.|.+.+.||+|...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRMG 170 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhcC
Confidence 88888888999999999998766444433 34433 3334 799999999999753
No 404
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.70 E-value=0.00017 Score=48.05 Aligned_cols=106 Identities=17% Similarity=0.079 Sum_probs=59.1
Q ss_pred EEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449 10 VTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 10 ~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
+.-|..|+|||++...+...-.... ..+. .+... ....-.+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence 3457889999998744332110010 0000 00000 0000115677999998532 22335678899999999875
Q ss_pred CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 89 SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
..++... ...++.+.......++.+|.|+.+..
T Consensus 78 -~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 4444443 34455555444456788999999753
No 405
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.68 E-value=6e-05 Score=59.35 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
.+.|.+||-|+|||||+||+|.+.+-..- ..|.+-+ .-.++.++. .+.+.||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 58999999999999999999998875432 1222211 122233332 2458999994
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.65 E-value=0.0022 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+..-.++.|.-|+|||||+++++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3455788899999999999999854
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.65 E-value=0.005 Score=46.91 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCcEEEEEEeCCCchhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCc
Q 036449 77 GADVFILAFSLISKASYEN-VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APA 154 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (197)
..|+++-|+|..+...... .......++... =+|++||.|+..... .+..+...++.+ ..+
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~~------------l~~l~~~l~~lnp~A~ 178 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAEE------------LEALEARLRKLNPRAR 178 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHHH------------HHHHHHHHHHhCCCCe
Confidence 3578999999877654333 323444444422 378899999976431 233334444443 335
Q ss_pred eEEeccCCCCCHHHHHH
Q 036449 155 YIECSSKTQQNVKAVFD 171 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~ 171 (197)
++.++.. +....+++.
T Consensus 179 i~~~~~~-~~~~~~ll~ 194 (323)
T COG0523 179 IIETSYG-DVDLAELLD 194 (323)
T ss_pred EEEcccc-CCCHHHhhc
Confidence 6777763 444444433
No 408
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.63 E-value=7.3e-05 Score=53.36 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=25.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
|-+++..-|+++|++|+|||||++.+...
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 67788889999999999999999888753
No 409
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=5.4e-05 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-+|+|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999888754
No 410
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=5.7e-05 Score=48.95 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.|+|.|++||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=5.8e-05 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.||+++|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998876
No 412
>PRK07261 topology modulation protein; Provisional
Probab=97.58 E-value=6.6e-05 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+|+|+|++|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999887643
No 413
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.58 E-value=8.4e-05 Score=41.89 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
..++.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987753
No 414
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.57 E-value=9.3e-05 Score=50.99 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
|......-+.++|.+|||||||+.++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66667778999999999999999988864
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.56 E-value=0.0007 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHH
Q 036449 5 RFIKCVTVGDGAVGKTCLLISY 26 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~ 26 (197)
+..-|+++|++|+||||.+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567999999999999977443
No 416
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.56 E-value=0.00011 Score=51.58 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.=|+++|++|||||||++++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999999865
No 417
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.53 E-value=0.00011 Score=56.18 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=37.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 64 (197)
++.+++.|+|-+++||||+|+++.....- ....|.. ......+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheeccC---CceeccCCce
Confidence 46799999999999999999999976652 1112221 12222333332 4669999994
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.51 E-value=0.00054 Score=45.38 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTF 31 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~ 31 (197)
.-.+++.|++|+|||++++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35699999999999999988887543
No 419
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.50 E-value=0.00016 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+..-|+++|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466889999999999999998754
No 420
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00071 Score=54.44 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
-.|+++|+.|+||||++..|.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999997665
No 421
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=9.4e-05 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.48 E-value=0.00033 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~ 27 (197)
+...|+++|.+|+||||.+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999996553
No 423
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00012 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
+-.-+++.|++|+|||||++.++...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998765
No 424
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00016 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|++|||||||++-+..-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 48999999999999998887654
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.44 E-value=0.00031 Score=54.29 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
.|+++|+.||||||-+.+|-
T Consensus 205 vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999885543
No 426
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.43 E-value=0.00012 Score=52.44 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++|||||||++-+-.-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999877654
No 427
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.42 E-value=0.00018 Score=41.81 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888765
