Query 036449
Match_columns 197
No_of_seqs 146 out of 1551
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 22:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.5E-43 2.9E-47 248.4 17.4 165 4-180 11-177 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 2.4E-39 8.1E-44 230.8 20.3 195 1-197 4-202 (212)
3 3oes_A GTPase rhebl1; small GT 100.0 1.1E-37 3.8E-42 220.4 17.6 181 1-197 19-201 (201)
4 3reg_A RHO-like small GTPase; 100.0 1.1E-36 3.9E-41 214.1 22.4 172 3-182 20-191 (194)
5 3t5g_A GTP-binding protein RHE 100.0 6.6E-37 2.3E-41 212.9 20.7 171 1-183 1-173 (181)
6 4dsu_A GTPase KRAS, isoform 2B 100.0 2.2E-37 7.7E-42 216.5 18.2 181 4-197 2-189 (189)
7 3bwd_D RAC-like GTP-binding pr 100.0 2.2E-37 7.7E-42 215.3 15.7 179 1-179 3-181 (182)
8 2atx_A Small GTP binding prote 100.0 3.7E-36 1.3E-40 211.4 21.4 177 3-179 15-193 (194)
9 2bov_A RAla, RAS-related prote 100.0 1E-36 3.5E-41 216.0 18.0 165 4-180 12-178 (206)
10 3q3j_B RHO-related GTP-binding 100.0 2.5E-36 8.7E-41 215.4 19.9 180 4-183 25-207 (214)
11 1mh1_A RAC1; GTP-binding, GTPa 100.0 7.5E-36 2.6E-40 208.2 21.7 180 4-183 3-184 (186)
12 2q3h_A RAS homolog gene family 100.0 4.9E-36 1.7E-40 211.9 19.4 178 3-180 17-196 (201)
13 1m7b_A RND3/RHOE small GTP-bin 100.0 6.8E-36 2.3E-40 208.4 19.7 177 3-179 4-183 (184)
14 2gf0_A GTP-binding protein DI- 100.0 1.8E-36 6.1E-41 213.6 16.5 184 1-197 2-199 (199)
15 3c5c_A RAS-like protein 12; GD 100.0 7E-36 2.4E-40 209.0 19.2 165 2-179 17-186 (187)
16 3tw8_B RAS-related protein RAB 100.0 2.4E-35 8.4E-40 204.7 19.9 168 4-183 7-175 (181)
17 3kkq_A RAS-related protein M-R 100.0 1.9E-35 6.4E-40 205.9 19.1 164 4-179 16-182 (183)
18 2j1l_A RHO-related GTP-binding 100.0 1.9E-35 6.4E-40 211.0 19.3 178 4-181 32-211 (214)
19 3ihw_A Centg3; RAS, centaurin, 100.0 2.6E-35 8.8E-40 205.6 18.7 165 2-181 16-182 (184)
20 1z08_A RAS-related protein RAB 100.0 5.7E-35 1.9E-39 200.9 20.1 165 3-179 3-169 (170)
21 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-34 4E-39 204.9 21.9 176 4-179 23-200 (201)
22 2fu5_C RAS-related protein RAB 100.0 8.2E-36 2.8E-40 207.7 15.7 167 4-182 6-174 (183)
23 2fv8_A H6, RHO-related GTP-bin 100.0 9.9E-35 3.4E-39 206.2 21.4 178 4-181 23-202 (207)
24 1gwn_A RHO-related GTP-binding 100.0 3.4E-35 1.2E-39 208.2 18.8 176 4-179 26-204 (205)
25 2iwr_A Centaurin gamma 1; ANK 100.0 1.9E-35 6.6E-40 204.9 17.1 165 1-180 2-170 (178)
26 2fn4_A P23, RAS-related protei 100.0 4.2E-35 1.4E-39 203.5 18.5 167 3-181 6-174 (181)
27 2bcg_Y Protein YP2, GTP-bindin 100.0 1.5E-34 5.1E-39 205.0 21.5 168 1-180 1-172 (206)
28 4gzl_A RAS-related C3 botulinu 100.0 4E-35 1.4E-39 207.8 18.3 174 4-177 28-203 (204)
29 2ew1_A RAS-related protein RAB 100.0 5.9E-35 2E-39 206.4 18.9 165 4-180 24-190 (201)
30 3cpj_B GTP-binding protein YPT 100.0 1.4E-34 4.8E-39 207.7 20.8 169 3-183 10-180 (223)
31 1c1y_A RAS-related protein RAP 100.0 7.2E-35 2.4E-39 199.8 18.4 163 5-178 2-166 (167)
32 1u8z_A RAS-related protein RAL 100.0 6E-35 2E-39 200.2 18.0 163 5-179 3-167 (168)
33 1r2q_A RAS-related protein RAB 100.0 1.1E-34 3.9E-39 199.3 19.3 165 3-179 3-169 (170)
34 2bme_A RAB4A, RAS-related prot 100.0 6.6E-35 2.3E-39 203.5 18.4 166 4-181 8-175 (186)
35 2hup_A RAS-related protein RAB 100.0 3E-35 1E-39 208.0 16.8 166 4-180 27-194 (201)
36 2efe_B Small GTP-binding prote 100.0 1.7E-34 5.7E-39 200.6 20.2 166 4-181 10-177 (181)
37 1z2a_A RAS-related protein RAB 100.0 1.4E-34 4.7E-39 198.6 19.2 165 3-179 2-167 (168)
38 2a5j_A RAS-related protein RAB 100.0 8.2E-35 2.8E-39 204.1 18.3 164 4-179 19-184 (191)
39 1z0f_A RAB14, member RAS oncog 100.0 1.5E-34 5.1E-39 200.4 19.2 165 3-179 12-178 (179)
40 2gf9_A RAS-related protein RAB 100.0 2.7E-34 9.3E-39 201.1 20.6 164 4-179 20-185 (189)
41 3tkl_A RAS-related protein RAB 100.0 1.9E-34 6.6E-39 202.8 19.7 168 4-183 14-183 (196)
42 2g6b_A RAS-related protein RAB 100.0 5.6E-34 1.9E-38 197.8 21.7 167 3-181 7-176 (180)
43 3q72_A GTP-binding protein RAD 100.0 1.2E-34 4E-39 198.7 18.0 162 5-179 1-164 (166)
44 2nzj_A GTP-binding protein REM 100.0 1.2E-34 4E-39 200.3 18.0 164 4-179 2-169 (175)
45 2atv_A RERG, RAS-like estrogen 100.0 9.8E-35 3.3E-39 204.5 17.7 166 1-179 23-191 (196)
46 1ek0_A Protein (GTP-binding pr 100.0 2.8E-34 9.6E-39 197.3 19.3 166 5-179 2-169 (170)
47 1z0j_A RAB-22, RAS-related pro 100.0 5.5E-34 1.9E-38 195.9 20.5 165 3-179 3-169 (170)
48 2o52_A RAS-related protein RAB 100.0 8.5E-35 2.9E-39 205.5 16.6 166 3-180 22-189 (200)
49 1kao_A RAP2A; GTP-binding prot 100.0 1.6E-34 5.4E-39 197.9 17.4 162 5-178 2-165 (167)
50 2hxs_A RAB-26, RAS-related pro 100.0 8.3E-35 2.9E-39 201.6 15.8 167 3-181 3-175 (178)
51 2g3y_A GTP-binding protein GEM 100.0 2.9E-34 9.9E-39 203.9 18.4 164 4-179 35-203 (211)
52 3q85_A GTP-binding protein REM 100.0 2.6E-34 8.8E-39 197.6 17.6 163 6-180 2-168 (169)
53 2a9k_A RAS-related protein RAL 100.0 2.9E-34 1E-38 200.2 18.1 164 4-179 16-181 (187)
54 1wms_A RAB-9, RAB9, RAS-relate 100.0 9.6E-34 3.3E-38 196.1 20.4 165 4-180 5-175 (177)
55 2fg5_A RAB-22B, RAS-related pr 100.0 4E-34 1.4E-38 200.8 18.7 165 4-180 21-187 (192)
56 2oil_A CATX-8, RAS-related pro 100.0 3.7E-34 1.3E-38 201.0 18.5 165 3-179 22-188 (193)
57 1g16_A RAS-related protein SEC 100.0 4.3E-34 1.5E-38 196.5 18.2 163 5-180 2-166 (170)
58 2p5s_A RAS and EF-hand domain 100.0 2.6E-34 9E-39 202.8 17.3 172 2-179 24-197 (199)
59 2erx_A GTP-binding protein DI- 100.0 2.4E-34 8.3E-39 198.0 16.6 164 5-180 2-168 (172)
60 2y8e_A RAB-protein 6, GH09086P 100.0 4.5E-34 1.5E-38 197.9 17.9 164 4-179 12-177 (179)
61 3con_A GTPase NRAS; structural 100.0 1.3E-33 4.3E-38 197.8 20.2 164 4-180 19-184 (190)
62 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-33 4.6E-38 199.6 20.3 165 4-180 6-172 (203)
63 3bc1_A RAS-related protein RAB 100.0 5.3E-34 1.8E-38 200.0 18.1 165 4-180 9-186 (195)
64 3cbq_A GTP-binding protein REM 100.0 2.8E-34 9.6E-39 202.1 16.4 166 4-181 21-190 (195)
65 2il1_A RAB12; G-protein, GDP, 100.0 2.6E-34 8.9E-39 201.8 15.8 165 4-179 24-190 (192)
66 1vg8_A RAS-related protein RAB 100.0 9.3E-34 3.2E-38 200.9 18.7 166 4-181 6-177 (207)
67 1z06_A RAS-related protein RAB 100.0 9.4E-34 3.2E-38 198.4 18.3 164 3-178 17-187 (189)
68 1ky3_A GTP-binding protein YPT 100.0 7.6E-34 2.6E-38 197.3 17.4 166 4-179 6-178 (182)
69 2yc2_C IFT27, small RAB-relate 100.0 6.7E-35 2.3E-39 206.9 12.2 169 2-182 16-195 (208)
70 3clv_A RAB5 protein, putative; 100.0 2.2E-33 7.5E-38 198.5 20.0 165 1-179 2-204 (208)
71 3dz8_A RAS-related protein RAB 100.0 4.5E-35 1.5E-39 205.5 10.8 165 4-180 21-187 (191)
72 2ce2_X GTPase HRAS; signaling 100.0 2.7E-33 9.3E-38 191.5 18.9 162 5-179 2-165 (166)
73 1x3s_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 195.9 19.9 165 5-182 14-181 (195)
74 2f7s_A C25KG, RAS-related prot 100.0 3.2E-34 1.1E-38 204.9 12.8 167 3-181 22-201 (217)
75 2cjw_A GTP-binding protein GEM 100.0 3.2E-33 1.1E-37 196.2 16.9 165 4-180 4-173 (192)
76 3cph_A RAS-related protein SEC 100.0 1.6E-32 5.5E-37 195.4 19.9 164 4-180 18-183 (213)
77 2wkq_A NPH1-1, RAS-related C3 100.0 4.2E-32 1.4E-36 205.3 21.1 177 4-180 153-331 (332)
78 3t1o_A Gliding protein MGLA; G 100.0 1.4E-33 4.8E-38 198.4 11.2 165 3-181 11-194 (198)
79 4djt_A GTP-binding nuclear pro 100.0 4E-33 1.4E-37 199.3 13.1 168 4-183 9-179 (218)
80 3l0i_B RAS-related protein RAB 100.0 1.6E-34 5.4E-39 203.9 5.7 165 4-180 31-197 (199)
81 4bas_A ADP-ribosylation factor 100.0 8.2E-33 2.8E-37 194.9 14.1 167 3-181 14-191 (199)
82 3gj0_A GTP-binding nuclear pro 100.0 3.8E-33 1.3E-37 199.9 12.0 165 4-182 13-178 (221)
83 3th5_A RAS-related C3 botulinu 100.0 2.3E-35 7.9E-40 209.0 0.0 174 4-177 28-203 (204)
84 1upt_A ARL1, ADP-ribosylation 100.0 2.9E-31 9.8E-36 182.6 16.9 164 4-180 5-170 (171)
85 1m2o_B GTP-binding protein SAR 100.0 5.3E-31 1.8E-35 184.6 17.7 156 4-176 21-189 (190)
86 1zd9_A ADP-ribosylation factor 100.0 1.7E-32 5.7E-37 191.9 10.0 160 4-180 20-186 (188)
87 1f6b_A SAR1; gtpases, N-termin 100.0 2.4E-31 8.1E-36 187.5 15.8 157 4-177 23-197 (198)
88 1r8s_A ADP-ribosylation factor 100.0 4.6E-32 1.6E-36 185.4 11.8 160 7-179 1-162 (164)
89 1ksh_A ARF-like protein 2; sma 100.0 9E-31 3.1E-35 182.6 18.3 159 4-180 16-181 (186)
90 2h57_A ADP-ribosylation factor 100.0 4.1E-31 1.4E-35 185.0 16.5 159 4-179 19-187 (190)
91 1zj6_A ADP-ribosylation factor 100.0 5.2E-31 1.8E-35 184.1 16.8 164 3-184 13-183 (187)
92 2b6h_A ADP-ribosylation factor 100.0 5.1E-32 1.7E-36 190.1 11.0 164 3-179 26-191 (192)
93 3llu_A RAS-related GTP-binding 100.0 1.4E-31 4.7E-36 188.5 12.6 166 3-177 17-195 (196)
94 2x77_A ADP-ribosylation factor 100.0 2.6E-31 9.1E-36 185.8 12.9 164 4-180 20-185 (189)
95 1fzq_A ADP-ribosylation factor 100.0 7.7E-32 2.6E-36 187.5 9.3 158 4-179 14-178 (181)
96 2h17_A ADP-ribosylation factor 100.0 6.3E-31 2.2E-35 182.8 13.9 155 4-176 19-180 (181)
97 2zej_A Dardarin, leucine-rich 100.0 1.2E-31 4.1E-36 187.0 9.5 165 6-181 2-180 (184)
98 2f9l_A RAB11B, member RAS onco 100.0 2.2E-29 7.7E-34 177.5 20.3 164 4-179 3-168 (199)
99 1moz_A ARL1, ADP-ribosylation 100.0 3.9E-30 1.3E-34 178.9 14.8 157 4-178 16-179 (183)
100 1oix_A RAS-related protein RAB 100.0 1E-28 3.5E-33 173.1 20.5 161 5-177 28-190 (191)
101 2fh5_B SR-beta, signal recogni 100.0 4.1E-30 1.4E-34 183.2 13.1 173 3-177 4-214 (214)
102 2lkc_A Translation initiation 100.0 7.9E-29 2.7E-33 171.4 17.4 158 4-180 6-172 (178)
103 3c5h_A Glucocorticoid receptor 100.0 1.4E-29 4.6E-34 185.0 12.2 162 3-178 16-254 (255)
104 2qu8_A Putative nucleolar GTP- 100.0 5.6E-29 1.9E-33 179.0 14.4 167 4-184 27-210 (228)
105 3r7w_B Gtpase2, GTP-binding pr 100.0 2.9E-30 1E-34 191.9 7.7 164 8-181 1-176 (331)
106 3o47_A ADP-ribosylation factor 100.0 4E-29 1.4E-33 188.6 14.0 160 4-180 163-328 (329)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 5.8E-29 2E-33 186.1 13.9 169 5-181 2-183 (307)
108 2wji_A Ferrous iron transport 100.0 1.4E-28 4.9E-33 168.5 14.7 154 5-178 2-164 (165)
109 1svi_A GTP-binding protein YSX 100.0 3.2E-28 1.1E-32 170.9 12.0 159 2-178 19-194 (195)
110 2dyk_A GTP-binding protein; GT 100.0 8.2E-28 2.8E-32 163.7 13.7 150 7-177 2-160 (161)
111 3lvq_E ARF-GAP with SH3 domain 100.0 3.2E-27 1.1E-31 187.5 18.2 160 4-183 320-488 (497)
112 3dpu_A RAB family protein; roc 100.0 2.6E-28 8.8E-33 195.2 11.1 166 2-182 37-211 (535)
113 2gj8_A MNME, tRNA modification 100.0 3.3E-28 1.1E-32 167.8 9.4 154 5-180 3-167 (172)
114 3pqc_A Probable GTP-binding pr 99.9 2.6E-27 8.8E-32 166.0 13.1 163 2-179 19-194 (195)
115 3iev_A GTP-binding protein ERA 99.9 8.3E-27 2.8E-31 174.5 16.4 165 2-180 6-183 (308)
116 2wjg_A FEOB, ferrous iron tran 99.9 1.8E-27 6.2E-32 166.1 12.0 160 2-181 3-171 (188)
117 2cxx_A Probable GTP-binding pr 99.9 3.9E-28 1.3E-32 169.6 8.3 158 7-182 2-187 (190)
118 3a1s_A Iron(II) transport prot 99.9 8.1E-27 2.8E-31 170.4 15.0 155 4-178 3-166 (258)
119 1wf3_A GTP-binding protein; GT 99.9 9.2E-26 3.2E-30 168.1 15.2 161 1-179 1-173 (301)
120 3b1v_A Ferrous iron uptake tra 99.9 1.1E-26 3.7E-31 170.7 9.1 154 5-179 2-164 (272)
121 4dhe_A Probable GTP-binding pr 99.9 4.7E-26 1.6E-30 163.1 10.4 166 3-182 26-214 (223)
122 3iby_A Ferrous iron transport 99.9 1E-25 3.6E-30 164.3 11.2 150 7-176 2-164 (256)
123 3gee_A MNME, tRNA modification 99.9 6.6E-25 2.2E-29 172.2 16.2 156 5-178 232-397 (476)
124 3i8s_A Ferrous iron transport 99.9 9E-26 3.1E-30 166.3 9.1 156 5-180 2-170 (274)
125 3k53_A Ferrous iron transport 99.9 4.4E-25 1.5E-29 162.5 12.6 158 5-181 2-168 (271)
126 2hjg_A GTP-binding protein ENG 99.9 2.1E-25 7E-30 174.3 10.9 160 4-179 173-349 (436)
127 1nrj_B SR-beta, signal recogni 99.9 4.6E-26 1.6E-30 162.6 5.8 148 4-165 10-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 5.9E-25 2E-29 172.7 11.8 160 4-179 193-369 (456)
129 1mky_A Probable GTP-binding pr 99.9 4.8E-24 1.6E-28 166.8 14.7 153 7-179 2-166 (439)
130 2e87_A Hypothetical protein PH 99.9 2.9E-23 9.8E-28 158.4 17.9 161 4-180 165-337 (357)
131 3qq5_A Small GTP-binding prote 99.9 3E-25 1E-29 171.6 6.6 157 4-180 32-197 (423)
132 3sjy_A Translation initiation 99.9 4E-23 1.4E-27 159.9 17.5 168 2-180 4-193 (403)
133 1xzp_A Probable tRNA modificat 99.9 4.7E-24 1.6E-28 167.5 11.9 151 6-178 243-404 (482)
134 1cip_A Protein (guanine nucleo 99.9 1.7E-23 5.9E-28 158.5 13.7 125 53-179 192-344 (353)
135 1ega_A Protein (GTP-binding pr 99.9 5.6E-23 1.9E-27 153.2 15.6 159 4-179 6-175 (301)
136 3izy_P Translation initiation 99.9 3.6E-25 1.2E-29 175.2 2.1 163 4-180 2-169 (537)
137 1s0u_A EIF-2-gamma, translatio 99.9 1.9E-22 6.6E-27 156.3 17.3 166 1-180 3-199 (408)
138 2xtp_A GTPase IMAP family memb 99.9 7E-23 2.4E-27 150.0 14.0 163 4-179 20-208 (260)
139 2ywe_A GTP-binding protein LEP 99.9 1.5E-22 5.1E-27 162.2 16.5 165 1-181 1-186 (600)
140 2xtz_A Guanine nucleotide-bind 99.9 2.2E-23 7.7E-28 157.8 10.5 127 52-179 181-345 (354)
141 3geh_A MNME, tRNA modification 99.9 3.8E-23 1.3E-27 161.7 12.1 154 5-181 223-386 (462)
142 3ohm_A Guanine nucleotide-bind 99.9 1.7E-23 5.8E-28 156.4 9.4 126 53-181 166-320 (327)
143 1lnz_A SPO0B-associated GTP-bi 99.9 1.4E-23 4.8E-28 158.4 8.8 160 7-182 159-333 (342)
144 3lxx_A GTPase IMAP family memb 99.9 3.2E-22 1.1E-26 144.7 15.2 167 3-179 26-214 (239)
145 1wb1_A Translation elongation 99.9 1E-22 3.5E-27 160.5 13.2 161 4-178 17-188 (482)
146 1mky_A Probable GTP-binding pr 99.9 1.5E-22 5.1E-27 158.3 13.3 159 5-179 179-355 (439)
147 3cb4_D GTP-binding protein LEP 99.9 1.2E-22 4.3E-27 162.9 12.9 162 4-181 2-184 (599)
148 2hjg_A GTP-binding protein ENG 99.9 4.1E-24 1.4E-28 167.0 3.9 152 7-179 4-165 (436)
149 1zcb_A G alpha I/13; GTP-bindi 99.9 5.2E-22 1.8E-26 150.8 15.1 124 54-179 201-353 (362)
150 1kk1_A EIF2gamma; initiation o 99.9 8.3E-22 2.8E-26 152.9 14.2 164 3-180 7-201 (410)
151 2c78_A Elongation factor TU-A; 99.9 2.7E-22 9.3E-27 155.4 10.9 167 3-180 8-213 (405)
152 4fid_A G protein alpha subunit 99.9 2.2E-22 7.7E-27 150.9 9.9 127 53-179 160-328 (340)
153 1jny_A EF-1-alpha, elongation 99.9 2.7E-22 9.2E-27 156.6 9.7 162 1-171 1-205 (435)
154 3lxw_A GTPase IMAP family memb 99.9 1.5E-21 5E-26 141.8 13.0 167 4-180 19-209 (247)
155 3j2k_7 ERF3, eukaryotic polype 99.9 2.4E-21 8.1E-26 151.3 14.2 159 4-171 15-217 (439)
156 2qtf_A Protein HFLX, GTP-bindi 99.9 6.1E-21 2.1E-25 145.3 15.9 161 7-180 179-355 (364)
157 1d2e_A Elongation factor TU (E 99.9 1.5E-21 5.1E-26 150.8 12.5 165 5-180 2-196 (397)
158 2ged_A SR-beta, signal recogni 99.9 3E-22 1E-26 140.2 7.8 114 4-126 46-172 (193)
159 1g7s_A Translation initiation 99.9 4.1E-21 1.4E-25 154.2 15.3 168 4-178 3-217 (594)
160 1zo1_I IF2, translation initia 99.9 2.2E-23 7.7E-28 163.8 1.7 161 4-176 2-164 (501)
161 1azs_C GS-alpha; complex (lyas 99.9 8.8E-21 3E-25 145.2 15.7 126 54-180 217-386 (402)
162 3p26_A Elongation factor 1 alp 99.9 8.9E-22 3E-26 155.6 10.5 156 4-168 31-227 (483)
163 3tr5_A RF-3, peptide chain rel 99.9 3.5E-21 1.2E-25 152.9 13.8 116 4-125 11-149 (528)
164 1zun_B Sulfate adenylate trans 99.9 4E-21 1.4E-25 150.0 12.0 156 4-169 22-214 (434)
165 2qag_A Septin-2, protein NEDD5 99.9 2E-22 6.9E-27 153.6 4.3 161 5-180 36-234 (361)
166 3t5d_A Septin-7; GTP-binding p 99.9 8.7E-22 3E-26 145.1 7.5 160 4-177 6-202 (274)
167 4dcu_A GTP-binding protein ENG 99.8 3.6E-22 1.2E-26 156.9 4.9 154 5-179 22-185 (456)
168 1f60_A Elongation factor EEF1A 99.8 4.5E-21 1.5E-25 150.5 9.6 156 1-169 1-202 (458)
169 2elf_A Protein translation elo 99.8 5E-21 1.7E-25 146.2 9.4 149 8-179 23-180 (370)
170 1r5b_A Eukaryotic peptide chai 99.8 1.4E-21 4.7E-26 153.7 6.5 160 2-170 39-243 (467)
171 3izq_1 HBS1P, elongation facto 99.8 9.6E-21 3.3E-25 152.9 11.0 157 4-169 165-362 (611)
172 3avx_A Elongation factor TS, e 99.8 8.4E-21 2.9E-25 159.5 10.8 166 3-179 293-486 (1289)
173 1pui_A ENGB, probable GTP-bind 99.8 2.8E-20 9.7E-25 131.7 10.8 163 3-180 23-200 (210)
174 2aka_B Dynamin-1; fusion prote 99.8 2.4E-21 8.2E-26 144.4 5.3 159 5-176 25-250 (299)
175 3def_A T7I23.11 protein; chlor 99.8 6.5E-20 2.2E-24 134.3 11.4 119 4-125 34-166 (262)
176 3mca_A HBS1, elongation factor 99.8 3.3E-21 1.1E-25 155.1 2.9 164 4-177 175-395 (592)
177 1u0l_A Probable GTPase ENGC; p 99.8 2.1E-20 7.2E-25 139.3 6.0 134 21-175 32-169 (301)
178 2dy1_A Elongation factor G; tr 99.8 4.2E-19 1.4E-23 144.9 13.7 116 4-123 7-139 (665)
179 2h5e_A Peptide chain release f 99.8 5.1E-18 1.7E-22 135.0 17.4 116 4-125 11-149 (529)
180 1h65_A Chloroplast outer envel 99.8 1.1E-18 3.7E-23 128.3 12.2 118 5-125 38-169 (270)
181 2j69_A Bacterial dynamin-like 99.8 6.1E-19 2.1E-23 144.5 11.9 171 5-180 68-326 (695)
182 1dar_A EF-G, elongation factor 99.8 3.2E-18 1.1E-22 140.1 14.2 115 4-125 10-144 (691)
183 2qnr_A Septin-2, protein NEDD5 99.8 1E-19 3.5E-24 135.5 4.4 161 6-180 18-215 (301)
184 2xex_A Elongation factor G; GT 99.8 1.3E-17 4.4E-22 136.6 16.0 117 3-125 7-142 (693)
185 1jwy_B Dynamin A GTPase domain 99.8 1.3E-18 4.3E-23 130.7 8.7 114 54-181 131-264 (315)
186 3t34_A Dynamin-related protein 99.8 2.9E-19 9.9E-24 136.5 5.2 155 6-174 34-256 (360)
187 1udx_A The GTP-binding protein 99.8 1.2E-17 4.2E-22 128.8 13.9 159 8-182 159-328 (416)
188 2rdo_7 EF-G, elongation factor 99.8 3.5E-17 1.2E-21 134.2 16.7 117 4-125 8-149 (704)
189 2qag_C Septin-7; cell cycle, c 99.8 5.2E-18 1.8E-22 131.0 10.9 157 6-176 31-224 (418)
190 1wxq_A GTP-binding protein; st 99.7 1.4E-17 4.8E-22 128.2 11.2 84 7-90 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 5E-17 1.7E-21 115.9 10.6 157 4-181 28-216 (221)
192 2hf9_A Probable hydrogenase ni 99.7 5.3E-18 1.8E-22 121.4 2.7 155 4-179 36-224 (226)
193 2x2e_A Dynamin-1; nitration, h 99.7 3.4E-18 1.2E-22 130.2 1.5 158 5-175 30-254 (353)
194 3p32_A Probable GTPase RV1496/ 99.7 4.6E-17 1.6E-21 124.0 7.0 104 54-179 172-284 (355)
195 1n0u_A EF-2, elongation factor 99.7 1.5E-16 5.2E-21 132.8 9.0 118 3-124 16-164 (842)
196 1jal_A YCHF protein; nucleotid 99.7 5.6E-15 1.9E-19 111.8 15.7 83 7-89 3-108 (363)
197 2qpt_A EH domain-containing pr 99.7 1.8E-16 6E-21 126.8 7.5 119 4-125 63-233 (550)
198 3vqt_A RF-3, peptide chain rel 99.6 1.6E-14 5.3E-19 115.5 15.8 114 5-124 30-166 (548)
199 2www_A Methylmalonic aciduria 99.6 1.8E-16 6E-21 120.4 4.4 103 54-178 167-278 (349)
200 1yrb_A ATP(GTP)binding protein 99.6 4.7E-15 1.6E-19 108.3 11.5 118 54-178 109-256 (262)
201 2dby_A GTP-binding protein; GD 99.6 4.7E-14 1.6E-18 107.3 14.4 82 7-89 2-111 (368)
202 2p67_A LAO/AO transport system 99.6 2.4E-15 8.4E-20 113.9 5.8 104 54-178 149-260 (341)
203 2yv5_A YJEQ protein; hydrolase 99.5 5E-14 1.7E-18 104.9 10.1 98 64-175 66-165 (302)
204 4a9a_A Ribosome-interacting GT 99.5 1.4E-13 4.7E-18 104.8 11.6 159 5-171 71-240 (376)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 1.4E-14 4.7E-19 118.7 6.4 158 5-176 50-275 (772)
206 3j25_A Tetracycline resistance 99.5 7.6E-15 2.6E-19 119.4 4.8 115 6-124 2-133 (638)
207 4fn5_A EF-G 1, elongation fact 99.5 9E-13 3.1E-17 108.6 14.0 116 5-124 12-151 (709)
208 2qm8_A GTPase/ATPase; G protei 99.4 1.1E-13 3.7E-18 104.6 4.7 104 54-178 148-260 (337)
209 3l82_B F-box only protein 4; T 99.4 8.5E-14 2.9E-18 96.5 2.2 108 61-181 109-225 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.9E-12 1E-16 97.9 4.5 88 5-92 21-131 (396)
211 3l2o_B F-box only protein 4; s 99.3 3.1E-12 1.1E-16 92.9 3.9 108 61-181 194-310 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 5.5E-10 1.9E-14 85.6 14.5 85 5-89 19-127 (392)
213 3h2y_A GTPase family protein; 99.1 1.7E-10 5.7E-15 88.1 6.9 98 63-177 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 5.3E-10 1.8E-14 85.4 5.8 103 63-178 57-161 (369)
215 3sop_A Neuronal-specific septi 99.0 1.2E-08 4E-13 74.7 12.0 115 6-125 2-155 (270)
216 2qag_B Septin-6, protein NEDD5 98.9 2.5E-08 8.6E-13 77.0 13.2 115 6-125 42-191 (427)
217 3ec1_A YQEH GTPase; atnos1, at 98.9 1.4E-10 4.9E-15 88.5 0.6 138 7-165 163-317 (369)
218 2j37_W Signal recognition part 98.9 1E-09 3.5E-14 86.7 4.1 152 4-176 99-310 (504)
219 1tq4_A IIGP1, interferon-induc 98.9 7.2E-08 2.4E-12 74.4 13.5 168 6-180 69-254 (413)
220 3h2y_A GTPase family protein; 98.8 2.4E-10 8.3E-15 87.2 -1.6 111 7-126 161-289 (368)
221 1puj_A YLQF, conserved hypothe 98.8 4.7E-09 1.6E-13 77.3 5.0 101 58-179 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 5.8E-08 2E-12 71.5 5.6 57 4-65 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 4E-08 1.4E-12 71.5 3.7 56 7-66 100-156 (262)
224 1f5n_A Interferon-induced guan 98.5 1.7E-07 5.8E-12 75.3 5.7 63 4-66 36-103 (592)
225 2v3c_C SRP54, signal recogniti 98.4 2E-07 6.8E-12 72.5 3.8 64 54-124 181-252 (432)
226 3cnl_A YLQF, putative uncharac 98.4 1.5E-07 5.1E-12 68.5 2.7 94 61-176 4-98 (262)
227 3dm5_A SRP54, signal recogniti 98.3 1.1E-06 3.9E-11 68.2 6.0 86 54-160 183-274 (443)
228 1t9h_A YLOQ, probable GTPase E 98.3 9.7E-07 3.3E-11 65.5 5.0 91 69-172 78-170 (307)
229 3szr_A Interferon-induced GTP- 98.1 3.1E-06 1.1E-10 68.7 5.2 24 7-30 46-69 (608)
230 1j8m_F SRP54, signal recogniti 98.0 2.5E-06 8.5E-11 63.2 2.4 90 54-167 181-279 (297)
231 1bif_A 6-phosphofructo-2-kinas 98.0 2.5E-07 8.6E-12 72.9 -3.2 108 5-117 38-156 (469)
232 2rcn_A Probable GTPase ENGC; Y 97.9 8.5E-05 2.9E-09 56.2 10.2 86 74-173 127-213 (358)
233 3kl4_A SRP54, signal recogniti 97.9 1.3E-05 4.6E-10 62.1 5.7 86 54-160 180-273 (433)
234 3q5d_A Atlastin-1; G protein, 97.7 7E-05 2.4E-09 58.4 6.4 25 4-28 65-89 (447)
235 3asz_A Uridine kinase; cytidin 97.6 4E-05 1.4E-09 53.6 3.4 28 1-28 1-28 (211)
236 1ye8_A Protein THEP1, hypothet 97.6 4.6E-05 1.6E-09 52.0 3.4 23 7-29 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.5 4.9E-05 1.7E-09 51.9 3.2 22 8-29 7-28 (180)
238 3ney_A 55 kDa erythrocyte memb 97.5 6.5E-05 2.2E-09 52.1 3.7 27 3-29 16-42 (197)
239 4eun_A Thermoresistant glucoki 97.5 7.5E-05 2.6E-09 51.9 3.5 28 1-28 24-51 (200)
240 1t9h_A YLOQ, probable GTPase E 97.5 4.1E-05 1.4E-09 56.8 2.2 23 7-29 174-196 (307)
241 1lvg_A Guanylate kinase, GMP k 97.5 6.6E-05 2.3E-09 52.1 3.2 21 8-28 6-26 (198)
242 2j41_A Guanylate kinase; GMP, 97.5 8.5E-05 2.9E-09 51.6 3.5 30 1-30 1-30 (207)
243 1y63_A LMAJ004144AAA protein; 97.4 9.8E-05 3.4E-09 50.6 3.6 29 1-29 5-33 (184)
244 2yv5_A YJEQ protein; hydrolase 97.4 0.00044 1.5E-08 51.3 7.3 20 8-27 167-186 (302)
245 3tau_A Guanylate kinase, GMP k 97.4 0.00011 3.9E-09 51.3 3.7 23 7-29 9-31 (208)
246 1ex7_A Guanylate kinase; subst 97.4 9.8E-05 3.3E-09 50.7 3.2 21 9-29 4-24 (186)
247 1qf9_A UMP/CMP kinase, protein 97.4 0.00014 4.9E-09 49.8 3.9 28 1-28 1-28 (194)
248 3a00_A Guanylate kinase, GMP k 97.4 0.00011 3.8E-09 50.4 3.1 21 9-29 4-24 (186)
249 1s96_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 51.8 3.1 22 8-29 18-39 (219)
250 3tr0_A Guanylate kinase, GMP k 97.3 0.00013 4.3E-09 50.7 3.1 22 8-29 9-30 (205)
251 4gp7_A Metallophosphoesterase; 97.3 0.00011 3.7E-09 49.8 2.6 20 8-27 11-30 (171)
252 1knq_A Gluconate kinase; ALFA/ 97.3 0.00021 7.2E-09 48.3 4.0 24 5-28 7-30 (175)
253 1z6g_A Guanylate kinase; struc 97.3 0.00014 4.9E-09 51.2 3.1 22 8-29 25-46 (218)
254 1znw_A Guanylate kinase, GMP k 97.3 0.00015 5E-09 50.7 3.1 22 8-29 22-43 (207)
255 1zp6_A Hypothetical protein AT 97.3 0.00019 6.3E-09 49.3 3.5 24 6-29 9-32 (191)
256 1nn5_A Similar to deoxythymidy 97.3 0.00018 6E-09 50.3 3.2 28 1-28 4-31 (215)
257 3c8u_A Fructokinase; YP_612366 97.3 0.00021 7.1E-09 49.9 3.5 24 5-28 21-44 (208)
258 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.6E-09 49.9 3.1 23 7-29 13-35 (204)
259 3tif_A Uncharacterized ABC tra 97.2 0.00023 7.8E-09 50.8 3.0 22 8-29 33-54 (235)
260 1htw_A HI0065; nucleotide-bind 97.2 0.00027 9.2E-09 47.2 3.1 23 8-30 35-57 (158)
261 3lw7_A Adenylate kinase relate 97.1 0.00028 9.6E-09 47.4 3.2 20 7-26 2-21 (179)
262 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.5E-09 47.6 3.1 23 7-29 5-27 (173)
263 1ukz_A Uridylate kinase; trans 97.1 0.0004 1.4E-08 48.1 4.0 26 3-28 12-37 (203)
264 3kb2_A SPBC2 prophage-derived 97.1 0.00031 1.1E-08 47.2 3.3 21 8-28 3-23 (173)
265 3fb4_A Adenylate kinase; psych 97.1 0.00029 1E-08 49.3 3.2 22 7-28 1-22 (216)
266 2bdt_A BH3686; alpha-beta prot 97.1 0.00029 9.9E-09 48.3 3.1 21 8-28 4-24 (189)
267 1zd8_A GTP:AMP phosphotransfer 97.1 0.00028 9.5E-09 49.9 3.1 25 4-28 5-29 (227)
268 1ly1_A Polynucleotide kinase; 97.1 0.00032 1.1E-08 47.5 3.2 22 7-28 3-24 (181)
269 3dl0_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 49.2 3.2 22 7-28 1-22 (216)
270 2cdn_A Adenylate kinase; phosp 97.1 0.00044 1.5E-08 47.9 3.9 25 4-28 18-42 (201)
271 2bbw_A Adenylate kinase 4, AK4 97.1 0.00037 1.3E-08 50.0 3.5 22 6-27 27-48 (246)
272 3vaa_A Shikimate kinase, SK; s 97.1 0.0004 1.4E-08 48.1 3.5 22 7-28 26-47 (199)
273 2pcj_A ABC transporter, lipopr 97.1 0.0003 1E-08 49.9 2.8 22 8-29 32-53 (224)
274 3uie_A Adenylyl-sulfate kinase 97.1 0.0003 1E-08 48.8 2.8 24 5-28 24-47 (200)
275 2i3b_A HCR-ntpase, human cance 97.1 0.00034 1.2E-08 48.2 3.0 21 8-28 3-23 (189)
276 1np6_A Molybdopterin-guanine d 97.0 0.00038 1.3E-08 47.3 3.1 23 7-29 7-29 (174)
277 2jaq_A Deoxyguanosine kinase; 97.0 0.00041 1.4E-08 48.0 3.4 21 8-28 2-22 (205)
278 2eyu_A Twitching motility prot 97.0 0.00036 1.2E-08 50.6 3.2 21 8-28 27-47 (261)
279 2onk_A Molybdate/tungstate ABC 97.0 0.00037 1.3E-08 49.9 3.2 22 8-29 26-47 (240)
280 2rcn_A Probable GTPase ENGC; Y 97.0 0.00037 1.3E-08 52.7 3.3 23 8-30 217-239 (358)
281 2v54_A DTMP kinase, thymidylat 97.0 0.00054 1.9E-08 47.4 3.9 25 5-29 3-27 (204)
282 3sr0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 48.3 3.3 22 7-28 1-22 (206)
283 3cm0_A Adenylate kinase; ATP-b 97.0 0.00049 1.7E-08 46.9 3.6 24 5-28 3-26 (186)
284 2cbz_A Multidrug resistance-as 97.0 0.00041 1.4E-08 49.5 3.2 22 8-29 33-54 (237)
285 3gfo_A Cobalt import ATP-bindi 97.0 0.00038 1.3E-08 50.9 3.1 22 8-29 36-57 (275)
286 1b0u_A Histidine permease; ABC 97.0 0.00038 1.3E-08 50.5 3.1 22 8-29 34-55 (262)
287 1sgw_A Putative ABC transporte 97.0 0.0004 1.4E-08 48.8 3.1 22 8-29 37-58 (214)
288 1qhx_A CPT, protein (chloramph 97.0 0.0004 1.4E-08 47.0 3.0 23 7-29 4-26 (178)
