Query 036452
Match_columns 244
No_of_seqs 222 out of 1663
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.2E-38 2.7E-43 268.4 3.4 158 20-177 1-185 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 9.5E-34 2.1E-38 205.2 3.8 74 21-94 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.6E-30 3.5E-35 191.0 4.2 74 21-94 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 5.2E-30 1.1E-34 175.7 4.0 59 21-79 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3E-29 6.5E-34 172.1 3.5 59 21-79 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1E-27 2.2E-32 159.4 -0.1 51 28-78 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 5E-21 1.1E-25 166.7 4.0 79 8-86 50-128 (338)
8 PF01486 K-box: K-box region; 99.8 1.8E-19 4E-24 136.8 11.3 92 101-192 9-100 (100)
9 COG5068 ARG80 Regulator of arg 99.5 2.4E-14 5.1E-19 130.3 3.3 68 19-86 80-147 (412)
10 PF06005 DUF904: Protein of un 94.5 0.37 8E-06 34.3 8.0 52 138-194 1-52 (72)
11 PRK15422 septal ring assembly 89.3 3.7 8.1E-05 29.6 7.8 43 138-185 1-43 (79)
12 PF10584 Proteasome_A_N: Prote 86.8 0.12 2.7E-06 28.5 -0.8 14 62-75 3-16 (23)
13 COG3074 Uncharacterized protei 85.8 9.8 0.00021 26.8 8.0 50 138-192 1-50 (79)
14 PF06156 DUF972: Protein of un 84.3 9.1 0.0002 29.3 8.1 51 140-195 7-57 (107)
15 cd07429 Cby_like Chibby, a nuc 83.9 1.8 4E-05 33.2 4.1 23 170-192 75-97 (108)
16 PF06698 DUF1192: Protein of u 83.8 2.9 6.2E-05 28.6 4.6 32 129-160 12-43 (59)
17 PRK13169 DNA replication intia 82.1 12 0.00025 28.9 7.9 50 140-194 7-56 (110)
18 PF01166 TSC22: TSC-22/dip/bun 81.7 3.8 8.2E-05 27.8 4.5 27 163-189 17-43 (59)
19 PF08317 Spc7: Spc7 kinetochor 81.7 11 0.00023 34.3 9.0 62 133-194 201-264 (325)
20 smart00787 Spc7 Spc7 kinetocho 80.9 12 0.00025 34.1 8.8 62 133-194 196-259 (312)
21 KOG4797 Transcriptional regula 78.9 12 0.00026 28.6 6.9 41 148-188 48-88 (123)
22 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.4 37 0.00081 26.6 9.4 44 148-192 87-130 (132)
23 PRK10884 SH3 domain-containing 74.2 49 0.0011 28.3 10.3 19 110-128 92-110 (206)
24 PF14662 CCDC155: Coiled-coil 74.0 54 0.0012 27.8 10.8 21 166-186 66-86 (193)
25 KOG1962 B-cell receptor-associ 68.8 39 0.00084 29.1 8.4 53 138-190 155-209 (216)
26 PRK10884 SH3 domain-containing 66.8 48 0.001 28.3 8.6 20 107-126 96-115 (206)
27 COG2433 Uncharacterized conser 66.5 73 0.0016 31.7 10.6 83 110-194 421-508 (652)
28 PRK04098 sec-independent trans 65.7 6.8 0.00015 32.1 3.1 30 61-92 14-43 (158)
29 COG4467 Regulator of replicati 62.6 45 0.00097 25.6 6.7 48 140-192 7-54 (114)
30 TIGR02449 conserved hypothetic 60.7 54 0.0012 22.8 8.0 46 142-192 1-46 (65)
31 PF10211 Ax_dynein_light: Axon 60.3 1E+02 0.0022 25.8 9.4 23 70-92 82-104 (189)
32 PF05529 Bap31: B-cell recepto 60.0 67 0.0014 26.6 8.3 54 141-194 125-188 (192)
33 PF10504 DUF2452: Protein of u 59.8 63 0.0014 26.5 7.6 44 139-182 28-74 (159)
34 cd00187 TOP4c DNA Topoisomeras 59.6 86 0.0019 30.0 9.8 26 63-91 302-327 (445)
35 PF07106 TBPIP: Tat binding pr 59.1 43 0.00093 27.2 6.8 29 137-165 108-136 (169)
36 PRK11637 AmiB activator; Provi 56.5 1.5E+02 0.0031 28.0 10.8 73 109-190 52-126 (428)
37 KOG4797 Transcriptional regula 55.3 24 0.00052 27.1 4.2 34 156-190 64-97 (123)
38 KOG4643 Uncharacterized coiled 53.6 44 0.00095 35.1 7.0 49 148-196 281-330 (1195)
39 PRK11637 AmiB activator; Provi 53.6 1.6E+02 0.0034 27.7 10.5 13 112-124 48-60 (428)
40 KOG0971 Microtubule-associated 52.4 2.8E+02 0.006 29.3 12.2 87 107-193 328-429 (1243)
41 PF07888 CALCOCO1: Calcium bin 52.2 2.4E+02 0.0052 27.8 11.5 25 167-191 213-237 (546)
42 PF14645 Chibby: Chibby family 51.8 25 0.00055 27.2 4.0 25 168-192 72-96 (116)
43 smart00338 BRLZ basic region l 50.4 76 0.0017 21.4 6.4 38 154-195 17-54 (65)
44 TIGR02338 gimC_beta prefoldin, 50.2 1.1E+02 0.0023 23.1 10.7 46 146-192 61-106 (110)
45 TIGR03752 conj_TIGR03752 integ 49.6 1.9E+02 0.0041 28.0 10.1 70 109-191 71-140 (472)
46 PF00170 bZIP_1: bZIP transcri 47.9 84 0.0018 21.1 6.6 37 154-194 17-53 (64)
47 PF07716 bZIP_2: Basic region 47.9 76 0.0017 20.7 6.6 37 154-194 16-52 (54)
48 PRK00888 ftsB cell division pr 47.5 65 0.0014 24.4 5.6 31 164-194 31-61 (105)
49 PF09744 Jnk-SapK_ap_N: JNK_SA 47.3 1.2E+02 0.0027 24.7 7.6 29 163-191 85-113 (158)
50 PF09789 DUF2353: Uncharacteri 46.7 1.8E+02 0.0038 26.7 9.2 45 149-194 69-113 (319)
51 PF06156 DUF972: Protein of un 46.6 1.3E+02 0.0028 22.9 7.9 35 162-196 17-51 (107)
52 PHA02592 52 DNA topisomerase I 45.9 2.8E+02 0.006 26.6 11.2 42 44-90 284-325 (439)
53 smart00340 HALZ homeobox assoc 45.5 57 0.0012 20.7 4.1 26 170-195 8-33 (44)
54 PF15066 CAGE1: Cancer-associa 44.3 1.5E+02 0.0033 28.5 8.5 14 52-65 254-267 (527)
55 KOG0804 Cytoplasmic Zn-finger 43.8 2E+02 0.0042 27.7 9.1 34 155-188 377-410 (493)
56 PLN02372 violaxanthin de-epoxi 43.0 3E+02 0.0066 26.2 11.7 28 140-167 378-405 (455)
57 cd01109 HTH_YyaN Helix-Turn-He 42.0 1.2E+02 0.0027 22.7 6.5 53 137-190 57-109 (113)
58 PF09278 MerR-DNA-bind: MerR, 41.9 95 0.0021 20.6 5.3 44 137-181 14-57 (65)
59 PF06005 DUF904: Protein of un 41.9 1.2E+02 0.0027 21.3 6.1 35 160-194 11-45 (72)
60 KOG0709 CREB/ATF family transc 41.6 32 0.00069 32.9 3.7 58 137-194 233-313 (472)
61 PF15254 CCDC14: Coiled-coil d 40.8 4.3E+02 0.0093 27.3 11.4 84 108-192 391-480 (861)
62 PRK13824 replication initiatio 40.7 62 0.0013 30.6 5.5 93 54-160 104-212 (404)
63 PF15397 DUF4618: Domain of un 40.2 1.7E+02 0.0037 25.9 7.9 36 160-195 186-221 (258)
64 cd04769 HTH_MerR2 Helix-Turn-H 40.2 1E+02 0.0022 23.3 5.9 54 137-190 56-109 (116)
65 PF09789 DUF2353: Uncharacteri 39.5 3E+02 0.0066 25.2 12.0 139 39-194 34-209 (319)
66 PF13870 DUF4201: Domain of un 39.4 2.1E+02 0.0045 23.3 11.4 78 113-193 15-103 (177)
67 PF05812 Herpes_BLRF2: Herpesv 38.8 1.9E+02 0.0041 22.6 7.3 58 105-162 4-65 (118)
68 PF09151 DUF1936: Domain of un 38.7 27 0.00058 20.7 1.8 26 54-79 3-30 (36)
69 PF04977 DivIC: Septum formati 38.5 1.2E+02 0.0025 20.9 5.5 30 164-193 21-50 (80)
70 PF04880 NUDE_C: NUDE protein, 38.4 76 0.0017 26.2 5.1 43 143-190 2-47 (166)
71 PRK13729 conjugal transfer pil 38.0 1.6E+02 0.0035 28.4 7.8 30 163-192 93-122 (475)
72 PF10226 DUF2216: Uncharacteri 37.1 1.7E+02 0.0037 24.8 6.9 25 163-187 51-75 (195)
73 PF11365 DUF3166: Protein of u 36.7 1.1E+02 0.0024 22.9 5.3 34 162-195 10-43 (96)
74 PF07888 CALCOCO1: Calcium bin 36.2 3.9E+02 0.0085 26.4 10.2 7 73-79 107-113 (546)
75 cd04787 HTH_HMRTR_unk Helix-Tu 36.1 1.7E+02 0.0037 22.7 6.7 55 137-192 57-111 (133)
76 PF10186 Atg14: UV radiation r 35.9 2.9E+02 0.0063 23.9 9.4 11 73-83 10-20 (302)
77 PF14009 DUF4228: Domain of un 35.8 30 0.00066 27.6 2.4 32 59-91 14-46 (181)
78 PF03980 Nnf1: Nnf1 ; InterPr 35.6 1.6E+02 0.0036 21.9 6.3 47 134-193 60-106 (109)
79 KOG4637 Adaptor for phosphoino 35.3 27 0.00058 32.6 2.1 43 51-93 366-413 (464)
80 PF10623 PilI: Plasmid conjuga 34.4 38 0.00081 24.5 2.3 30 61-90 8-40 (83)
81 PHA03162 hypothetical protein; 34.0 2.4E+02 0.0052 22.4 7.7 58 105-162 14-75 (135)
82 COG5068 ARG80 Regulator of arg 33.9 34 0.00073 32.2 2.6 68 11-91 9-77 (412)
83 PHA03155 hypothetical protein; 33.9 2.2E+02 0.0048 22.0 7.7 57 105-161 9-65 (115)
84 PRK13169 DNA replication intia 33.6 1.7E+02 0.0037 22.5 6.0 34 162-195 17-50 (110)
85 KOG4687 Uncharacterized coiled 33.1 3.3E+02 0.0072 24.6 8.4 103 69-179 74-200 (389)
86 PF04849 HAP1_N: HAP1 N-termin 32.8 70 0.0015 29.1 4.3 26 169-194 162-187 (306)
87 PF01502 PRA-CH: Phosphoribosy 32.7 18 0.00038 25.9 0.4 38 36-73 18-64 (75)
88 COG3883 Uncharacterized protei 32.2 1.7E+02 0.0037 26.1 6.6 52 109-162 50-101 (265)
89 cd04776 HTH_GnyR Helix-Turn-He 32.0 2.3E+02 0.005 21.6 7.2 55 137-192 55-112 (118)
90 cd01107 HTH_BmrR Helix-Turn-He 31.9 2.1E+02 0.0046 21.3 6.3 49 136-190 57-105 (108)
91 PF14915 CCDC144C: CCDC144C pr 31.8 3.7E+02 0.0079 24.4 8.6 77 109-191 4-80 (305)
92 KOG0183 20S proteasome, regula 31.8 24 0.00052 30.5 1.1 16 60-75 4-19 (249)
93 KOG4252 GTP-binding protein [S 31.7 3.1E+02 0.0066 23.4 7.6 27 58-90 91-117 (246)
94 PF10226 DUF2216: Uncharacteri 31.6 3.2E+02 0.007 23.1 10.2 81 110-195 54-143 (195)
95 TIGR01950 SoxR redox-sensitive 31.1 1.3E+02 0.0028 23.9 5.3 54 137-190 57-110 (142)
96 TIGR02209 ftsL_broad cell divi 31.1 1.6E+02 0.0035 20.6 5.4 31 164-194 28-58 (85)
97 KOG0977 Nuclear envelope prote 30.8 2.8E+02 0.0061 27.4 8.3 18 109-126 111-128 (546)
98 cd04770 HTH_HMRTR Helix-Turn-H 30.7 2.1E+02 0.0046 21.6 6.3 53 137-190 57-109 (123)
99 COG4831 Roadblock/LC7 domain [ 30.7 51 0.0011 24.8 2.5 30 49-79 3-32 (109)
100 cd04785 HTH_CadR-PbrR-like Hel 30.6 2E+02 0.0043 22.1 6.1 54 137-191 57-110 (126)
101 TIGR02047 CadR-PbrR Cd(II)/Pb( 30.5 2E+02 0.0044 22.2 6.2 53 137-190 57-109 (127)
102 smart00338 BRLZ basic region l 29.9 1.6E+02 0.0034 19.8 4.9 27 164-190 37-63 (65)
103 KOG0184 20S proteasome, regula 29.9 27 0.00058 30.3 1.1 21 55-75 3-23 (254)
104 PF09798 LCD1: DNA damage chec 29.5 2.9E+02 0.0063 27.9 8.4 52 142-193 5-59 (654)
105 PF06937 EURL: EURL protein; 29.1 2.6E+02 0.0057 25.0 7.1 36 126-161 207-242 (285)
106 KOG0243 Kinesin-like protein [ 28.9 4.7E+02 0.01 27.9 9.9 57 109-165 409-472 (1041)
107 COG0139 HisI Phosphoribosyl-AM 28.6 23 0.00049 27.3 0.4 38 35-72 49-95 (111)
108 PF04849 HAP1_N: HAP1 N-termin 28.6 3.3E+02 0.0071 24.8 7.9 90 107-196 163-270 (306)
109 PF11629 Mst1_SARAH: C termina 28.4 91 0.002 20.4 3.1 19 134-152 4-22 (49)
110 PF07200 Mod_r: Modifier of ru 27.4 1.4E+02 0.0029 23.6 4.8 50 143-192 29-80 (150)
111 COG4917 EutP Ethanolamine util 27.2 39 0.00085 27.0 1.5 25 53-77 58-82 (148)
112 PF10491 Nrf1_DNA-bind: NLS-bi 27.2 46 0.001 28.5 2.1 49 44-92 34-89 (214)