No 428
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00014 Score=52.50 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++|+|||||++.+-+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999887754
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.40 E-value=0.00021 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+...|.+.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999887753
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.40 E-value=0.0013 Score=40.35 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=41.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-cccCcCCCcEEEEEEeC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL 87 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (197)
+++.|..|+||||+...+...-....+. ...++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 6788999999999996655321111111 11112 4668999986432221 13456678888888886
Q ss_pred CCc
Q 036449 88 ISK 90 (197)
Q Consensus 88 ~~~ 90 (197)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 543
No 431
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.38 E-value=0.00011 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999988865
No 432
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.00018 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..+|++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999888754
No 433
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=5.7e-05 Score=54.56 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=88.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe--EEEEEEEeCCCcccccccccc--CcCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS--TVNLGLWDTAGQEDYNRLRPL--SYRGAD 79 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~--~~~~~~ 79 (197)
+....|.+.|+.+. |++|++.+...-.. ..|+....|+......+. .-..++|+.+|......+... ..++..
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 34567888888766 88998888654322 345554444444333332 223569999997654433222 222222
Q ss_pred --EEEEEEeCCCchhHHHHHHHHHH--------------------------HHhhhC-----------C-CCCEEEEeeC
Q 036449 80 --VFILAFSLISKASYENVSKKWIP--------------------------ELKHYA-----------P-GVPIILVGTK 119 (197)
Q Consensus 80 --~~i~v~d~~~~~s~~~~~~~~~~--------------------------~i~~~~-----------~-~~~~ivv~nK 119 (197)
.+|++.|++++..+-......++ .+..+. | -+|++||+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 67899999987553211111111 111111 1 3699999999
Q ss_pred CcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+|.-..-+ +..+...=...+.++..||. ..+..|++-..-.+.+.+.+.+...
T Consensus 200 YDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSskMe~l~K~~r~~i~HlaF 252 (363)
T KOG3929|consen 200 YDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSKMEALLKKIRGVINHLAF 252 (363)
T ss_pred hhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHHHHhhHHHhhc
Confidence 99865322 11111112334566666776 5666677643333333333333333
No 434
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.34 E-value=0.00087 Score=42.14 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=45.7
Q ss_pred EEEEc-CCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 9 CVTVG-DGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 9 i~v~G-~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
|++.| ..|+||||+...+...-.... .++. .+..+ ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56777 568999999855432211111 1111 01111 11567799999864322 22556779999999886
Q ss_pred CCchhHHHHHHHHHH
Q 036449 88 ISKASYENVSKKWIP 102 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (197)
+ ..++... ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 4 4455555 34444
No 435
>PRK06217 hypothetical protein; Validated
Probab=97.33 E-value=0.00021 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+|+|+|.+||||||+.+++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888754
No 436
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.32 E-value=0.00076 Score=46.67 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=29.1
Q ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
|++++|+|+.++.+... ..+...+.....+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 68999999988744322 133333211123689999999999964
No 437
>PRK01889 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00027 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998643
No 438
>PRK14530 adenylate kinase; Provisional
Probab=97.30 E-value=0.00028 Score=50.64 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
+|+++|++||||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988753
No 439
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.28 E-value=0.00013 Score=55.96 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
+..+.|.|.+||-+++||||+||.|...+.-.- .|-.+++....+..--+.+. ++||||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmkrIf--LIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMKRIF--LIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHhcee--EecCCC
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.27 E-value=0.00027 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 48999999999999998875
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.26 E-value=0.00027 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999887753
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.26 E-value=0.00028 Score=46.89 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998864
No 443
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.24 E-value=0.00031 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888764
No 444
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.24 E-value=0.00028 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|++.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999887764
No 445
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.23 E-value=0.00039 Score=50.31 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|.-...++|+++|++||||||+...+..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3345668999999999999999987764
No 446
>PRK14527 adenylate kinase; Provisional
Probab=97.22 E-value=0.00039 Score=48.95 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+.++...|+++|++|+||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5666777899999999999999988764
No 447
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.00033 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
+|+++|.+|+||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999877653
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.21 E-value=0.00037 Score=45.79 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPT 33 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~ 33 (197)
-.++++|++|+||||++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999888765433
No 449
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0003 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999988876
No 450
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.21 E-value=0.00035 Score=49.00 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.|+++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 451
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0011 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++|++|+|||||++.+..