289 3tlx_A Adenylate kinase 2; str 97.0 0.00054 1.8E-08 49.1 3.8 25 4-28 27-51 (243)
290 3t61_A Gluconokinase; PSI-biol 97.0 0.00041 1.4E-08 48.1 3.1 22 7-28 19-40 (202)
291 1uj2_A Uridine-cytidine kinase 97.0 0.00048 1.6E-08 49.6 3.5 28 1-28 17-44 (252)
292 3iij_A Coilin-interacting nucl 97.0 0.00051 1.7E-08 46.6 3.5 23 6-28 11-33 (180)
293 1cke_A CK, MSSA, protein (cyti 97.0 0.00053 1.8E-08 48.3 3.6 22 7-28 6-27 (227)
294 2v9p_A Replication protein E1; 97.0 0.00045 1.5E-08 51.2 3.3 21 8-28 128-148 (305)
295 2plr_A DTMP kinase, probable t 97.0 0.00059 2E-08 47.4 3.8 23 6-28 4-26 (213)
296 4g1u_C Hemin import ATP-bindin 97.0 0.0004 1.4E-08 50.5 3.0 22 8-29 39-60 (266)
297 2rhm_A Putative kinase; P-loop 97.0 0.00054 1.9E-08 46.9 3.5 23 6-28 5-27 (193)
298 1mv5_A LMRA, multidrug resista 97.0 0.00047 1.6E-08 49.4 3.3 22 8-29 30-51 (243)
299 2ff7_A Alpha-hemolysin translo 97.0 0.00047 1.6E-08 49.6 3.2 22 8-29 37-58 (247)
300 1gvn_B Zeta; postsegregational 97.0 0.00059 2E-08 50.2 3.8 25 4-28 31-55 (287)
301 1g6h_A High-affinity branched- 97.0 0.00043 1.5E-08 50.1 3.0 22 8-29 35-56 (257)
302 1nks_A Adenylate kinase; therm 97.0 0.00051 1.7E-08 47.0 3.3 22 7-28 2-23 (194)
303 1aky_A Adenylate kinase; ATP:A 97.0 0.00056 1.9E-08 48.1 3.5 24 5-28 3-26 (220)
304 2pze_A Cystic fibrosis transme 97.0 0.00051 1.7E-08 48.8 3.3 22 8-29 36-57 (229)
305 1kht_A Adenylate kinase; phosp 97.0 0.00056 1.9E-08 46.8 3.4 22 7-28 4-25 (192)
306 2olj_A Amino acid ABC transpor 97.0 0.00046 1.6E-08 50.1 3.1 22 8-29 52-73 (263)
307 1e4v_A Adenylate kinase; trans 97.0 0.00049 1.7E-08 48.2 3.1 22 7-28 1-22 (214)
308 2if2_A Dephospho-COA kinase; a 96.9 0.00052 1.8E-08 47.6 3.2 22 7-28 2-23 (204)
309 1ji0_A ABC transporter; ATP bi 96.9 0.00048 1.6E-08 49.3 3.0 22 8-29 34-55 (240)
310 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00051 1.7E-08 49.5 3.1 22 8-29 31-52 (250)
311 2ghi_A Transport protein; mult 96.9 0.00054 1.8E-08 49.7 3.2 22 8-29 48-69 (260)
312 3b85_A Phosphate starvation-in 96.9 0.00046 1.6E-08 48.3 2.7 22 8-29 24-45 (208)
313 1vpl_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 49.6 3.1 22 8-29 43-64 (256)
314 2qi9_C Vitamin B12 import ATP- 96.9 0.00052 1.8E-08 49.4 3.1 22 8-29 28-49 (249)
315 2vli_A Antibiotic resistance p 96.9 0.00039 1.3E-08 47.3 2.3 25 4-28 3-27 (183)
316 3be4_A Adenylate kinase; malar 96.9 0.00059 2E-08 47.9 3.2 25 4-28 3-27 (217)
317 3aez_A Pantothenate kinase; tr 96.9 0.00077 2.6E-08 50.2 4.0 25 4-28 88-112 (312)
318 2ixe_A Antigen peptide transpo 96.9 0.00053 1.8E-08 50.0 3.0 22 8-29 47-68 (271)
319 1odf_A YGR205W, hypothetical 3 96.9 0.0008 2.7E-08 49.6 4.0 24 4-27 29-52 (290)
320 2zu0_C Probable ATP-dependent 96.9 0.00058 2E-08 49.7 3.2 22 8-29 48-69 (267)
321 3tqc_A Pantothenate kinase; bi 96.9 0.00082 2.8E-08 50.2 4.0 25 4-28 90-114 (321)
322 3ec2_A DNA replication protein 96.9 0.00064 2.2E-08 46.2 3.2 22 7-28 39-60 (180)
323 2f1r_A Molybdopterin-guanine d 96.9 0.00027 9.2E-09 47.9 1.3 22 8-29 4-25 (171)
324 1rz3_A Hypothetical protein rb 96.9 0.00084 2.9E-08 46.6 3.8 25 4-28 20-44 (201)
325 1zak_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 48.2 3.0 24 5-28 4-27 (222)
326 3trf_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 46.3 3.2 22 7-28 6-27 (185)
327 1vht_A Dephospho-COA kinase; s 96.9 0.00075 2.6E-08 47.3 3.6 23 6-28 4-26 (218)
328 1tev_A UMP-CMP kinase; ploop, 96.9 0.00076 2.6E-08 46.2 3.6 23 6-28 3-25 (196)
329 2ihy_A ABC transporter, ATP-bi 96.9 0.00064 2.2E-08 49.8 3.3 22 8-29 49-70 (279)
330 1u0l_A Probable GTPase ENGC; p 96.9 0.00074 2.5E-08 50.0 3.6 23 8-30 171-193 (301)
331 2ehv_A Hypothetical protein PH 96.9 0.00061 2.1E-08 48.6 3.1 20 8-27 32-51 (251)
332 2chg_A Replication factor C sm 96.9 0.00054 1.8E-08 47.7 2.8 21 8-28 40-60 (226)
333 2jeo_A Uridine-cytidine kinase 96.9 0.00079 2.7E-08 48.2 3.7 24 5-28 24-47 (245)
334 2nq2_C Hypothetical ABC transp 96.9 0.0006 2.1E-08 49.2 3.0 22 8-29 33-54 (253)
335 3lnc_A Guanylate kinase, GMP k 96.9 0.00041 1.4E-08 49.2 2.1 23 7-29 28-51 (231)
336 2pt5_A Shikimate kinase, SK; a 96.9 0.00073 2.5E-08 45.2 3.2 22 7-28 1-22 (168)
337 1jjv_A Dephospho-COA kinase; P 96.9 0.00078 2.7E-08 46.8 3.5 22 7-28 3-24 (206)
338 2yz2_A Putative ABC transporte 96.8 0.00064 2.2E-08 49.4 3.0 22 8-29 35-56 (266)
339 2wwf_A Thymidilate kinase, put 96.8 0.00083 2.8E-08 46.7 3.5 24 5-28 9-32 (212)
340 2c95_A Adenylate kinase 1; tra 96.8 0.00075 2.6E-08 46.3 3.2 24 5-28 8-31 (196)
341 1xjc_A MOBB protein homolog; s 96.8 0.00089 3.1E-08 45.2 3.4 23 6-28 4-26 (169)
342 2qt1_A Nicotinamide riboside k 96.8 0.00099 3.4E-08 46.3 3.7 25 5-29 20-44 (207)
343 2xb4_A Adenylate kinase; ATP-b 96.8 0.00083 2.8E-08 47.4 3.4 22 7-28 1-22 (223)
344 2pjz_A Hypothetical protein ST 96.8 0.0008 2.7E-08 48.8 3.3 23 8-30 32-54 (263)
345 4a74_A DNA repair and recombin 96.8 0.00069 2.3E-08 47.7 2.9 22 8-29 27-48 (231)
346 4e22_A Cytidylate kinase; P-lo 96.8 0.00098 3.4E-08 48.0 3.7 21 7-27 28-48 (252)
347 1via_A Shikimate kinase; struc 96.8 0.00074 2.5E-08 45.6 2.9 21 8-28 6-26 (175)
348 1uf9_A TT1252 protein; P-loop, 96.8 0.00096 3.3E-08 46.0 3.5 26 4-29 6-31 (203)
349 3n70_A Transport activator; si 96.8 0.0011 3.6E-08 43.5 3.5 25 6-30 24-48 (145)
350 1sxj_E Activator 1 40 kDa subu 96.8 0.0022 7.4E-08 48.3 5.7 21 8-28 38-58 (354)
351 1lw7_A Transcriptional regulat 96.8 0.00068 2.3E-08 51.6 2.9 24 6-29 170-193 (365)
352 3jvv_A Twitching mobility prot 96.8 0.00078 2.7E-08 51.1 3.1 21 8-28 125-145 (356)
353 3nh6_A ATP-binding cassette SU 96.8 0.00053 1.8E-08 50.9 2.1 22 8-29 82-103 (306)
354 1rj9_A FTSY, signal recognitio 96.8 0.00084 2.9E-08 49.8 3.1 22 6-27 102-123 (304)
355 2kjq_A DNAA-related protein; s 96.8 0.00064 2.2E-08 44.9 2.2 22 8-29 38-59 (149)
356 2yvu_A Probable adenylyl-sulfa 96.7 0.0014 4.9E-08 44.7 4.0 24 5-28 12-35 (186)
357 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4.1E-08 46.9 3.6 24 5-28 15-38 (233)
358 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 44.9 3.4 22 7-28 44-65 (195)
359 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.9E-08 45.3 3.3 21 8-28 2-22 (195)
360 2p5t_B PEZT; postsegregational 96.7 0.00087 3E-08 48.3 2.8 24 5-28 31-54 (253)
361 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00089 3.1E-08 50.7 2.9 22 9-30 33-54 (359)
362 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 45.3 3.3 21 8-28 2-22 (197)
363 2bbs_A Cystic fibrosis transme 96.7 0.001 3.4E-08 49.0 3.0 22 8-29 66-87 (290)
364 3tui_C Methionine import ATP-b 96.7 0.0011 3.6E-08 50.4 3.2 21 9-29 57-77 (366)
365 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0013 4.4E-08 47.6 3.5 23 6-28 4-26 (260)
366 1z47_A CYSA, putative ABC-tran 96.7 0.0011 3.6E-08 50.3 3.1 22 8-29 43-64 (355)
367 2ewv_A Twitching motility prot 96.7 0.0011 3.9E-08 50.5 3.3 21 8-28 138-158 (372)
368 2bwj_A Adenylate kinase 5; pho 96.7 0.00091 3.1E-08 46.0 2.6 23 6-28 12-34 (199)
369 1sq5_A Pantothenate kinase; P- 96.6 0.0014 4.7E-08 48.7 3.6 24 5-28 79-102 (308)
370 2gza_A Type IV secretion syste 96.6 0.00095 3.3E-08 50.7 2.8 22 8-29 177-198 (361)
371 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.8E-08 50.2 3.1 22 8-29 31-52 (359)
372 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.9E-08 50.5 3.2 23 8-30 31-53 (381)
373 2x8a_A Nuclear valosin-contain 96.6 0.0012 3.9E-08 48.3 3.1 21 9-29 47-67 (274)
374 2f6r_A COA synthase, bifunctio 96.6 0.0014 4.9E-08 48.0 3.6 25 4-28 73-97 (281)
375 1gtv_A TMK, thymidylate kinase 96.6 0.00041 1.4E-08 48.4 0.7 21 8-28 2-22 (214)
376 2ze6_A Isopentenyl transferase 96.6 0.0012 4.2E-08 47.6 3.2 21 8-28 3-23 (253)
377 2it1_A 362AA long hypothetical 96.6 0.0012 4E-08 50.2 3.2 22 8-29 31-52 (362)
378 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.5E-08 49.9 2.8 23 8-30 173-195 (330)
379 1ixz_A ATP-dependent metallopr 96.6 0.0012 4.2E-08 47.4 3.2 21 9-29 52-72 (254)
380 3e70_C DPA, signal recognition 96.6 0.0018 6E-08 48.6 4.0 24 5-28 128-151 (328)
381 1a7j_A Phosphoribulokinase; tr 96.6 0.00072 2.5E-08 49.8 1.9 27 1-28 1-27 (290)
382 1v43_A Sugar-binding transport 96.6 0.0013 4.4E-08 50.2 3.2 22 8-29 39-60 (372)
383 1g29_1 MALK, maltose transport 96.6 0.0013 4.3E-08 50.2 3.1 21 9-29 32-52 (372)
384 2vp4_A Deoxynucleoside kinase; 96.6 0.0014 4.8E-08 46.5 3.2 25 5-29 19-43 (230)
385 3b9q_A Chloroplast SRP recepto 96.6 0.0021 7.1E-08 47.6 4.2 22 7-28 101-122 (302)
386 1e6c_A Shikimate kinase; phosp 96.6 0.0014 4.9E-08 44.0 3.0 21 8-28 4-24 (173)
387 3r20_A Cytidylate kinase; stru 96.6 0.0016 5.4E-08 46.4 3.3 24 5-28 8-31 (233)
388 2pez_A Bifunctional 3'-phospho 96.6 0.0019 6.6E-08 43.7 3.6 24 5-28 4-27 (179)
389 1p9r_A General secretion pathw 96.6 0.0013 4.5E-08 50.9 3.1 22 8-29 169-190 (418)
390 3kta_A Chromosome segregation 96.5 0.0015 5E-08 44.4 2.9 21 8-28 28-48 (182)
391 3umf_A Adenylate kinase; rossm 96.5 0.0017 5.8E-08 45.7 3.2 20 9-28 32-51 (217)
392 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.6E-08 44.2 3.0 21 8-28 4-24 (184)
393 4eaq_A DTMP kinase, thymidylat 96.5 0.0025 8.4E-08 45.2 4.0 24 5-28 25-48 (229)
394 1zuh_A Shikimate kinase; alpha 96.5 0.002 6.7E-08 43.2 3.2 22 7-28 8-29 (168)
395 2p65_A Hypothetical protein PF 96.5 0.0014 4.6E-08 44.4 2.5 23 6-28 43-65 (187)
396 1iy2_A ATP-dependent metallopr 96.5 0.0018 6E-08 47.3 3.2 21 9-29 76-96 (278)
397 3d31_A Sulfate/molybdate ABC t 96.5 0.0011 3.7E-08 50.1 2.0 22 8-29 28-49 (348)
398 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0018 6.2E-08 45.5 3.1 21 8-28 25-45 (235)
399 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0067 2.3E-07 47.3 6.3 24 4-27 65-88 (457)
400 2oap_1 GSPE-2, type II secreti 96.4 0.0016 5.5E-08 51.8 3.0 23 8-30 262-284 (511)
401 3gd7_A Fusion complex of cysti 96.4 0.0017 5.7E-08 49.9 2.9 22 8-29 49-70 (390)
402 1in4_A RUVB, holliday junction 96.4 0.0019 6.5E-08 48.5 3.1 23 7-29 52-74 (334)
403 2og2_A Putative signal recogni 96.4 0.003 1E-07 47.9 4.1 22 7-28 158-179 (359)
404 3bos_A Putative DNA replicatio 96.4 0.0023 7.9E-08 45.2 3.3 23 6-28 52-74 (242)
405 3crm_A TRNA delta(2)-isopenten 96.4 0.0028 9.5E-08 47.3 3.8 27 1-28 1-27 (323)
406 1m7g_A Adenylylsulfate kinase; 96.4 0.0029 9.9E-08 44.1 3.7 24 5-28 24-47 (211)
407 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0018 6E-08 50.9 2.8 23 7-29 139-161 (460)
408 2w58_A DNAI, primosome compone 96.4 0.0025 8.7E-08 44.0 3.3 23 7-29 55-77 (202)
409 3nwj_A ATSK2; P loop, shikimat 96.3 0.0021 7.3E-08 46.2 3.0 22 7-28 49-70 (250)
410 1lv7_A FTSH; alpha/beta domain 96.3 0.0023 7.8E-08 46.0 3.1 22 7-28 46-67 (257)
411 2yhs_A FTSY, cell division pro 96.3 0.0031 1.1E-07 49.7 4.0 21 7-27 294-314 (503)
412 1oxx_K GLCV, glucose, ABC tran 96.3 0.0011 3.7E-08 50.2 1.3 22 8-29 33-54 (353)
413 1ltq_A Polynucleotide kinase; 96.3 0.0033 1.1E-07 46.3 3.8 22 7-28 3-24 (301)
414 3d3q_A TRNA delta(2)-isopenten 96.3 0.003 1E-07 47.4 3.5 22 7-28 8-29 (340)
415 1nij_A Hypothetical protein YJ 96.3 0.0024 8.3E-08 47.6 3.0 25 6-30 4-28 (318)
416 2grj_A Dephospho-COA kinase; T 96.3 0.0034 1.2E-07 43.3 3.5 24 6-29 12-35 (192)
417 1cr0_A DNA primase/helicase; R 96.2 0.0024 8.4E-08 46.9 2.9 22 8-29 37-58 (296)
418 2cvh_A DNA repair and recombin 96.2 0.0029 9.8E-08 44.2 3.1 21 8-28 22-42 (220)
419 1n0w_A DNA repair protein RAD5 96.2 0.003 1E-07 44.8 3.2 22 8-29 26-47 (243)
420 3ld9_A DTMP kinase, thymidylat 96.2 0.004 1.4E-07 44.0 3.7 28 1-28 16-43 (223)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0036 1.2E-07 41.3 3.1 19 9-27 26-44 (149)
422 2obl_A ESCN; ATPase, hydrolase 96.1 0.0033 1.1E-07 47.5 3.2 23 8-30 73-95 (347)
423 2qmh_A HPR kinase/phosphorylas 96.1 0.0035 1.2E-07 43.3 3.0 24 7-30 35-58 (205)
424 3syl_A Protein CBBX; photosynt 96.1 0.0041 1.4E-07 45.9 3.7 23 5-27 66-88 (309)
425 1njg_A DNA polymerase III subu 96.1 0.0034 1.2E-07 44.2 3.1 21 8-28 47-67 (250)
426 3ake_A Cytidylate kinase; CMP 96.1 0.0047 1.6E-07 42.7 3.7 21 8-28 4-24 (208)
427 1svm_A Large T antigen; AAA+ f 96.1 0.0034 1.2E-07 47.9 3.1 22 7-28 170-191 (377)
428 3zvl_A Bifunctional polynucleo 96.1 0.005 1.7E-07 47.7 4.0 25 5-29 257-281 (416)
429 3euj_A Chromosome partition pr 96.1 0.0036 1.2E-07 49.3 3.2 21 8-28 31-51 (483)
430 1q3t_A Cytidylate kinase; nucl 96.1 0.0048 1.7E-07 43.8 3.6 25 4-28 14-38 (236)
431 1yqt_A RNAse L inhibitor; ATP- 96.0 0.004 1.4E-07 49.9 3.4 22 8-29 49-70 (538)
432 3h4m_A Proteasome-activating n 96.0 0.0045 1.5E-07 45.1 3.3 24 6-29 51-74 (285)
433 3b60_A Lipid A export ATP-bind 96.0 0.0038 1.3E-07 50.5 3.1 22 8-29 371-392 (582)
434 3tqf_A HPR(Ser) kinase; transf 96.0 0.0052 1.8E-07 41.5 3.2 23 8-30 18-40 (181)
435 3b9p_A CG5977-PA, isoform A; A 96.0 0.0041 1.4E-07 45.6 3.0 24 6-29 54-77 (297)
436 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0045 1.5E-07 44.4 3.2 22 7-28 40-61 (262)
437 2dpy_A FLII, flagellum-specifi 96.0 0.0043 1.5E-07 48.4 3.2 23 8-30 159-181 (438)
438 3b5x_A Lipid A export ATP-bind 95.9 0.0044 1.5E-07 50.1 3.2 22 8-29 371-392 (582)
439 1d2n_A N-ethylmaleimide-sensit 95.9 0.0078 2.7E-07 43.6 4.2 26 4-29 62-87 (272)
440 1tue_A Replication protein E1; 95.9 0.0039 1.3E-07 43.3 2.5 21 8-28 60-80 (212)
441 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0074 2.5E-07 45.6 4.1 23 5-27 23-45 (359)
442 3t15_A Ribulose bisphosphate c 95.9 0.0054 1.9E-07 45.1 3.3 24 6-29 36-59 (293)
443 1l8q_A Chromosomal replication 95.9 0.0047 1.6E-07 46.0 3.1 22 7-28 38-59 (324)
444 2px0_A Flagellar biosynthesis 95.9 0.0043 1.5E-07 45.8 2.7 21 7-27 106-126 (296)
445 3cf0_A Transitional endoplasmi 95.9 0.0049 1.7E-07 45.5 3.1 23 7-29 50-72 (301)
446 1p5z_B DCK, deoxycytidine kina 95.9 0.0038 1.3E-07 45.1 2.3 25 5-29 23-47 (263)
447 3ozx_A RNAse L inhibitor; ATP 95.9 0.0048 1.6E-07 49.4 3.1 22 8-29 27-48 (538)
448 1nlf_A Regulatory protein REPA 95.9 0.0048 1.6E-07 45.0 2.9 21 8-28 32-52 (279)
449 3j16_B RLI1P; ribosome recycli 95.9 0.0049 1.7E-07 50.0 3.2 22 8-29 105-126 (608)
450 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0053 1.8E-07 46.7 3.1 19 9-27 26-44 (365)
451 3gmt_A Adenylate kinase; ssgci 95.8 0.0066 2.3E-07 43.0 3.4 24 5-28 7-30 (230)
452 2yl4_A ATP-binding cassette SU 95.8 0.004 1.4E-07 50.5 2.5 22 8-29 372-393 (595)
453 1vma_A Cell division protein F 95.8 0.0084 2.9E-07 44.4 4.0 21 7-27 105-125 (306)
454 3foz_A TRNA delta(2)-isopenten 95.8 0.008 2.7E-07 44.5 3.9 23 7-29 11-33 (316)
455 3qf4_B Uncharacterized ABC tra 95.8 0.0043 1.5E-07 50.4 2.6 22 8-29 383-404 (598)
456 4fcw_A Chaperone protein CLPB; 95.8 0.0079 2.7E-07 44.3 3.9 23 7-29 48-70 (311)
457 2ocp_A DGK, deoxyguanosine kin 95.8 0.0068 2.3E-07 43.1 3.4 24 6-29 2-25 (241)
458 2qby_A CDC6 homolog 1, cell di 95.8 0.0053 1.8E-07 46.5 2.9 23 6-28 45-67 (386)
459 3bk7_A ABC transporter ATP-bin 95.7 0.0062 2.1E-07 49.5 3.3 22 8-29 119-140 (607)
460 2dr3_A UPF0273 protein PH0284; 95.7 0.006 2E-07 43.3 2.9 21 8-28 25-45 (247)
461 1fnn_A CDC6P, cell division co 95.7 0.0069 2.3E-07 46.0 3.4 22 8-29 46-67 (389)
462 1ofh_A ATP-dependent HSL prote 95.7 0.0066 2.3E-07 44.6 3.2 23 6-28 50-72 (310)
463 4a82_A Cystic fibrosis transme 95.7 0.0037 1.3E-07 50.6 1.9 22 8-29 369-390 (578)
464 3exa_A TRNA delta(2)-isopenten 95.7 0.0072 2.5E-07 44.9 3.3 23 7-29 4-26 (322)
465 3co5_A Putative two-component 95.7 0.0033 1.1E-07 41.0 1.3 23 7-29 28-50 (143)
466 3ozx_A RNAse L inhibitor; ATP 95.7 0.0064 2.2E-07 48.7 3.1 22 8-29 296-317 (538)
467 3qf4_A ABC transporter, ATP-bi 95.7 0.0048 1.6E-07 50.0 2.3 22 8-29 371-392 (587)
468 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0077 2.6E-07 48.2 3.4 22 8-29 314-335 (538)
469 3a8t_A Adenylate isopentenyltr 95.6 0.01 3.5E-07 44.5 3.8 23 7-29 41-63 (339)
470 1sxj_C Activator 1 40 kDa subu 95.6 0.0074 2.5E-07 45.3 3.1 22 8-29 48-69 (340)
471 3bk7_A ABC transporter ATP-bin 95.6 0.0081 2.8E-07 48.8 3.4 22 8-29 384-405 (607)
472 2h92_A Cytidylate kinase; ross 95.6 0.0083 2.9E-07 41.9 3.1 23 6-28 3-25 (219)
473 3qks_A DNA double-strand break 95.5 0.0092 3.1E-07 41.4 3.1 19 9-27 26-44 (203)
474 1c9k_A COBU, adenosylcobinamid 95.5 0.0083 2.8E-07 40.8 2.8 21 9-29 2-22 (180)
475 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0084 2.9E-07 44.7 3.0 23 7-29 46-68 (322)
476 4edh_A DTMP kinase, thymidylat 95.5 0.0094 3.2E-07 41.7 3.1 23 6-28 6-28 (213)
477 2qen_A Walker-type ATPase; unk 95.5 0.0087 3E-07 44.7 3.2 22 8-29 33-54 (350)
478 2qgz_A Helicase loader, putati 95.5 0.0097 3.3E-07 44.1 3.3 23 6-28 152-174 (308)
479 1pzn_A RAD51, DNA repair and r 95.5 0.0081 2.8E-07 45.4 2.9 22 8-29 133-154 (349)
480 3eie_A Vacuolar protein sortin 95.5 0.0095 3.2E-07 44.4 3.2 23 7-29 52-74 (322)
481 3j16_B RLI1P; ribosome recycli 95.4 0.0088 3E-07 48.6 3.2 22 9-30 381-402 (608)
482 3pfi_A Holliday junction ATP-d 95.4 0.01 3.5E-07 44.4 3.3 24 6-29 55-78 (338)
483 2v1u_A Cell division control p 95.4 0.0096 3.3E-07 45.1 3.2 24 5-28 43-66 (387)
484 3pxg_A Negative regulator of g 95.4 0.0084 2.9E-07 47.2 2.9 23 6-28 201-223 (468)
485 3u61_B DNA polymerase accessor 95.4 0.098 3.3E-06 38.7 8.6 43 79-122 105-148 (324)
486 1sxj_D Activator 1 41 kDa subu 95.4 0.0098 3.4E-07 44.6 3.1 21 8-28 60-80 (353)
487 3v9p_A DTMP kinase, thymidylat 95.4 0.0076 2.6E-07 42.7 2.3 24 5-28 24-47 (227)
488 2r62_A Cell division protease 95.4 0.0043 1.5E-07 44.8 1.0 21 8-28 46-66 (268)
489 2fna_A Conserved hypothetical 95.4 0.0091 3.1E-07 44.7 2.9 22 8-29 32-53 (357)
490 2bjv_A PSP operon transcriptio 95.4 0.01 3.5E-07 42.8 3.0 24 7-30 30-53 (265)
491 1ko7_A HPR kinase/phosphatase; 95.3 0.012 4E-07 43.7 3.3 24 7-30 145-168 (314)
492 3uk6_A RUVB-like 2; hexameric 95.3 0.01 3.6E-07 44.8 3.1 23 7-29 71-93 (368)
493 2iw3_A Elongation factor 3A; a 95.3 0.012 4.2E-07 50.2 3.7 24 8-31 463-486 (986)
494 3cr8_A Sulfate adenylyltranfer 95.3 0.0066 2.3E-07 48.7 1.9 24 6-29 369-392 (552)
495 2r8r_A Sensor protein; KDPD, P 95.3 0.016 5.5E-07 40.9 3.7 21 4-24 4-24 (228)
496 1tf7_A KAIC; homohexamer, hexa 95.3 0.0096 3.3E-07 47.5 2.8 19 8-26 41-59 (525)
497 1um8_A ATP-dependent CLP prote 95.2 0.012 4.1E-07 44.8 3.2 24 6-29 72-95 (376)
498 4ag6_A VIRB4 ATPase, type IV s 95.2 0.011 3.9E-07 45.2 3.0 25 5-29 34-58 (392)
499 2z4s_A Chromosomal replication 95.2 0.011 3.9E-07 46.0 3.1 22 7-28 131-152 (440)
500 3d8b_A Fidgetin-like protein 1 95.2 0.013 4.3E-07 44.4 3.2 24 6-29 117-140 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.5e-43 Score=248.44 Aligned_cols=165 Identities=32% Similarity=0.524 Sum_probs=139.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+|+|.+|||||||+++|..+.|...+.+|.+ +.......+++..+.+++|||+|+++|..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4668999999999999999999999999999999986 445667778888999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++++|+.+ ..|+..+.... +++|++|||||+|+.+.+. ++.++++++++.+++ +|++|||+
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk 158 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK 158 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence 99999999999999 77887777655 7899999999999987654 889999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.||+++|+.|++.+...
T Consensus 159 tg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp TTBSHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999987653
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-39 Score=230.76 Aligned_cols=195 Identities=77% Similarity=1.240 Sum_probs=154.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.|..++..++.++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 77888999999999999999999999999998888888887777777788888999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|+|||++++++++.+...|+..+....++.|+++|+||+|+.+....... ....+..+++..++..++..+++++||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999855899999888789999999999999765431111 111346788889999998668999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCchhh----hhhccccccccC
Q 036449 161 KTQQNVKAVFDAAIRVVLQPPKTKK----KKNKAQKACSIL 197 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~~~~~----~~~~~~~~c~~~ 197 (197)
++|.|++++|++|++.+.+....+. ++++++..|+++
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 202 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA 202 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence 9999999999999999988765543 334444578764
No 3
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=220.44 Aligned_cols=181 Identities=28% Similarity=0.491 Sum_probs=143.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 56678899999999999999999999999998888888887776666677777889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 68888877653 5799999999999976544 677888999999998 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL 197 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
||++|.|++++|++|.+.+....... +++..|.+|
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~~~----~~~~~c~l~ 201 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVENSY----GQERRCHLM 201 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhhhh----ccccccccC
Confidence 99999999999999999987664443 345558876
No 4
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.1e-36 Score=214.06 Aligned_cols=172 Identities=44% Similarity=0.811 Sum_probs=154.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++.+...+..++.++|++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 35679999999999999999999999999888899998888878888999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++++++.+...|+..+....++.|+++|+||+|+.+.. ...+..+++..+++.++...++++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999997678999999888899999999999997532 1236788899999999984599999999
Q ss_pred CCCHHHHHHHHHHHHcCCCc
Q 036449 163 QQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~ 182 (197)
|.|++++|++|.+.+..++.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999887654
No 5
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=6.6e-37 Score=212.89 Aligned_cols=171 Identities=32% Similarity=0.443 Sum_probs=151.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+++||+||++.+...+..++..+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 78889999999999999999999999999998888899887777778889988999999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++.++. +++++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES 148 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence 9999999999999998 67887776654 5899999999999976544 778889999999998 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCCch
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
||+++.|++++|++|++.+......
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC---
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999877543
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.2e-37 Score=216.45 Aligned_cols=181 Identities=35% Similarity=0.587 Sum_probs=148.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|.+|||||||++++.++.+...+.++....+.....+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56799999999999999999999999998888888887777888889988999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. ...+++..++...+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 67777777644 589999999999997432 567788899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCch-----hhhhhccccccccC
Q 036449 162 TQQNVKAVFDAAIRVVLQPPKT-----KKKKNKAQKACSIL 197 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~~-----~~~~~~~~~~c~~~ 197 (197)
+|.|++++|++|.+.+...... +.++++++.+|.||
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999988765432 23455566778876
No 7
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.2e-37 Score=215.30 Aligned_cols=179 Identities=96% Similarity=1.459 Sum_probs=134.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|++.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++++...+..++.++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999988888888876665555566777889999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+...........+..+++..+++.++..+++++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999985589999988778899999999999976543111112223356788889999998668999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.|++++|++|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998765
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-36 Score=211.39 Aligned_cols=177 Identities=54% Similarity=0.999 Sum_probs=151.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999999888888887777777777888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++++++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 99999999999998558999998887899999999999997642110 0111123467788899999998768999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.|++++|++|.+.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 9
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=215.96 Aligned_cols=165 Identities=32% Similarity=0.557 Sum_probs=147.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45699999999999999999999999988888888887777777888888899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..++..++. +++++||+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 159 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence 9999999999998 78888887765 3899999999999976543 667888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|++++|++|++.+...
T Consensus 160 ~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999987653
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.5e-36 Score=215.45 Aligned_cols=180 Identities=35% Similarity=0.639 Sum_probs=150.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||+++|..+.+...+.+|.+..+.....+++..+.+.+||+||++.+..++..++.++|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 45699999999999999999999999999888999988887777788888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++.+++.+|+++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 9999999999995489999999888899999999999997631000 00011233778889999999998689999999