113 PF14662 CCDC155: Coiled-coil 26.9 3.9E+02 0.0085 22.6 9.3 16 109-124 41-56 (193)
114 cd01108 HTH_CueR Helix-Turn-He 26.6 2.8E+02 0.006 21.3 6.3 53 137-190 57-109 (127)
115 PF04999 FtsL: Cell division p 26.4 2.1E+02 0.0046 20.7 5.4 33 162-194 37-69 (97)
116 PF05812 Herpes_BLRF2: Herpesv 26.3 1.2E+02 0.0026 23.6 4.1 26 168-193 4-29 (118)
117 TIGR02051 MerR Hg(II)-responsi 26.3 2.8E+02 0.006 21.2 6.3 51 137-190 56-106 (124)
118 KOG0946 ER-Golgi vesicle-tethe 26.2 7.7E+02 0.017 25.8 10.7 81 108-193 615-697 (970)
119 COG5000 NtrY Signal transducti 26.2 41 0.00089 33.6 1.8 22 55-76 374-395 (712)
120 PF05529 Bap31: B-cell recepto 26.2 2.3E+02 0.005 23.4 6.2 31 140-182 160-190 (192)
121 PF07058 Myosin_HC-like: Myosi 25.9 5E+02 0.011 23.8 8.4 72 109-191 12-83 (351)
122 COG1382 GimC Prefoldin, chaper 25.8 3.2E+02 0.007 21.3 11.2 42 150-192 68-109 (119)
123 PRK09822 lipopolysaccharide co 25.8 44 0.00096 29.3 1.8 41 38-79 118-161 (269)
124 PRK10227 DNA-binding transcrip 25.5 2.6E+02 0.0057 21.9 6.1 53 137-190 57-109 (135)
125 TIGR02894 DNA_bind_RsfA transc 25.4 3.8E+02 0.0083 22.0 11.4 60 135-194 77-138 (161)
126 cd01282 HTH_MerR-like_sg3 Heli 25.4 2.5E+02 0.0054 21.1 5.8 50 137-187 56-108 (112)
127 PF02183 HALZ: Homeobox associ 25.4 1.9E+02 0.0041 18.4 5.9 36 160-195 5-40 (45)
128 cd01106 HTH_TipAL-Mta Helix-Tu 25.4 2.8E+02 0.006 20.3 6.0 15 137-151 57-71 (103)
129 TIGR02231 conserved hypothetic 25.2 6.2E+02 0.013 24.4 10.1 46 136-182 122-167 (525)
130 PF14282 FlxA: FlxA-like prote 24.9 3E+02 0.0066 20.6 8.2 55 111-182 19-73 (106)
131 TIGR01069 mutS2 MutS2 family p 24.8 7.8E+02 0.017 25.3 12.5 28 141-168 539-566 (771)
132 PHA03162 hypothetical protein; 24.3 1.1E+02 0.0024 24.2 3.6 24 169-192 15-38 (135)
133 PRK09514 zntR zinc-responsive 24.2 2.5E+02 0.0055 22.1 5.8 53 137-190 58-111 (140)
134 KOG3119 Basic region leucine z 24.2 2.2E+02 0.0048 25.2 6.0 26 170-195 218-243 (269)
135 TIGR02044 CueR Cu(I)-responsiv 24.2 2.9E+02 0.0064 21.1 6.1 53 137-190 57-109 (127)
136 KOG4311 Histidinol dehydrogena 24.1 2.2E+02 0.0047 25.7 5.7 57 34-90 180-257 (359)
137 PRK15002 redox-sensitivie tran 24.0 2.3E+02 0.005 22.9 5.6 54 137-190 67-120 (154)
138 PF02151 UVR: UvrB/uvrC motif; 23.9 1.7E+02 0.0037 17.4 4.0 33 142-174 3-35 (36)
139 PF04111 APG6: Autophagy prote 23.9 5.5E+02 0.012 23.2 10.4 12 178-189 110-121 (314)
140 PHA03155 hypothetical protein; 23.8 1.2E+02 0.0026 23.5 3.6 24 169-192 10-33 (115)
141 TIGR02449 conserved hypothetic 23.7 2.6E+02 0.0056 19.4 5.3 30 165-194 5-34 (65)
142 KOG0182 20S proteasome, regula 23.2 41 0.00089 29.0 1.1 17 59-75 8-24 (246)
143 cd04783 HTH_MerR1 Helix-Turn-H 23.0 3.2E+02 0.007 20.8 6.1 51 137-190 57-107 (126)
144 PF09177 Syntaxin-6_N: Syntaxi 22.6 2.4E+02 0.0053 20.5 5.1 76 80-157 16-93 (97)
145 cd01110 HTH_SoxR Helix-Turn-He 22.6 2.9E+02 0.0062 21.7 5.8 53 137-190 57-110 (139)
146 PF04873 EIN3: Ethylene insens 22.4 29 0.00063 32.2 0.0 39 44-82 53-92 (354)
147 PF03428 RP-C: Replication pro 22.4 1.5E+02 0.0033 24.6 4.3 63 60-130 96-170 (177)
148 PF14916 CCDC92: Coiled-coil d 22.2 1.3E+02 0.0029 20.5 3.2 26 105-130 11-40 (60)
149 PF05470 eIF-3c_N: Eukaryotic 22.2 7.6E+02 0.016 24.7 9.7 76 108-186 50-127 (595)
150 PF09941 DUF2173: Uncharacteri 22.1 90 0.0019 23.9 2.6 28 51-79 3-30 (108)
151 PRK09413 IS2 repressor TnpA; R 22.0 2.5E+02 0.0054 21.4 5.2 28 165-192 76-103 (121)
152 PRK14127 cell division protein 21.7 2.8E+02 0.0061 21.2 5.3 46 135-195 20-65 (109)
153 PF04645 DUF603: Protein of un 21.6 4.8E+02 0.01 21.8 8.3 28 142-169 139-166 (181)
154 KOG0963 Transcription factor/C 21.4 7.3E+02 0.016 24.9 9.2 81 113-193 123-208 (629)
155 cd02980 TRX_Fd_family Thioredo 21.3 67 0.0015 21.9 1.7 30 58-88 47-77 (77)
156 TIGR02043 ZntR Zn(II)-responsi 21.3 3E+02 0.0066 21.3 5.7 53 137-190 58-111 (131)
157 KOG2751 Beclin-like protein [S 21.2 7.3E+02 0.016 23.8 9.5 89 81-191 155-243 (447)
158 cd04790 HTH_Cfa-like_unk Helix 21.2 3.1E+02 0.0067 22.4 5.9 48 137-191 58-105 (172)
159 PF06785 UPF0242: Uncharacteri 21.0 6.8E+02 0.015 23.3 9.9 44 148-192 130-173 (401)
160 cd00890 Prefoldin Prefoldin is 21.0 3.6E+02 0.0078 20.2 6.0 29 163-191 97-125 (129)
161 PF09158 MotCF: Bacteriophage 20.9 35 0.00075 25.9 0.2 52 24-90 19-71 (103)
162 KOG0250 DNA repair protein RAD 20.8 1.1E+03 0.023 25.5 11.5 21 107-127 664-684 (1074)
163 PF07558 Shugoshin_N: Shugoshi 20.7 1.4E+02 0.003 19.1 2.9 31 160-190 14-44 (46)
164 smart00030 CLb CLUSTERIN Beta 20.3 5.3E+02 0.011 22.1 7.1 8 157-164 55-62 (206)
165 COG0216 PrfA Protein chain rel 20.3 6E+02 0.013 23.6 7.9 14 80-93 8-21 (363)
166 PRK10803 tol-pal system protei 20.3 2.2E+02 0.0048 25.0 5.1 87 54-164 12-98 (263)
167 PF04912 Dynamitin: Dynamitin 20.1 3.6E+02 0.0077 25.1 6.8 16 109-124 99-114 (388)
168 KOG4673 Transcription factor T 20.1 5.4E+02 0.012 26.4 8.0 124 66-190 282-432 (961)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.2e-38 Score=268.41 Aligned_cols=158 Identities=42% Similarity=0.660 Sum_probs=126.2
Q ss_pred CCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcc--hhhhHHHHhhhccCCCC
Q 036452 20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS--VKSTIDRYKKATADTSN 97 (244)
Q Consensus 20 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~s--m~~iieRY~~~~~~~~~ 97 (244)
|||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++ |..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999986 99999999886654433
Q ss_pred CCchhhhhh--------------------hhhHHHHHHHHHHHHHHHh---hhccccCCCCCCCCH-HHHHHHHHHHHHH
Q 036452 98 TGSICEANA--------------------QFYQQEAAKLRIQISNMQN---SNRNMLGESLSGLNF-KELKNMETRLEKG 153 (244)
Q Consensus 98 ~~~~~~~~~--------------------e~lq~ei~kLk~~i~~L~~---~~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~ 153 (244)
.+....... ..+......+....+.++. ..+++.|+++.+++. .+|..++.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 222111110 0122334445555555543 367899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 036452 154 ISRIRSKKNELLFAEIE-YMQKREV 177 (244)
Q Consensus 154 L~~Ir~rK~~ll~~~i~-~l~kke~ 177 (244)
+..+|..+...+..++. .++.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEK 185 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccch
Confidence 99999999888877765 3343333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=9.5e-34 Score=205.18 Aligned_cols=74 Identities=73% Similarity=1.114 Sum_probs=71.8
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhccC
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATAD 94 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~~ 94 (244)
||+||+|++|||..+|++||+||+.||||||.||||||||+||||||||+|++|+|++|++++||+||++.++.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~ 74 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGS 74 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987753
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.6e-30 Score=190.96 Aligned_cols=74 Identities=55% Similarity=0.840 Sum_probs=70.5
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcc-hhhhHHHHhhhccC
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATAD 94 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~s-m~~iieRY~~~~~~ 94 (244)
||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|++++|++++ +..++++|...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL 75 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence 799999999999999999999999999999999999999999999999999999998876 99999999886653
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=5.2e-30 Score=175.72 Aligned_cols=59 Identities=78% Similarity=1.142 Sum_probs=57.9
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCc
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~ 79 (244)
||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999886
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=3e-29 Score=172.07 Aligned_cols=59 Identities=76% Similarity=1.143 Sum_probs=57.7
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCc
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~ 79 (244)
||+||+|++|+|...|++||+||+.||||||+||||||||+||+|||||+|++++|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.93 E-value=1e-27 Score=159.38 Aligned_cols=51 Identities=59% Similarity=0.993 Sum_probs=47.1
Q ss_pred eeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccC
Q 036452 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 78 (244)
Q Consensus 28 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s 78 (244)
|+|+|.+.|++||+|||.||||||.|||+||||+||||||||+|++|+|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.82 E-value=5e-21 Score=166.65 Aligned_cols=79 Identities=39% Similarity=0.640 Sum_probs=71.8
Q ss_pred hccccccCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHH
Q 036452 8 AAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTID 86 (244)
Q Consensus 8 ~~~~~~~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iie 86 (244)
......-..++.-||+||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|+|++|.++.||.
T Consensus 50 ~~~~~~~~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~ 128 (338)
T KOG0015|consen 50 NSGSQKDGGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT 128 (338)
T ss_pred CcccccCCCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence 3445566678889999999999999999999999999999999999999999999999999999999999997766663
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.81 E-value=1.8e-19 Score=136.82 Aligned_cols=92 Identities=39% Similarity=0.637 Sum_probs=87.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 101 ICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180 (244)
Q Consensus 101 ~~~~~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~ 180 (244)