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999977764
No 452
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0017 Score=54.63 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
-|+++|+.|+||||.+.++.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999996665
No 453
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.16 E-value=0.00039 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999987664
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.14 E-value=0.00045 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999888765
No 455
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.13 E-value=0.00048 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
=.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999998875
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.12 E-value=0.00045 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999998864
No 457
>PRK14532 adenylate kinase; Provisional
Probab=97.09 E-value=0.00053 Score=48.09 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
++|+++|++||||||+..++...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999888653
No 458
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.00054 Score=52.49 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=30.4
Q ss_pred eEEEEEEEeCCCcc--c---cccccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHH
Q 036449 52 STVNLGLWDTAGQE--D---YNRLRP-LSYRGADVFILAFSLISKASYENVSKKWI 101 (197)
Q Consensus 52 ~~~~~~i~D~~G~~--~---~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 101 (197)
..+.+.|.||+|-. + |..+.. .-.-+.|-+|+|.|.+-.++-+.....+-
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 35668899999921 1 111111 11335899999999998866555434443
No 459
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.08 E-value=0.0042 Score=43.14 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=57.0
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~ 131 (197)
..+.+.++|+|+.... .....+..+|.+++++..+ ..+...+ ..+.+.+... +.++.+|+|+.|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 3467889999975322 2223467899999999877 3455555 5666666654 5778999999987432
Q ss_pred CCCCCcccHHHHHHHHHHhCCCceE
Q 036449 132 HPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
...+..++.+.++. +++
T Consensus 159 -------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -------hHHHHHHHHHHcCC-CeE
Confidence 23456677777776 554
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.07 E-value=0.00057 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|++|+|||||+|-+-+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 589999999999999987765
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.07 E-value=0.00051 Score=48.01 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|+++|++||||||+++.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988874
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.06 E-value=0.0006 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.++++|++|+||||+++.+...
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999988764
No 463
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.05 E-value=0.0006 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987764
No 464
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.05 E-value=0.0028 Score=41.16 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999888754
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.05 E-value=0.00057 Score=48.41 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
|+++|++|+||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998877643
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.04 E-value=0.00058 Score=48.34 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|.+.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999888654
No 467
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.00074 Score=46.95 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+-|++.|.+|||||||.+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999888754
No 468
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.00077 Score=46.61 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+...|++.|.+||||||+.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999888754
No 469
>PRK13949 shikimate kinase; Provisional
Probab=97.04 E-value=0.00067 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
+|+++|++|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987654
No 470
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0013 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF 31 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~ 31 (197)
.+|++.|..|||||||+|.+..-..
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999987543
No 471
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.00 E-value=0.0024 Score=40.40 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=39.6
Q ss_pred EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-C-CCCEEEEeeC
Q 036449 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-P-GVPIILVGTK 119 (197)
Q Consensus 55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~~~ivv~nK 119 (197)
.+.++|+|+..... ....+..+|.++++.+.+ ..+.... ..+.+.++... + ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 46699999864322 233567889999988754 4555555 56666666554 3 4566677774
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00067 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
--|+++|++|||||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999888764
No 473
>PRK00625 shikimate kinase; Provisional
Probab=96.99 E-value=0.00074 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|+++|.+||||||+.+.+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999987754
No 474
>PLN02674 adenylate kinase
Probab=96.98 E-value=0.00085 Score=48.94 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.....+|+++|++||||+|+...+..