Q ss_pred CCCC-HHHHHHHHHHHHcCCCch
Q 036449 162 TQQN-VKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 162 ~~~~-i~~l~~~i~~~~~~~~~~ 183 (197)
+|.| ++++|+++++.+......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999998876544
No 11
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=7.5e-36 Score=208.19 Aligned_cols=180 Identities=63% Similarity=1.061 Sum_probs=153.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+++||+||++.+...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999998888888887777777888989999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 9999999999998558999998877889999999999997642100 00011233667788889998886689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCch
Q 036449 162 TQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
+|.|++++|++|.+.+.+.+..
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC-
T ss_pred CccCHHHHHHHHHHHHhccccc
Confidence 9999999999999999876543
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=211.88 Aligned_cols=178 Identities=52% Similarity=0.889 Sum_probs=143.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.+..++..++.++|++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 45679999999999999999999999988888888888777777888888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++++++.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..++..++..+++++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999998558999998887899999999999997632100 0001123366788889999988768999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (197)
+++.|++++|++|.+.+.+.
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988644
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.8e-36 Score=208.44 Aligned_cols=177 Identities=36% Similarity=0.708 Sum_probs=149.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.+.++|+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.|...+..++.++|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999999888888887777767777888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++++++.+...|+..+....++.|+++|+||+|+.+..... ......+.++.+++..+++.++..+|+++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999988678988888877899999999999997531100 0011223467788999999988558999999
Q ss_pred C-CCCCHHHHHHHHHHHHcC
Q 036449 161 K-TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~-~~~~i~~l~~~i~~~~~~ 179 (197)
+ ++.|++++|+.+.+.+..
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998764
No 14
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-36 Score=213.63 Aligned_cols=184 Identities=26% Similarity=0.485 Sum_probs=143.6
Q ss_pred CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449 1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|++ ++.++|+++|.+|||||||++++..+.+...+.++.+..+......++..+.+.+||+||++.+...+..++..+|
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 443 5679999999999999999999999988887888887777667777888889999999999999988888999999
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++..++. +++
T Consensus 82 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~ 148 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFM 148 (199)
T ss_dssp EEEEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEE
Confidence 99999999999999988 55666555432 478999999999996522 456778888888988 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCch----------hhhhhccccccccC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQPPKT----------KKKKNKAQKACSIL 197 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~~~~----------~~~~~~~~~~c~~~ 197 (197)
++||++|.|++++|++|.+.+..+... +...++++++|++|
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~ 199 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCSSSCEECC----------------------
T ss_pred EEecCCCCCHHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence 999999999999999999988766331 11223456678876
No 15
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=208.96 Aligned_cols=165 Identities=24% Similarity=0.423 Sum_probs=141.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+.+.+||+++|.+|||||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++.+..+ ..++.++|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 345779999999999999999999999999888899998777777778888899999999999988775 5688999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. ++.+++.++++..+. ++++
T Consensus 96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e 163 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE 163 (187)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence 999999999999998 68888877653 5899999999999976443 677888999999998 8999
Q ss_pred ecc-CCCCCHHHHHHHHHHHHcC
Q 036449 158 CSS-KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 158 ~sa-~~~~~i~~l~~~i~~~~~~ 179 (197)
+|| +++.|++++|+.|++.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999988753
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=204.66 Aligned_cols=168 Identities=33% Similarity=0.570 Sum_probs=146.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999998877777777544 3456677888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+. +..+++..++...+. +++++||++
T Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (181)
T 3tw8_B 87 VVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAKE 154 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999998 789999988888999999999999976543 667888899999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCch
Q 036449 163 QQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~~ 183 (197)
|.|++++|++|.+.+...+..
T Consensus 155 ~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 155 NVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999988765443
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.9e-35 Score=205.87 Aligned_cols=164 Identities=34% Similarity=0.543 Sum_probs=146.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999998888898887777788889989999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.+. +..++++.+++.++. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 163 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK 163 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence 9999999999998 6777777553 26899999999999976544 778889999999997 89999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 036449 162 -TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 -~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+.+
T Consensus 164 ~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 999999999999988753
No 18
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=210.98 Aligned_cols=178 Identities=45% Similarity=0.859 Sum_probs=131.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 45699999999999999999999999888888888877777777888888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+....... ......+.++.+++..+++..+..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 9999999999998558999998887889999999999997653210 00011223677888899999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
+|.|++++|++|.+.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887553
No 19
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.6e-35 Score=205.60 Aligned_cols=165 Identities=23% Similarity=0.342 Sum_probs=141.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+.+.+||+++|.+|||||||++++..+.+...+.++ ...+...+.+++..+.+++||++|++.+. ++.++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 4567899999999999999999999999998877777 44556778889999999999999998876 67789999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... ...+..+++..++..++..+|+++|
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence 999999999999998 67888887764 589999999999995321 1236788899999999844999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (197)
|++|.|++++|+++++.+.+.+
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999876543
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=5.7e-35 Score=200.94 Aligned_cols=165 Identities=30% Similarity=0.599 Sum_probs=137.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988877777775444 35566778889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999998 68888777654 5799999999999976543 567788899999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
+++.|++++|++|.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 21
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.2e-34 Score=204.92 Aligned_cols=176 Identities=51% Similarity=0.889 Sum_probs=150.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35689999999999999999999999988888888877776667788888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+...|...+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999998678999888877899999999999997642110 00111233667888899999887689999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998754
No 22
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=8.2e-36 Score=207.70 Aligned_cols=167 Identities=29% Similarity=0.602 Sum_probs=116.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999998888776667765444 456667888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999998 67888887765 6899999999999976443 667888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 036449 162 TQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~ 182 (197)
++.|++++|++|.+.+.....
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998876433
No 23
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.9e-35 Score=206.18 Aligned_cols=178 Identities=50% Similarity=0.867 Sum_probs=145.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45689999999999999999999999988888888877776667788888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 9999999999988678999888877899999999999997642110 00011123567788889998887689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
+|.|++++|++|.+.+....
T Consensus 183 ~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 24
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-35 Score=208.25 Aligned_cols=176 Identities=36% Similarity=0.713 Sum_probs=148.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..++.++|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888888877776667778888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++.++..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999988668989888877899999999999997531100 00111234677888999999885589999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 036449 162 -TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 -~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|+.+.+.+..
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999988753
No 25
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.9e-35 Score=204.95 Aligned_cols=165 Identities=22% Similarity=0.320 Sum_probs=138.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|++.+.+||+++|.+|||||||++++..+.+.. +.+|.+..+...+.+++..+.+++||+||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 778889999999999999999999999998876 67888777777788888889999999999976 346778999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHY---A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~---~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|+|||++++++++.+ ..|+..+... . ++.|+++|+||+|+.... .+.+..+++..++...+..+++
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999998 6765555433 2 589999999999995321 1236778888888887434899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++||++|.|++++|++|++.+...
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.2e-35 Score=203.49 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=146.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.+.++|+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35679999999999999999999999999888889888777777888888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPEL-KHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i-~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++.++..+ ..|+..+ .... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 99999999999998 5776666 4333 5899999999999976543 667788889888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++|.|++++|++|.+.+.+..
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999886543
No 27
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.5e-34 Score=205.03 Aligned_cols=168 Identities=31% Similarity=0.612 Sum_probs=145.4
Q ss_pred CC--CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCC
Q 036449 1 MS--ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG 77 (197)
Q Consensus 1 m~--~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 77 (197)
|+ .++.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 65 35679999999999999999999999998887777775444 4566778888899999999999999999999999
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 148 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL 148 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence 9999999999999999998 67888887765 6899999999999976543 567788889998887 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++||++|.|++++|++|.+.+.+.
T Consensus 149 ~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 149 ETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 28
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=4e-35 Score=207.81 Aligned_cols=174 Identities=64% Similarity=1.077 Sum_probs=148.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 56799999999999999999999999998888898888888788888888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..+++..+..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 9999999999998558999999888899999999999997653211 01111223567888899999998679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 036449 162 TQQNVKAVFDAAIRVV 177 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~ 177 (197)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.9e-35 Score=206.43 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=144.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|||||||++++..+.+...+.++.+. .....+.+++..+.+++||+||++.+...+..++.++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999999888777777754 34556778888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887765 5799999999999976443 667788889888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+...
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=207.66 Aligned_cols=169 Identities=30% Similarity=0.510 Sum_probs=138.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
....++|+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|..++..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35669999999999999999999999998877777775444 45567788888999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 157 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSA 157 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCC
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887765 5899999999999976443 567788889998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCch
Q 036449 161 KTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
+++.|++++|++|.+.+......
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998876443
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=7.2e-35 Score=199.82 Aligned_cols=163 Identities=29% Similarity=0.540 Sum_probs=142.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888877777777788889999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.+. +..+++..+++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999998 6677766654 25899999999999976543 5677888888888444899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 036449 163 QQNVKAVFDAAIRVVL 178 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (197)
|.|++++|++|.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=6e-35 Score=200.22 Aligned_cols=163 Identities=33% Similarity=0.568 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56899999999999999999999999888888888777777778888889999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 77877777655 3899999999999976543 667888899999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|++|.+.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-34 Score=199.26 Aligned_cols=165 Identities=30% Similarity=0.546 Sum_probs=142.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+.+.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999988877777765444 45566788889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 67887777664 7899999999999976443 567788889888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.|++++|++|.+.+.+
T Consensus 151 ~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987653
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.6e-35 Score=203.53 Aligned_cols=166 Identities=28% Similarity=0.496 Sum_probs=144.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|||||||++++..+.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999888777777754 34556677888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 99999999999998 68887777655 6899999999999975443 567788889998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.|++++|+++.+.+.+..
T Consensus 156 ~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999887543
No 35
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=208.01 Aligned_cols=166 Identities=30% Similarity=0.534 Sum_probs=138.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999998877777775443 566777888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+. +..++++++++..+..+++++||+
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999998 68888888766 6899999999999976443 667888899999887689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+...
T Consensus 176 ~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988643
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.7e-34 Score=200.59 Aligned_cols=166 Identities=34% Similarity=0.571 Sum_probs=143.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4569999999999999999999999988877767765443 455667888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..+. +++++||+
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence 99999999999988 78888887765 6899999999999976443 667888899998888 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCC
Q 036449 162 TQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.|++++|++|.+.+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999886654
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.4e-34 Score=198.60 Aligned_cols=165 Identities=35% Similarity=0.538 Sum_probs=143.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.++|+++|.+|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 356799999999999999999999999888777777753 4455667788888999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+. +..++++.+++..+. +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999988 678887776667899999999999976443 567788889999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988764
No 38
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=8.2e-35 Score=204.12 Aligned_cols=164 Identities=28% Similarity=0.577 Sum_probs=140.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..++.++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4669999999999999999999999988777777765444 456677888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..+. +++++||+
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 67888887765 6899999999999976443 567888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+.+
T Consensus 167 ~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 39
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.5e-34 Score=200.35 Aligned_cols=165 Identities=30% Similarity=0.588 Sum_probs=143.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34679999999999999999999999998877777775443 55666788889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++++++..+. +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887766 6899999999999976443 567788899999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
+++.|++++|++|.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 40
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.7e-34 Score=201.10 Aligned_cols=164 Identities=33% Similarity=0.641 Sum_probs=143.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4569999999999999999999999988777777775444 445667778889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++.++. +++++||+
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 167 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK 167 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 67888888765 6899999999999976443 567788899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+.+
T Consensus 168 ~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=202.75 Aligned_cols=168 Identities=30% Similarity=0.589 Sum_probs=146.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.+|+|||||++++..+.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 35699999999999999999999999988777777754 44566777888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++..++. +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999998 67888887766 5899999999999976554 677888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCch
Q 036449 162 TQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
++.|++++|++|.+.+......
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988765443
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-34 Score=197.78 Aligned_cols=167 Identities=34% Similarity=0.625 Sum_probs=135.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
.++.++|+++|.+|+|||||++++..+.+. ..+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998875 45566665444 3445678888899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
+|+|+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++|
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 154 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS 154 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999998 78888887766 5899999999999976543 567788889999998 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (197)
|+++.|++++|++|.+.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 43
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.2e-34 Score=198.70 Aligned_cols=162 Identities=24% Similarity=0.386 Sum_probs=119.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.+||+++|.+|+|||||++++.+..... ..++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 35899999999999999999998765543 34455555666777889999999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (166)
T 3q72_A 80 YSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAAL 147 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGG
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCC
Confidence 999999999998 67777776543 6899999999999976554 678888899999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
|.|++++|++|.+.+..
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=200.26 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=128.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--cccccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~ 81 (197)
.+.++|+++|.+|+|||||++++.+..+...+.+...+.+...+.+++..+.+.+||+||++. +..+...++..+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999887765544333344556677888888999999999987 556667788999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.++...+. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999998 67877777653 5899999999999976543 567778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (197)
|++|.|++++|++|.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 45
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-35 Score=204.52 Aligned_cols=166 Identities=31% Similarity=0.502 Sum_probs=143.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++. ...+..++..+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 456678999999999999999999999999988888888877777778888889999999999988 6777788899999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 67777776643 5899999999999976543 667888899999987 89999
Q ss_pred ccCCCC-CHHHHHHHHHHHHcC
Q 036449 159 SSKTQQ-NVKAVFDAAIRVVLQ 179 (197)
Q Consensus 159 sa~~~~-~i~~l~~~i~~~~~~ 179 (197)
||+++. |++++|++|.+.+.+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHh
Confidence 999999 999999999998754
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-34 Score=197.31 Aligned_cols=166 Identities=32% Similarity=0.552 Sum_probs=142.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.++|+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999988877777775444 4566678888899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+... ...+..+++..++...+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 67888777665 6899999999999976421 233677888889999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|++|.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887643
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.5e-34 Score=195.94 Aligned_cols=165 Identities=26% Similarity=0.539 Sum_probs=144.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998877777776444 45566788889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888888764 7899999999999976443 567788889888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
+++.|++++|++|.+.+.+
T Consensus 151 ~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 151 KNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=205.50 Aligned_cols=166 Identities=30% Similarity=0.535 Sum_probs=135.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.++|+++|.+|||||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999988877777776533 355666788888999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..+++..+. +++++||
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA 169 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA 169 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 68888777655 6899999999999976443 567788889998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 036449 161 KTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~ 180 (197)
++|.|++++|++|.+.+...