.+..+.++|+.++.+|+.+++.|+..+|+++|++|++||++||.+||++|+.+|.+||+||+++|.++|+.|++|+..+.
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELE 88 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 036452 181 NSNQLLRAKIAE 192 (244)
Q Consensus 181 een~~L~~~~~~ 192 (244)
++|..|+.++.|
T Consensus 89 ~en~~L~~~~~e 100 (100)
T PF01486_consen 89 EENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHhcC
Confidence 999999999854
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.46 E-value=2.4e-14 Score=130.27 Aligned_cols=68 Identities=41% Similarity=0.606 Sum_probs=64.2
Q ss_pred CCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHH
Q 036452 19 KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTID 86 (244)
Q Consensus 19 ~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iie 86 (244)
.|||+||.|..|+|+.+|.|||+||+.||+|||.||+||.+.+|.|+|.|.+|+++.|+.|..+.|+.
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999987665553
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.51 E-value=0.37 Score=34.28 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+|++.|.+||..+..++..|. ++..+++.|+.+...|.++|..|+.......
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 578999999999999999876 5566678888887777777777766654433
No 11
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.33 E-value=3.7 Score=29.59 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQL 185 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~ 185 (244)
||++=|.+||..+..++..|- ++.-+|+.|+.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999998774 7777888888887777766554
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=86.83 E-value=0.12 Score=28.49 Aligned_cols=14 Identities=43% Similarity=0.805 Sum_probs=11.1
Q ss_pred eeeEeeecCCcccc
Q 036452 62 VSLIVFSSRGRLYE 75 (244)
Q Consensus 62 ValIifS~~gkl~~ 75 (244)
-.+.+|||+|+++.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 34668999999974
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.76 E-value=9.8 Score=26.83 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
+|++=|.+||..+..++..| .++.-+|+.|+.|...|..+-..++...+.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 57788889999998888766 377778888888777666555555444443
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.29 E-value=9.1 Score=29.28 Aligned_cols=51 Identities=24% Similarity=0.418 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
++.|.+||++|...+..|.+-|.++ ..+-.....|.-||..|+..+.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888887777666544 46666677778888888888876543
No 15
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.91 E-value=1.8 Score=33.16 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~ 192 (244)
..++++.+.|+|||+.|+.|++-
T Consensus 75 ~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999854
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=83.77 E-value=2.9 Score=28.59 Aligned_cols=32 Identities=34% Similarity=0.465 Sum_probs=26.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036452 129 NMLGESLSGLNFKELKNMETRLEKGISRIRSK 160 (244)
Q Consensus 129 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~r 160 (244)
+..|++|+.||++||..--..|+.-+.+++.-
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999888887777776643
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.13 E-value=12 Score=28.87 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
.+.|.+||++|...+..+.+-|.++ ..+-.....|+-||..||..+.+..
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578889999988888887776654 4666777888888899998888753
No 18
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.75 E-value=3.8 Score=27.82 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLRAK 189 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~~~ 189 (244)
+++.++|..|..+...|+.||..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888888888888887644
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.65 E-value=11 Score=34.35 Aligned_cols=62 Identities=31% Similarity=0.413 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELL--FAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll--~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
..++.++.++|..+...|...-..|..+|..+- ..++..++.+...+.++-..+..+|.+.+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999888888777653 35555666666666666666666666544
No 20
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.88 E-value=12 Score=34.10 Aligned_cols=62 Identities=27% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELLF--AEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~--~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+.++.++.++|..+...|..-...|..++.++-. +++..+..+.....+.-..+..+|.+.+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999988887776532 4444555555555555555555565544
No 21
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=78.92 E-value=12 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 148 TRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 148 ~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
.++|.++.-|...-+-...++++.|+.+.+.|.+-|..|..
T Consensus 48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333345555555555555555444443
No 22
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.44 E-value=37 Score=26.58 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 148 TRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 148 ~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
..|+..-..--.+|. .+..+|..++++...|..+|..|..+|+.
T Consensus 87 ~~l~~~e~sw~~qk~-~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 87 AELEESEASWEEQKE-QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333443 67888999999999999999999888754
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.19 E-value=49 Score=28.27 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 036452 110 QQEAAKLRIQISNMQNSNR 128 (244)
Q Consensus 110 q~ei~kLk~~i~~L~~~~r 128 (244)
...+.+++.++..++.+..
T Consensus 92 ~~rlp~le~el~~l~~~l~ 110 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 24
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.03 E-value=54 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036452 166 FAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 166 ~~~i~~l~kke~~l~een~~L 186 (244)
.++++.|+.-...++++|..|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 25
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=68.80 E-value=39 Score=29.14 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKN--ELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~--~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
...+|+..|+..++..-+....... ..+..|.+.+++....|-++|..|+.++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3356777777777766555443333 3455666666666777777777777665
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.77 E-value=48 Score=28.33 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 036452 107 QFYQQEAAKLRIQISNMQNS 126 (244)
Q Consensus 107 e~lq~ei~kLk~~i~~L~~~ 126 (244)
..+++++..++.++..+..+
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 45788888888888887754
No 27
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.50 E-value=73 Score=31.69 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 110 QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIR-----SKKNELLFAEIEYMQKREVDLHNSNQ 184 (244)
Q Consensus 110 q~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir-----~rK~~ll~~~i~~l~kke~~l~een~ 184 (244)
..++.++...++.|+.+++.+..+ +..+. .++..|+..|+..-..++ .|+.+.+...|..|+++...-...-.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665544332 00000 556666777766666554 24445566777777776665555556
Q ss_pred HHHHHHHHHh
Q 036452 185 LLRAKIAENE 194 (244)
Q Consensus 185 ~L~~~~~~~~ 194 (244)
.|..++.++.
T Consensus 499 ~L~~~l~~l~ 508 (652)
T COG2433 499 ELERKLAELR 508 (652)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 28
>PRK04098 sec-independent translocase; Provisional
Probab=65.70 E-value=6.8 Score=32.11 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=17.6
Q ss_pred ceeeEeeecCCccccccCcchhhhHHHHhhhc
Q 036452 61 EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKAT 92 (244)
Q Consensus 61 eValIifS~~gkl~~f~s~sm~~iieRY~~~~ 92 (244)
=||||||+|. ||.+.+. .+-+.+..+++..
T Consensus 14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~ 43 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTI 43 (158)
T ss_pred HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHH
Confidence 3788999875 6655432 3444555555543
No 29
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=62.55 E-value=45 Score=25.58 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
.+.+.+||.+|-..++.|-.-|.++ ..|-.....|+=||..||+.+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4577888888888887777666544 34555566677777777777765
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.71 E-value=54 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 142 ELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 142 EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
||+.||..|+.-+.....=+ .+-..|+.++..+..|+..|..+.+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~-----~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLK-----SENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888877554333 33344555555555555555555433
No 31
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.31 E-value=1e+02 Score=25.84 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=11.8
Q ss_pred CCccccccCcchhhhHHHHhhhc
Q 036452 70 RGRLYEYSNNSVKSTIDRYKKAT 92 (244)
Q Consensus 70 ~gkl~~f~s~sm~~iieRY~~~~ 92 (244)
.|-|..-.......+|++|....