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999987765
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=96.97 E-value=0.00085 Score=46.90 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|+++|++|+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988764
No 476
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.96 E-value=0.0031 Score=48.50 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTF 31 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~ 31 (197)
..+|+|.|+.|||||||++++...-.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 36799999999999999999987543
No 477
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.96 E-value=0.0007 Score=47.60 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
+|+++|++||||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888754
No 478
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0007 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
++++|++|||||||++-+-+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999998887543
No 479
>PLN02200 adenylate kinase family protein
Probab=96.96 E-value=0.0011 Score=48.28 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
..+.|+++|++||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987764
No 480
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.95 E-value=0.0023 Score=42.13 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999988865
No 481
>PRK14531 adenylate kinase; Provisional
Probab=96.95 E-value=0.00086 Score=46.88 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+|+++|++||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999887543
No 482
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.95 E-value=0.00069 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=16.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
..-.++|.|++|+|||+|++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999987664
No 483
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.95 E-value=0.001 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-+|+++|++|+||||+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999887653
No 484
>PHA00729 NTP-binding motif containing protein
Probab=96.94 E-value=0.00097 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...+|++.|++|+|||+|..++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999887653
No 485
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.93 E-value=0.00077 Score=48.58 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 036449 9 CVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~ 28 (197)
|.+.|++|||||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67999999999999988765
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.0012 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999887653
No 487
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.92 E-value=0.0032 Score=44.78 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.+++++|.+|+|||+++..+...-.... . ...+.+.+.|..|. .+..+... .+... +..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~-~--------------p~~~~l~iiD~k~~-~l~~~~~~----~~~~~-~~~ 97 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTY-S--------------PDDVQLYIIDPKGS-DLAPLADL----PHVAA-VAV 97 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT-----------------TTTEEEEEE-TTSS-CCGGGTT-----TTBSS--S-
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHh-c--------------CCccEEEEEcCCcc-ccchhhhh----hhhcc-ccc
Confidence 4899999999999999987765432211 0 01256778998866 33332211 11111 334
Q ss_pred CCCchhHHHHHHHHHHHHhhh
Q 036449 87 LISKASYENVSKKWIPELKHY 107 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~ 107 (197)
.++.+....+...+...+..+
T Consensus 98 ~~~~~~~~~~l~~l~~em~~R 118 (205)
T PF01580_consen 98 ATDPEEILRLLEELVEEMERR 118 (205)
T ss_dssp B-SHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 456666555545555555544
No 488
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.0012 Score=47.94 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+..-|.+.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46688999999999999999887754
No 489
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.91 E-value=0.00089 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++||||||+...+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999887653
No 490
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.90 E-value=0.00086 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-+++.|++|+|||++++.+...
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999888764
No 491
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.90 E-value=0.00087 Score=49.08 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 036449 9 CVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~ 28 (197)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999988876
No 492
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.90 E-value=0.008 Score=45.11 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
-.|++.|.+|+||||+++.+-
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999885
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.89 E-value=0.00096 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4799999999999999998865
No 494
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00087 Score=46.86 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+|||||+|-+-+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 378999999999999987754
No 495
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.89 E-value=0.00086 Score=51.32 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
..+|+|+|++|+|||||++++...-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988643
No 496
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.89 E-value=0.00081 Score=48.08 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
||+|+|++||||||+...+..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.89 E-value=0.00098 Score=47.82 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999988875
No 498
>PRK04195 replication factor C large subunit; Provisional
Probab=96.89 E-value=0.012 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988764
No 499
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.00079 Score=44.78 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3458999999999999999988764
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.88 E-value=0.001 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988865
Done!