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.6e-34 Score=197.92 Aligned_cols=162 Identities=31% Similarity=0.583 Sum_probs=142.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|++|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777777788888888999999999999999888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++.+++.+ ..|...+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999988 66766665543 5899999999999976443 567788889999988 899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 036449 163 QQNVKAVFDAAIRVVL 178 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~ 178 (197)
|.|++++|++|.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
No 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.3e-35 Score=201.61 Aligned_cols=167 Identities=28% Similarity=0.421 Sum_probs=141.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
..+.++|+++|.+|+|||||++++..+.+...+.+|.+ +.....+.+++ ..+.+++||+||++.+...+..++.++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999887766666664 34455666665 67899999999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA---PGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|+|||++++.+++.+ ..|+..+.... ++.| +++|+||+|+.+.+. +..+++..+++..+. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999988 68888777643 2455 899999999976443 567788899999998 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++||++|.|++++|++|.+.+.+.+
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987764
No 51
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-34 Score=203.90 Aligned_cols=164 Identities=24% Similarity=0.429 Sum_probs=133.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccccCcCCCcE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (197)
.+.+||+++|.+|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...++..+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45699999999999999999999864 3344444444455566777888889999999999876 55566778899999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|+|||++++++|+.+ ..|...+.... ++.|+++|+||+|+.+.+. +..++++.++...++ +|+++
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~ 182 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET 182 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 67777666432 5899999999999976443 566778888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~ 179 (197)
||++|.|++++|++|++.+..
T Consensus 183 SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.6e-34 Score=197.55 Aligned_cols=163 Identities=25% Similarity=0.385 Sum_probs=128.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-ccccCcCCCcEEEE
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 83 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 83 (197)
.+||+++|.+|||||||++++.+..+...+.++. .+.....+.+++..+.+.+||+||++.+.. .+..++.++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998766654433333 455566677888889999999999998876 67777889999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++..+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999998 67777777665 3899999999999976544 678888999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|+++.+.+..+
T Consensus 150 ~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999987643
No 53
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.9e-34 Score=200.18 Aligned_cols=164 Identities=32% Similarity=0.562 Sum_probs=145.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++....+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 35699999999999999999999999988888888887777777888888899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..++++.+++.++. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 163 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 163 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence 9999999999998 67877777655 3899999999999976543 567788899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 164 TRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998854
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=9.6e-34 Score=196.08 Aligned_cols=165 Identities=36% Similarity=0.658 Sum_probs=138.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 5679999999999999999999999988877777775444 556677888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+ +. +..+++..+++..+..++++
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQ----------VSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CS----------SCHHHHHHHHHHTTCCCEEE
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999988 77877776543 5789999999999963 22 56778888888444448999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+||++|.|++++|+++.+.+.+.
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4e-34 Score=200.79 Aligned_cols=165 Identities=28% Similarity=0.539 Sum_probs=143.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999988777777776544 445566777889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++++++.++. +++++||+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 168 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK 168 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888888766 5899999999999975433 567888899999887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTBSHHHHHHHHHHTCC--
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 56
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=201.01 Aligned_cols=165 Identities=30% Similarity=0.531 Sum_probs=143.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34679999999999999999999999988877777765433 45566778889999999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..++++.++...+. +++++||
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 169 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA 169 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 67888877655 6899999999999976443 567788889988888 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
+++.|++++|++|.+.+.+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=4.3e-34 Score=196.48 Aligned_cols=163 Identities=32% Similarity=0.648 Sum_probs=136.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999988777777775444 4556667778899999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... . +..+++..+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-C----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-c----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999988 78888887766 68999999999999432 2 566788889999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 036449 163 QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~ 180 (197)
+.|++++|++|.+.+.++
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=202.79 Aligned_cols=172 Identities=32% Similarity=0.511 Sum_probs=135.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
...+.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 345679999999999999999999999988777777775444 4567778888999999999999999988889999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
+|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...... ...+.+..+++..++...+. +++++|
T Consensus 104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~S 177 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETS 177 (199)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEee
Confidence 9999999999999998 68888887765 58999999999999632100 01223667888899999998 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~ 179 (197)
|++|.|++++|++|++.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=197.98 Aligned_cols=164 Identities=27% Similarity=0.500 Sum_probs=141.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 56899999999999999999999998887777887767666677788888999999999999998888889999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999887 56666665532 5899999999999976543 566777888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+..+
T Consensus 150 ~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTBSHHHHHHHHHHTCCSS
T ss_pred CCcCHHHHHHHHHHHHhhh
Confidence 9999999999999876543
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.5e-34 Score=197.94 Aligned_cols=164 Identities=34% Similarity=0.557 Sum_probs=141.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999988877777775 444566778888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||+
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK 159 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 67877776554 5899999999999976543 567788888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+..
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987654
No 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.3e-33 Score=197.79 Aligned_cols=164 Identities=35% Similarity=0.565 Sum_probs=134.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 35699999999999999999999999888888888877777777888888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... ...++++++++.++. +++++||+
T Consensus 99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 165 (190)
T 3con_A 99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAK 165 (190)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999988 78887777654 479999999999996522 567788899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=199.62 Aligned_cols=165 Identities=32% Similarity=0.638 Sum_probs=144.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.+|||||||++++....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4679999999999999999999999998877777775444 455667888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence 99999999999988 67888887766 6899999999999976543 667888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICEK 172 (203)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.3e-34 Score=200.04 Aligned_cols=165 Identities=32% Similarity=0.566 Sum_probs=142.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCccccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS--ANVVVNGS---------TVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~G~~~~~~~~~ 72 (197)
.+.++|+++|.+|+|||||++++..+.+...+.++.+..+. .....++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999999888777777765443 34445544 78899999999999999999
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.++.++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.++...
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence 999999999999999999999998 68888887765 5899999999999976443 5677888999999
Q ss_pred CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 151 GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+. +++++||+++.|++++|++|.+.+.+.
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 98 899999999999999999999988653
No 64
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=202.09 Aligned_cols=166 Identities=25% Similarity=0.411 Sum_probs=136.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCcccccc-ccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~ 81 (197)
...++|+++|.+|||||||+++|.+......+.++ ..+.+...+.+++..+.+.+||++|++.+.. ++..++..+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46699999999999999999999754332222233 3445556677888889999999999988765 677788899999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 159 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..+. +++++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999998 67888877655 4899999999999976543 667888899999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCC
Q 036449 160 SKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~l~~~i~~~~~~~~ 181 (197)
|+++.|++++|++|++.+...+
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=201.75 Aligned_cols=165 Identities=32% Similarity=0.560 Sum_probs=135.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999999888777667764 344556677888899999999999999998889999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+. +..++++.+++..+..+++++||+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999999998 78888888766 5899999999999976543 567778888887533489999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=9.3e-34 Score=200.94 Aligned_cols=166 Identities=30% Similarity=0.551 Sum_probs=138.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999988877777774 344555667777889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++......++++
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999988 77777766543 478999999999997322 45677778877443348999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+||++|.|++++|++|.+.+....
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999876543
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=9.4e-34 Score=198.37 Aligned_cols=164 Identities=30% Similarity=0.531 Sum_probs=138.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc-cccccCcCCCcE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYN-RLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ 80 (197)
..+.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+. .++..++.++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999998887777777543 45566778888999999999999988 788889999999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..+. +++++
T Consensus 97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 164 (189)
T 1z06_A 97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET 164 (189)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 67888877664 6899999999999976543 567888899999988 89999
Q ss_pred ccCCC---CCHHHHHHHHHHHHc
Q 036449 159 SSKTQ---QNVKAVFDAAIRVVL 178 (197)
Q Consensus 159 sa~~~---~~i~~l~~~i~~~~~ 178 (197)
||+++ .|++++|++|.+.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999988764
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=7.6e-34 Score=197.28 Aligned_cols=166 Identities=31% Similarity=0.584 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+.++|+++|.+|+|||||++++....+...+.++.+.. ....+.++ +..+.+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 567999999999999999999999998887777777433 34445555 5567899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+..... .+..+++..+++..+..+++
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 86 VLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLF 155 (182)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeEE
Confidence 999999999999998 77877766543 5899999999999954321 25677788888854444899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++||++|.|++++|++|.+.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 156 LTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=6.7e-35 Score=206.85 Aligned_cols=169 Identities=27% Similarity=0.370 Sum_probs=110.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEeCCCccccccccccCcC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVF-DNFSANVVVNGS--TVNLGLWDTAGQEDYNRLRPLSYR 76 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~ 76 (197)
...+.++|+++|.+|+|||||++++..+ .+...+.+|.+ +.....+.+++. .+.+.+||+||++.+...+..++.
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456789999999999999999999998 77777778775 455666777776 789999999999999999999999
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCcccC-CcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILVGTKLDLRD-DKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+ .+. +..+++..+++.++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence 99999999999999999998 688888887654 899999999999976 443 66788899999999
Q ss_pred CCceEEeccCC-CCCHHHHHHHHHHHHcCCCc
Q 036449 152 APAYIECSSKT-QQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 152 ~~~~~~~sa~~-~~~i~~l~~~i~~~~~~~~~ 182 (197)
. +++++||++ +.|++++|++|.+.+.+...
T Consensus 165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp C-EEEECCC-------CHHHHHHHHHHHHHHH
T ss_pred C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 7 999999999 99999999999998875443
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-33 Score=198.46 Aligned_cols=165 Identities=29% Similarity=0.501 Sum_probs=139.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGST-------------------------- 53 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------- 53 (197)
|...+.++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7788899999999999999999999999988877777775443 3344444433
Q ss_pred -----------EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 54 -----------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~ 122 (197)
+.+.+||+||++.+...+..++..+|++|+|+|++++.+++.+ ..|+..+....+ .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence 7899999999999999999999999999999999999999988 688888876654 99999999999
Q ss_pred cCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
...+. +..++++.+++..+. +++++||+++.|++++|++|.+.+.+
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33222 567888899999988 99999999999999999999988753
No 71
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-35 Score=205.46 Aligned_cols=165 Identities=32% Similarity=0.621 Sum_probs=144.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4569999999999999999999999888777777765333 455666777788999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++.+++..+. +++++||+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 67998888866 6899999999999976543 677888899999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2.7e-33 Score=191.46 Aligned_cols=162 Identities=35% Similarity=0.579 Sum_probs=142.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 35899999999999999999999998888888888777777777888889999999999999998888899999999999
Q ss_pred EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. ...+++..+++..+. +++++||++
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999988 78888777654 389999999999997622 456778889999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 036449 163 QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~ 179 (197)
+.|++++|++|.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 73
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=195.93 Aligned_cols=165 Identities=30% Similarity=0.622 Sum_probs=144.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 569999999999999999999999998877777775444 4566778888999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.. +..+++..+++..+. +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999998 68888887754 579999999999994422 566778889998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCc
Q 036449 162 TQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~~~ 182 (197)
++.|++++|++|.+.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999887643
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.2e-34 Score=204.85 Aligned_cols=167 Identities=37% Similarity=0.614 Sum_probs=141.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCcccccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGS----------TVNLGLWDTAGQEDYNRLR 71 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~ 71 (197)
.++.++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++. .+.+++||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 35679999999999999999999999888776666665443 344555554 6889999999999999999
Q ss_pred ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
..++..+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+. +..+++..+++.
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~ 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence 9999999999999999999999988 68887776654 5899999999999976443 567888899999
Q ss_pred hCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 150 IGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++. +++++||+++.|++++|++|.+.+.+..
T Consensus 171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 171 YGI-PYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 998 8999999999999999999999887643
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=3.2e-33 Score=196.21 Aligned_cols=165 Identities=24% Similarity=0.438 Sum_probs=130.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh--CCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccccCcCCCcE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (197)
.+.+||+++|.+|||||||+++|.+ ..+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4579999999999999999999985 33444444444455566777888889999999999876 55566777888999
Q ss_pred EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449 81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++|+.+ ..|...+.... ++.|+++|+||+|+...+. +..++++.++...+. +|+++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999998 67777666543 5899999999999965433 566777788888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
||++|.|++++|+++++.+...
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988543
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=195.35 Aligned_cols=164 Identities=32% Similarity=0.651 Sum_probs=140.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4569999999999999999999999988777777775443 456677888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.. +. +..+++..++..++. +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-cc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 68888887766 4799999999999943 22 556778888888988 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+.+.
T Consensus 165 ~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=4.2e-32 Score=205.31 Aligned_cols=177 Identities=63% Similarity=1.071 Sum_probs=151.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|.+|+|||||++++..+.+...+.++++..+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999998888899888887778888988999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+..... ........+..+++..+++..+..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 9999999999998558999998887899999999999996542100 00011234677888999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
+|.|++++|+.|.+.+..+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999988754
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.4e-33 Score=198.43 Aligned_cols=165 Identities=24% Similarity=0.284 Sum_probs=130.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCceeeee-eEEE-EECCeEEEEEEEeCCCcccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-----------VPTVFDNF-SANV-VVNGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-----------~~~~~~~~-~~~~-~~~~~~~~~~i~D~~G~~~~~~ 69 (197)
.++.+||+++|.+|||||||++.+. +.+...+ .+|.+..+ .... .+++..+.+++||+||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3567999999999999999996554 4444442 23333222 2222 4566788999999999999999
Q ss_pred ccccCcCCCcEEEEEEeCC------CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449 70 LRPLSYRGADVFILAFSLI------SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG 143 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
.+..++.++|++|+|||++ +.++++.+ ..|+..+....++.|+++|+||+|+.+. +..+++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~ 156 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV 156 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence 9999999999999999999 45666666 5677776544578999999999999653 567788
Q ss_pred HHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 144 EELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
.++++..+..+++++||++|.|++++|++|.+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 88988888768999999999999999999999887543
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4e-33 Score=199.29 Aligned_cols=168 Identities=29% Similarity=0.437 Sum_probs=138.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEE-CCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
...+||+++|.+|||||||++++.++.+...+.++.+...... ... .+..+.+.+||+||++.+...+..++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999998888776666665444333 222 34448899999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence 999999999999998 68888887765 4699999999999976543 667778888888887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCch
Q 036449 161 KTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
++|.|++++|++|.+.+......
T Consensus 157 ~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHCCTTC
T ss_pred CCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999998876433
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=203.92 Aligned_cols=165 Identities=31% Similarity=0.607 Sum_probs=133.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+++|.+|||||||++++....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999998877666666643 33456677888889999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++..++. +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 78888887765 5899999999999976543 455667788888888 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+...
T Consensus 179 ~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp --HHHHHHHHHHTTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999998877654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=8.2e-33 Score=194.86 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=124.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+...++|+|+|.+|||||||+++|..+.+.. .+.+|.+.... .+. ...+.+.+||+||++.+...+..++.++|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 3567999999999999999999999999887 77777763322 233 3347888999999999999999999999999
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHHHhC
Q 036449 82 ILAFSLISKASYENVSKKWIPELKHYA---------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRKLIG 151 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 151 (197)
|+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+..... ...+....... +++..+
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence 999999999999998 55555544331 2799999999999976421 00011111111 113355
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
. +++++||+++.|++++|++|.+.+....
T Consensus 163 ~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 F-VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp E-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred e-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 5 8999999999999999999999887653
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.8e-33 Score=199.91 Aligned_cols=165 Identities=30% Similarity=0.488 Sum_probs=140.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+++|.+|||||||+++++.+.+...+.++.+ ........+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4669999999999999999999887776666666664 344555667888899999999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+... ..+...+++..+. +++++||++
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~ 158 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS 158 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999998 789999988888999999999999975432 1244567777887 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCCc
Q 036449 163 QQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~~~~~~ 182 (197)
|.|++++|++|.+.+...+.
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999877643
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=208.95 Aligned_cols=174 Identities=64% Similarity=1.075 Sum_probs=145.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+++||+||++++...+..++.++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57799999999999999999999999888888888877777677777778889999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc--CCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.+++.+...|+..+....++.|+++|+||+|+.+...... .......+..+++..+++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999985588888887777899999999999976431100 0001123556777888888886579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 036449 162 TQQNVKAVFDAAIRVV 177 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~ 177 (197)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.98 E-value=2.9e-31 Score=182.56 Aligned_cols=164 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999888754 4555542 233444554 678899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|||++++.++... ..|+..+... . ++.|+++|+||+|+.+... ...+.......++...+. +++++||+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT 151 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence 9999999999988 4555444332 2 6899999999999976421 000111111112223344 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+.++
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988654
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.98 E-value=5.3e-31 Score=184.58 Aligned_cols=156 Identities=17% Similarity=0.261 Sum_probs=121.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998875 345555443 34555666 778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+. ++.+++.+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 5666655432 268999999999999652 3344444443321
Q ss_pred CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 151 GAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 151 ~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
...+++++||++|.|++++|++|.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 12279999999999999999999764
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=1.7e-32 Score=191.89 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=124.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+...+.+|.+..+.. +... .+.+.+||+||++.+...+..++.++|++|+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 467999999999999999999999998887777777655432 3333 4778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-H----HHHhCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-L----RKLIGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 156 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+..... .++... + +...+. +++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 162 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGALD------------EKELIEKMNLSAIQDREI-CCY 162 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCCC------------HHHHHHHhChhhhccCCe-eEE
Confidence 9999999999998 5555555432 26899999999999965321 111111 1 111233 689
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++||++|.|++++|++|.+.+...
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877654
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=2.4e-31 Score=187.54 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=118.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+++|||||++.++..+..++.++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999988764 345555443 34555666 778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+. ++.+++.++....
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999998 5666665543 258999999999999652 3455666655422
Q ss_pred -----CCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 151 -----GAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 151 -----~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
...+++++||++|.|++++|++|.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 223799999999999999999998653
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=4.6e-32 Score=185.41 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||++++..+.+.. +.||.+. ....+... .+.+.+||+||++.+...+..++.++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887764 4555542 22233333 3778899999999999998889999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449 87 LISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 164 (197)
++++++++.+ ..|+..+... .++.|+++|+||+|+.+... ...+........+...+. +++++||++|.
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 147 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGD 147 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-------HHHHHHHhCcccccCccE-EEEEcccCCCc
Confidence 9999999988 5666555442 26899999999999965321 000111111111111233 68999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 036449 165 NVKAVFDAAIRVVLQ 179 (197)
Q Consensus 165 ~i~~l~~~i~~~~~~ 179 (197)
|++++|++|.+.+.+
T Consensus 148 gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRN 162 (164)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.98 E-value=9e-31 Score=182.63 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=124.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++.++. ...+.+|.+.. ...+.+++ +.+++||+||++.+...+..++.++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 577999999999999999999999887 56666666533 33444554 678899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+... .++..+... ..+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCCC------------HHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 5555555433 26899999999999966421 222222111 2333 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++||+++.|++++|++|.+.+.++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988654
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.98 E-value=4.1e-31 Score=185.04 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=123.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||++++.+.. +...+.+|.+ .....+.+++ +.+.+||+||++.+...+..++.++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999877 5555666665 3334445554 67889999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH--H---hCCC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK--L---IGAP 153 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~ 153 (197)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. ...++..++.. . .+.
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~- 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW- 161 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence 99999999999988 55655554432 48999999999999653 23344444442 1 233
Q ss_pred ceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+++++||+++.|++++|++|.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 79999999999999999999988754
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.2e-31 Score=184.08 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=122.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|.+|||||||++++..+.+. .+.+|.+. ....+.+++ +.+++||+||++++...+..++.++|++|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 356799999999999999999999988776 44555542 233444555 77889999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCce
Q 036449 83 LAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAY 155 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 155 (197)
+|+|++++++++.+ ..|+..+... .++.|+++|+||+|+.+.. ..++..+... ..+. ++
T Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~ 154 (187)
T 1zj6_A 89 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HI 154 (187)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-EE
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhhcCCCc-EE
Confidence 99999999999998 5666666544 2589999999999996532 2333333222 2344 79
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCCchh
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQPPKTK 184 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~~~~~ 184 (197)
+++||++|.|++++|++|.+.+.......
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999987765443
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=5.1e-32 Score=190.10 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=116.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|.+|||||||++++..+.+.. +.||.+ .....+...+ +.+.+||+||++.+...+..++.++|++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4577999999999999999999999887653 344443 2223344444 77889999999999999989999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... ...+.......++...+. +++++||
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA 172 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAMP-------VSELTDKLGLQHLRSRTW-YVQATCA 172 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBT
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCCC-------HHHHHHHhCcccccCCce-EEEECcC
Confidence 99999999999988 56666554432 5899999999999965321 000111111111112233 6899999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 036449 161 KTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~l~~~i~~~~~~ 179 (197)
++|.|++++|++|.+.+.+
T Consensus 173 ~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TTTBTHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.4e-31 Score=188.46 Aligned_cols=166 Identities=15% Similarity=0.212 Sum_probs=120.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee---eeEEEEE-CCeEEEEEEEeCCCcccccccc---ccCc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN---FSANVVV-NGSTVNLGLWDTAGQEDYNRLR---PLSY 75 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~~ 75 (197)
+++.+||+++|.+|||||||++++.+. +... ++.+.. ......+ ++..+.+++||+||++.|.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 356799999999999999999977664 3322 222111 1222223 2556789999999999987766 7899
Q ss_pred CCCcEEEEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----H
Q 036449 76 RGADVFILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----L 149 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 149 (197)
.++|++|+|||++++ +++..+ ..|+..+....++.|+++|+||+|+.+..... ...+.+..+++..+++ .
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhc
Confidence 999999999999998 666666 56676665566799999999999986521100 0011245566777887 5
Q ss_pred hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 150 IGAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.+. +|+++||++ .|++++|+.+++.+
T Consensus 170 ~~~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHL-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence 676 899999999 99999999999876
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.6e-31 Score=185.84 Aligned_cols=164 Identities=19% Similarity=0.200 Sum_probs=122.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|.+|+|||||++++..+.+.. +.+|.+ .....+..++ +.+.+|||||++.+...+..++.++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999998877654 344544 2233344554 678899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 84 AFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
|+|++++++++.+ ..|+..+... . ++.|+++|+||+|+.+... ...+........+...+. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 166 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAAS-------EAEIAEQLGVSSIMNRTW-TIVKSSSK 166 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCCSSCE-EEEECCTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-------HHHHHHHhChhhccCCce-EEEEccCC
Confidence 9999999999988 4555554433 2 5899999999999965421 000111111111122333 69999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 036449 162 TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|++++|++|.+.+.+.
T Consensus 167 ~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 167 TGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHhc
Confidence 9999999999999987543
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=7.7e-32 Score=187.48 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=119.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++.+..+. .+.+|.+. ....+.+++ +.+++||+||++.+...+..++.++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999987542 23444442 223444554 678899999999999998999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+... .++..+.. ...+. +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCC------------HHHHHHHhCchhccCCce-EEE
Confidence 9999999999988 5666555432 25899999999999975431 12221111 11233 699
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++||++|.|++++|++|.+.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.3e-31 Score=182.78 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=119.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999887 3444555432 23444555 778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (197)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.... ..++..+.. ...+. +++
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ 160 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC------------CHHHHHHHhCcccccCCce-EEE
Confidence 9999999999998 5555555443 2689999999999996532 122222222 12233 789
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 036449 157 ECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~ 176 (197)
++||++|.|++++|++|.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999764
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.2e-31 Score=186.96 Aligned_cols=165 Identities=25% Similarity=0.357 Sum_probs=121.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeee-EEEEE---CCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFS-ANVVV---NGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
.+||+++|++|||||||++++.+. .+...+.+|.+..+. ....+ ++..+.+.+||++|++.|..++..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 455556666643332 22222 234678999999999999999888999999
Q ss_pred EEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc---HHHHHHHHHHhCCC--
Q 036449 80 VFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS---TAQGEELRKLIGAP-- 153 (197)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 153 (197)
++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+... +. .+.+..+++..+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999998 578887 788888877767899999999999965432 21 23455666667763
Q ss_pred -ceEEeccCCCC-CHHHHHHHHHHHHcCCC
Q 036449 154 -AYIECSSKTQQ-NVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 154 -~~~~~sa~~~~-~i~~l~~~i~~~~~~~~ 181 (197)
+++++||+++. +++++++.|.+.+...+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 29999999996 99999999999887654
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.2e-29 Score=177.52 Aligned_cols=164 Identities=32% Similarity=0.568 Sum_probs=138.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 356999999999999999999999998877777776433 3556778888899999999999999988888899999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 161 (197)
+|+|+++..+++.+ ..|+..+.... .+.|+++++||+|+.+... ...++++.++...+. .++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999887 67777776554 5789999999999976443 556778889998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 036449 162 TQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~~~~ 179 (197)
++.|++++|++|.+.+..
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-30 Score=178.86 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|++|||||||++++..+.+ ..+.+|.+. ....+.+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 6789999999999999999999998776 334455442 233444555 778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-----hCCCceE
Q 036449 84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-----IGAPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (197)
|+|++++++++.+ ..|+..+... .++.|+++|+||+|+.+.. ..++..+.... .+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 157 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SIV 157 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEE
Confidence 9999999999988 5666666554 2689999999999996532 22222222211 122 689
Q ss_pred EeccCCCCCHHHHHHHHHHHHc
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++||+++.|++++|++|.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1e-28 Score=173.10 Aligned_cols=161 Identities=34% Similarity=0.595 Sum_probs=138.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|++++...+..++..++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 458999999999999999999999988877777775444 5667788888889999999999999988888999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 162 (197)
|+|+++..+++.+ ..|+..+.... ++.|+++++||+|+.+... ...++++.++...+. .++++||++
T Consensus 108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald 175 (191)
T 1oix_A 108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD 175 (191)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999887 67777766544 5789999999999976443 456788899998887 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 036449 163 QQNVKAVFDAAIRVV 177 (197)
Q Consensus 163 ~~~i~~l~~~i~~~~ 177 (197)
+.+++++|+.|.+.+
T Consensus 176 ~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 176 STNVEAAFQTILTEI 190 (191)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=4.1e-30 Score=183.20 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=116.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCcccccc-ccccCcCCCcE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ 80 (197)
..+.++|+++|.+|+|||||++++..+.+...+.++...... +.+++. .+.+++|||||++.+.. ++..++..+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356799999999999999999999999888777655533332 445533 57889999999999887 78888999999
Q ss_pred EEEEEeCCCch-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCcccccC------------------------C
Q 036449 81 FILAFSLISKA-SYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQFFID------------------------H 132 (197)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~~~~------------------------~ 132 (197)
+|+|||+++.+ ++......|...+... .++.|+++|+||+|+......... .
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4666645666665542 257999999999999764320000 0
Q ss_pred CCCCcccHHHHHHHHHHhC--CCceEEeccCCC------CCHHHHHHHHHHHH
Q 036449 133 PGAVPISTAQGEELRKLIG--APAYIECSSKTQ------QNVKAVFDAAIRVV 177 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~------~~i~~l~~~i~~~~ 177 (197)
...+.+..++++.|+.... ..+|++|||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000000011111111110 237999999999 99999999998753
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=7.9e-29 Score=171.45 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=117.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|+|||||++++..+.+...+.++.. ......+.+++. .+.+||+||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 5679999999999999999999999888766555543 233345556664 5679999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC--------Cc
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA--------PA 154 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 154 (197)
+|+|++++...+.. .++..+.. ++.|+++|+||+|+.... .++........+. .+
T Consensus 84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDTI 146 (178)
T ss_dssp EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSEE
T ss_pred EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCccc
Confidence 99999985443333 22333333 379999999999996532 1222222222211 27
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++++||++|.|++++|++|.+.+...
T Consensus 147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 147 FCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999887654
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=185.03 Aligned_cols=162 Identities=18% Similarity=0.283 Sum_probs=122.9
Q ss_pred CCceeEEEEEcCC---------CCCHHHHHHHHhh---CCCCCCCCCce-eeee-eEE--------------EEECCeEE
Q 036449 3 ASRFIKCVTVGDG---------AVGKTCLLISYTS---NTFPTDYVPTV-FDNF-SAN--------------VVVNGSTV 54 (197)
Q Consensus 3 ~~~~~~i~v~G~~---------~~GKstli~~~~~---~~~~~~~~~~~-~~~~-~~~--------------~~~~~~~~ 54 (197)
..+.+||+++|.+ |||||||+++|.. ..+...+.+++ +..+ ... ..+++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3566999999999 9999999999998 56666666665 2211 111 11456778
Q ss_pred EEEEEe-----------------------CCCccccccccccCcC---------------------CCcEEEEEEeCCCc
Q 036449 55 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK 90 (197)
Q Consensus 55 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 90 (197)
.+++|| ++|+++|..++..++. ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 7788888888888887 79999999999998
Q ss_pred --hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEEeccCCCCC
Q 036449 91 --ASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIECSSKTQQN 165 (197)
Q Consensus 91 --~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~ 165 (197)
.+++.+ ..|+..+... .++.|+++|+||+|+...+. + +++..++... +. +++++||+++.|
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~g 241 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVN 241 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBS
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCC
Confidence 999998 6888777654 26899999999999965432 2 5667777764 55 899999999999
Q ss_pred HHHHHHHHHHHHc
Q 036449 166 VKAVFDAAIRVVL 178 (197)
Q Consensus 166 i~~l~~~i~~~~~ 178 (197)
++++|++|++.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=5.6e-29 Score=179.04 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=117.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc------c----cccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE------D----YNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~----~~~~~~ 72 (197)
.+.++|+++|.+|||||||++++.+..+.. ....++...........+ ..+.+|||||+. . +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 467999999999999999999999887642 222222222223333344 678899999983 2 111 12
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH---HHHHHHHH
Q 036449 73 LSYRGADVFILAFSLISKASYENV-SKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST---AQGEELRK 148 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 148 (197)
.++..+|++|+|||++++.++... ...|+..+....++.|+++|+||+|+.+.+. +.. +.+..++.