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l~ 104 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTLY 104 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333344566667765543
No 32
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.05 E-value=67 Score=26.64 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 141 KELKNMETRLEKGISRIR----------SKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 141 ~EL~~LE~~Le~~L~~Ir----------~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
.+|..++..++..-++.. ..+..-..++|+.++++....+.+...|++|.+..+
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555443 224445677888888888888888888888876654
No 33
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=59.82 E-value=63 Score=26.53 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 036452 139 NFKELKNMETRLEKGISRIRSK---KNELLFAEIEYMQKREVDLHNS 182 (244)
Q Consensus 139 s~~EL~~LE~~Le~~L~~Ir~r---K~~ll~~~i~~l~kke~~l~ee 182 (244)
+..||..|-++++.+..-+|.+ |-.+|.+||..|+.+-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999988888888888765 5668888888888876655543
No 34
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=59.59 E-value=86 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=20.4
Q ss_pred eeEeeecCCccccccCcchhhhHHHHhhh
Q 036452 63 SLIVFSSRGRLYEYSNNSVKSTIDRYKKA 91 (244)
Q Consensus 63 alIifS~~gkl~~f~s~sm~~iieRY~~~ 91 (244)
-+++|.++|++..| ++.+||+.|...
T Consensus 302 Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 302 NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 56777788888888 778899888653
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.06 E-value=43 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELL 165 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll 165 (244)
.++.+||...-..|+.-+..+.+|-..+-
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555555443
No 36
>PRK11637 AmiB activator; Provisional
Probab=56.53 E-value=1.5e+02 Score=27.95 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNE--LLFAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~--ll~~~i~~l~kke~~l~een~~L 186 (244)
++.++..++.++..++...... ..+|..++.+|...-..|.....+ .+..+|+.++++...++.+-..+
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444332 235666666666665555444333 23344444444444444443333
Q ss_pred HHHH
Q 036452 187 RAKI 190 (244)
Q Consensus 187 ~~~~ 190 (244)
+..+
T Consensus 123 ~~~l 126 (428)
T PRK11637 123 ERLL 126 (428)
T ss_pred HHHH
Confidence 3333
No 37
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.28 E-value=24 Score=27.08 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 156 RIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 156 ~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
.||+. -+++.++|..|..+...|++||..|+.-.
T Consensus 64 AVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 64 AVREE-VEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34443 45888999999999999999999998653
No 38
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.58 E-value=44 Score=35.10 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 148 TRLEKGISRIRSKKNE-LLFAEIEYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 148 ~~Le~~L~~Ir~rK~~-ll~~~i~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
..|+.-|...|.|-+. -+..+|-.+++|...++.++...+.+++++...
T Consensus 281 eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 281 EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3466667777766644 456778888888888888888888888876654
No 39
>PRK11637 AmiB activator; Provisional
Probab=53.58 E-value=1.6e+02 Score=27.70 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 036452 112 EAAKLRIQISNMQ 124 (244)
Q Consensus 112 ei~kLk~~i~~L~ 124 (244)
++..++.++..++
T Consensus 48 ~l~~l~~qi~~~~ 60 (428)
T PRK11637 48 QLKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.42 E-value=2.8e+02 Score=29.32 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcc------ccCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHH
Q 036452 107 QFYQQEAAKLRIQISNMQNSNRN------MLGESLSGLNFKELKNMETR---LEKGISRIRSKK------NELLFAEIEY 171 (244)
Q Consensus 107 e~lq~ei~kLk~~i~~L~~~~r~------l~Ge~L~~Ls~~EL~~LE~~---Le~~L~~Ir~rK------~~ll~~~i~~ 171 (244)
+.+|+++..++++++.|+....- --|-+-...|--++.+||++ |..+|-+.|+-- .+.+.++++.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45677777777777666544321 12556666776777777764 666776666421 2233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036452 172 MQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 172 l~kke~~l~een~~L~~~~~~~ 193 (244)
.+.....|......|..++.+.
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4434444555555555555443
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.20 E-value=2.4e+02 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 167 AEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 167 ~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
.+...+..+...|+++...|..+..
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666665555553
No 42
>PF14645 Chibby: Chibby family
Probab=51.77 E-value=25 Score=27.21 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 168 EIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 168 ~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
....++++.+.|+|||+.|+-+++-
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777788888999998888743
No 43
>smart00338 BRLZ basic region leucin zipper.
Probab=50.38 E-value=76 Score=21.39 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 154 ISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 154 L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
-...|.||.+ .+..|..+...|..+|..|..++..+..
T Consensus 17 A~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 17 ARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666543 4577888888888888888888766553
No 44
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.19 E-value=1.1e+02 Score=23.09 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 146 METRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 146 LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++...+.++..+..|+. .+...|+.+.++...++..-..+...+.+
T Consensus 61 v~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555 33666666666666666555555555443
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.58 E-value=1.9e+02 Score=27.99 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
++.++..+..+++.|..++..+. +....+..+++.++...| +-+..+.+.|+.....++..-..|..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666653321 122334455555554433 33444556666665566666556665
Q ss_pred HHH
Q 036452 189 KIA 191 (244)
Q Consensus 189 ~~~ 191 (244)
++.
T Consensus 138 ~l~ 140 (472)
T TIGR03752 138 RLA 140 (472)
T ss_pred HHh
Confidence 553
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.95 E-value=84 Score=21.14 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 154 ISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 154 L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
-...|.||... |..|..+...|..+|..|...+..+.
T Consensus 17 Ar~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 17 ARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543 46777777777777777777665544
No 47
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=47.90 E-value=76 Score=20.67 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 154 ISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 154 L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
-.+-|.||.+ .+..+..+...|..+|..|..++..+.
T Consensus 16 A~r~R~rkk~----~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 16 ARRSRQRKKQ----REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555543 346788888899999999988887654
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.54 E-value=65 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
-+..++..++++...++.+|..|+.++....
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666666666666665543
No 49
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=47.32 E-value=1.2e+02 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
..+..+...|..+...|+++|+.|..++.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566777778888888888876653
No 50
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=46.74 E-value=1.8e+02 Score=26.68 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 149 RLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 149 ~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
.|...|...|++. .-+..+++.|+++...++.+++.||.++....
T Consensus 69 ~La~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 69 NLAQLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 3444455555544 36678899999999999999999999987644
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.61 E-value=1.3e+02 Score=22.93 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 162 NELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 162 ~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
...+.++|..|+.....|.+||..|+-+-+.+...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999887665543
No 52
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=45.89 E-value=2.8e+02 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=27.7
Q ss_pred cchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452 44 RNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK 90 (244)
Q Consensus 44 r~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~ 90 (244)
-++|+|+- .|.+- .-+-+++|.++|++..| .++.+||+.|..
T Consensus 284 ~~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~ 325 (439)
T PHA02592 284 HEKIMKDF-GLIER--VSQNITVINENGKLKVY--ENAEDLIRDFVE 325 (439)
T ss_pred HHHHHHhc-Cchhe--eeeeEEEEecCCeeeec--CCHHHHHHHHHH
Confidence 34667653 23221 23667889899988877 466888888855
No 53
>smart00340 HALZ homeobox associated leucin zipper.
Probab=45.47 E-value=57 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+.|++=-..|.++|.+|+++++++..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778899999999999988764
No 54
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=44.25 E-value=1.5e+02 Score=28.55 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=9.6
Q ss_pred hhhhcccccceeeE
Q 036452 52 YELSVLCDAEVSLI 65 (244)
Q Consensus 52 ~ELSvLCdaeValI 65 (244)
.|+||-|--+|.+-
T Consensus 254 pe~sv~~qkev~~e 267 (527)
T PF15066_consen 254 PEMSVSHQKEVTVE 267 (527)
T ss_pred cccccchhhhcchh
Confidence 47777777777653
No 55
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.80 E-value=2e+02 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 155 SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 155 ~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
+++-++|-+.+.+.++.+++....+.|+|+.|.+
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555566666665555566655543
No 56
>PLN02372 violaxanthin de-epoxidase
Probab=43.00 E-value=3e+02 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFA 167 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~ 167 (244)
++|..++|.+|+.-...|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888887766655544
No 57
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.04 E-value=1.2e+02 Score=22.69 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+.++-......-..+.. -..++.+++..+..+...|+..-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888765543322111222 234566666666666666665555555444
No 58
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=41.88 E-value=95 Score=20.56 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 181 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~e 181 (244)
++|++|+.++-.--+..-....... +++..+++.+.++...|+.
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5777888777622111111222222 4555555555555554444
No 59
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.87 E-value=1.2e+02 Score=21.33 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
.|.+-..+.|..|+.+...|.++|..|.....++.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45556667777777777777777777765554443
No 60
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.65 E-value=32 Score=32.94 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAE-----------------------IEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~-----------------------i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
+.++.+.--|-+.=|..|++||-+.......| -..|++|+..|+.+|..|..+|..+
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34444555555555666777764433332222 3455666666677776666666554
Q ss_pred h
Q 036452 194 E 194 (244)
Q Consensus 194 ~ 194 (244)
+
T Consensus 313 Q 313 (472)
T KOG0709|consen 313 Q 313 (472)
T ss_pred H
Confidence 4
No 61
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.81 E-value=4.3e+02 Score=27.33 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhcc------ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 108 FYQQEAAKLRIQISNMQNSNRN------MLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHN 181 (244)
Q Consensus 108 ~lq~ei~kLk~~i~~L~~~~r~------l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~e 181 (244)
-++.|..-|+.+++.|....|. --|-.--+|-+--|+.|--.|+.-|..-.. -.+++...-++|-|-...+.+
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k-~~e~lq~kneellk~~e~q~~ 469 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLK-SQELLQSKNEELLKVIENQKE 469 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHH-hHHHHHHhHHHHHHHHHHHHH
Confidence 3566666676666666554442 112111234455566654444444443321 122444455555555556666
Q ss_pred HHHHHHHHHHH
Q 036452 182 SNQLLRAKIAE 192 (244)
Q Consensus 182 en~~L~~~~~~ 192 (244)
||+.|+..+.+
T Consensus 470 Enk~~~~~~~e 480 (861)
T PF15254_consen 470 ENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 62
>PRK13824 replication initiation protein RepC; Provisional
Probab=40.69 E-value=62 Score=30.56 Aligned_cols=93 Identities=18% Similarity=0.340 Sum_probs=56.3
Q ss_pred hhcccccceeeEee--ecCCccccccCc----------chhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHH
Q 036452 54 LSVLCDAEVSLIVF--SSRGRLYEYSNN----------SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQIS 121 (244)
Q Consensus 54 LSvLCdaeValIif--S~~gkl~~f~s~----------sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~ 121 (244)
|+.|.+ ++||+. ||+||=|-.-.. ++..++.||...... .+ ....-+.++..++.++.
