BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036451
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 75/259 (28%)
Query: 7 SSLVEKMKAETQDFFNLPIEKKNKYW--QRPGDIEGFGGTL------------------- 45
+ L+E++K ++FF+L +E+K KY Q G I+G+G L
Sbjct: 89 ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY 148
Query: 46 ------------------EIFLTEVECLSL---KMLDQMAKALRMDPNEMKE-------- 76
E +CL L K+ ++ L ++P+ +++
Sbjct: 149 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 208
Query: 77 -----MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL-------- 123
+NYYP C QP + + +H+D SALT L N + G+Q +GKWV
Sbjct: 209 LLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSI 267
Query: 124 ---------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDG-EFGPTPNLITPESPS 173
IL+NG Y +I H +N K R+S+A FC P D P P +++ ESP+
Sbjct: 268 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 327
Query: 174 LFKRINVVDHLK-ELFSIE 191
F H++ +LF E
Sbjct: 328 KFPPRTFAQHIEHKLFGKE 346
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 111/259 (42%), Gaps = 75/259 (28%)
Query: 7 SSLVEKMKAETQDFFNLPIEKKNKYW--QRPGDIEGFGGTL------------------- 45
+ L+E++K ++FF+L +E+K KY Q G I+G+G L
Sbjct: 88 ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY 147
Query: 46 ------------------EIFLTEVECLSL---KMLDQMAKALRMDPNEMKE-------- 76
E +CL L K+ ++ L ++P+ +++
Sbjct: 148 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 207
Query: 77 -----MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL-------- 123
+NYYP C QP + + +H+D SALT L N + G+Q +GKWV
Sbjct: 208 LLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSI 266
Query: 124 ---------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDG-EFGPTPNLITPESPS 173
IL+NG Y +I H +N K R+S+A FC P D P P +++ ESP+
Sbjct: 267 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPA 326
Query: 174 LFKRINVVDHLK-ELFSIE 191
F H++ +LF E
Sbjct: 327 KFPPRTFAQHIEHKLFGKE 345
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 109/259 (42%), Gaps = 75/259 (28%)
Query: 7 SSLVEKMKAETQDFFNLPIEKKNKYW--QRPGDIEGFGGTL------------------- 45
+ L E++K ++FF+L +E+K KY Q G I+G+G L
Sbjct: 89 ADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY 148
Query: 46 ------------------EIFLTEVECLSL---KMLDQMAKALRMDPNEMKE-------- 76
E +CL L K+ ++ L ++P+ +++
Sbjct: 149 PEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL 208
Query: 77 -----MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVL-------- 123
+NYYP C QP + + +H+D SALT L N + G+Q +GKWV
Sbjct: 209 LLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSI 267
Query: 124 ---------ILTNGIYCNIEHCATINSMKERLSFATFCNPKLDG-EFGPTPNLITPESPS 173
IL+NG Y +I H +N K R+S+A FC P D P P ++ ESP+
Sbjct: 268 VXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPA 327
Query: 174 LFKRINVVDHLK-ELFSIE 191
F H++ +LF E
Sbjct: 328 KFPPRTFAQHIEHKLFGKE 346
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 30/154 (19%)
Query: 48 FLTEVECLSLKMLDQMAKALRMDPNEMKEMNY-------------YPPCLQPNQVISLNS 94
F +E L+ ++LD + + L ++ +K Y YPPC +P+ + L +
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176
Query: 95 HSDASALTIRLQINEMNGIQTKKDGKWV-----------------LILTNGIYCNIEHCA 137
H+DA + + Q ++++G+Q KDG+W+ ++TNG Y ++ H
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRV 236
Query: 138 TINSMKERLSFATFCNPKLDGEFGPTPNLITPES 171
R S A+F NP D P P L+ E+
Sbjct: 237 IAQKDGARXSLASFYNPGSDAVIYPAPALVEKEA 270
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 33/173 (19%)
Query: 35 PGDIEGFGGTLEIFLTEVECLSLKMLDQMAKALRM----------DPNEMKEMNYYPPCL 84
P +I F + ++ K+L+ +A L++ D N + + +YPP
Sbjct: 121 PAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIP 180
Query: 85 QPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLI-----------------LTN 127
+ + +H D + +T+ L E +DG+W+ I LTN
Sbjct: 181 KDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTN 240
Query: 128 GIYCNIEHCATINSMKERLSFATFCNPKL-----DGEFGPTPNLITPESPSLF 175
+ + H +N ER + P D E N +T E+P +
Sbjct: 241 NVLPSTVH-RVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 30.4 bits (67), Expect = 0.72, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 40 GFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYYPP 82
G+G +F +E CL +D +A+ L MDP E++ N Y P
Sbjct: 534 GYGAPQSMFASE--CL----MDMLAEKLGMDPLELRYKNAYRP 570
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 40 GFGGTLEIFLTEVECLSLKMLDQMAKALRMDPNEMKEMNYY 80
G+G F +EV ++D++A+ L MDP E++ +N Y
Sbjct: 536 GYGAPESEFPSEV------LMDELAEKLGMDPFELRALNCY 570
>pdb|3AY5|A Chain A, Crystal Structure Of Hhm (Human Homologue Of Murine
Maternal Id-Like Molecule)
Length = 360
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 77 MNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKKDGKWVLILTNGIYCNIEHC 136
++ YPP + + +NS S L L+I + + + + + W+ +L N I+HC
Sbjct: 293 LSIYPPM--SHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINA----IDHC 346
Query: 137 ATINSMKE 144
+N +KE
Sbjct: 347 --MNRIKE 352
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 58 KMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKK 117
++LD++A +R+DP++ + + + + N+ S L +L + + + KK
Sbjct: 137 EILDEIA--IRVDPDDEETLLK----IAATSITGKNAESHKELLA-KLAVEAVKQVAEKK 189
Query: 118 DGKWVLILTN 127
DGK+V+ L N
Sbjct: 190 DGKYVVDLDN 199
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 58 KMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKK 117
++LD++A +R+DP++ + + + + N+ S L +L + + + KK
Sbjct: 137 EILDEIA--IRVDPDDEETLLK----IAATSITGKNAESHKELLA-KLAVEAVKQVAEKK 189
Query: 118 DGKWVLILTN 127
DGK+V+ L N
Sbjct: 190 DGKYVVDLDN 199
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 58 KMLDQMAKALRMDPNEMKEMNYYPPCLQPNQVISLNSHSDASALTIRLQINEMNGIQTKK 117
++LD++A +R+DP++ + + + + N+ S L +L + + + KK
Sbjct: 137 EILDEIA--IRVDPDDEETLLK----IAATSITGKNAESHKELLA-KLAVEAVKQVAEKK 189
Query: 118 DGKWVLILTN 127
DGK+V+ L N
Sbjct: 190 DGKYVVDLDN 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,850,704
Number of Sequences: 62578
Number of extensions: 223952
Number of successful extensions: 423
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 19
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)