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILD 173 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHH
Confidence 346788999999999998876522 1356666666556899999999999976443 332 34566766
Q ss_pred HhC--CCceEEeccCCCCCHHHHHHHHHHHHcCCCchh
Q 036449 149 LIG--APAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184 (197)
Q Consensus 149 ~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~ 184 (197)
..+ . +++++||++|.|++++|++|.+.+.+.+...
T Consensus 174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 665 5 8999999999999999999999987655433
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.9e-30 Score=191.90 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=119.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---ccccCcCCCcEE
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~ 81 (197)
||+++|.+|||||||++++.++.+.. .+.+|.+..+.. ++ ..+.+++|||+||++|.. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887654432 245566544432 22 347899999999999974 357889999999
Q ss_pred EEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH----hCCCce
Q 036449 82 ILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL----IGAPAY 155 (197)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (197)
|+|||++++ ++.... ..|+..+....+++|++++|||+|+....... ...+.+..++++++++. .++ +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 223333 33455555556899999999999997642100 00012556677777775 566 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++|||++ .+|.++|..+++.+..+.
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 9999998 589999999999887653
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=188.60 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=115.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+ +|.+..+ ..+...+ +.+++|||||++.|..++..++..+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988765432 3333222 2233333 778899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHH----HHhCCCceEE
Q 036449 84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELR----KLIGAPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~ 157 (197)
|||++++.+++.+...|...+.... ++.|+++|+||+|+.+... .++.. .+. ...+. ++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~ 305 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRNW-YIQA 305 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSCE-EEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCCC-EEEE
Confidence 9999999999998555555555443 6899999999999975421 11111 111 11122 5899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 036449 158 CSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+||++|.|++++|++|.+.+.+.
T Consensus 306 vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EECCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999988654
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=5.8e-29 Score=186.14 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=128.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccCcC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~ 76 (197)
..+||+++|.+|||||||++++.++.. .. .+.+|.+..+. ...+++ .+.+.+||+||++.+ ...+..++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998733 22 33444443333 333433 478999999999988 678888899
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHH---HHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-
Q 036449 77 GADVFILAFSLISKASYENVSKKWI---PELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA- 152 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (197)
++|++|+|||++++++++.+ ..|. ..+....++.|+++|+||+|+.+.... .....+..+++.++++.+|.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999988 5554 444445678999999999999762110 00001345778899999883
Q ss_pred -CceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 153 -PAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 153 -~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
.+++++||++ .++.++|..+++.+....
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 4899999999 899999999998876653
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.4e-28 Score=168.49 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccCcC-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 76 (197)
+.++|+++|++|+|||||++++.+..+.....++. .......+.+++ ..+++|||||++.+.. +...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 35899999999999999999999876544333332 233344455555 5688999999987753 2244443
Q ss_pred -CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 77 -GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++++++|+|+++.+.. ..|+..+... +.|+++|+||+|+...+. +. .++..+++.++. ++
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~ 141 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-KV 141 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hh-hHHHHHHHHhCC-CE
Confidence 79999999999886432 3455555553 799999999999965332 22 235678888887 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
+++||++|.|++++|+++.+.+.
T Consensus 142 ~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 142 VPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp EECBGGGTBSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999998763
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3.2e-28 Score=170.86 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=108.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAG----------QEDYNRL 70 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 70 (197)
+..+.++|+++|.+|+|||||++++.+..+...+.++.+.... .....++ .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 4557799999999999999999999988765544444433332 2223333 477999999 6666666
Q ss_pred cccCcCCC---cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH--HHHHH
Q 036449 71 RPLSYRGA---DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST--AQGEE 145 (197)
Q Consensus 71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~ 145 (197)
+..++..+ |++++|+|++++.++... .+...+.. .+.|+++|+||+|+.+... +.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~ 161 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence 66666655 999999999998877764 33444444 3789999999999976442 211 22222
Q ss_pred -HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 146 -LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 146 -~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++...+. +++++||+++.|++++|++|.+.+.
T Consensus 162 ~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPED-ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2222234 8999999999999999999998764
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=8.2e-28 Score=163.66 Aligned_cols=150 Identities=22% Similarity=0.184 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCcCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 77 (197)
.||+++|.+|+|||||++++.+..+. ..+.+++..........++. .+.+||+||++.+ ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988743 33333334444555556664 6779999998863 3444567889
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.+.. +++.+++ ..+..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--------------~~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE--------------LYLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG--------------GGCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch--------------HhHHHHH-hCCCCCeEE
Confidence 999999999998755433 2334444443 78999999999996532 2223344 566657999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 036449 158 CSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 158 ~sa~~~~~i~~l~~~i~~~~ 177 (197)
+||+++.|++++|++|.+.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998865
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.2e-27 Score=187.54 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=120.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+... .+|.+..+. .+... .+.+.+|||||++.+...+..++.++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE-TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE-EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeEE-EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4569999999999999999999999886543 445543322 23333 3678899999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-------Cc
Q 036449 84 AFSLISKASYENVSKKWIPEL-KHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-------PA 154 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~i-~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 154 (197)
|||++++++++.+ ..|+..+ .... ++.|+++|+||+|+..... .+ ++....+. .+
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~---~~~~~~~~~~~~~~~~~ 459 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMK------------PH---EIQEKLGLTRIRDRNWY 459 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC------------HH---HHHHHTTCTTCCSSCEE
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC------------HH---HHHHHhchhhhhcCCeE
Confidence 9999999999998 4454444 4332 5899999999999965321 12 22222222 15
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCCCch
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQPPKT 183 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~~~ 183 (197)
++++||++|.|++++|++|.+.+....+.
T Consensus 460 ~~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 460 VQPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999988665443
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=2.6e-28 Score=195.22 Aligned_cols=166 Identities=23% Similarity=0.294 Sum_probs=123.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEE---------EECCeEEEEEEEeCCCccccccccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV---------VVNGSTVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~G~~~~~~~~~ 72 (197)
...+.+||+++|.+|||||||++++.+..+...+.+|.+..+.... ..++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4567799999999999999999999999888777777765544321 1123357889999999999999999
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.++.++|++|+|+|+++.+ .. ..|+..+....++.|+++|+||+|+.+... +..++++.++...+.
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN 182 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred HHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence 9999999999999998763 44 678888888877899999999999976543 566777888888887
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
+++++||++|.|++++|+.|.+.+.....
T Consensus 183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999887643
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=3.3e-28 Score=167.77 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 74 (197)
+.++|+++|.+|+|||||++++.+..+ ...+.+++.+.....+.+++. .+.+|||||++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998754 334455555555666777774 47799999986542111 134
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+..+|++++|+|++++.+++. ..|+..+.... .+.|+++|+||+|+.+... . ++...+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~------~~~~~~~- 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------G------MSEVNGH- 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------E------EEEETTE-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------h------hhhccCC-
Confidence 788999999999999988764 36666666554 4799999999999964321 0 0111344
Q ss_pred ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+++++||+++.|++++|++|.+.+...
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 799999999999999999999876543
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2.6e-27 Score=166.03 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLR 71 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 71 (197)
+.+..++|+++|.+|+|||||++++.+..+. ...++.+..........+ ..+.+||+|| ++.+...+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3456689999999999999999999988743 233333323322222222 2366999999 55566666
Q ss_pred ccCcCCC---cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 72 PLSYRGA---DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 72 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..++..+ +++++|+|.+++.+.... .+...+... +.|+++|+||+|+.+... .....+++..++.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHh
Confidence 6555554 999999999887554433 333444444 789999999999975332 1134455667777
Q ss_pred HhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..+..+++++||+++.|++++|++|.+.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 6565589999999999999999999998754
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=8.3e-27 Score=174.48 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=126.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----------c
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----------R 69 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~ 69 (197)
++++.-.|+++|.+|||||||++++++..+.. ....++..........+ ....+.+|||||+..+. .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 45677899999999999999999999987642 33334433333344444 13678899999986544 4
Q ss_pred ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
....++..+|++++|+|++++.+..+. ..|+..+... +.|+++|+||+|+..... ...+....+.+.
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~ 151 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK 151 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence 455677889999999999999888876 5667777775 799999999999973322 345666777777
Q ss_pred hC-CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 150 IG-APAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 150 ~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++ ..+++++||++|.|++++|+.|.+.+...
T Consensus 152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 152 HPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 74 44899999999999999999999988654
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.8e-27 Score=166.08 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFDNFSANVVVNGSTVNLGLWDTAGQEDYN------RLRPLS 74 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~ 74 (197)
++.+.++|+++|++|||||||++++.+..+.....++ +.......+..++ ..+.+|||||++.+. .++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 3456799999999999999999999986543322233 2333344455555 678899999998774 234444
Q ss_pred cC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 75 YR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 75 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+. .++++++|+|.++. +.. ..|+..+... +.|+++|+||+|+..... +. .++..+++..+.
T Consensus 81 ~~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~ 143 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV 143 (188)
T ss_dssp HHHHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS
T ss_pred HhccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC
Confidence 43 58999999998763 444 4566666553 789999999999965432 22 345778888887
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+++++||+++.|++++|+++.+.+....
T Consensus 144 -~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 144 -KVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp -CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred -CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999987765
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=3.9e-28 Score=169.64 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------ccccccccccCc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~ 75 (197)
++|+++|.+|||||||++++.+..+...+.++... ........ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 69999999999999999999998877665554421 12222333 477999999 566666666677
Q ss_pred CC-CcEEEEEEeCCCchhHHHHHHHHHHH---------Hhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 76 RG-ADVFILAFSLISKASYENVSKKWIPE---------LKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.. ++++++++++.+..++..+...|... +... .++.|+++|+||+|+.... .+++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 66 77777777777778877764555432 1111 1479999999999996532 45677
Q ss_pred HHHHHhCCC------ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 145 ELRKLIGAP------AYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 145 ~~~~~~~~~------~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
.+++.++.. +++++||++|.|++++|++|.+.+.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 888888873 36999999999999999999998865543
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=8.1e-27 Score=170.36 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=117.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc------ccCc-
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR------PLSY- 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~- 75 (197)
.+.++|+++|.+|+|||||++++.+..+. ..+++++.......+...+ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 46799999999999999999999987653 3333333333334444444 678899999998776533 3444
Q ss_pred -CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 76 -RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+...+. +. .+...+++.+++ +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence 5899999999999876543 344555444 799999999999965433 22 236778888998 8
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHc
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++++||++|.|++++|+++.+.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=9.2e-26 Score=168.06 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=113.7
Q ss_pred CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------ccc
Q 036449 1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNR 69 (197)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~ 69 (197)
|++ .+..+|+++|.+|+|||||++++++..+.. ..+.|+..........++ .++.+|||||+.. +..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~ 78 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ 78 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence 544 356789999999999999999999887642 223344333333333344 6788999999875 334
Q ss_pred ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
....++..+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+..... + .....+.
T Consensus 79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-------------~-~~~~~~~ 142 (301)
T 1wf3_A 79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-------------E-AMKAYHE 142 (301)
T ss_dssp HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-------------H-HHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-------------H-HHHHHHH
Confidence 45567889999999999998765543 344566665556799999999999965321 0 1222222
Q ss_pred -hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 -IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 -~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+..+++++||++|.|++++++.|.+.+..
T Consensus 143 ~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 143 LLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred hcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 343478999999999999999999987643
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.1e-26 Score=170.69 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=112.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccCcC-
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN------RLRPLSYR- 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 76 (197)
..++|+++|.+|||||||++++.+.. ...++++++.... ...+.. ...+.+||+||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999865 3444443332222 222333 4568899999998775 23344443
Q ss_pred -CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 77 -GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.+|++++|+|+++.++.. .|...+... +.|+++|+||+|+..... +. .+...+++.+++ ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence 699999999999865442 444555443 799999999999965432 22 345678888888 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+++||++|.|++++|+++.+.+..
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCTT
T ss_pred EEEEccCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999987643
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=4.7e-26 Score=163.07 Aligned_cols=166 Identities=11% Similarity=0.015 Sum_probs=108.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCc----------cccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQ----------EDYN 68 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~ 68 (197)
....++|+++|.+|+|||||++++.+... .....+++... ....+. .....+.+|||||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 45678999999999999999999998762 22222222211 122222 22356789999994 2333
Q ss_pred cccccCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449 69 RLRPLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE 145 (197)
Q Consensus 69 ~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
.....++. .+|++++|+|.+++.+... ..++..+... +.|+++|+||+|+...... ....+...+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~ 171 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK 171 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence 33334443 3788999999998655433 3566667664 7899999999999764320 001122222
Q ss_pred HHHHh------CCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 146 LRKLI------GAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 146 ~~~~~------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
....+ ...+++++||++|.|++++|++|.+.+.....
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 22332 33379999999999999999999998876543
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1e-25 Score=164.25 Aligned_cols=150 Identities=15% Similarity=0.235 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----------ccccCc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 75 (197)
.+|+++|.+|||||||++++.+.... ..+++++.+.....+.+++. .+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999987543 33344444455556666664 678999999987764 334455
Q ss_pred --CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 76 --RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.++|++|+|+|+++.++...+ ...+... +.|+++|+||+|+.+... . ......+++..+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~-~~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------I-SIDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------C-EECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------c-HHHHHHHHHHcCC-
Confidence 789999999999986554433 3444444 799999999999975432 1 1224567788887
Q ss_pred ceEEeccCCCCCHHHHHHHHHHH
Q 036449 154 AYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
+++++||++|.|++++|++|.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 89999999999999999999887
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=6.6e-25 Score=172.23 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=99.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 74 (197)
..++|+++|.+|+|||||++++.+.. +...+.+++.+.....+.+++ +.+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 34889999999999999999999874 345556666666666777777 568899999987765433 346
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++++|+|++++.+++.. ..+...+... ++.|+++|+||+|+.+... . ....+.+... .+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence 8899999999999999887543 2333333222 3789999999999976542 1 1133444322 48
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHc
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++++||++|.|++++|++|.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999887
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=9e-26 Score=166.30 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=114.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------cc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----------PL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~ 73 (197)
+.++|+++|.+|+|||||++++.+..+. ..+++++.+.....+...+ ..+.+|||||+..+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999987653 2233333444444555555 356799999998776321 11
Q ss_pred C--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 74 S--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+ ...+|++++|+|+++.++... |...+... +.|+++|+||+|+.+... . ......+++.++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence 2 268999999999998655433 34444444 799999999999965432 1 123467788888
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+ +++++||++|.|++++|++|.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 7 899999999999999999998877654
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=4.4e-25 Score=162.53 Aligned_cols=158 Identities=18% Similarity=0.098 Sum_probs=115.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccCc--
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 75 (197)
+.++|+++|++|+|||||++++.+..+.... +.++.+.....+.+.+ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999999987653322 2233334444555666 3478999999987765 344444
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.++|++++|+|+++.+.. ..|...+... ...|+++|+||+|+.+... ... ....+++.++. ++
T Consensus 80 ~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 689999999999986432 2333333333 1389999999999865432 111 25678888888 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 156 IECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 156 ~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
+++||++|.|++++|+.+.+.+....
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999876543
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.1e-25 Score=174.34 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=113.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ----------EDYNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 71 (197)
...++|+++|.+|||||||++++.+... ...+.+++.+.....+..++. .+++|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998765 345556666666666777774 4779999998 3333333
Q ss_pred c-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHHHH
Q 036449 72 P-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELRKL 149 (197)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (197)
. .++..+|++++|+|++++.++++. .|...+... +.|+++|+||+|+.+.+. ...++. ..+.+.
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 316 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 316 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHh
Confidence 2 367789999999999999888876 566666554 799999999999976432 222222 222222
Q ss_pred h---CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 I---GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 ~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+ +..+++++||++|.|++++|+.+.+.+..
T Consensus 317 l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 317 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2 23389999999999999999999987754
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=4.6e-26 Score=162.63 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=101.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCC---
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--- 77 (197)
.+.++|+++|++|+|||||++++....+.. .+.++....+ ..+.+.+||+||++.+...+..++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467999999999999999999999887654 2334433222 23567899999999998888777776
Q ss_pred -CcEEEEEEeCC-CchhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 78 -ADVFILAFSLI-SKASYENVSKKWIPELKHY-----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
+|++|+|+|++ ++.++... ..|+..+... .++.|+++|+||+|+....... .......+++..++...
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERR 156 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHH
Confidence 89999999999 88888887 4554444332 2589999999999997654200 00001145566777777
Q ss_pred CCCceEEeccCCCCC
Q 036449 151 GAPAYIECSSKTQQN 165 (197)
Q Consensus 151 ~~~~~~~~sa~~~~~ 165 (197)
+. +++++||+++.+
T Consensus 157 ~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KK-SLNEVERKINEE 170 (218)
T ss_dssp HH-HHHC--------
T ss_pred hc-cccccccccccc
Confidence 76 899999998764
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=5.9e-25 Score=172.67 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=117.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 71 (197)
...++|+++|.+|+|||||++++.+.. ....+.+++.+.....+..++. .+++||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 456899999999999999999999764 3445556666666666777774 677999999 56666555
Q ss_pred cc-CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449 72 PL-SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI 150 (197)
Q Consensus 72 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.. ++..+|++++|+|++++.+..+ ..|...+... +.|+++|+||+|+.+.+. ...++..+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 43 6788999999999998765443 3566666654 799999999999976443 4445555555544
Q ss_pred ----CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 151 ----GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 151 ----~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+..+++++||++|.|++++|+.+.+.+..
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 23489999999999999999999987644
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=4.8e-24 Score=166.77 Aligned_cols=153 Identities=21% Similarity=0.204 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccccCc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 75 (197)
.+|+++|.+|||||||++++.+... ...+++++.+.......+++. .+++|||||++.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 4799999999999999999998763 355556666666667777774 4679999997642 33455678
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHHHHhCCCc
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELRKLIGAPA 154 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (197)
.++|++++|+|++++.+..+. .+...++.. +.|+++|+||+|+... . ..+. .++. ..+..+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 999999999999987665432 333444444 7899999999998531 0 1122 3443 456557
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++++||++|.|+.++++++.+.+..
T Consensus 142 ~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 142 PIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHHhccc
Confidence 8999999999999999999998863
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.9e-23 Score=158.40 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=116.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---------LRPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 73 (197)
...++|+++|.+|||||||++++.+..... .+..++...........+ ..+.+|||||...+.. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999999876422 222222222222333343 5688999999754321 1112
Q ss_pred CcCCCcEEEEEEeCCCch--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449 74 SYRGADVFILAFSLISKA--SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG 151 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+...+|++++|+|++++. +++.. ..|+..+....++.|+++|+||+|+..... .+++..++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 345689999999999877 66665 677777777555899999999999965432 244556666677
Q ss_pred CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 152 APAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
. +++++||++|.|++++|++|.+.+...
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999988543
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=3e-25 Score=171.58 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=115.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~ 74 (197)
...++|+++|..|+|||||++++....+. ....+++.+.....+.+.+. ..+.+|||||++.+..+.. .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 45689999999999999999999987753 33444444445555556553 2678999999988766533 36
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++|+|+|++..+. ...|+..+... +.|+++|+||+|+..... .+.+..+++.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence 788999999999933322 25677777766 799999999999976543 2556677777787 8
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
++++||++|.|++++|++|.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999998554
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=4e-23 Score=159.90 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=114.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee--------EEEE---------E---CCeEEEEEEEeC
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS--------ANVV---------V---NGSTVNLGLWDT 61 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~--------~~~~---------~---~~~~~~~~i~D~ 61 (197)
...+.++|+++|++++|||||+++|.+........ ....... ..+. . ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 45678999999999999999999998754322100 0000000 0000 0 112367889999
Q ss_pred CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH
Q 036449 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA 141 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (197)
||++.|.......+..+|++|+|+|++++.+.... ..++..+.... ..|+++|+||+|+.+.... ....+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~~~~ 152 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LSQYR 152 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HHHHH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HHHHH
Confidence 99999999888899999999999999998755555 45555555442 3589999999999754310 01112
Q ss_pred HHHHHHHHhC--CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 142 QGEELRKLIG--APAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+..++....+ ..+++++||++|.|++++++.|.+.+...
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 2233332221 23799999999999999999999877654
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=4.7e-24 Score=167.52 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccc--------cccC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~ 74 (197)
.++|+++|.+|+|||||++++.+.. ....+.+|+.+.....+.+++ ..+.+|||||+. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3899999999999999999999864 456667777777777777777 457899999987 55422 2245
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++|+|+|++++.++++. .++..+ ++.|+++|+||+|+.+. ...++...+.. .+. +
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence 7789999999999999887654 333433 37899999999999642 22333334332 233 7
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHc
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
++++||++|.|+++++++|.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999765
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=1.7e-23 Score=158.47 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=95.7
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~ 120 (197)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+... .+++|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 3778999999999999999999999999999999999 5668887 4555555442 2689999999999
Q ss_pred cccCCccc---c--cCCCCCCcccHHHHHHHHHH-----------hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 121 DLRDDKQF---F--IDHPGAVPISTAQGEELRKL-----------IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 121 D~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
|+.+.... . ..+.....++.+++..++.. .+. .+++|||+++.||+++|+++.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence 99643210 0 00011112567788888762 334 78999999999999999999998764
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=5.6e-23 Score=153.24 Aligned_cols=159 Identities=17% Similarity=0.105 Sum_probs=111.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~ 72 (197)
.+..+|+++|++|+|||||++++.+..+. .....++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 35568999999999999999999987653 2223333322222333344 568899999987 3445566
Q ss_pred cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.++..+|++++|+|.++ -+ .....+...+.. .+.|+++++||+|+..... ...+....+++.++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF 148 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence 78899999999999977 22 221233333433 3789999999999965221 223445566666665
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..++++||+++.|++++++.+.+.+..
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 579999999999999999999987654
No 136
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=3.6e-25 Score=175.24 Aligned_cols=163 Identities=20% Similarity=0.182 Sum_probs=113.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|++++|||||+++|....+...+.++....+ ...+..+ ....++||||||++.|..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 4678999999999999999999987655443333332222 1222221 1235789999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH---HHHhC-CCceEEe
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL---RKLIG-APAYIEC 158 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 158 (197)
+|+|++++...+.. .++..+... +.|+++++||+|+...+. .... .+...+ ...++ ..+++++
T Consensus 81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~--------~~v~-~~l~~~~~~~e~~~~~~~iv~v 147 (537)
T 3izy_P 81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADP--------EKVK-KELLAYDVVCEDYGGDVQAVHV 147 (537)
T ss_dssp EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSC--------CSSS-SHHHHTTSCCCCSSSSEEECCC
T ss_pred EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccch--------HHHH-HHHHhhhhhHHhcCCCceEEEE
Confidence 99999997766654 333333333 789999999999975331 0011 111111 11111 2278999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 036449 159 SSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 159 sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
||++|.|+++++++|...+...
T Consensus 148 SAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 148 SALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CSSSSCSSHHHHHHHHHHHTTC
T ss_pred ECCCCCCchhHHHHHHHhhhcc
Confidence 9999999999999999887643
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=1.9e-22 Score=156.32 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=104.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------N--G----STVN 55 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~ 55 (197)
|+..+.++|+++|+.++|||||++++.+.. +..+..+ |....+.. .... + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 455678999999999999999999998432 2222222 32211111 1110 1 1 1367
Q ss_pred EEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~ 131 (197)
+.+||+||++.|.......+..+|++|+|+|++++ ++.+.+ ..+... ...|+++++||+|+.....
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~---- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQ---- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHH----
Confidence 89999999999988887888899999999999965 333333 222222 2358999999999976431
Q ss_pred CCCCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 132 HPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.....++..++...+ ...+++++||++|.|+++++++|.+.+...
T Consensus 153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 112345556665542 223899999999999999999999877654
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=7e-23 Score=149.95 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=106.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCccccccccc--------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPT--VFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP-------- 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------- 72 (197)
.+.++|+++|.+|+|||||++++++.. +.....++ +..........++ ..+.+|||||+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 356999999999999999999999876 44444343 3333344455566 4577999999876543222
Q ss_pred ---cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEee-CCcccCCcccccCCCCCCcccH-------H
Q 036449 73 ---LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT-KLDLRDDKQFFIDHPGAVPIST-------A 141 (197)
Q Consensus 73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~n-K~D~~~~~~~~~~~~~~~~~~~-------~ 141 (197)
.++..+|++|+|+|+++..........++..+.......|.++|+| |+|+.... ... .
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~ 166 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK 166 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence 2568899999999998633222111223332211111356666666 99997432 111 3
Q ss_pred HHHHHHHHhCCCc--e--EEeccCCCCCHHHHHHHHHHHHcC
Q 036449 142 QGEELRKLIGAPA--Y--IECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 142 ~~~~~~~~~~~~~--~--~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+++.+....+... + +++||+++.|++++|++|.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 3445666665411 2 789999999999999999998765
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=1.5e-22 Score=162.20 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=117.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC-----CCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---NGSTVNLGLWDT 61 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~-----~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~ 61 (197)
|+.++..+|+++|+.++|||||+++++.. .+... ...+. +... ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 55677899999999999999999999752 22111 00000 0000 111222 455688999999
Q ss_pred CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH
Q 036449 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA 141 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (197)
||+.+|...+...+..+|++|+|+|++++.+.+.. ..|..... .+.|+++|+||+|+...+. ..
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~~------------~~ 144 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSADV------------DR 144 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCCH------------HH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccCH------------HH
Confidence 99999988888889999999999999999888776 55555443 2689999999999965321 23
Q ss_pred HHHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 142 QGEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
...++.+..+.. +++++||++|.|+++++++|.+.+....
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 345566666653 4899999999999999999999887654
No 140
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=2.2e-23 Score=157.78 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=92.5
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHY--APGVPIILVGTK 119 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK 119 (197)
..+.+++||++|++.+++.|..++++++++|+|||++ +..+++.. ..|+..+... .+++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 78889988 5565555442 268999999999
Q ss_pred CcccCCccc---------ccCCC--CCCcccHHHHHHHHHHh--------------C-CCceEEeccCCCCCHHHHHHHH
Q 036449 120 LDLRDDKQF---------FIDHP--GAVPISTAQGEELRKLI--------------G-APAYIECSSKTQQNVKAVFDAA 173 (197)
Q Consensus 120 ~D~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~sa~~~~~i~~l~~~i 173 (197)
+|+..++.. ..+.. .....+.+++..++... + ...+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 999653320 00000 00112356677764431 1 2136899999999999999999
Q ss_pred HHHHcC
Q 036449 174 IRVVLQ 179 (197)
Q Consensus 174 ~~~~~~ 179 (197)
.+.+..
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=3.8e-23 Score=161.74 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=107.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 74 (197)
..++|+++|.+|+|||||++++.+.. +.....+++.+.....+.+++ ..+.+|||||+..+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 34789999999999999999998753 345556666666666677777 456799999986554322 236
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+.+... .. ....+. .+ .+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~-~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE--NI-TQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT--TC-CC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc--cC-Cc
Confidence 788999999999999877655 35555553 469999999999976543 11 011111 23 37
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++++||++|.|+++++++|.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999887653
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=1.7e-23 Score=156.41 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=94.5
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHh-hhC-CCCCEEEEeeCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELK-HYA-PGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~-~~~-~~~~~ivv~nK~ 120 (197)
.+.+++||++||+.+++.|..++++++++|+|||++ +..++.+. ..|+..+. ... +++|+++++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 378999999999999999999999999999999665 66778777 34444443 333 689999999999
Q ss_pred cccCCccc---c----cCCCCCCcccHHHHHHHHH----------HhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 121 DLRDDKQF---F----IDHPGAVPISTAQGEELRK----------LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 121 D~~~~~~~---~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
|+..++.. . .+.. ....+.+++..+.. ..+. .+++|||+++.||+++|..+.+.+.+..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~-g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYD-GPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCC-SCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhcc-CCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 99754310 0 0111 11356777877743 3344 6789999999999999999999887653
No 143
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=1.4e-23 Score=158.43 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccCcC---CC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----YNRLRPLSYR---GA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~ 78 (197)
.+|+++|.++||||||++++...... ..+..++.......+.+++ ...+.+||+||..+ +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999976532 3333333222222344443 14578999999643 3334444444 49
Q ss_pred cEEEEEEeCCC---chhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449 79 DVFILAFSLIS---KASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA 152 (197)
Q Consensus 79 ~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++|+|+|+++ +.+++.+ ..|...+.... .+.|+++|+||+|+... .+....+++.++.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l~~ 302 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKLTD 302 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHCCS
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHhhc
Confidence 99999999998 7888887 68888887764 37999999999999542 1344566666652
Q ss_pred -CceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 153 -PAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 153 -~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
.+++++||+++.|+++++++|.+.+...+.