T Consensus 104 la~Lve--aGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~-------A~-~~~ae~~~~r~lr~~it 173 (404)
T PRK13824 104 LAALVE--AGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEAL-------AE-QVAAERKALRRLRERLT 173 (404)
T ss_pred HHHHHH--CCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHH
Confidence 455554 557776 789998755321 356677887654321 00 11223566777888888
Q ss_pred HHHhhhccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036452 122 NMQNSNRNMLG----ESLSGLNFKELKNMETRLEKGISRIRSK 160 (244)
Q Consensus 122 ~L~~~~r~l~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~r 160 (244)
.+++.++.+.. +.+.+ +...++..+...+..++.+
T Consensus 174 ~~rRdi~~li~~a~~~~~~~----~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 174 LCRRDIAKLIEAAIEEGVPG----DWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHHcCCC
Confidence 88888776653 22222 4777777777777776633
No 63
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.25 E-value=1.7e+02 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+.++.|..+|...++-+..+.++...|+..+..+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666677777777777777766543
No 64
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.21 E-value=1e+02 Score=23.31 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|+.++-...+..-...-..-..++.++++.+.++...++..-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777655443221011111123555555555555555555554544444
No 65
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.54 E-value=3e+02 Score=25.19 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=70.8
Q ss_pred ehhcccchhhhhhhhhhcccccceeeEeeecCCcccccc---CcchhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHH
Q 036452 39 TFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS---NNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAK 115 (244)
Q Consensus 39 TFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~---s~sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~k 115 (244)
++..|..+|-||-.|+--.|+ ..|.+.-++ ..++..++..++.... .. ......+++++..
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk------~L-~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNK------KL-KEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHH------HH-HHHHHHHHHHHHH
Confidence 345677788888777653221 112111111 1256677777654321 11 1122345666666
Q ss_pred HHHHHHHHHhhhccc--cCCCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 036452 116 LRIQISNMQNSNRNM--LGESLSGLN-----------FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVD---- 178 (244)
Q Consensus 116 Lk~~i~~L~~~~r~l--~Ge~L~~Ls-----------~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~---- 178 (244)
++.++..|+..+... .+..+.... ++.+..--.+|+.-+..+-+-|.+++.+. +.++.|...
T Consensus 98 ~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER-D~yk~K~~RLN~E 176 (319)
T PF09789_consen 98 AQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER-DAYKCKAHRLNHE 176 (319)
T ss_pred HhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 666666666654321 122232221 23333333445555555666666665443 555555433
Q ss_pred -----------------HHHHHHHHHHHHHHHh
Q 036452 179 -----------------LHNSNQLLRAKIAENE 194 (244)
Q Consensus 179 -----------------l~een~~L~~~~~~~~ 194 (244)
|--||++|..+|...+
T Consensus 177 Ln~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 177 LNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 5667888888886644
No 66
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.45 E-value=2.1e+02 Score=23.31 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhcc--ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 036452 113 AAKLRIQISNMQNSNRN--MLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLF---------AEIEYMQKREVDLHN 181 (244)
Q Consensus 113 i~kLk~~i~~L~~~~r~--l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~---------~~i~~l~kke~~l~e 181 (244)
...++.++..++...++ -+| ++|.+-|..+|.-.-.....+|.+|-.+|.. ..+...+.|...+..
T Consensus 15 ~~~lk~~l~k~~~ql~~ke~lg---e~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 15 NITLKHQLAKLEEQLRQKEELG---EGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444332 245 4567777777777777777777776655543 224455677777778
Q ss_pred HHHHHHHHHHHH
Q 036452 182 SNQLLRAKIAEN 193 (244)
Q Consensus 182 en~~L~~~~~~~ 193 (244)
++..++..|...
T Consensus 92 ~~~~l~~~l~~~ 103 (177)
T PF13870_consen 92 ELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHH
Confidence 887777777553
No 67
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=38.80 E-value=1.9e+02 Score=22.57 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=41.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 105 NAQFYQQEAAKLRIQISNMQNSNRNMLG----ESLSGLNFKELKNMETRLEKGISRIRSKKN 162 (244)
Q Consensus 105 ~~e~lq~ei~kLk~~i~~L~~~~r~l~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~ 162 (244)
..+.+..++.+|+-++..|++.+++--| .+-..|+..+=+-+-...-.+|...-++|-
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999988887776 555678888888887777777777666653
No 68
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=38.73 E-value=27 Score=20.66 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=17.4
Q ss_pred hhcccccceeeEeeecCCccccc--cCc
Q 036452 54 LSVLCDAEVSLIVFSSRGRLYEY--SNN 79 (244)
Q Consensus 54 LSvLCdaeValIifS~~gkl~~f--~s~ 79 (244)
|+--|++-|-+-||...|.+-.| ++|
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 66779999999999999965444 444
No 69
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.47 E-value=1.2e+02 Score=20.85 Aligned_cols=30 Identities=30% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888888888776
No 70
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.37 E-value=76 Score=26.22 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 036452 143 LKNMETRLEKGISRIRSKKNELLFAEIEY---MQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 143 L~~LE~~Le~~L~~Ir~rK~~ll~~~i~~---l~kke~~l~een~~L~~~~ 190 (244)
|..||..+..++. ++-+|..+|++ |+-..+.|.+|-..|+.++
T Consensus 2 LeD~EsklN~AIE-----RnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIE-----RNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777765 34466666633 3333444444444444444
No 71
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.97 E-value=1.6e+02 Score=28.45 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++|..+...++.|...++.+|..|+.+++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 355566667788888899999999988843
No 72
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.11 E-value=1.7e+02 Score=24.77 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLR 187 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~ 187 (244)
+....+|..|+.-.+.|+++|..|+
T Consensus 51 Q~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 51 QQHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445554444
No 73
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=36.68 E-value=1.1e+02 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 162 NELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 162 ~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
=|+..++.+.|+++...++++|..|..++.....
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999999999988876554
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.20 E-value=3.9e+02 Score=26.39 Aligned_cols=7 Identities=0% Similarity=0.392 Sum_probs=4.3
Q ss_pred cccccCc
Q 036452 73 LYEYSNN 79 (244)
Q Consensus 73 l~~f~s~ 79 (244)
+|.|+.|
T Consensus 107 pFqf~~~ 113 (546)
T PF07888_consen 107 PFQFRAP 113 (546)
T ss_pred CcccCCC
Confidence 5667655
No 75
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=36.12 E-value=1.7e+02 Score=22.72 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++|++|+.++-...+..-... ....+++..++..+..+...|+..-..|...+..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888765433221111 1123466677777777777776666666555533
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.89 E-value=2.9e+02 Score=23.91 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=5.6
Q ss_pred cccccCcchhh
Q 036452 73 LYEYSNNSVKS 83 (244)
Q Consensus 73 l~~f~s~sm~~ 83 (244)
..-||..++..
T Consensus 10 ~~~~C~~C~~~ 20 (302)
T PF10186_consen 10 RRFYCANCVNN 20 (302)
T ss_pred CCeECHHHHHH
Confidence 33456665554
No 77
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=35.75 E-value=30 Score=27.64 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=24.7
Q ss_pred ccceeeEeeecCCccccccCc-chhhhHHHHhhh
Q 036452 59 DAEVSLIVFSSRGRLYEYSNN-SVKSTIDRYKKA 91 (244)
Q Consensus 59 daeValIifS~~gkl~~f~s~-sm~~iieRY~~~ 91 (244)
...++-||+ ++|++-+|..| .+.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 445555555 79999999888 799999998654
No 78
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=35.64 E-value=1.6e+02 Score=21.91 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
..+.++.+++. ++.-......+++.|..+...++.+|..|..+|.+.
T Consensus 60 ~~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 60 WRHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777653 333344446677889999999999999999888764
No 79
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=35.31 E-value=27 Score=32.61 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=29.0
Q ss_pred hhhhhcccccceeeEeeecCCccccccCc-----chhhhHHHHhhhcc
Q 036452 51 AYELSVLCDAEVSLIVFSSRGRLYEYSNN-----SVKSTIDRYKKATA 93 (244)
Q Consensus 51 A~ELSvLCdaeValIifS~~gkl~~f~s~-----sm~~iieRY~~~~~ 93 (244)
-+-|||+||-+|.--+.-.+..-|-|+.| ++++.+..|+..+-
T Consensus 366 ~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 366 CYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred ceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence 35799999988854333334444555555 68999999987653
No 80
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=34.43 E-value=38 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=23.8
Q ss_pred ceeeEeeecCC--ccccccCc-chhhhHHHHhh
Q 036452 61 EVSLIVFSSRG--RLYEYSNN-SVKSTIDRYKK 90 (244)
Q Consensus 61 eValIifS~~g--kl~~f~s~-sm~~iieRY~~ 90 (244)
.+-|+|++.+| |++.+..+ ....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46789999988 67777655 69999999964
No 81
>PHA03162 hypothetical protein; Provisional
Probab=33.96 E-value=2.4e+02 Score=22.41 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=42.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 105 NAQFYQQEAAKLRIQISNMQNSNRNMLGES----LSGLNFKELKNMETRLEKGISRIRSKKN 162 (244)
Q Consensus 105 ~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge~----L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~ 162 (244)
..+.+..++.+|+-++..|++.++.=.|.+ -..|+..+=+-+-...-.+|...-++|-
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKI 75 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKI 75 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998886654443 2348888877777777777776666553
No 82
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=33.91 E-value=34 Score=32.23 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=52.2
Q ss_pred ccccCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcc-hhhhHHHHh
Q 036452 11 REELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYK 89 (244)
Q Consensus 11 ~~~~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~s-m~~iieRY~ 89 (244)
...+++++- |+++-+...-..||..|+.| ||+++||..+-+.||-..--...|+++. +.+.-+-|+
T Consensus 9 ~~~~~~~~~-------i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q 75 (412)
T COG5068 9 SAPSSPRRH-------IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQ 75 (412)
T ss_pred ccccccccc-------cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHh
Confidence 334556654 89999999999999999999 9999999999888887666666676663 555555555
Q ss_pred hh
Q 036452 90 KA 91 (244)
Q Consensus 90 ~~ 91 (244)
..
T Consensus 76 ~~ 77 (412)
T COG5068 76 KF 77 (412)
T ss_pred hh
Confidence 54
No 83
>PHA03155 hypothetical protein; Provisional
Probab=33.91 E-value=2.2e+02 Score=22.01 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036452 105 NAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKK 161 (244)
Q Consensus 105 ~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK 161 (244)
..+.+..++.+|+-++..|++..++=-+.+-..|+..+=.-+-...-.+|...-++|
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998876644544466888888777777777777666665
No 84
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.56 E-value=1.7e+02 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 162 NELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 162 ~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
...+..++..|+.....+.+||..|+-+-..+..
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999977555544
No 85
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.14 E-value=3.3e+02 Score=24.58 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=58.5
Q ss_pred cCCccccccCc--chhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhh-----ccccCCCCCCCCH-
Q 036452 69 SRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSN-----RNMLGESLSGLNF- 140 (244)
Q Consensus 69 ~~gkl~~f~s~--sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~~-----r~l~Ge~L~~Ls~- 140 (244)
..|-..+|++. ++-..|+.|+.....- .+ +.+-+.++...|....+.++... +.+-|..-+..+-
T Consensus 74 gc~a~~e~gterqdLaa~i~etkeeNlkL-----rT--d~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarne 146 (389)
T KOG4687|consen 74 GCDAKIEFGTERQDLAADIEETKEENLKL-----RT--DREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNE 146 (389)
T ss_pred CCCchhhccchhhHHHHHHHHHHHHhHhh-----hH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccch
Confidence 36667788776 6788888887643211 11 22344455555555555544332 2233333233322
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 141 ----------------KELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 179 (244)
Q Consensus 141 ----------------~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l 179 (244)
+-|+.--..|+--|+.+-.-|.+++++. +.++.|...|
T Consensus 147 eelqwrrdeanfic~~EgLkak~a~LafDLkamideKEELimER-Da~kcKa~RL 200 (389)
T KOG4687|consen 147 EELQWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMER-DAMKCKAARL 200 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHH-HHHHHHHHHh
Confidence 2234444567778888888999998876 6666665543
No 86
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.82 E-value=70 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 169 IEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
++.|++|.+.|+++|..|+.+...+.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58899999999999999998875544
No 87
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=32.65 E-value=18 Score=25.94 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=28.1
Q ss_pred cceehhcccchhhhh---------hhhhhcccccceeeEeeecCCcc
Q 036452 36 RQVTFCKRRNGLLKK---------AYELSVLCDAEVSLIVFSSRGRL 73 (244)
Q Consensus 36 RqvTFsKRr~GL~KK---------A~ELSvLCdaeValIifS~~gkl 73 (244)
+-+.||+-|++|-.| +.|+.+-||.|.-|+..-|.|..
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~a 64 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGPA 64 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-S
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCCC
Confidence 445577778777555 57899999999999999998873
No 88
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.24 E-value=1.7e+02 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKN 162 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~ 162 (244)
.+.++..|..+++.+...+...-++ + +=+-.++..|+..|+..=.+|++|+.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~-i-~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKE-I-DQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444333222111 1 11234666666666666666666664
No 89
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.97 E-value=2.3e+02 Score=21.58 Aligned_cols=55 Identities=13% Similarity=0.168 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGI---SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L---~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++++++...+-...+.+- ..++ ...+++.+++..+..+...+++.-..|..++..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLE-KMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777665443321 1122 223466677777777777777666666665544
No 90
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=31.90 E-value=2.1e+02 Score=21.29 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 136 SGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 136 ~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
-++++.|...+-..... ..-..++..+++.+.++...++..-..|...+
T Consensus 57 ~G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 57 LGFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred cCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888877655442 33344556666666666666655555554443
No 91
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=31.80 E-value=3.7e+02 Score=24.45 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
++.+|+.|+-+++.++..+..- +.--++|..-+....+..-+.|+ -..+.+...|-.+..+...|..+|..|..
T Consensus 4 Lq~eia~LrlEidtik~q~qek-----E~ky~ediei~Kekn~~Lqk~lK-LneE~ltkTi~qy~~QLn~L~aENt~L~S 77 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEK-----EKKYLEDIEILKEKNDDLQKSLK-LNEETLTKTIFQYNGQLNVLKAENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 5667777777776665433211 01113555555555555544443 34456667777777788888888888888
Q ss_pred HHH
Q 036452 189 KIA 191 (244)
Q Consensus 189 ~~~ 191 (244)
+++
T Consensus 78 kLe 80 (305)
T PF14915_consen 78 KLE 80 (305)
T ss_pred HHH
Confidence 873
No 92
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=24 Score=30.45 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.5
Q ss_pred cceeeEeeecCCcccc
Q 036452 60 AEVSLIVFSSRGRLYE 75 (244)
Q Consensus 60 aeValIifS~~gkl~~ 75 (244)
-|-||-||||+|.|+.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 3668999999999974
No 93
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=31.72 E-value=3.1e+02 Score=23.40 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=18.6
Q ss_pred cccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452 58 CDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK 90 (244)
Q Consensus 58 CdaeValIifS~~gkl~~f~s~sm~~iieRY~~ 90 (244)
-||++||+|||.+.+- |.+.+++=|.+
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHH
Confidence 4899999999987653 33445655544
No 94
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=31.59 E-value=3.2e+02 Score=23.13 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 036452 110 QQEAAKLRIQISNMQNSNRNMLGES--LSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKR-------EVDLH 180 (244)
Q Consensus 110 q~ei~kLk~~i~~L~~~~r~l~Ge~--L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kk-------e~~l~ 180 (244)
-.||..|++.+.+|+.++..+.+-+ |++ |-+ =-..|..-..+.-.--..+|.+++..+.+| ...|.
T Consensus 54 l~EIR~LKe~NqkLqedNqELRdLCCFLDd----dRq-KgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRDLCCFLDD----DRQ-KGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccch----hHH-HhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887775432211 111 111 111122222222222234555555555554 44555
Q ss_pred HHHHHHHHHHHHHhh
Q 036452 181 NSNQLLRAKIAENER 195 (244)
Q Consensus 181 een~~L~~~~~~~~~ 195 (244)
.+|..|+.-+-.++.
T Consensus 129 rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 129 RENLELKELCLYLDE 143 (195)
T ss_pred HhHHHHHHHHHHHhc
Confidence 667776665544443
No 95
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=31.14 E-value=1.3e+02 Score=23.93 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+..+-..+...-...-.....++.+++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888776543211111112223566666677777776666666665554
No 96
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.07 E-value=1.6e+02 Score=20.62 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
.+..++..++++...++.+|..|+.++....
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5567788889999999999999998887644
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.84 E-value=2.8e+02 Score=27.37 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 036452 109 YQQEAAKLRIQISNMQNS 126 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~ 126 (244)
++.++.+|+.+++.++..
T Consensus 111 ~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 345555566555555443
No 98
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.71 E-value=2.1e+02 Score=21.64 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|+..+-.....+-... ....+++.+++..+..+...|+.....|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888887765543321011 12234556666666666666665555554433
No 99
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.69 E-value=51 Score=24.82 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=22.4
Q ss_pred hhhhhhhcccccceeeEeeecCCccccccCc
Q 036452 49 KKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79 (244)
Q Consensus 49 KKA~ELSvLCdaeValIifS~~gkl~~f~s~ 79 (244)
.|-.||--+-+| +|.=.|||+|||.+|-++
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 356677666666 455679999999999765
No 100
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.57 E-value=2e+02 Score=22.11 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
+++++|+.++-...+..-... ..-..++..++..+..+...|+.....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888755433211111 122346677777777777777777666665553
No 101
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.50 E-value=2e+02 Score=22.15 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+.++-..-+..-... ..-.+++..++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887654322211111 11234667777777777777777666665444
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=29.93 E-value=1.6e+02 Score=19.78 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
.+..+...|+.+...|..++..|+.++
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556667777777777777776554
No 103
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=27 Score=30.32 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=17.3
Q ss_pred hcccccceeeEeeecCCcccc
Q 036452 55 SVLCDAEVSLIVFSSRGRLYE 75 (244)
Q Consensus 55 SvLCdaeValIifS~~gkl~~ 75 (244)
||=.+-|.|.-+|||+|++|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 445677899999999999975
No 104
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=29.55 E-value=2.9e+02 Score=27.90 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 142 ELKNMETRLEKGISRIRSKKNEL---LFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 142 EL~~LE~~Le~~L~~Ir~rK~~l---l~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
+|..|+++-+.-+...+.+.+++ ..+|++.|+...+.|++|.++|.-+....
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666554 34778888999999999999998776553
No 105
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=29.06 E-value=2.6e+02 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=26.2
Q ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 036452 126 SNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKK 161 (244)
Q Consensus 126 ~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK 161 (244)
...+.--|.|++|+++||.+|-..|-..+..|-+--
T Consensus 207 r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeL 242 (285)
T PF06937_consen 207 RHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEEL 242 (285)
T ss_pred cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555688999999999999988866655544433
No 106
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.89 E-value=4.7e+02 Score=27.92 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLS-------GLNFKELKNMETRLEKGISRIRSKKNELL 165 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~-------~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll 165 (244)
+..||++|+.++...+..+--++-++=- .-..+.+++++.+|+..-+.|++.....+
T Consensus 409 ~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777666655333322110 11245667777777777777777666554
No 107
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=28.62 E-value=23 Score=27.27 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=28.4
Q ss_pred Ccceehhcccchhhh---------hhhhhhcccccceeeEeeecCCc
Q 036452 35 NRQVTFCKRRNGLLK---------KAYELSVLCDAEVSLIVFSSRGR 72 (244)
Q Consensus 35 ~RqvTFsKRr~GL~K---------KA~ELSvLCdaeValIifS~~gk 72 (244)
.+-..||+=|+-|-+ |+.|+.+=||.|+-+++..+.|.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 344456666664555 56899999999999999999664
No 108
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.58 E-value=3.3e+02 Score=24.82 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccc--------------cCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 036452 107 QFYQQEAAKLRIQISNMQNSNRNM--------------LGESLSGLN--FKELKNMETRLEKGISRIRSKKNE--LLFAE 168 (244)
Q Consensus 107 e~lq~ei~kLk~~i~~L~~~~r~l--------------~Ge~L~~Ls--~~EL~~LE~~Le~~L~~Ir~rK~~--ll~~~ 168 (244)
+.++..+..|..++..|+.+..++ +-+++..|+ -.++..|...|............+ -+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554333 222221111 122333444444444444333333 24577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 169 IEYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
|-.++++.+.+.-+|..|...+......
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~ 270 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKES 270 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7888888888888888888887665443
No 109
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.41 E-value=91 Score=20.44 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEK 152 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~ 152 (244)
-|..+|++||++.-..|+.
T Consensus 4 fLk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCH
Confidence 3667899998886655543
No 110
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=27.38 E-value=1.4e+02 Score=23.62 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 143 LKNMETRLEKGISRIRSKKNEL--LFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 143 L~~LE~~Le~~L~~Ir~rK~~l--l~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++.+...++..+...+.--... +..+++.++.....+..+-..|..+..+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333332 2344555555555544555555444433
No 111
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=27.25 E-value=39 Score=27.02 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=20.4
Q ss_pred hhhcccccceeeEeeecCCcccccc
Q 036452 53 ELSVLCDAEVSLIVFSSRGRLYEYS 77 (244)
Q Consensus 53 ELSvLCdaeValIifS~~gkl~~f~ 77 (244)
=+.++|||||-++|-|.+.+-..|+
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHHhhccceeeeeecccCccccCC
Confidence 3678999999999999888766663
No 112
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=27.19 E-value=46 Score=28.50 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=38.4
Q ss_pred cchhhhhh----hhhhcccccceeeEeeecCC---ccccccCcchhhhHHHHhhhc
Q 036452 44 RNGLLKKA----YELSVLCDAEVSLIVFSSRG---RLYEYSNNSVKSTIDRYKKAT 92 (244)
Q Consensus 44 r~GL~KKA----~ELSvLCdaeValIifS~~g---kl~~f~s~sm~~iieRY~~~~ 92 (244)
++-|+.|- .|++|=+|-++.|++.+|+- ....|+...++.||..|+...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~I 89 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPVI 89 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHHH
Confidence 34466554 79999999999999999853 445688888999999997643
No 113
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.90 E-value=3.9e+02 Score=22.63 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQ 124 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~ 124 (244)
+..++..|+.++..++
T Consensus 41 L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 41 LAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 114
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=26.57 E-value=2.8e+02 Score=21.32 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+.++-...+..-.... .-..++..++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRASA-DVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888876543322111111 1224666666777777666666555555444
No 115
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.41 E-value=2.1e+02 Score=20.70 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 162 NELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 162 ~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
...+..+++.++++...++++|..|+-++....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556789999999999999999998876543
No 116
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=26.34 E-value=1.2e+02 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 168 EIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 168 ~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
-++.|..+...|+=||+.|++++...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35788888999999999999998653
No 117
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.26 E-value=2.8e+02 Score=21.24 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+..+-...+. ..+.. -..++.+++..++.+...|+.....|...+
T Consensus 56 G~sl~eI~~~l~~~~~--~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THCRE-MYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CCCHHHHHHHHhcccC--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887776543332 11111 124566666666666666666555555443
No 118
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.19 E-value=7.7e+02 Score=25.79 Aligned_cols=81 Identities=20% Similarity=0.144 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 108 FYQQEAAKLRIQISNMQNSNRN--MLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQL 185 (244)
Q Consensus 108 ~lq~ei~kLk~~i~~L~~~~r~--l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~ 185 (244)
++..+..+|-++++.+=+.... -..+..+.+..+++.++.......-.-||+ +..+|+.+++++..|+.+|..