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 379999999999999999999999977654
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=144.69 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCc-----------cccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP---TVFDNFSANVVVNGSTVNLGLWDTAGQ-----------EDYN 68 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~ 68 (197)
..+.++|+++|.+|+|||||++++++..+.....+ ++.........+++ ..+.+|||||. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34679999999999999999999998877544333 22333344455666 45779999994 2344
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE 145 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
......+..+|++|+|+|+++..... ..++..+.... ...|+++|+||+|+...... ........+..+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~i~~~~~~l~~ 176 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTNL----HDYLREAPEDIQD 176 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC----------------CHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCcccH----HHHHHhchHHHHH
Confidence 55555677899999999998654422 22333332211 24699999999999654320 0000011245778
Q ss_pred HHHHhCCCceEEeccCCC-----CCHHHHHHHHHHHHcC
Q 036449 146 LRKLIGAPAYIECSSKTQ-----QNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 146 ~~~~~~~~~~~~~sa~~~-----~~i~~l~~~i~~~~~~ 179 (197)
+.+..+. .++.+++..+ .++.++|..+.+.+.+
T Consensus 177 l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 177 LMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888887 7888877643 6899999999888754
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1e-22 Score=160.52 Aligned_cols=161 Identities=19% Similarity=0.154 Sum_probs=110.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT-------FPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSY 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 75 (197)
.+.++|+++|+.++|||||++++.+.. +..+..+ .+.+.....+.+++ ..+.+|||||+++|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999998765 1111111 11111112233455 6788999999999988888889
Q ss_pred CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-C--C
Q 036449 76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-G--A 152 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 152 (197)
..+|++|+|+|++++...+.. ..+..+... ++|+++|+||+|+.+... .....++..++.... + .
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence 999999999999984322222 222333333 688899999999975321 012234455555544 1 2
Q ss_pred CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 153 PAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
.+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 163 SSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 38999999999999999999999774
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.5e-22 Score=158.30 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=106.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----------- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 71 (197)
..++|+++|++|||||||++++.+... ...+++++.+.....+.+++. .+.+|||||..++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998754 345555555555666777775 46799999985433221
Q ss_pred -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHHHH
Q 036449 72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELRKL 149 (197)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (197)
..++..+|++++|+|++++.+.++. .+...+... +.|+++|+||+|+.+.+. ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1235568999999999988776553 344444443 799999999999975432 2222221 22222
Q ss_pred h---CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 150 I---GAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 150 ~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+ +..+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 23389999999999999999999887644
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=1.2e-22 Score=162.90 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=113.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC-----CCCc------eeeee---eEEEEE---CCeEEEEEEEeCCCc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD-----YVPT------VFDNF---SANVVV---NGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~-----~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~G~ 64 (197)
++..+|+++|+.++|||||+++++... +... ...+ .+... ...+.+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356899999999999999999998632 2110 0000 01111 111222 455788999999999
Q ss_pred cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.+|...+...+..+|++|+|+|++++.+.+.. ..|..... . +.|+++|+||+|+...+ ..+...
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~ 145 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE 145 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence 99998888889999999999999998777766 45555443 2 68999999999997532 123345
Q ss_pred HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 145 ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 145 ~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
++.+.++.. +++++||++|.|+++++++|.+.+....
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 566666652 4899999999999999999999887654
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=4.1e-24 Score=167.01 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccCcC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 76 (197)
.+|+++|.+|||||||++++.+..+. ....+++.+.......+.+ ..+.+|||||++ .+...+..++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999986553 3333333333333333334 467899999985 45566677888
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++|+|+|++++.+..+. .+...++. .+.|+++|+||+|+..... +..++. ..+...++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence 99999999999998776543 44455544 3789999999999865321 001122 24554789
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
++||++|.|+.++++++.+.+.+
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999999999998864
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.89 E-value=5.2e-22 Score=150.83 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=86.0
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKH-YA-PGVPIILVGTKLD 121 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D 121 (197)
+.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+.. .. +++|+++++||+|
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence 778999999999999999999999999999999999 7788888 455554443 22 6899999999999
Q ss_pred ccCCccc---c--cCCCCCC-cccHHHHHHHHH-----------HhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 122 LRDDKQF---F--IDHPGAV-PISTAQGEELRK-----------LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 122 ~~~~~~~---~--~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
+..+... . ..++... .++.+++..++. ..+. .+++|||+++.||+++|+++.+.+..
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence 9643210 0 0000001 145677777652 2234 68899999999999999999988754
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=8.3e-22 Score=152.89 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=109.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEEE
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------N--G----STVNLG 57 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~ 57 (197)
....++|+++|+.++|||||+++|.+.. +..+..+ |....+.. .... + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 2222222 22211111 1100 0 1 136789
Q ss_pred EEeCCCccccccccccCcCCCcEEEEEEeCCCch----hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+|||||++.|.......+..+|++|+|+|++++. +.+.+ ..+... ...|+++|+||+|+.+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~------ 154 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEK------ 154 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHH------
Confidence 9999999999887777788899999999999653 33332 222222 1358999999999976321
Q ss_pred CCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 134 GAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.....++..++.... ...+++++||++|.|+++++++|.+.+...
T Consensus 155 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 155 --ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp --HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred --HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 001233444554431 223899999999999999999999877654
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=2.7e-22 Score=155.39 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=114.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhC--------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSN--------TFPTD--YVP-----TVFDNF-SANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~--------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
....++|+++|++++|||||+++|... .+... ... +.+... .....++.....+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999863 11110 000 001111 12223333335678999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
|.......+..+|++|+|+|++++...+. ..++..+... ++| +++++||+|+..... ......++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~ 156 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD 156 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence 98888888999999999999998765443 3455555544 688 899999999974221 00012235566
Q ss_pred HHHHhCC----CceEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 036449 146 LRKLIGA----PAYIECSSKTQQN------------------VKAVFDAAIRVVLQP 180 (197)
Q Consensus 146 ~~~~~~~----~~~~~~sa~~~~~------------------i~~l~~~i~~~~~~~ 180 (197)
+...++. .+++++||++|.| +.++++.|.+.+...
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 7777663 4899999999987 888888888876543
No 152
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=2.2e-22 Score=150.86 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=94.1
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCc
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D 121 (197)
.+.+++||++||+.+++.|..++++++++|+|||++ +..++.+....|...+.... +++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 477899999999999999999999999999999998 77888888444444444433 6899999999999
Q ss_pred ccCCcccc-----cCCCCCCcccHHHHHHHHHHhC--------------------------CCceEEeccCCCCCHHHHH
Q 036449 122 LRDDKQFF-----IDHPGAVPISTAQGEELRKLIG--------------------------APAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~sa~~~~~i~~l~ 170 (197)
+..++... .........+.+++..+..... ...+++|||++..||+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 97543211 0011111124566655543321 2267899999999999999
Q ss_pred HHHHHHHcC
Q 036449 171 DAAIRVVLQ 179 (197)
Q Consensus 171 ~~i~~~~~~ 179 (197)
+.+...+..
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=2.7e-22 Score=156.61 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=104.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCC------------------------------CCceeeeeeEEEE
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV 48 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~------------------------------~~~~~~~~~~~~~ 48 (197)
|++.+.++|+++|+.++|||||+++|+.. .+.... ...+.+.....
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~-- 78 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR-- 78 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE--
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEE--
Confidence 66778899999999999999999999864 332110 00110011111
Q ss_pred ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHH------HHHHHHHhhhCCCC-CEEEEeeCCc
Q 036449 49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS------KKWIPELKHYAPGV-PIILVGTKLD 121 (197)
Q Consensus 49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~-~~ivv~nK~D 121 (197)
++.....+.+|||||+++|...+..++..+|++|+|+|+++ .+|+... .......... +. ++++++||+|
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~D 155 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMD 155 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGG
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEccc
Confidence 22233668899999999999888889999999999999998 5565431 1222222222 44 6899999999
Q ss_pred ccCCcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHHHH
Q 036449 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l~~ 171 (197)
+.+.... ........++.+.++...+. .+++++||++|.|+.+++.
T Consensus 156 l~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 156 LTEPPYD----EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp GSSSTTC----HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCCcccc----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 9762100 00001224556777777763 3799999999999986543
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.5e-21 Score=141.79 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=106.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCc--------cccccccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP---TVFDNFSANVVVNGSTVNLGLWDTAGQ--------EDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~ 72 (197)
...++|+++|.+|+|||||++++++........+ ++..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 4679999999999999999999998776433222 22233334445555 56779999996 33332222
Q ss_pred cC----cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449 73 LS----YRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE 144 (197)
Q Consensus 73 ~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.. ...+|++|+|+|+++....+ ..++..+...+ .+.|+++++||.|+....... .......+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~----~l~~~~~~~l~ 169 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHD----YVSNTENRALR 169 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH----HHHHCCCHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHH----HHhhcccHHHH
Confidence 22 38999999999998632222 23333333322 368999999999996532100 00000113467
Q ss_pred HHHHHhCCCceEEeccCC-----CCCHHHHHHHHHHHHcCC
Q 036449 145 ELRKLIGAPAYIECSSKT-----QQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 145 ~~~~~~~~~~~~~~sa~~-----~~~i~~l~~~i~~~~~~~ 180 (197)
.+.+..+. .++.+++.. +.++.+|++.|.+.+.+.
T Consensus 170 ~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 170 ELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77888887 677776654 579999999999988753
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=2.4e-21 Score=151.28 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=102.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCC------------------------------CCceeeeeeEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~ 51 (197)
...++|+++|++++|||||+++|+... +.... ...+.+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 467999999999999999999996431 11100 011111111222233
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCcccC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IILVGTKLDLRD 124 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~ 124 (197)
...+.+|||||+++|.......+..+|++|+|+|++++.. ++ .. ...+..+... +.| +++|+||+|+..
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 3578899999999999988889999999999999998642 11 11 1222222222 567 999999999953
Q ss_pred CcccccCCCCCCcccHHHHHHHHHHhCC-----CceEEeccCCCCCHHHHHH
Q 036449 125 DKQFFIDHPGAVPISTAQGEELRKLIGA-----PAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~ 171 (197)
.... ........++...+....+. .+++++||++|.|++++++
T Consensus 170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2100 00011223344555555553 3699999999999999655
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=6.1e-21 Score=145.34 Aligned_cols=161 Identities=21% Similarity=0.160 Sum_probs=108.0
Q ss_pred eE-EEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc---------cccccccCc
Q 036449 7 IK-CVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED---------YNRLRPLSY 75 (197)
Q Consensus 7 ~~-i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 75 (197)
++ |+++|.+|+|||||++++.+..+. .++..++.+.....+.+++ ..+.+|||+|.-. |.+.+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 999999999999999999987653 2333444445556677777 4567999999621 222222 46
Q ss_pred CCCcEEEEEEeCCCch--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-C
Q 036449 76 RGADVFILAFSLISKA--SYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-G 151 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (197)
..+|++++|+|++++. ..+.. ..|...+.... .+.|+++|+||+|+.+... ......+..++..+ .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 7899999999999886 44444 45566665543 5789999999999965321 01112333444554 2
Q ss_pred -CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 152 -APAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 152 -~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
..+++++||+++.|++++++.|.+.+...
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 22689999999999999999999876543
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=1.5e-21 Score=150.78 Aligned_cols=165 Identities=19% Similarity=0.150 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC-------CCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCcccccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT-------FPTD--YVP-----TVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~-------~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~ 69 (197)
+.++|+++|+.++|||||+++|.... +... ... ..+... .....+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998631 1100 000 000000 11122333335688999999999988
Q ss_pred ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
.....+..+|++|+|+|++++...+.. .++..+... ++| +++++||+|+..... ......++.+++++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT 150 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence 888889999999999999987655443 233444443 688 789999999974211 00012345667777
Q ss_pred HhCC----CceEEeccCCCCC----------HHHHHHHHHHHHcCC
Q 036449 149 LIGA----PAYIECSSKTQQN----------VKAVFDAAIRVVLQP 180 (197)
Q Consensus 149 ~~~~----~~~~~~sa~~~~~----------i~~l~~~i~~~~~~~ 180 (197)
.++. .+++++||++|.| +.++++.|.+.+..+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 7763 3899999999764 899999998877643
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-22 Score=140.15 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=84.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCC---
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--- 77 (197)
.+.++|+++|.+|||||||++++.+..+.. .+.++... +...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 466899999999999999999999887643 12222211 1123567899999999988777777665
Q ss_pred -CcEEEEEEeCC-CchhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCcccCCc
Q 036449 78 -ADVFILAFSLI-SKASYENVSKKWIPELKHY-----APGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~~~ivv~nK~D~~~~~ 126 (197)
+|++|+|||++ +..++..+ ..|+..+... .++.|+++|+||+|+.+..
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 88898887 4554444322 2589999999999997654
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=4.1e-21 Score=154.23 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=106.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANV-------------VVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~G~~~ 66 (197)
.+.++|+++|++++|||||++++.+..+.... ..+.+..+.... .++.....+++|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46789999999999999999999876543321 122221111100 0000112488999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCC---chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC-----C--CCCC
Q 036449 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----H--PGAV 136 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~-----~--~~~~ 136 (197)
|..++...+..+|++|+|+|+++ +++++.+ ..+... +.|+++++||+|+.+....... . ....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999999 4554433 223333 7999999999999653210000 0 0000
Q ss_pred cccH---H---HHHHHHHHhC--------------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 137 PIST---A---QGEELRKLIG--------------APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 137 ~~~~---~---~~~~~~~~~~--------------~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
.+.. + +........+ ..+++++||++|.|+++++++|...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0000 0 0111111111 227899999999999999999998765
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=2.2e-23 Score=163.76 Aligned_cols=161 Identities=18% Similarity=0.242 Sum_probs=105.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++..+|+++|+.++|||||++++....+.....+...... ...+.+++ ..+.+|||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 5678999999999999999999987554433222221111 11122233 35779999999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCceEEeccC
Q 036449 83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~ 161 (197)
+|+|++++...+.. ..+..+... +.|+++++||+|+...+....... .. +...++..++ ..+++++||+
T Consensus 80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~----l~--~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE----LS--QYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC----CC--CCCCCTTCCSSSCEEEECCTT
T ss_pred EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHH----HH--HhhhhHHHhCCCccEEEEeee
Confidence 99999985332222 112223333 789999999999975321000000 00 0000111222 2389999999
Q ss_pred CCCCHHHHHHHHHHH
Q 036449 162 TQQNVKAVFDAAIRV 176 (197)
Q Consensus 162 ~~~~i~~l~~~i~~~ 176 (197)
+|.|++++|++|...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998764
No 161
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.86 E-value=8.8e-21 Score=145.23 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=93.0
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCc
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIILVGTKLD 121 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D 121 (197)
+.+++||++|++.+++.|..++++++++|+|||+++ ..+++.+ ..|+..+... .+++|++||+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 789999999999999999999999999999999999 8899998 6676666543 37899999999999
Q ss_pred ccCCcc---cc------cCCC----------CCCc-ccHHHHHHHH-----HHh-------CCCceEEeccCCCCCHHHH
Q 036449 122 LRDDKQ---FF------IDHP----------GAVP-ISTAQGEELR-----KLI-------GAPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 122 ~~~~~~---~~------~~~~----------~~~~-~~~~~~~~~~-----~~~-------~~~~~~~~sa~~~~~i~~l 169 (197)
+...+. +. .+.. ..-. .+.+++..|+ +.. ....+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 965432 10 0000 0000 1235555553 221 1225679999999999999
Q ss_pred HHHHHHHHcCC
Q 036449 170 FDAAIRVVLQP 180 (197)
Q Consensus 170 ~~~i~~~~~~~ 180 (197)
|..+...+...
T Consensus 376 F~~v~~~I~~~ 386 (402)
T 1azs_C 376 FNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=8.9e-22 Score=155.56 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=97.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC------------------------------CCCceeeeeeEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD------------------------------YVPTVFDNFSANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~------------------------------~~~~~~~~~~~~~~~~~ 51 (197)
...+||+++|.+++|||||+++|+.... ... ....+.+. ....++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEec
Confidence 4569999999999999999999975411 100 00111111 1122233
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
..+.+.+|||||+++|......++..+|++|+|+|++++.+... ............ ...|+++|+||+|+.+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 34678899999999999998889999999999999998754321 112222222222 235699999999997633
Q ss_pred ccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449 127 QFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~ 168 (197)
.. ......++...+....+. .+++++||++|.|+++
T Consensus 188 ~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HH------HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HH------HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 20 000112233444444443 2789999999999875
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=3.5e-21 Score=152.91 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=83.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-------------C----C------CCceeeeeeEEEEECCeEEEEEEEe
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-------------D----Y------VPTVFDNFSANVVVNGSTVNLGLWD 60 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-------------~----~------~~~~~~~~~~~~~~~~~~~~~~i~D 60 (197)
.+..+|+++|++|+|||||+++|+...... . + ...+.......+.+.+ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 356899999999999999999996211100 0 0 0001111122333444 6788999
Q ss_pred CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|||+.+|......++..+|++|+|+|++++.+.+.. .. +..+... ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~-~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KL-MEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HH-HHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HH-HHHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999888899999999999999998777665 33 3444444 7899999999999643
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=4e-21 Score=150.02 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=102.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC----------CCCceeeee--------------------eEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~ 51 (197)
...++|+++|+.++|||||+++|+... +... ..++++..+ .....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998653 1111 112211100 00111222
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCcccCCccccc
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-PIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-~~ivv~nK~D~~~~~~~~~ 130 (197)
....+.+|||||+++|......++..+|++|+|+|++++...+.. .++..+... +. |+++|+||+|+.+....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~-- 175 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER-- 175 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH--
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH--
Confidence 336788999999999988888889999999999999987544432 344444333 44 59999999999753210
Q ss_pred CCCCCCcccHHHHHHHHHHhC--C--CceEEeccCCCCCHHHH
Q 036449 131 DHPGAVPISTAQGEELRKLIG--A--PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~sa~~~~~i~~l 169 (197)
......++...+++.++ . .+++++||++|.|++++
T Consensus 176 ----~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 ----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ----HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 00012345566777776 1 27999999999999874
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2e-22 Score=153.62 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=86.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCc-------ccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYV--------PTVFDN-FSANVVVNGSTVNLGLWDTAGQ-------EDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~-------~~~ 67 (197)
..++|+++|++|+|||||+++++... +...+. ++.... .......++..+.+++|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 45899999999999999999976543 333222 232211 1222333566678999999998 556
Q ss_pred ccccc-------cCcC-----------CCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 68 NRLRP-------LSYR-----------GADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 68 ~~~~~-------~~~~-----------~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
..++. .++. ..++.+++|++++ ..++......|+..+. .+.|+++|+||+|+...+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence 55543 3332 2222345555544 4455555334555442 5799999999999976443
Q ss_pred ccCCCCCCcccH--HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 129 FIDHPGAVPIST--AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
+.. +++..++...++ +++++||+++.+ ++.|..+.+.+...
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 222 466677777777 899999999998 88888887776543
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=8.7e-22 Score=145.15 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=89.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCcccc-------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-------VPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDY------- 67 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 67 (197)
...++|+++|.+|+|||||+++++.... ...+ .+|.. ......+..++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4569999999999999999999876543 3333 33332 222333334555578999999997322
Q ss_pred cccc--------------------ccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 68 NRLR--------------------PLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 68 ~~~~--------------------~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
..+. ...-..+|+++++++.+.. ..-.+ ..++..+.. +.|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 1111 1112247899999977652 22222 345555554 68999999999986432
Q ss_pred ccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
.. ........+.....+. +++++||+++.|+++++++|.+.+
T Consensus 161 e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 EC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 20 0111234455556676 799999999999999999998754
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=3.6e-22 Score=156.88 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=101.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC--------ccccccccccC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG--------QEDYNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 74 (197)
+..+|+++|.+|||||||++++.+..+. ...++++.+.... ........+++||||| ++.+......+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3578999999999999999999986543 2223333222222 2222335688999999 66677777778
Q ss_pred cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449 75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++|+|+|..++.+..+ ..+...++.. +.|+++|+||+|+..... ...++. ..+...
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~ 160 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE 160 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence 889999999999887654443 2445555543 899999999999864321 011111 233436
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 155 YIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 155 ~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
.+++||++|.|+.++++.+.+.+..
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred eEEeecccccchHHHHHHHHhhccc
Confidence 7899999999999999999887653
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=4.5e-21 Score=150.46 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=102.8
Q ss_pred CC-CCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC-------------------------------CCCceeeeeeEE
Q 036449 1 MS-ASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD-------------------------------YVPTVFDNFSAN 46 (197)
Q Consensus 1 m~-~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~ 46 (197)
|. +...++|+++|++++|||||+++|+.. .+... .-.|.. .....
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~-~~~~~ 79 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWK 79 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEE-EEEEE
Confidence 55 356799999999999999999999863 22110 001111 11112
Q ss_pred EEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hH----HHHHHHHHHHHhhhCCCCC-EEEEee
Q 036449 47 VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY----ENVSKKWIPELKHYAPGVP-IILVGT 118 (197)
Q Consensus 47 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~i~~~~~~~~-~ivv~n 118 (197)
++.....+.+|||||+++|......++..+|++|+|+|++++. +| +.. ..+...... ++| +++|+|
T Consensus 80 --~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~~--~v~~iivviN 153 (458)
T 1f60_A 80 --FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVN 153 (458)
T ss_dssp --EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEE
T ss_pred --EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHHc--CCCeEEEEEE
Confidence 2223367889999999999988888999999999999999763 22 222 222223332 566 899999
Q ss_pred CCcccCCcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l 169 (197)
|+|+.+... .......++...++..++. .+++++||++|.|+.++
T Consensus 154 K~Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999974211 0001223455666677763 48999999999998743
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=5e-21 Score=146.19 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|++++|||||+++|... ..|.. ... ..+......+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~-~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSD-ITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESS-SEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEE-eeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 8999999999999999999811 11111 111 1222223568899999999998777777899999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCcccCCcccccCCCCCCcccHHHHHHHHHHhC--CCceEE--eccC
Q 036449 88 ISKASYENVSKKWIPELKHYAPGVPI-ILVGT-KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG--APAYIE--CSSK 161 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~sa~ 161 (197)
++... ... ..++..+... +.|. ++++| |+|+ +.... ....++.+++...++ ..++++ +||+
T Consensus 93 ~~g~~-~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~--------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 93 PQGLD-AHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI--------DELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp TTCCC-HHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------HHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred CCCCc-HHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------HHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 65432 233 3455555544 6777 88999 9999 43210 011244455555443 238999 9999
Q ss_pred C---CCCHHHHHHHHHHHHcC
Q 036449 162 T---QQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 162 ~---~~~i~~l~~~i~~~~~~ 179 (197)
+ +.|++++++.|.+.+..
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhccc
Confidence 9 99999999999987654
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1.4e-21 Score=153.71 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhh--CCCCC------------------------C-------CCCceeeeeeEEEE
Q 036449 2 SASRFIKCVTVGDGAVGKTCLLISYTS--NTFPT------------------------D-------YVPTVFDNFSANVV 48 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~------------------------~-------~~~~~~~~~~~~~~ 48 (197)
...+.++|+++|+.++|||||+++|+. +.+.. + ...|.... ...+.
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~ 117 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFE 117 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEE
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEe
Confidence 345679999999999999999999874 22210 0 00111100 11222
Q ss_pred ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCcc
Q 036449 49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--SKKWIPELKHYAPGVP-IILVGTKLDL 122 (197)
Q Consensus 49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~~-~ivv~nK~D~ 122 (197)
.++ ..+.+|||||+++|.......+..+|++|+|+|++++. +|+.. ....+..... .++| +++++||+|+
T Consensus 118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDE 193 (467)
T ss_dssp CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTS
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccC
Confidence 333 56889999999999998888999999999999999863 22211 0111222222 2677 9999999999
Q ss_pred cCCcccccCCCCCCcccHHHHHHHHHHh-CC-----CceEEeccCCCCCHHHHH
Q 036449 123 RDDKQFFIDHPGAVPISTAQGEELRKLI-GA-----PAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~sa~~~~~i~~l~ 170 (197)
...... ........++...++... +. .+++++||++|.|+.+++
T Consensus 194 ~~~~~~----~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCcccc----HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 542100 000012233456666665 43 269999999999998765
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.6e-21 Score=152.88 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=100.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------------------CCceeeeeeEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 51 (197)
...++|+++|++++|||||+++|+.....-.. ...+.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45799999999999999999999865321110 1111111122233333
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H--HHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y--ENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
..+.||||||+++|......++..+|++|+|+|++++.. + .......+...... ...|+++|+||+|+....
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTC
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchh
Confidence 578899999999999999999999999999999987521 0 00101222222222 123599999999997632
Q ss_pred ccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449 127 QFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l 169 (197)
.. .......+...+....+. .+++++||++|.|+.++
T Consensus 322 ~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 10 000112344455555543 37999999999999866
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=8.4e-21 Score=159.48 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=112.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCC-------CCC-------CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNT-------FPT-------DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~ 67 (197)
..+.++|+++|++++|||||+++|.... +.. ....+.+.+. .....++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3466999999999999999999998631 000 0001111111 111223333467889999999999
Q ss_pred ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449 68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
.......+..+|++|+|+|++++...+.. .++..+... ++| +++++||+|+..... ......++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~el 441 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVREL 441 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHH
Confidence 88888889999999999999987544332 344445444 688 789999999975221 000123456677
Q ss_pred HHHhCC----CceEEeccCCC--------CCHHHHHHHHHHHHcC
Q 036449 147 RKLIGA----PAYIECSSKTQ--------QNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 147 ~~~~~~----~~~~~~sa~~~--------~~i~~l~~~i~~~~~~ 179 (197)
...++. .+++++||++| .|+.++++.|.+.+..
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 777663 38999999999 4699999999886654
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=2.8e-20 Score=131.73 Aligned_cols=163 Identities=13% Similarity=-0.002 Sum_probs=100.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc----------ccccc
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQED----------YNRLR 71 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~----------~~~~~ 71 (197)
..+..+|+++|++|+|||||++++.+..+.....++.+.... ..+.+++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 456689999999999999999999877643333444433221 2222333 366999999742 22222
Q ss_pred ccCc---CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449 72 PLSY---RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK 148 (197)
Q Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..++ ..++++++++|++++.+..+. .+...+... +.|+++++||+|+..... +....+.++.++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence 2222 568899999999987665432 222333333 689999999999865321 0011344555555
Q ss_pred HhCC-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 149 LIGA-PAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 149 ~~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
..+. ..++++||+++.+++++++.|.+.+.+.
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 5542 2678899999999999999999887653
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=2.4e-21 Score=144.44 Aligned_cols=159 Identities=21% Similarity=0.177 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC------CCCc-----------------------eeee-------------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD------YVPT-----------------------VFDN------------- 42 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~------~~~~-----------------------~~~~------------- 42 (197)
..++|+|+|.+|+|||||++++.+..+.+. ..|+ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999998876421 1122 0000
Q ss_pred ------e--eEEEEE-CCeEEEEEEEeCCCcc-------------ccccccccCcCCCcEEE-EEEeCCCchhHHHHHHH
Q 036449 43 ------F--SANVVV-NGSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISKASYENVSKK 99 (197)
Q Consensus 43 ------~--~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 99 (197)
. ...+.+ ......+.+|||||.. .+......++..++.+| +|+|+++..+..+. ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 0 000000 0012568899999964 23345556777888666 79999886554443 24
Q ss_pred HHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH--HHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL--RKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 100 ~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
+...+... +.|+++|+||+|+.+... ...+..+.. ....+..+++++||+++.|+++++++|.+.
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55555443 789999999999975432 111111110 001122367889999999999999998873
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=6.5e-20 Score=134.29 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=85.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcC-----
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR----- 76 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 76 (197)
.+.++|+++|.+|+|||||++++.+..+ ...+.+++..........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3679999999999999999999998774 34444444444444555666 47789999999877655444332
Q ss_pred ----CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CC--CCEEEEeeCCcccCC
Q 036449 77 ----GADVFILAFSLISKASYENVSKKWIPELKHYA-PG--VPIILVGTKLDLRDD 125 (197)
Q Consensus 77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~--~~~ivv~nK~D~~~~ 125 (197)
.+|++++|+|++... +......|+..+.... ++ .|+++|+||+|+.+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 3333346667666654 22 499999999999643
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.3e-21 Score=155.14 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=89.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVNG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~ 51 (197)
...++|+++|++++|||||+++|+... +... ...++....... +..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EEe
Confidence 467899999999999999999996321 1100 000011111111 122
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hH--HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~ 125 (197)
....+.||||||++.|.......+..+|++|+|+|++++. .+ .......+..+... ++| +++|+||+|+...