T Consensus 615 ~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~-----lD~~~e~lkQ~~~~l~~e~ee 689 (970)
T KOG0946|consen 615 ALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRE-----LDYQIENLKQMEKELQVENEE 689 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH
Confidence 5556666666555544332211 111334455556665555555443333332 235678888888888888888
Q ss_pred HHHHHHHH
Q 036452 186 LRAKIAEN 193 (244)
Q Consensus 186 L~~~~~~~ 193 (244)
|..++...
T Consensus 690 L~~~vq~~ 697 (970)
T KOG0946|consen 690 LEEEVQDF 697 (970)
T ss_pred HHHHHHHH
Confidence 88777654
No 119
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=26.19 E-value=41 Score=33.58 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.7
Q ss_pred hcccccceeeEeeecCCccccc
Q 036452 55 SVLCDAEVSLIVFSSRGRLYEY 76 (244)
Q Consensus 55 SvLCdaeValIifS~~gkl~~f 76 (244)
|||.++-++||.|.++|.++.|
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999999886
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.18 E-value=2.3e+02 Score=23.36 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNS 182 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~ee 182 (244)
-+|+.+|+++|+. -..+++.|+++-..++.|
T Consensus 160 ~~ei~~lk~el~~------------~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEK------------KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhh
Confidence 3555555555554 234456777776666554
No 121
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=25.95 E-value=5e+02 Score=23.80 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
+...|+--++++..|.+.+|+-.- -++-|.+--..||.++-.--..= +-+..++++...|.++-+.|.+
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~------EVEKLsqTi~ELEEaiLagGaaa-----NavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVL------EVEKLSQTIRELEEAILAGGAAA-----NAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcchHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677766665332 26666666666766654333222 2234566666666666666665
Q ss_pred HHH
Q 036452 189 KIA 191 (244)
Q Consensus 189 ~~~ 191 (244)
+|+
T Consensus 81 ELA 83 (351)
T PF07058_consen 81 ELA 83 (351)
T ss_pred HHH
Confidence 553
No 122
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=3.2e+02 Score=21.29 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 150 LEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 150 Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
-+.++..+..|+. .+.-+|++|.+++..+++.-..|+.+|..
T Consensus 68 k~~~~~eL~er~E-~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 68 KEEAVDELEERKE-TLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554 77788889999988888888888777744
No 123
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.79 E-value=44 Score=29.28 Aligned_cols=41 Identities=24% Similarity=0.500 Sum_probs=30.2
Q ss_pred eehhcccchhhhhhhhhhcccccc---eeeEeeecCCccccccCc
Q 036452 38 VTFCKRRNGLLKKAYELSVLCDAE---VSLIVFSSRGRLYEYSNN 79 (244)
Q Consensus 38 vTFsKRr~GL~KKA~ELSvLCdae---ValIifS~~gkl~~f~s~ 79 (244)
..|.+-|.|++||. -+..||..+ |+-|.||+.++..-||..
T Consensus 118 ~~~~~~~~~~~~~~-~~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 118 SFYRREKGGFLKKI-KFNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhhhccCchhhhh-HHHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 34555588999987 478888655 455669999999888765
No 124
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=25.51 E-value=2.6e+02 Score=21.90 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|+.++-...+..=.... ...+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHSA-DVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887654332101111 1124556667777777777776666665544
No 125
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.44 E-value=3.8e+02 Score=22.02 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 135 LSGLNFKELKNMETRLEKGISRIRS--KKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 135 L~~Ls~~EL~~LE~~Le~~L~~Ir~--rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
...+++++...+-+.+......... .-.+-+..++..|+.+...|+.++..|.+++...+
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999988888888764222221 12235567777888888888888888877765543
No 126
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.43 E-value=2.5e+02 Score=21.09 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGI---SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLR 187 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L---~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~ 187 (244)
++|++|+.++-...+..- .... ...+++.+++..+..+...|+..-..|.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPCP-DLLAVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777655443221 1111 1224555555556555555555444443
No 127
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.43 E-value=1.9e+02 Score=18.43 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+-..++...-+.|+..-..|..+|..|+.++..+..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888889999999999988876553
No 128
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.35 E-value=2.8e+02 Score=20.34 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLE 151 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le 151 (244)
+++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 688888888766553
No 129
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.23 E-value=6.2e+02 Score=24.38 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 136 SGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNS 182 (244)
Q Consensus 136 ~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~ee 182 (244)
+..++.++.++-..+...+..++.++.+ +..++..++++...|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDRE-AERRIRELEKQLSELQNE 167 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3568889999888888888888766653 234444444444444433
No 130
>PF14282 FlxA: FlxA-like protein
Probab=24.91 E-value=3e+02 Score=20.64 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 111 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNS 182 (244)
Q Consensus 111 ~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~ee 182 (244)
..+..|++++..|+..+..+... .+++.++-. .|.++|..+|..|+.....++.+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~---------------~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQKQ---------------QQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666554432 344544432 45666777777777666655443
No 131
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.82 E-value=7.8e+02 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 141 KELKNMETRLEKGISRIRSKKNELLFAE 168 (244)
Q Consensus 141 ~EL~~LE~~Le~~L~~Ir~rK~~ll~~~ 168 (244)
.|+..+...|+..+..++++|.+++.+-
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a 566 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLEL 566 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665433
No 132
>PHA03162 hypothetical protein; Provisional
Probab=24.27 E-value=1.1e+02 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 169 IEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++.|..+...|+=||+.|+++|..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777788888888888744
No 133
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=24.23 E-value=2.5e+02 Score=22.05 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGI-SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L-~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+..+-......- ... .....++..+++.+.++...|+.....|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTC-QEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877654321100 011 11234666666777777666666555554443
No 134
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.20 E-value=2.2e+02 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+.++.+...|+.||..|+.+++++..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888877654
No 135
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=24.17 E-value=2.9e+02 Score=21.12 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+.++-...+..-... .....++..++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNRTS-ADVKARTLEKVAEIERKISELQSMRDQLEALA 109 (127)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888887654322211101 11223556666677777766666666665554
No 136
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=24.07 E-value=2.2e+02 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=37.8
Q ss_pred CCcceehhcccchh---------hhhhhhhhcccccceeeEeeecCCcc-------ccccCc-----chhhhHHHHhh
Q 036452 34 TNRQVTFCKRRNGL---------LKKAYELSVLCDAEVSLIVFSSRGRL-------YEYSNN-----SVKSTIDRYKK 90 (244)
Q Consensus 34 ~~RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIifS~~gkl-------~~f~s~-----sm~~iieRY~~ 90 (244)
+.+-|.||+-|+.| +-+.-.++|-||-|.-..|.-++|+- .-|+.. +++.||-.-+.
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~ 257 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKE 257 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhh
Confidence 45667788777744 44456789999999888788888872 224322 57777754443
No 137
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=24.04 E-value=2.3e+02 Score=22.91 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|+..+-......-...-..-.+++.+++..+.++...|+..-..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888765432221000011233445555556666555555544554433
No 138
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=23.86 E-value=1.7e+02 Score=17.39 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 142 ELKNMETRLEKGISRIRSKKNELLFAEIEYMQK 174 (244)
Q Consensus 142 EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~k 174 (244)
.+..|+..++.+...-.--+-..+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 355566666666655555555555555555543
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.85 E-value=5.5e+02 Score=23.24 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 036452 178 DLHNSNQLLRAK 189 (244)
Q Consensus 178 ~l~een~~L~~~ 189 (244)
.++++...+..+
T Consensus 110 ~~~~e~~sl~~q 121 (314)
T PF04111_consen 110 EFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 140
>PHA03155 hypothetical protein; Provisional
Probab=23.79 E-value=1.2e+02 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 169 IEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++.|..+...|+=||+.|++++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777777777777777743
No 141
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.71 E-value=2.6e+02 Score=19.41 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 165 LFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 165 l~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+.+.|+.|=..-..|..+|..|+.++....
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666777777777777765533
No 142
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.23 E-value=41 Score=29.00 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=13.7
Q ss_pred ccceeeEeeecCCcccc
Q 036452 59 DAEVSLIVFSSRGRLYE 75 (244)
Q Consensus 59 daeValIifS~~gkl~~ 75 (244)
+-|--+.||||.|+||.
T Consensus 8 gfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CccceEEEECCCceEEe
Confidence 44566889999999985
No 143
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.05 E-value=3.2e+02 Score=20.83 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|..++-..-... .. ..-.+++..+++.+.++...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 57 GFTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777765432211 01 11234556666666666666665555555444
No 144
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.64 E-value=2.4e+02 Score=20.55 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=36.5
Q ss_pred chhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhhccccCC--CCCCCCHHHHHHHHHHHHHHHHHH
Q 036452 80 SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGE--SLSGLNFKELKNMETRLEKGISRI 157 (244)
Q Consensus 80 sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge--~L~~Ls~~EL~~LE~~Le~~L~~I 157 (244)
.+..++.+|........ +.....+....+...+..+..+++.|++...-.... .. +++..||..-...+...-..|
T Consensus 16 ~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHH
Confidence 36677777776554322 000001111234555666666666666655422111 11 456666666665555544444
No 145
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=22.58 E-value=2.9e+02 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGI-SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L-~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|+.++-..+...- ..+. ....++..++..+.++...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKA-DWERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888655432211 1111 1123444455566666666666555555444
No 146
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=22.43 E-value=29 Score=32.19 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhcccccceee-EeeecCCccccccCcchh
Q 036452 44 RNGLLKKAYELSVLCDAEVSL-IVFSSRGRLYEYSNNSVK 82 (244)
Q Consensus 44 r~GL~KKA~ELSvLCdaeVal-IifS~~gkl~~f~s~sm~ 82 (244)
-.|++|=+.=..-||+|.-+| =|.|..||+-+|+|+|+.