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 3367889999999999999989999999999999998642 11 11101222233333 565 9999999999753
Q ss_pred cccccCCCCCCcccHHHHHHHH-HHhCCC----ceEEeccCCCCCHH--------------HHHHHHHHHH
Q 036449 126 KQFFIDHPGAVPISTAQGEELR-KLIGAP----AYIECSSKTQQNVK--------------AVFDAAIRVV 177 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~sa~~~~~i~--------------~l~~~i~~~~ 177 (197)
... .......+...+. ...+.. +++++||++|.|+. .|++.|.+.+
T Consensus 331 ~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 210 0001122333443 334442 68999999999998 6777776644
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=2.1e-20 Score=139.34 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=108.9
Q ss_pred HHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-hHHHHHH
Q 036449 21 CLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSK 98 (197)
Q Consensus 21 tli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 98 (197)
+|+.++..+.|. ..+.||.++.+......++ .+++||+ +++|..++..++.++|++|+|||++++. ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 678888888888 7888999877664432222 5789999 9999999999999999999999999997 67776 7
Q ss_pred HHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC--CCceEEeccCCCCCHHHHHHHHHH
Q 036449 99 KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG--APAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 99 ~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
.|+..+... ++|+++|+||+|+.+.+. + +++.++++.++ . +++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 888877653 899999999999965332 1 44667777776 6 8999999999999999988754
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=4.2e-19 Score=144.87 Aligned_cols=116 Identities=20% Similarity=0.107 Sum_probs=81.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce----------------e-eeeeEEEEECCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----------------F-DNFSANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
.+..+|+++|+.|+|||||++++...........+. + ........+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456899999999999999999998433211000000 0 01111122222247788999999999
Q ss_pred cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449 67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~ 123 (197)
|......++..+|++++|+|.++....+.. .++..+... +.|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888889999999999999887665443 444555444 79999999999986
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=5.1e-18 Score=134.97 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCC----------Cce----------eee---eeEEEEECCeEEEEEEEe
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV----------PTV----------FDN---FSANVVVNGSTVNLGLWD 60 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----------~~~----------~~~---~~~~~~~~~~~~~~~i~D 60 (197)
.+..+|+++|++|+|||||+++++.....-... .+. +.. ....+...+ +.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 357899999999999999999998632110000 000 000 011223333 6788999
Q ss_pred CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|||+..|......++..+|++|+|+|++++..... ..++..+... ++|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 99999998888888999999999999998754332 2334444333 7999999999999754
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=1.1e-18 Score=128.32 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=81.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc---------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------- 73 (197)
+.++|+++|.+|+|||||++++++..+. ....+++..........++ ..+.+|||||+.++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999999999999987753 3333333323333333444 67889999998776533221
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCcccCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIILVGTKLDLRDD 125 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~~~ivv~nK~D~~~~ 125 (197)
....+|++++|+|++.. ++......|+..+..... + .|+++|+||+|+.+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 23468999999998754 343333467777765532 2 699999999999654
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=6.1e-19 Score=144.49 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCcee--------eeeeEEEEE--------------------------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVF--------DNFSANVVV-------------------------- 49 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~--------~~~~~~~~~-------------------------- 49 (197)
..++|+|+|.+|+|||||+|++++..+.. ...|++. ........+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 56899999999999999999999876422 2222220 000001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccc---cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHH
Q 036449 50 --------------------NGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL 104 (197)
Q Consensus 50 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i 104 (197)
+... ..+.+|||||... .......++..+|++|+|+|.+++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 2478999999654 334455677889999999999998887776 4555455
Q ss_pred hhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc--HHHHH-----HHHHHhC-------CCceEEeccC---------
Q 036449 105 KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS--TAQGE-----ELRKLIG-------APAYIECSSK--------- 161 (197)
Q Consensus 105 ~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~-------~~~~~~~sa~--------- 161 (197)
... +.|+++|+||+|+...... +........ ..... .+....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 6789999999999653210 000000000 00111 1111111 1268999999
Q ss_pred -----CCCCHHHHHHHHHHHHcCC
Q 036449 162 -----TQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 162 -----~~~~i~~l~~~i~~~~~~~ 180 (197)
++.|+++++..|.+.+...
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred chhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999877654
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=3.2e-18 Score=140.12 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCC------C------------CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFP------T------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
.+..+|+++|+.|+|||||+++++.. .+. . ....|.. .....+.+.+ +.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence 46789999999999999999999842 111 0 0111111 1112233343 6788999999
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
+.+|...+..++..+|++|+|+|++++.+.+.. ..|.. +... +.|+++|+||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 999988888889999999999999998887765 44443 3333 7999999999999754
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1e-19 Score=135.51 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=85.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC-CCCCCC--------CCceee-eeeEEEEECCeEEEEEEEeCCCc-------cccc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN-TFPTDY--------VPTVFD-NFSANVVVNGSTVNLGLWDTAGQ-------EDYN 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~-------~~~~ 68 (197)
.++|+++|++|+|||||++.+... .++... .++... .........+....+++||++|. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 489999999999999999998764 333322 111111 11111122344567899999998 4444
Q ss_pred cccc-------cCcC-------------CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449 69 RLRP-------LSYR-------------GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 69 ~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~ 128 (197)
.+.. .++. .+++++++.+.+. .+++..... .+....++.++++|+||+|+.....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~---~l~~l~~~~~iilV~~K~Dl~~~~e- 172 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVA---FMKAIHNKVNIVPVIAKADTLTLKE- 172 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHH---HHHHHTTTSCEEEEECCGGGSCHHH-
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHH---HHHHHHhcCCEEEEEEeCCCCCHHH-
Confidence 3322 2211 2334455444332 133333223 3333334689999999999975332
Q ss_pred ccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449 129 FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 180 (197)
.....++++++++.+++ +++++||+++ +++++|..+.+.+...
T Consensus 173 -------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 -------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp -------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 01234677888888987 8999999999 9999999999988654
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=1.3e-17 Score=136.64 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhh--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVNGSTVNLGLWDTAG 63 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G 63 (197)
..+..+|+++|++|+|||||+++++. +.+.. ++ ..++.......+.+.+ +.+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35678999999999999999999985 22211 00 0001011112233444 6788999999
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
+..|...+..++..+|++|+|+|++++.+.+.. ..|. .+... +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence 999988888888999999999999998777665 3443 34444 7899999999999753
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=1.3e-18 Score=130.66 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=69.5
Q ss_pred EEEEEEeCCCccc-------------cccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTK 119 (197)
Q Consensus 54 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK 119 (197)
..+.+|||||... +......++..+|++++|+|.++.. ..... ..+...+... +.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence 4688999999753 3344556778999999999974432 11111 2334444433 7899999999
Q ss_pred CcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC---C---CCCHHHHHHHHHHHHcCCC
Q 036449 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK---T---QQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~l~~~i~~~~~~~~ 181 (197)
+|+..... ...+.........+. .++++++. + +.|+.++++.+.+.+...+
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 99975431 111111110001112 56666554 4 6889999999988876543
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=2.9e-19 Score=136.48 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee---------------e---------------------------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN---------------F--------------------------- 43 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~---------------~--------------------------- 43 (197)
..+|+|+|.+|||||||++++.+..+......+.... +
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999977632222111000 0
Q ss_pred -----------eEEEEE-CCeEEEEEEEeCCCcccc-------------ccccccCcCCCcEEEEEEeCCCchhHHHHHH
Q 036449 44 -----------SANVVV-NGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSK 98 (197)
Q Consensus 44 -----------~~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (197)
.....+ ......+.+|||||...+ ..+...++.++|++|+|+|.++..... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence 000000 111235789999998765 445566788999999999876543222 2
Q ss_pred HHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHH
Q 036449 99 KWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 99 ~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~ 174 (197)
.|+..+.... .+.|+++|+||+|+..... ...+.+..+....+. +|+++++.++.++++.+....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCHHH
Confidence 3333333333 3789999999999976432 223333334445555 799999999888877655533
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=1.2e-17 Score=128.82 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----cccccc---CcCCCc
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY----NRLRPL---SYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~~~ 79 (197)
.|+++|++|+|||||++.+..... ...+..++.......+.+++ ...+.+||+||.... ..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 489999999999999999987642 12233332222222233332 245779999997432 122211 245689
Q ss_pred EEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449 80 VFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI 156 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.++.++|++ ...+..+ ..+...+.... .+.|.++|+||+|+... . ..+...+.....+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence 999999998 5556665 45555554443 26799999999998642 1 12333444445565 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449 157 ECSSKTQQNVKAVFDAAIRVVLQPPK 182 (197)
Q Consensus 157 ~~sa~~~~~i~~l~~~i~~~~~~~~~ 182 (197)
.+||+++.|+++++++|.+.+...+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEECCCccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999877654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=3.5e-17 Score=134.23 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC------------------CCCceeeeeeEEEEEC-----CeEEEEEE
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD------------------YVPTVFDNFSANVVVN-----GSTVNLGL 58 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~------------------~~~~~~~~~~~~~~~~-----~~~~~~~i 58 (197)
.+..+|+++|+.|+|||||+++++.. .+... ...|.... ...+.+. +..+.+++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 56789999999999999999999753 12110 00011100 1112222 23478999
Q ss_pred EeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
|||||+.+|...+..++..+|++|+|+|+++....+.. ..| ...... +.|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence 99999999988888889999999999999988665544 333 333333 7999999999998653
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=130.97 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCC-CCC-------CCceee-eeeEEEEECCeEEEEEEEeCCCccccc-------c
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDY-------VPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYN-------R 69 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~-~~~-------~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~ 69 (197)
.++|+++|++|+|||||++.+.+..+. ..+ .++... .........+....+++||++|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 478999999999999999999987653 211 111111 111111122333578999999975431 1
Q ss_pred ------------------ccccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449 70 ------------------LRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~ 130 (197)
+...++.++++.+++|+.... .++......|+..+. .+.|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e--- 184 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE--- 184 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence 123355666655555555432 344444335666664 3689999999999965433
Q ss_pred CCCCCCcccH--HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 131 DHPGAVPIST--AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
+.. ..+..++...+. +++++|++++.++.++|..+...
T Consensus 185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------
T ss_pred -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhh
Confidence 333 567778888887 89999999999999988887764
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=1.4e-17 Score=128.16 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEE--E-------------------EECC-eEEEEEEEeCCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSAN--V-------------------VVNG-STVNLGLWDTAG 63 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G 63 (197)
++|+++|.+|||||||++++.+.... ..++.++....... . .+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 23333332111111 1 1222 247799999999
Q ss_pred ccc----cccccc---cCcCCCcEEEEEEeCCCc
Q 036449 64 QED----YNRLRP---LSYRGADVFILAFSLISK 90 (197)
Q Consensus 64 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 90 (197)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 457899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=5e-17 Score=115.92 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=94.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-------------eEEEEECC------------------e
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-------------SANVVVNG------------------S 52 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~ 52 (197)
.+..+|+++|.+|+|||||++++................. .....++. .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 3567899999999999999999886422111111100000 00011110 1
Q ss_pred EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~ 132 (197)
...+.+|||+|+...... +....+.+++|+|+++..... ..+... . +.|+++|+||+|+.+...
T Consensus 108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~----- 171 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG----- 171 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT-----
T ss_pred CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh-----
Confidence 245679999985111111 112467899999998764321 122222 1 478999999999964321
Q ss_pred CCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 133 PGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
...++.....+..+ ..+++++||++|.|++++|++|.+.+....
T Consensus 172 -----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 -----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp -----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred -----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 23444555555543 237999999999999999999999886653
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.69 E-value=5.3e-18 Score=121.40 Aligned_cols=155 Identities=18% Similarity=0.116 Sum_probs=92.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-------------EEEEEC-CeE----------------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-------------ANVVVN-GST---------------- 53 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~---------------- 53 (197)
.+.++|+++|.+|||||||++++....+...+.++....+. ....++ +..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999977655444444432221 122221 111
Q ss_pred ---EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449 54 ---VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 54 ---~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~ 130 (197)
..+.++|++|.-... ..+-...+..+.++|......... .+...+ +.|.++|+||+|+.+...
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~--- 181 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVG--- 181 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHT---
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhH---
Confidence 124455665521100 011122345667777543222111 111111 468899999999965321
Q ss_pred CCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 131 DHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
...++...+++..+ ..+++++||++|.|++++|++|.+.+..
T Consensus 182 -------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 182 -------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp -------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 23455566666543 2389999999999999999999987643
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=3.4e-18 Score=130.16 Aligned_cols=158 Identities=22% Similarity=0.197 Sum_probs=92.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCcee--------------------eee---------------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--------------------DNF--------------- 43 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~~~~--------------------~~~--------------- 43 (197)
..++|+|+|.+++|||||++++.+..+.+.. .|+.. ..+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999988763221 12200 000
Q ss_pred ---------eEEEEEC-CeEEEEEEEeCCCccc-------------cccccccCcCCCc-EEEEEEeCCCchhHHHHHHH
Q 036449 44 ---------SANVVVN-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFILAFSLISKASYENVSKK 99 (197)
Q Consensus 44 ---------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 99 (197)
...+.+. .....+.+|||||... +..+...++..++ ++++|.|.+......+. ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 0001111 1125688999999632 3334445565555 55556676543322222 22
Q ss_pred HHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH--HHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449 100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE--ELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 100 ~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
+...+.. .+.|+++|+||+|+.+... ...+... .+....+..+++++||+++.|++++++.+.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3444433 3789999999999975321 0011111 0111123235678999999999999999876
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=4.6e-17 Score=124.01 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=68.9
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.+|||||... .....+..+|++++|+|.+..+..+.+ . ....+.|+++|+||+|+.+...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 5678999999432 122235789999999998776554333 1 1112468999999999965321
Q ss_pred CCCcccHHHHHHHHHH---hC------CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 134 GAVPISTAQGEELRKL---IG------APAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
. ......+... .+ ..+++++||++|.|+++++++|.+.+..
T Consensus 235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 1111222222 21 1379999999999999999999987754
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.67 E-value=1.5e-16 Score=132.75 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC----------------CCCceeeee-eEEEE------------ECC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD----------------YVPTVFDNF-SANVV------------VNG 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~----------------~~~~~~~~~-~~~~~------------~~~ 51 (197)
..+..+|+++|+.|+|||||+++++... .... ...|..... ..... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3567899999999999999999998641 1100 001111111 11111 134
Q ss_pred eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... . .+.|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H--cCCCeEEEEECCCcch
Confidence 478899999999999999988999999999999999999888776 4454433 2 2689999999999863
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=5.6e-15 Score=111.81 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc--
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN-- 68 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 68 (197)
++|+++|.+|+|||||++++.+..+. .+++.++.......+.+++. ...+++||+||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987642 33333332211222333332 1468899999987653
Q ss_pred --ccccc---CcCCCcEEEEEEeCCC
Q 036449 69 --RLRPL---SYRGADVFILAFSLIS 89 (197)
Q Consensus 69 --~~~~~---~~~~~~~~i~v~d~~~ 89 (197)
.+... .++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 3678999999999986
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=1.8e-16 Score=126.77 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=78.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCceeeeeeEE----------------------------------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP---TDYVPTVFDNFSAN---------------------------------- 46 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~~~~~~~~~~---------------------------------- 46 (197)
...++|+|+|.+|+|||||++++++..+. ....+++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988763 22222221000000
Q ss_pred ---EEECCe-EEEEEEEeCCCccc-----------cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC
Q 036449 47 ---VVVNGS-TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV 111 (197)
Q Consensus 47 ---~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~ 111 (197)
+.+.+. ...+.+|||||... |......++..+|++++|+|+++....+.. ..++..+... +.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence 000000 02478999999764 334445567789999999999885444444 4566665543 68
Q ss_pred CEEEEeeCCcccCC
Q 036449 112 PIILVGTKLDLRDD 125 (197)
Q Consensus 112 ~~ivv~nK~D~~~~ 125 (197)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999999653
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=1.6e-14 Score=115.48 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=80.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------------CCCCCce---e---eeeeEEEEECCeEEEEEEEeC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-----------------TDYVPTV---F---DNFSANVVVNGSTVNLGLWDT 61 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-----------------~~~~~~~---~---~~~~~~~~~~~~~~~~~i~D~ 61 (197)
+.=+|+++|+.++|||||..+++...-. .++.+.. + ......+.+.+ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 4457999999999999999988632110 0000000 0 01112334455 67889999
Q ss_pred CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
||+.+|.......++-+|++|+|+|+..+-..+.. ..| ...... ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchh
Confidence 99999998888889999999999999988666654 344 444444 799999999999864
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=120.35 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.++||||.... .......+|++++|+|.+++...+.+ . ..+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~---~~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-K---RGI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-H---HHH----HhcCCEEEEeeecCCCchh------
Confidence 45679999995311 12345689999999999876433222 1 111 1457899999999954211
Q ss_pred CCCcccHHHHHHHHHHh---------CCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 134 GAVPISTAQGEELRKLI---------GAPAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
. ......+.... ..++++.+||+++.|+++++++|.+.+.
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 01112222211 1237899999999999999999988764
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=4.7e-15 Score=108.34 Aligned_cols=118 Identities=12% Similarity=-0.041 Sum_probs=69.2
Q ss_pred EEEEEEeCCCccccccccc------cCcCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCcccC
Q 036449 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
+.+.+|||||+..+..... ..+.. +++++++|.+...+.......+ ...... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 4678999999876543221 13355 8889999886543333321111 111112 2689999999999965
Q ss_pred CcccccCCCCCCcc--cHHH-HHH-----------------HHHHhCC-CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 125 DKQFFIDHPGAVPI--STAQ-GEE-----------------LRKLIGA-PAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~-~~~-----------------~~~~~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
...... .... ..+. ... +++.++. .+++++||+++.|+++++++|.+.+.
T Consensus 186 ~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKER----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHH----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHH----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 321000 0000 0000 001 1234443 27999999999999999999988764
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=4.7e-14 Score=107.34 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCce-eeeeeEEEEECC-------------------eEEEEEEEeCCCcc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTV-FDNFSANVVVNG-------------------STVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~ 65 (197)
++|+++|.+|+|||||++++.+... ..+++.++ ..... ...+++ ....+++||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 6899999999999999999987542 23333332 11111 112211 12468899999987
Q ss_pred cccc----ccc---cCcCCCcEEEEEEeCCC
Q 036449 66 DYNR----LRP---LSYRGADVFILAFSLIS 89 (197)
Q Consensus 66 ~~~~----~~~---~~~~~~~~~i~v~d~~~ 89 (197)
...+ +.. ..++.+|++++|+|.++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532 211 23678999999999985
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.57 E-value=2.4e-15 Score=113.85 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=64.4
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.+|||||....... ....+|++++|+|.+....++.+ . ... . +.|.++|+||+|+.....
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~---~~~--~--~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-K---KGL--M--EVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-C---HHH--H--HHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-H---Hhh--h--cccCEEEEECCCCCChHH------
Confidence 56889999996543322 35789999999999765432221 0 011 1 357899999999965321
Q ss_pred CCCcccH--HHHHHHHHHhC------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 134 GAVPIST--AQGEELRKLIG------APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
... ++.+......+ ..+++++||++|.|+++++++|.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 11222112222 237899999999999999999998764
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.53 E-value=5e-14 Score=104.90 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred ccccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc-HH
Q 036449 64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS-TA 141 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~ 141 (197)
++++..+...++.++|++++|+|++++. ++..+ ..|+..+... ++|+++|+||+|+.+... +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence 6778888888999999999999999986 78776 7888877664 899999999999965321 12 34
Q ss_pred HHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449 142 QGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175 (197)
Q Consensus 142 ~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~ 175 (197)
+...+++..+. +++++||+++.|++++++.+..
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence 45566667777 8999999999999999987653
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-13 Score=104.76 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=97.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------ccccCcC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-------LRPLSYR 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~ 76 (197)
...+|+++|.|+||||||+|++.+... ..+++.|+.+.....+.+++ .+++++|+||.-.-.. .....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999997553 35667777666666777777 5677999999532211 1112356
Q ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449 77 GADVFILAFSLISKASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP 153 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.+|++++|+|.+++..... .+...+... ..+.|.+++.||.|...... .........+.++...+...+..
T Consensus 149 ~ad~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l- 222 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI- 222 (376)
T ss_dssp HCSEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC-
T ss_pred hcCccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc-
Confidence 7999999999998743322 222333332 24678889999999753211 01111222455666666655554
Q ss_pred ceEEeccCCCCCHHHHHH
Q 036449 154 AYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 154 ~~~~~sa~~~~~i~~l~~ 171 (197)
..-++-...+...+++.+
T Consensus 223 t~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 223 NSAEIAFRCDATVDDLID 240 (376)
T ss_dssp CSEEEEECSCCCHHHHHH
T ss_pred cCCCeeecccCCHHHHHH
Confidence 222333333444555444
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.51 E-value=1.4e-14 Score=118.65 Aligned_cols=158 Identities=20% Similarity=0.154 Sum_probs=96.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceee------------------------------------------
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFD------------------------------------------ 41 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~------------------------------------------ 41 (197)
...+|+|+|.+++|||||++++++..+ +....+++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 347999999999999999999998765 2221111100
Q ss_pred ---------eeeEEEEECCeEEEEEEEeCCCccc-------------cccccccCc-CCCcEEEEEEeCCCchhHHHHHH
Q 036449 42 ---------NFSANVVVNGSTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISKASYENVSK 98 (197)
Q Consensus 42 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 98 (197)
.....+... ....+.++||||... +..+...++ ..+|++++|+|++......+. .
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 000001111 112477999999533 112222233 578999999999876443333 2
Q ss_pred HHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH--HHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 99 KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE--LRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 99 ~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.+...+... +.|+++|+||+|+..... ........ +....+..+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 445555544 789999999999975432 11111100 0001132356789999999999999998873
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.51 E-value=7.6e-15 Score=119.39 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh--CCCCCC----CCCceee----------ee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS--NTFPTD----YVPTVFD----------NF-SANVVVNGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~--~~~~~~----~~~~~~~----------~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (197)
.-||+++|+.++|||||..+++. +..... ...+..+ .. .....+.-..+.++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45799999999999999999873 222110 0000000 00 1111122233668899999999999
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
......++-+|++|+|+|+..+-..+.. ..+...... ++|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEecccccc
Confidence 8888889999999999999987555443 333444444 689999999999864
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=9e-13 Score=108.56 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=78.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC--------CCCCC--CCCceeeee---------eEEEEEC-----CeEEEEEEEe
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN--------TFPTD--YVPTVFDNF---------SANVVVN-----GSTVNLGLWD 60 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~--------~~~~~--~~~~~~~~~---------~~~~~~~-----~~~~~~~i~D 60 (197)
+.=||+++|+.++|||||..+++.. ..... +.-+..... ...+.+. ...+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3457999999999999999888631 11111 000000111 1122222 1358899999
Q ss_pred CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~ 124 (197)
||||-+|.......++-+|++|+|+|+..+-..+.. .-|.. .... ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~-a~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQ-ANKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHH--TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHH-HHHc--CCCeEEEEccccccC
Confidence 999999998888888899999999999988666554 34444 3444 699999999999753
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1.1e-13 Score=104.57 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.++||||...-. ......+|.+++++|...++..+.+ .. .+. ..+.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence 567799999964321 1234689999999998755332211 11 111 235577779999754221
Q ss_pred CCCcccHHHHHHHHHHh---C------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 134 GAVPISTAQGEELRKLI---G------APAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
......+.+.... . .++++.+||+++.|++++++.|.+...
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1222233333321 1 237899999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=8.5e-14 Score=96.55 Aligned_cols=108 Identities=9% Similarity=-0.013 Sum_probs=67.7
Q ss_pred CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhh--CCCCCEEEEeeCC-cccCCcccccCCCC
Q 036449 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHY--APGVPIILVGTKL-DLRDDKQFFIDHPG 134 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~--~~~~~~ivv~nK~-D~~~~~~~~~~~~~ 134 (197)
.+||+.++.+|..|+.++|++|||+|.+|.+..+ ....+ ...+... ..+.|++|++||. |+...
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------- 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence 3488999999999999999999999999986554 32333 3333332 2589999999995 66432
Q ss_pred CCcccHHHHHH---HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 135 AVPISTAQGEE---LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
.+..+..+ +....+.-.+..|||++|+|+.+.++||.+.+..++
T Consensus 179 ---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 179 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred ---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 22222221 111111114677999999999999999998775543
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=97.95 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=48.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 68 (197)
..++|+++|.+|+|||||++++.+..+.. +++.++.......+.+.+. ...+++||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34789999999999999999999875532 2222332222223333321 2358899999987644
Q ss_pred c-------ccccCcCCCcEEEEEEeCCCchh
Q 036449 69 R-------LRPLSYRGADVFILAFSLISKAS 92 (197)
Q Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s 92 (197)
+ .+..+++.+|++++|+|.++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 33445778999999999986443
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.25 E-value=3.1e-12 Score=92.93 Aligned_cols=108 Identities=9% Similarity=-0.028 Sum_probs=72.5
Q ss_pred CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-CcccCCcccccCCCC
Q 036449 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK---WIPELKHY--APGVPIILVGTK-LDLRDDKQFFIDHPG 134 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~i~~~--~~~~~~ivv~nK-~D~~~~~~~~~~~~~ 134 (197)
.+||+.++.+|..|+.++|++|||+|.+|.+.++ ...+ +...+... ..+.|++|++|| .|+...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 4688999999999999999999999999987654 2232 22444332 358999999996 577542
Q ss_pred CCcccHHHHHH---HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449 135 AVPISTAQGEE---LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181 (197)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 181 (197)
.+..+..+ +....+.-.+..|||.+|+|+.+.++||.+.+..++
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 22222211 111111114677999999999999999999886543
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=5.5e-10 Score=85.57 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=56.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 67 (197)
+..+|.++|.+|+|||||++.+.+... ..+++.++.......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 347899999999999999999998654 233444443333334444431 135789999995432
Q ss_pred cc-------ccccCcCCCcEEEEEEeCCC
Q 036449 68 NR-------LRPLSYRGADVFILAFSLIS 89 (197)
Q Consensus 68 ~~-------~~~~~~~~~~~~i~v~d~~~ 89 (197)
.+ .....+..+|++++|+|..+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22234578999999999864
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=1.7e-10 Score=88.14 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=74.4
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
..++|++....+.+.++++++|+|++++. ..|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 45788888888888999999999999853 45666666666689999999999996532 11222
Q ss_pred H----HHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHH
Q 036449 143 G----EELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVV 177 (197)
Q Consensus 143 ~----~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~ 177 (197)
. ..+++..+.. +++.+||++|.|++++++.|.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2 3335556652 689999999999999999998754
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=5.3e-10 Score=85.41 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=73.1
Q ss_pred CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
.+++|++....+...++++++|+|++++.+ .|...+.....+.|+++|+||+|+.+... ......+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-------~~~~~~~~ 123 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-------KYPKLLRW 123 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-------CHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-------CHHHHHHH
Confidence 478899888888889999999999999863 44444555455789999999999975421 00011122
Q ss_pred HHHHHHHhCC--CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449 143 GEELRKLIGA--PAYIECSSKTQQNVKAVFDAAIRVVL 178 (197)
Q Consensus 143 ~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~ 178 (197)
...+++..+. ..++.+||++|.|++++++.+.+...