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 346666667778999999998 788999999999999876
No 147
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=22.42 E-value=1.5e+02 Score=24.63 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=36.9
Q ss_pred cceeeEee--ecCCccccccCc----------chhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 036452 60 AEVSLIVF--SSRGRLYEYSNN----------SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSN 127 (244)
Q Consensus 60 aeValIif--S~~gkl~~f~s~----------sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~~ 127 (244)
+|++||+. ||+||=|-.-++ ++..++.||...... .+ .....+..+..++.++..+.+.+
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~-------a~-~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAAL-------AE-AARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887 688987765322 466778888654431 00 11233455666777777766665
Q ss_pred ccc
Q 036452 128 RNM 130 (244)
Q Consensus 128 r~l 130 (244)
+.+
T Consensus 168 ~~l 170 (177)
T PF03428_consen 168 RKL 170 (177)
T ss_pred HHH
Confidence 543
No 148
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=22.21 E-value=1.3e+02 Score=20.51 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=18.4
Q ss_pred hhhhhHHH----HHHHHHHHHHHHhhhccc
Q 036452 105 NAQFYQQE----AAKLRIQISNMQNSNRNM 130 (244)
Q Consensus 105 ~~e~lq~e----i~kLk~~i~~L~~~~r~l 130 (244)
+..|++++ +..|..+|+.|++.++.+
T Consensus 11 ~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 11 SILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44577655 566788899998887653
No 149
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=22.16 E-value=7.6e+02 Score=24.66 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 108 FYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKK--NELLFAEIEYMQKREVDLHNSNQL 185 (244)
Q Consensus 108 ~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK--~~ll~~~i~~l~kke~~l~een~~ 185 (244)
.+..+.++|.+.+.+-.. ...+..+-.+=++-|-.||..|...+..-..+| ...-..-...+++|.+.-..+...
T Consensus 50 ~i~~eFd~L~k~~~K~~~---~~~~~~~P~~yir~l~~Led~v~e~~~~ke~~Kkms~~nakaln~lkQklkK~~k~~e~ 126 (595)
T PF05470_consen 50 SILTEFDKLNKQLEKSKK---IQQNEGIPRFYIRALVELEDFVNETWADKEAKKKMSKNNAKALNTLKQKLKKYNKEYEA 126 (595)
T ss_pred HHHHHHHHHHHHHHHHhh---hhhcCCCChhHHHHHHHHHHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHHHhhhhhHHH
Confidence 356778888777776543 223456777789999999999999775433333 222234456677776644444333
Q ss_pred H
Q 036452 186 L 186 (244)
Q Consensus 186 L 186 (244)
.
T Consensus 127 ~ 127 (595)
T PF05470_consen 127 Q 127 (595)
T ss_pred H
Confidence 3
No 150
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.06 E-value=90 Score=23.94 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=21.8
Q ss_pred hhhhhcccccceeeEeeecCCccccccCc
Q 036452 51 AYELSVLCDAEVSLIVFSSRGRLYEYSNN 79 (244)
Q Consensus 51 A~ELSvLCdaeValIifS~~gkl~~f~s~ 79 (244)
-.+|-.|-+| +|+..||++|++.+|-..
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~ 30 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKGE 30 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeecC
Confidence 4577777777 577889999999998543
No 151
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.98 E-value=2.5e+02 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 165 LFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 165 l~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
..+++..|+++...|..|+..|++.+.-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888999999998887644
No 152
>PRK14127 cell division protein GpsB; Provisional
Probab=21.73 E-value=2.8e+02 Score=21.23 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 135 LSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 135 L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+-+++.+|...+-..+-. ..+.+.+....|.+++..|+.++.+.+.
T Consensus 20 ~RGYd~~EVD~FLd~V~~---------------dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIK---------------DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666554432 2334444555566666666666665543
No 153
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=21.65 E-value=4.8e+02 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 142 ELKNMETRLEKGISRIRSKKNELLFAEI 169 (244)
Q Consensus 142 EL~~LE~~Le~~L~~Ir~rK~~ll~~~i 169 (244)
++..|+..|....+.--.++.+|+-+-+
T Consensus 139 ~i~slk~EL~d~iKe~e~~emeLyyecM 166 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREMELYYECM 166 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556665555555445555544333
No 154
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.35 E-value=7.3e+02 Score=24.91 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCC-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 113 AAKLRIQISNMQNSNRNMLGESLSGLN-FKELKNMETRLEKGIS----RIRSKKNELLFAEIEYMQKREVDLHNSNQLLR 187 (244)
Q Consensus 113 i~kLk~~i~~L~~~~r~l~Ge~L~~Ls-~~EL~~LE~~Le~~L~----~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~ 187 (244)
..+|+.++..+..+...+.+..+.-.+ .+.|..++..++...+ -+.....+-..+....|+..+..+++.+..+.
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le 202 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELE 202 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444333332221111 1234445555554444 44444444444445555555566666666666
Q ss_pred HHHHHH
Q 036452 188 AKIAEN 193 (244)
Q Consensus 188 ~~~~~~ 193 (244)
+++...
T Consensus 203 ~ki~~l 208 (629)
T KOG0963|consen 203 KKISSL 208 (629)
T ss_pred HHHHHH
Confidence 555444
No 155
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=21.35 E-value=67 Score=21.93 Aligned_cols=30 Identities=17% Similarity=0.442 Sum_probs=20.1
Q ss_pred cccceeeEeeecCCccccccCc-chhhhHHHH
Q 036452 58 CDAEVSLIVFSSRGRLYEYSNN-SVKSTIDRY 88 (244)
Q Consensus 58 CdaeValIifS~~gkl~~f~s~-sm~~iieRY 88 (244)
|+..-.|+|. |.|..|...++ .+.+||+.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6555455554 67888887776 588888753
No 156
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.34 E-value=3e+02 Score=21.28 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEK-GISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~-~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+++++|...+-..... .-... ..-..++.++++.++++...|+.-...|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888876653311 00001 12234667777777777777766555554444
No 157
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.24 E-value=7.3e+02 Score=23.77 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036452 81 VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSK 160 (244)
Q Consensus 81 m~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~r 160 (244)
|.+.++.|+.+........... +...+..+.+.+..+.+.|-..+ ++|..=+..|+..|...+.+
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~l-------------k~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQL-------------EELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 161 KNELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 161 K~~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
|.++ .+++..-..+-|...+..++
T Consensus 220 ~~~~-------~e~~~~~~~ey~~~~~q~~~ 243 (447)
T KOG2751|consen 220 AERL-------NEEEDQYWREYNNFQRQLIE 243 (447)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhhhc
No 158
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.19 E-value=3.1e+02 Score=22.41 Aligned_cols=48 Identities=6% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
+++++|+..+-..-... ...++.+++..+.++...|+..-..|...+.
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~ 105 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLLK 105 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777765433222 2345556666666666666665555555543
No 159
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.00 E-value=6.8e+02 Score=23.28 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 148 TRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 148 ~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~ 192 (244)
++||..+.+.++++. -+.-+++.+.+.-+..++++..|.+++.|
T Consensus 130 q~LE~li~~~~EEn~-~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 130 QHLEGLIRHLREENQ-CLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 455555566665554 34556667766666666677666666655
No 160
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.96 E-value=3.6e+02 Score=20.21 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
..+..+++.+.+....+..+-..+...+.
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666665555555544
No 161
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=20.94 E-value=35 Score=25.93 Aligned_cols=52 Identities=23% Similarity=0.469 Sum_probs=35.2
Q ss_pred ccceeee-cCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452 24 KIEIKRI-ENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK 90 (244)
Q Consensus 24 Ki~ik~I-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~ 90 (244)
+|++|-+ +|.++=.|+|.||-.|+ --+=...+|.+--|+-.-.+++++.|..
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Gi---------------rqfEi~n~G~~RI~gYk~se~~~~~f~s 71 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGI---------------RQFEIRNKGEFRIFGYKMSEEIIKKFTS 71 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTE---------------EEEEEETTSEEEEEEES--HHHHHHHHH
T ss_pred ceeeeeeEeeccceEEeeecccCce---------------eEEEEecCCcEEEEEEcCCHHHHHHHHh
Confidence 5778776 78899999999999994 2233566786666665555677777765
No 162
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.75 E-value=1.1e+03 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 036452 107 QFYQQEAAKLRIQISNMQNSN 127 (244)
Q Consensus 107 e~lq~ei~kLk~~i~~L~~~~ 127 (244)
+.++.+...++.++..++...
T Consensus 664 e~le~e~~~l~~~~~~l~~~~ 684 (1074)
T KOG0250|consen 664 EDLEREASRLQKEILELENQR 684 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666555555443
No 163
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.72 E-value=1.4e+02 Score=19.10 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+....++..|..+.++...|..||..||.++
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3455677778888888889999999988775
No 164
>smart00030 CLb CLUSTERIN Beta chain.
Probab=20.32 E-value=5.3e+02 Score=22.05 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 036452 157 IRSKKNEL 164 (244)
Q Consensus 157 Ir~rK~~l 164 (244)
.+.+|...
T Consensus 55 ~kk~KeeA 62 (206)
T smart00030 55 AKKKKEEA 62 (206)
T ss_pred HHHHHHHH
Confidence 34444433
No 165
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.30 E-value=6e+02 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.0
Q ss_pred chhhhHHHHhhhcc
Q 036452 80 SVKSTIDRYKKATA 93 (244)
Q Consensus 80 sm~~iieRY~~~~~ 93 (244)
.+..+.+||.....
T Consensus 8 kl~~~~~r~~el~~ 21 (363)
T COG0216 8 KLESLLERYEELEA 21 (363)
T ss_pred HHHHHHHHHHHHHH
Confidence 47788888877543
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.30 E-value=2.2e+02 Score=25.04 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhcccccceeeEeeecCCccccccCcchhhhHHHHhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhhhccccCC
Q 036452 54 LSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGE 133 (244)
Q Consensus 54 LSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge 133 (244)
|++|+++-+....+.|- .+...+++++++-+.+..+... .-.+-...|..+++.|+.++..+.|
T Consensus 12 ~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le~~~~--------------~~~~~~~~l~~ql~~lq~ev~~LrG- 75 (263)
T PRK10803 12 LSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLERISN--------------AHSQLLTQLQQQLSDNQSDIDSLRG- 75 (263)
T ss_pred HHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHhh-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEKGISRIRSKKNEL 164 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~l 164 (244)
++.++..+|+....+-|+.-.++
T Consensus 76 --------~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 76 --------QIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHH
No 167
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.13 E-value=3.6e+02 Score=25.05 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 036452 109 YQQEAAKLRIQISNMQ 124 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~ 124 (244)
++.|+..|+++++..+
T Consensus 99 L~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 99 LRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555555443
No 168
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.10 E-value=5.4e+02 Score=26.39 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred eeecCCccccccCc-----chhhhHHH--------------HhhhccCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 036452 66 VFSSRGRLYEYSNN-----SVKSTIDR--------------YKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNS 126 (244)
Q Consensus 66 ifS~~gkl~~f~s~-----sm~~iieR--------------Y~~~~~~~~~~~~~~~~~~e~lq~ei~kLk~~i~~L~~~ 126 (244)
+|+.+|.+|+-..+ +...+-+| -..+.+..+....+.-.+....+.+++|+.++|..|...
T Consensus 282 ~~~s~~s~~eiiin~ng~SsT~e~ser~s~~v~~el~~~~~~~e~~es~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~ 361 (961)
T KOG4673|consen 282 IFESDGSPYEIIINKNGRSSTDEISERISDFVSRELDSRLDTSELNESQRSSSATNVSDSDDVQLELDKTKKEIKMLNNA 361 (961)
T ss_pred hccCCCCcceeecCCCCCccccccccccchHHHHHhccchhhHHhhhccCCCCCccccCchhHHHHHHHHHHHHHHHHHH
Q ss_pred hccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 127 NRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNEL--------LFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 127 ~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~l--------l~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+. -....|-.++..-+.-+|.++...+...+.+-..- ....|.++.||...+..|.-.|+.++
T Consensus 362 le-aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ 432 (961)
T KOG4673|consen 362 LE-AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQ 432 (961)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Done!