T Consensus 124 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 2333555565 26899999999999999999987653
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.96 E-value=1.2e-08 Score=74.69 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=63.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--------CCCceeeeeeEEEEECCe--EEEEEEEeCCCccccc-------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--------YVPTVFDNFSANVVVNGS--TVNLGLWDTAGQEDYN------- 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~------- 68 (197)
.++++++|++|+|||||++.+.+...+.. ..+.........+..... ...++++|++|--...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999886432211 000000001111111211 1357899999831100
Q ss_pred ---------------------cccccCcCCCcEEEEEEeCC-CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 69 ---------------------RLRPLSYRGADVFILAFSLI-SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 69 ---------------------~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
......+..+++.++++|-. .+.+..+. .++..+... .++++|.+|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~~---~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSKV---VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHTT---SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHhc---CcEEEEEeccccCCH
Confidence 00111233468889999864 44333332 445555443 899999999998653
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=2.5e-08 Score=77.00 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=61.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--ceeeee-eEEEEEC--CeEEEEEEEeCCCccccc------------
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP--TVFDNF-SANVVVN--GSTVNLGLWDTAGQEDYN------------ 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~i~D~~G~~~~~------------ 68 (197)
.++++++|++|+|||||++.+.+..+...... ...... ...+... +....+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 36799999999999999999987654321111 011111 1122222 222367899999843210
Q ss_pred -------------cccc--cCcCCC--cE-EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 69 -------------RLRP--LSYRGA--DV-FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 69 -------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
.... .....+ |+ ++++.|...+.+..++ .++..+. .+.|+|+|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 0000 012233 33 5566676655444443 3444443 47899999999998653
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=1.4e-10 Score=88.53 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC------CC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----cc---
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN------TF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL----RP--- 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~--- 72 (197)
.+|+++|.+|+|||||+|++.+. .. ....+.++.. .....++.. +.++||||....... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999875 12 1122222211 112223322 679999995322211 11
Q ss_pred -cC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449 73 -LS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL 149 (197)
Q Consensus 73 -~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+ ....+.++++++......+..+ ..+..+.. .+.|+++++||.|..+... .......+.+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~ 302 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ 302 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred HHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence 11 1567899999987432111111 11111222 3689999999999976543 12233455566
Q ss_pred hCCCceEEeccCCCCC
Q 036449 150 IGAPAYIECSSKTQQN 165 (197)
Q Consensus 150 ~~~~~~~~~sa~~~~~ 165 (197)
.+. .+.+.++.+.++
T Consensus 303 ~g~-~l~p~~~~~~~~ 317 (369)
T 3ec1_A 303 LGE-LLSPPSKRYAAE 317 (369)
T ss_dssp BTT-TBCSSCGGGTTT
T ss_pred cCC-ccCCCCchhhhh
Confidence 665 565556554433
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.88 E-value=1e-09 Score=86.67 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=83.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh------CCC----CCCCCCcee-------eee-eEEEE-----------------
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS------NTF----PTDYVPTVF-------DNF-SANVV----------------- 48 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~------~~~----~~~~~~~~~-------~~~-~~~~~----------------- 48 (197)
.+...|+++|.+||||||+++++.. ... .+.+.+... ... ...+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988872 211 011111100 000 00000
Q ss_pred ECCeEEEEEEEeCCCcccccc-ccc---cC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCc
Q 036449 49 VNGSTVNLGLWDTAGQEDYNR-LRP---LS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLD 121 (197)
Q Consensus 49 ~~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~D 121 (197)
.....+.+.|+||||...... ++. .. ...+|.+++|+|.+........ ...+... .|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~~---~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKDK---VDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHHH---HCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHhh---cCceEEEEeCCc
Confidence 000225677999999653211 110 00 1268999999999876542222 2233322 564 88999999
Q ss_pred ccCCcccccCCCCCCcccHHHHHHHHHHhCC-----------------CceEEeccCCCCC-HHHHHHHHHHH
Q 036449 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGA-----------------PAYIECSSKTQQN-VKAVFDAAIRV 176 (197)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~-i~~l~~~i~~~ 176 (197)
...... .+.......+. .+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 11122233333 1223478999988 99999998766
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=7.2e-08 Score=74.42 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=85.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eee--eeEEEEECCeEEEEEEEeCCCccccc-----cccccCcCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDN--FSANVVVNGSTVNLGLWDTAGQEDYN-----RLRPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~ 77 (197)
...++++|++|+|||||++.+.+......-..+. +.. ....+......-.+.+||++|..... .+....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3579999999999999999998743221111111 000 00111111111146799999853211 111112333
Q ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHH----HHhC
Q 036449 78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELR----KLIG 151 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~ 151 (197)
.+.+++ ++...++. +.+ .+...+... +.|+++|.||.|+.--+++. .+.. ....-.+..+++. ...+
T Consensus 149 ~~~~~~-lS~G~~~k-qrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~-~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFKK-NDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCCH-HHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCccH-HHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 455554 66653221 111 233444443 68999999999974211100 0000 0111122233332 1222
Q ss_pred --CCceEEecc--CCCCCHHHHHHHHHHHHcCC
Q 036449 152 --APAYIECSS--KTQQNVKAVFDAAIRVVLQP 180 (197)
Q Consensus 152 --~~~~~~~sa--~~~~~i~~l~~~i~~~~~~~ 180 (197)
....+.+|+ .++.|++++.+.+.+.+...
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 235788999 55667999999999877554
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=2.4e-10 Score=87.22 Aligned_cols=111 Identities=10% Similarity=0.095 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----c--
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFP--------TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----P-- 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~-- 72 (197)
.+|+++|.+|+|||||+|++.+.... ...+.++.. .....++.. +.++||||......+. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999875311 111222211 112223322 6799999963322111 0
Q ss_pred ----cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449 73 ----LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 73 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~ 126 (197)
......+.+++++|.........+ ..+..+.. .+.|+++++||.|..+..
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence 013457788888886322111111 11122222 268999999999997654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=4.7e-09 Score=77.28 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=68.1
Q ss_pred EEeCCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHH--HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC
Q 036449 58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN--VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG 134 (197)
Q Consensus 58 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 134 (197)
+-..|||. .........+..+|+++.|+|+.++.+... + ..|+ .+.|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-------~~kp~ilVlNK~DL~~~~-------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-------KNKPRIMLLNKADKADAA-------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-------SSSCEEEEEECGGGSCHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-------CCCCEEEEEECcccCCHH--------
Confidence 44678885 334455557889999999999999877642 3 3332 478999999999996521
Q ss_pred CCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449 135 AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~ 179 (197)
..+...++.+..+. +++.+||+++.|++++++.+.+.+..
T Consensus 67 ----~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 ----VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ----HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence 11222334444566 89999999999999999988877653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=5.8e-08 Score=71.46 Aligned_cols=57 Identities=26% Similarity=0.298 Sum_probs=35.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 65 (197)
.+.++|+++|.+|+|||||+|++.+.... ...+.++... ..+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 35689999999999999999999976532 2222222111 1222332 36799999963
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=4e-08 Score=71.53 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQED 66 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~ 66 (197)
++++++|.+|+|||||++++.+...... .++.+.+.. ..+..+. .+++|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5899999999999999999997664221 111111111 1122222 467999999753
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=1.7e-07 Score=75.33 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=39.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-----CCeEEEEEEEeCCCccc
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----NGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~ 66 (197)
.+.++|+|+|.+|+|||||+|++.+....-...+++.........+ ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4678999999999999999999998653212222221111111111 11224567999999654
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.38 E-value=2e-07 Score=72.50 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=38.7
Q ss_pred EEEEEEeCCCccccc-----cc-cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCcccC
Q 036449 54 VNLGLWDTAGQEDYN-----RL-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-P-IILVGTKLDLRD 124 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~-----~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-~-~ivv~nK~D~~~ 124 (197)
+.+.++||||..... .+ ....+..+|.+++|+|.+.... . ......+. +.. | ..+|.||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 456799999964321 11 0112336899999999876642 2 11222222 235 5 789999999854
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=1.5e-07 Score=68.51 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=60.5
Q ss_pred CCCcccc-ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449 61 TAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS 139 (197)
Q Consensus 61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~ 139 (197)
.|||... .......+.++|+++.|+|+.++.+.....-.++ +.|.++|+||+|+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll--------~k~~iivlNK~DL~~~~~------------ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFS--------RKETIILLNKVDIADEKT------------ 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCT--------TSEEEEEEECGGGSCHHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhc--------CCCcEEEEECccCCCHHH------------
Confidence 5777532 2344556789999999999998876643200121 689999999999965211
Q ss_pred HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449 140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176 (197)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~ 176 (197)
.+....+.+..+. ++ .+||+++.|++++++.+.+.
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 1222334445566 67 99999999999998876543
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.28 E-value=1.1e-06 Score=68.16 Aligned_cols=86 Identities=17% Similarity=0.070 Sum_probs=48.8
Q ss_pred EEEEEEeCCCcccccc-----ccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcc
Q 036449 54 VNLGLWDTAGQEDYNR-----LRP-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 54 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~ 127 (197)
+.+.++||||-..... +.. .....+|.+++|+|.+........ ...+... -.+..+|.||.|.....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSSH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCcccc-
Confidence 5577999999432110 100 112357899999999876443222 2333333 23567899999986532
Q ss_pred cccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
-.+.......+. |+..++.
T Consensus 256 -------------G~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 256 -------------GGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp -------------HHHHHHHHTTCC-CEEEEEC
T ss_pred -------------cHHHHHHHHHCC-CEEEEEc
Confidence 223344455666 6655554
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=9.7e-07 Score=65.51 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=61.4
Q ss_pred cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc--cHHHHHHH
Q 036449 69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--STAQGEEL 146 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 146 (197)
.+....+.++|.+++|+|+.++.........++...... ++|.++|+||+|+.+... . ..+...++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~ 145 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAED 145 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHH
Confidence 344456889999999999997754433335665554444 789999999999976421 0 01222334
Q ss_pred HHHhCCCceEEeccCCCCCHHHHHHH
Q 036449 147 RKLIGAPAYIECSSKTQQNVKAVFDA 172 (197)
Q Consensus 147 ~~~~~~~~~~~~sa~~~~~i~~l~~~ 172 (197)
.+..+. +.+.+||.++.|+++++..
T Consensus 146 y~~~g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 146 YRNIGY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred HHhCCC-eEEEEecCCCCCHHHHHhh
Confidence 344576 8899999998887776554
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.10 E-value=3.1e-06 Score=68.73 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
..|+|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999998764
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.99 E-value=2.5e-06 Score=63.19 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=51.9
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccC
Q 036449 54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRD 124 (197)
Q Consensus 54 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~ 124 (197)
+.+.++||||... ... +.. .....+|.+++|+|.+...... .....+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 4577999999755 211 110 1234689999999987542221 12222322 355 678999999853
Q ss_pred CcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHH
Q 036449 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 167 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 167 (197)
. ...+.......+. |+..++ .|++++
T Consensus 254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 K--------------GGGALSAVAATGA-TIKFIG--TGEKID 279 (297)
T ss_dssp T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTT
T ss_pred c--------------hHHHHHHHHHHCc-CEEEEe--CCCChh
Confidence 2 1234456667776 666655 455554
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=2.5e-07 Score=72.90 Aligned_cols=108 Identities=16% Similarity=0.006 Sum_probs=61.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccc--cccc--------cc
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDY--NRLR--------PL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~~ 73 (197)
..+.|+++|.+|+||||+.+++...-... ..++...... ......+......+||..|.+.+ +..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998887532111 1111110000 00000111123458999987432 2222 34
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVG 117 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~ 117 (197)
++...++.++|+|.++. +.+.. ..|...+... +.+++.+-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 45557788999999988 44444 5777766665 34454443
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.94 E-value=8.5e-05 Score=56.24 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=55.7
Q ss_pred CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHHHhCC
Q 036449 74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRKLIGA 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 152 (197)
.+.++|.+++|... ++.........++...... +.|.++|+||+|+.+... . ..+.........|.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~ 193 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY 193 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC
Confidence 46789999988665 4543333335665555545 788999999999965321 0 01112222334566
Q ss_pred CceEEeccCCCCCHHHHHHHH
Q 036449 153 PAYIECSSKTQQNVKAVFDAA 173 (197)
Q Consensus 153 ~~~~~~sa~~~~~i~~l~~~i 173 (197)
+.+.+||.++.|++++...+
T Consensus 194 -~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 194 -RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp -CEEECBTTTTBTHHHHHHHH
T ss_pred -cEEEEecCCCcCHHHHHHhc
Confidence 78999999999999887653
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=1.3e-05 Score=62.15 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=49.4
Q ss_pred EEEEEEeCCCccc--cc-----cccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449 54 VNLGLWDTAGQED--YN-----RLRP-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 54 ~~~~i~D~~G~~~--~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~ 125 (197)
+.+.++||||... .. .+.. .....++.+++|+|.+..+..... ...+... -.+..+|.||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence 4566999999533 11 0000 011246899999999876433222 2333333 2467899999998643
Q ss_pred cccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 160 (197)
- -.+.......+. |+..++.
T Consensus 254 ~--------------G~als~~~~~g~-Pi~fig~ 273 (433)
T 3kl4_A 254 G--------------GGALSAVVATGA-TIKFIGT 273 (433)
T ss_dssp H--------------HHHHHHHHHHTC-EEEEEEC
T ss_pred c--------------hHHHHHHHHHCC-CEEEEEC
Confidence 2 223445555676 7666664
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.71 E-value=7e-05 Score=58.37 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+..-|.|+|++++|||+|+|.+++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3566799999999999999999985
No 235
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.60 E-value=4e-05 Score=53.61 Aligned_cols=28 Identities=32% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|...+...|+++|+.|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6666677899999999999999987765
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=4.6e-05 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999877643
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.9e-05 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=6.5e-05 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..+.--|+++|++|+|||||++.+...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334446899999999999999998854
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.48 E-value=7.5e-05 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+..+.-.|+++|++||||||+++.+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444456799999999999999988764
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.48 E-value=4.1e-05 Score=56.83 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.++++|++|||||||++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999864
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.48 E-value=6.6e-05 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988875
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=8.5e-05 Score=51.63 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
|+-.+...|+++|++||||||+++.+....
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444555679999999999999999887653
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=9.8e-05 Score=50.57 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
|+..+..+|+++|.+||||||+.+.+...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55666788999999999999999877654
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.44 E-value=0.00044 Score=51.27 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
.++++|++|+|||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.42 E-value=0.00011 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
--|+++|++|||||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999998865
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.40 E-value=9.8e-05 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+++|++|||||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998754
No 247
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.38 E-value=0.00014 Score=49.80 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+.+....|++.|.+||||||+.+.+..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7777667899999999999999987764
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=0.00011 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988753
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.35 E-value=0.00012 Score=51.78 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999988764
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.33 E-value=0.00013 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-|+++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999988764
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.32 E-value=0.00011 Score=49.77 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.31 E-value=0.00021 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.-.|+++|++||||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988764
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.30 E-value=0.00014 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999988764
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.29 E-value=0.00015 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.00019 Score=49.28 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.|+++|++|||||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999998775
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.25 E-value=0.00018 Score=50.31 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=21.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+-.+...|++.|.+||||||+.+.+..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4444567899999999999999988764
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.25 E-value=0.00021 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|++|||||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999987764
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.22 E-value=0.00019 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-|+++|++||||||+++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999988753
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.00023 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3799999999999999988764
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00027 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999998887653
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.14 E-value=0.00028 Score=47.43 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 036449 7 IKCVTVGDGAVGKTCLLISY 26 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~ 26 (197)
+.|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00028 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..|+++|++||||||+.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999888653
No 263
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.0004 Score=48.11 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 3 ASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999988764
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.00031 Score=47.19 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|++.|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 265
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.12 E-value=0.00029 Score=49.33 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988753
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.12 E-value=0.00029 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 267
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.11 E-value=0.00028 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=20.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
++...|++.|.+||||||+.+.+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999987763
No 268
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.10 E-value=0.00032 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00032 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 270
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00044 Score=47.88 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...+.|++.|.+||||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999988764
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.08 E-value=0.00037 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~ 27 (197)
...|+++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998887
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.0004 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|+++|++||||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999987764
No 273
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.07 E-value=0.0003 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.06 E-value=0.0003 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987754
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.00034 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|+.|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999977664
No 276
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.05 E-value=0.00038 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999988764
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.05 E-value=0.00041 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999988765
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.05 E-value=0.00036 Score=50.62 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999988765
No 279
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.05 E-value=0.00037 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988765
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.04 E-value=0.00037 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|++|+|||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00054 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+...|++.|.+||||||+.+.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988764
No 282
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.03 E-value=0.00044 Score=48.33 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|+++|+|||||+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999987764
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.03 E-value=0.00049 Score=46.91 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988764
No 284
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.02 E-value=0.00041 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.02 E-value=0.00038 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988764
No 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.02 E-value=0.00038 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.01 E-value=0.0004 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.0004 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..|++.|.+||||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999888763
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00054 Score=49.10 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+.++|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988864
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00041 Score=48.07 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|+++|.+||||||+.+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988764
No 291
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00048 Score=49.60 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=21.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+..+.+.|++.|.+||||||+.+.|..
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3445668899999999999999987765
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.00 E-value=0.00051 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|++.|.+|+||||+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999988764
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.99 E-value=0.00053 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|.++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999977754
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.99 E-value=0.00045 Score=51.18 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999987764
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.99 E-value=0.00059 Score=47.44 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.99 E-value=0.0004 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999988864
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.98 E-value=0.00054 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.98 E-value=0.00047 Score=49.42 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988764
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.98 E-value=0.00047 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 300
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.98 E-value=0.00059 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+..-|++.|++||||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.97 E-value=0.00043 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988765
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00051 Score=46.99 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|++.|.+||||||+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987764
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.97 E-value=0.00056 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987754
No 304
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.97 E-value=0.00051 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988765
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00056 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988754
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.96 E-value=0.00046 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988764
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.96 E-value=0.00049 Score=48.20 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999987754
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.95 E-value=0.00052 Score=47.60 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+|+++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999988876
No 309
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.94 E-value=0.00048 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00051 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.93 E-value=0.00054 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999988764
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.93 E-value=0.00046 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888754
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00052 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 314
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.92 E-value=0.00052 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.92 E-value=0.00039 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.024 Sum_probs=16.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+...|++.|.+||||||+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988864
No 316
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00059 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999987754
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.91 E-value=0.00077 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+..-|+++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3446799999999999999987765
No 318
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.91 E-value=0.00053 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988765
No 319
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.91 E-value=0.0008 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~ 27 (197)
.+...|+|+|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999997654
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.90 E-value=0.00058 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988875
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.89 E-value=0.00082 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.021 Sum_probs=20.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+.+-|.++|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999977653
No 322
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.89 E-value=0.00064 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++.|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987764
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.89 E-value=0.00027 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.|+++|++|+|||||++.+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887753
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.89 E-value=0.00084 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=20.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+...|.++|++|+||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999987764
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.89 E-value=0.00055 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999987754
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.89 E-value=0.00064 Score=46.31 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|+++|++||||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988754
No 327
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.89 E-value=0.00075 Score=47.35 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+.|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988865
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00076 Score=46.17 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987754
No 329
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.88 E-value=0.00064 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 330
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.87 E-value=0.00074 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47899999999999999998654
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.87 E-value=0.00061 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 036449 8 KCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~ 27 (197)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998776
No 332
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.00054 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999987765
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.87 E-value=0.00079 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987765
No 334
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.87 E-value=0.0006 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988765
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.86 E-value=0.00041 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=15.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh-hC
Q 036449 7 IKCVTVGDGAVGKTCLLISYT-SN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~-~~ 29 (197)
--|+++|++|||||||++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999988 53
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.00073 Score=45.21 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988765
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00078 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.|.++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 338
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.84 E-value=0.00064 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.84 E-value=0.00083 Score=46.74 Aligned_cols=24 Identities=17% Similarity=-0.074 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.83 E-value=0.00075 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999987754
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.83 E-value=0.00089 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...+.++|.+|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988775
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.82 E-value=0.00099 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+...|+++|++|+||||+.+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999888764
No 343
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.82 E-value=0.00083 Score=47.41 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987754
No 344
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.81 E-value=0.0008 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887653
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.80 E-value=0.00069 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.80 E-value=0.00098 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
..|.++|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998876
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.79 E-value=0.00074 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.79 E-value=0.00096 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+...|+++|.+||||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999888765
No 349
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.79 E-value=0.0011 Score=43.49 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999887653
No 350
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0022 Score=48.33 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999987765
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.78 E-value=0.00068 Score=51.58 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988764
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.00078 Score=51.09 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|+++|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988765
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.76 E-value=0.00053 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999888764
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.75 E-value=0.00084 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~ 27 (197)
.-.|+++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3468999999999999998765
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.75 E-value=0.00064 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||+|++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999887753
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.0014 Score=44.65 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999987754
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.72 E-value=0.0012 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+..+|+++|.+||||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999987764
No 358
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.0011 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987764
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.70 E-value=0.0011 Score=45.26 Aligned_cols=21 Identities=19% Similarity=0.011 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 360
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.00087 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 361
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.69 E-value=0.00089 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
++++|++|+|||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7899999999999999888753
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.68 E-value=0.0012 Score=45.31 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988765
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.68 E-value=0.001 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.67 E-value=0.0011 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 789999999999999888764
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.67 E-value=0.0013 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.66 E-value=0.0011 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999988764
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.65 E-value=0.0011 Score=50.53 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|+++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988775
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.65 E-value=0.00091 Score=46.00 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.65 E-value=0.0014 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|.++|++|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988765
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.65 E-value=0.00095 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998874
No 371
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.0011 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3789999999999999988764
No 372
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.64 E-value=0.0011 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999887653
No 373
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999988763
No 374
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.63 E-value=0.0014 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
++.+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999988763
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.63 E-value=0.00041 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999988764
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.0012 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-|+++|++|||||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988754
No 377
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0012 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999988764
No 378
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.63 E-value=0.001 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988753
No 379
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.62 E-value=0.0012 Score=47.36 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.61 E-value=0.0018 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.--|+++|++|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999977653
No 381
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.61 E-value=0.00072 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+.. .+-|.+.|++||||||+.+.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 6654 45699999999999999977653
No 382
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.59 E-value=0.0013 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3789999999999999988764
No 383
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.59 E-value=0.0013 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 789999999999999988765
No 384
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.58 E-value=0.0014 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+..-|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999888764
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0021 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
--++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999977653
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.57 E-value=0.0014 Score=43.97 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987764
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.56 E-value=0.0016 Score=46.36 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+.+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987763
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.56 E-value=0.0019 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999987765
No 389
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.55 E-value=0.0013 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-|+|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999988763
No 390
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.53 E-value=0.0015 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988754
No 391
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0017 Score=45.70 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 036449 9 CVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~ 28 (197)
|+++|+|||||+|....+..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 66789999999999977764
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0016 Score=44.23 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999987764
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0025 Score=45.23 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 446799999999999999988765
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.48 E-value=0.002 Score=43.15 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|++.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987754
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.47 E-value=0.0014 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999987764
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.47 E-value=0.0018 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
++++|++|+|||||++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988764
No 397
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.46 E-value=0.0011 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 3789999999999999988764
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.46 E-value=0.0018 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988774
No 399
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.44 E-value=0.0067 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~ 27 (197)
.+..-|.|+|+.++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456778899999999999999654
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.44 E-value=0.0016 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.++++|+.||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999988643
No 401
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.43 E-value=0.0017 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999888753
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.41 E-value=0.0019 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999888753
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.003 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|+++|+.||||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999977653
No 404
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.39 E-value=0.0023 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987764
No 405
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.38 E-value=0.0028 Score=47.28 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=20.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|+..+ ..|+++|++|||||||...+..
T Consensus 1 ~~~m~-~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLP-PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence 55533 4699999999999999988765
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.38 E-value=0.0029 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+...|+++|.+|+||||+.+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987654
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0018 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.++++|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999887754
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0025 Score=43.97 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999877653
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0021 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.046 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|+++|++|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999987754
No 410
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.35 E-value=0.0023 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|++.|++|+|||+|++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999988865
No 411
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.34 E-value=0.0031 Score=49.71 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
--|+++|+.|+|||||++.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHH
Confidence 468999999999999997765
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.31 E-value=0.0011 Score=50.22 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999988765
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.28 E-value=0.0033 Score=46.25 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.27 E-value=0.003 Score=47.40 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999988765
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.27 E-value=0.0024 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.--++++|..|+|||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4467899999999999999998653
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.26 E-value=0.0034 Score=43.28 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+.|.+.|..||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999887653
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.24 E-value=0.0024 Score=46.93 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999877643
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.24 E-value=0.0029 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.003 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988874
No 420
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.22 E-value=0.004 Score=43.98 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=21.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 1 MSASRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
|...+..-|++.|.+|+||||+++.+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445667899999999999999977653
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.18 E-value=0.0036 Score=41.25 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 036449 9 CVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~ 27 (197)
.+++|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999998764
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.14 E-value=0.0033 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999888764
No 423
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.14 E-value=0.0035 Score=43.35 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
..|+++|++|+|||+|...+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999988653
No 424
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.14 E-value=0.0041 Score=45.85 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~ 27 (197)
....+++.|++|+|||++.+.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999997554
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.14 E-value=0.0034 Score=44.15 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 426
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.13 E-value=0.0047 Score=42.67 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.|.+.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999987754
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.10 E-value=0.0034 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|+++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999988875
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.08 E-value=0.005 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...-|+++|.+||||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998753
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.07 E-value=0.0036 Score=49.28 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999987764
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.06 E-value=0.0048 Score=43.78 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+...|.++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999987764
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.05 E-value=0.004 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 432
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0045 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999988754
No 433
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.00 E-value=0.0038 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999988764
No 434
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.00 E-value=0.0052 Score=41.47 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
-|++.|++|+||||+...+....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 48999999999999999988753
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.00 E-value=0.0041 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.99 E-value=0.0045 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.|++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988865
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.97 E-value=0.0043 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~ 30 (197)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999998888753
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.94 E-value=0.0044 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 439
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.92 E-value=0.0078 Score=43.60 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 4 SRFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...-.+++.|++|+|||++.+.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999888763
No 440
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.92 E-value=0.0039 Score=43.32 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.+++.|++|+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999877754
No 441
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.92 E-value=0.0074 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~ 27 (197)
...+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999996543
No 442
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.90 E-value=0.0054 Score=45.13 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..-+++.|++|+|||+|.+.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346777899999999999887653
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.90 E-value=0.0047 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999988765
No 444
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.89 E-value=0.0043 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
-.|+++|+.|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999996654
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.89 E-value=0.0049 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999988764
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.87 E-value=0.0038 Score=45.11 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
+...|++.|..||||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999777653
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.0048 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++++|+.|+|||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988864
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.86 E-value=0.0048 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999977764
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0049 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4899999999999999988764
No 450
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.85 E-value=0.0053 Score=46.71 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 036449 9 CVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~ 27 (197)
.+++|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5599999999999998875
No 451
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.84 E-value=0.0066 Score=43.00 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.++..++|++||||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 358899999999999999977754
No 452
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.82 E-value=0.004 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 453
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.0084 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 036449 7 IKCVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~ 27 (197)
--|+++|++|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 458999999999999996654
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.82 E-value=0.008 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-|+|+|++|||||+|...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999888653
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.81 E-value=0.0043 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999888764
No 456
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.81 E-value=0.0079 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999877653
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.0068 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...|++.|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999887653
No 458
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.0053 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-.+++.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988775
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.74 E-value=0.0062 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4899999999999999988764
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.006 Score=43.29 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999866653
No 461
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.73 E-value=0.0069 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.+++.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888754
No 462
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.71 E-value=0.0066 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999988765
No 463
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.71 E-value=0.0037 Score=50.56 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999766653
No 464
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.71 E-value=0.0072 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-|+|+|++|||||||...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999888754
No 465
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.70 E-value=0.0033 Score=40.99 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999777654
No 466
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.0064 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.66 E-value=0.0048 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999877654
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.62 E-value=0.0077 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.62 E-value=0.01 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-|+|+|++|||||||...+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999888753
No 470
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.0074 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999877653
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.57 E-value=0.0081 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.56 E-value=0.0083 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.+.|.+.|.+|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999977754
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.52 E-value=0.0092 Score=41.41 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 036449 9 CVTVGDGAVGKTCLLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~ 27 (197)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999997764
No 474
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.52 E-value=0.0083 Score=40.80 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhC
Q 036449 9 CVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~ 29 (197)
|+|+|.+|||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998755
No 475
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.50 E-value=0.0084 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999888764
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.50 E-value=0.0094 Score=41.75 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
..-|++.|.+|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999987753
No 477
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.50 E-value=0.0087 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-++|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 478
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.49 E-value=0.0097 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999977664
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.47 E-value=0.0081 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888764
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.47 E-value=0.0095 Score=44.39 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.|++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999888653
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0088 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhCC
Q 036449 9 CVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~~~~~~ 30 (197)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999888643
No 482
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.44 E-value=0.01 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999988654
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0096 Score=45.12 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988765
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.42 E-value=0.0084 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhh
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~ 28 (197)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999977654
No 485
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.41 E-value=0.098 Score=38.74 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=25.4
Q ss_pred cEEEEEEeCCCchh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449 79 DVFILAFSLISKAS-YENVSKKWIPELKHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~ 122 (197)
..-++++|=-+.-+ -+.. ..++..+....++..+|+..|..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence 55666777655544 3222 4555555554446788888887664
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.0098 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999987764
No 487
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.37 E-value=0.0076 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.088 Sum_probs=17.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~ 28 (197)
+..-|++.|.+||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999977653
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.37 E-value=0.0043 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 036449 8 KCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~ 28 (197)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999988765
No 489
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.36 E-value=0.0091 Score=44.66 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~ 29 (197)
.++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999888753
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.36 E-value=0.01 Score=42.81 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
..|++.|++|+|||++.+.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 569999999999999998887653
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.33 E-value=0.012 Score=43.70 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~~ 30 (197)
.-|+++|++|+||||+...+....
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998753
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.33 E-value=0.01 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhhC
Q 036449 7 IKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~~ 29 (197)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999887653
No 493
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.30 E-value=0.012 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhCCC
Q 036449 8 KCVTVGDGAVGKTCLLISYTSNTF 31 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~~~~~~ 31 (197)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999986543
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.28 E-value=0.0066 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.|+++|.+|||||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 356999999999999999887653
No 495
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.27 E-value=0.016 Score=40.86 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.3
Q ss_pred CceeEEEEEcCCCCCHHHHHH
Q 036449 4 SRFIKCVTVGDGAVGKTCLLI 24 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~ 24 (197)
...++|++.|++|+||||++-
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHH
Confidence 346899999999999999963
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.26 E-value=0.0096 Score=47.52 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 036449 8 KCVTVGDGAVGKTCLLISY 26 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~~ 26 (197)
-++++|++|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999885
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.24 E-value=0.012 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999887653
No 498
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.21 E-value=0.011 Score=45.24 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 5 RFIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
...+++++|++|+|||++++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999887754
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.21 E-value=0.011 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhh
Q 036449 7 IKCVTVGDGAVGKTCLLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~~~~ 28 (197)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999987764
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.013 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449 6 FIKCVTVGDGAVGKTCLLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~~~~~ 29 (197)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988654
Done!