Query 036452
Match_columns 244
No_of_seqs 222 out of 1663
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.9E-39 1E-43 231.8 1.7 73 21-93 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.1E-38 3.9E-43 234.2 1.6 75 21-95 1-75 (90)
3 1hbx_A SRF, serum response fac 100.0 1.7E-38 5.8E-43 234.2 0.8 79 11-89 1-79 (92)
4 1mnm_A Protein (MCM1 transcrip 100.0 3.1E-38 1E-42 235.8 1.1 75 16-90 12-86 (100)
5 1k6o_B SRF, serum response fac 100.0 6.6E-38 2.2E-42 235.4 1.6 82 14-95 3-89 (103)
6 2jee_A YIIU; FTSZ, septum, coi 90.9 1.7 5.9E-05 30.5 8.3 44 138-186 3-46 (81)
7 1dip_A Delta-sleep-inducing pe 77.3 3.7 0.00013 28.2 4.5 27 163-189 18-44 (78)
8 2w6a_A ARF GTPase-activating p 77.2 13 0.00044 24.4 8.7 53 136-188 8-62 (63)
9 3hnw_A Uncharacterized protein 72.5 30 0.001 26.5 9.2 18 109-126 66-83 (138)
10 3nmd_A CGMP dependent protein 70.1 23 0.00079 24.2 7.8 52 135-193 15-66 (72)
11 1gd2_E Transcription factor PA 69.2 17 0.00058 24.6 6.3 45 151-195 17-64 (70)
12 3s9g_A Protein hexim1; cyclin 68.2 19 0.00064 26.1 6.6 25 166-190 64-88 (104)
13 2dfs_A Myosin-5A; myosin-V, in 66.4 55 0.0019 33.4 12.2 25 170-194 1019-1043(1080)
14 2oqq_A Transcription factor HY 64.7 21 0.00072 21.7 5.7 26 165-190 15-40 (42)
15 3gp4_A Transcriptional regulat 63.2 34 0.0012 26.0 7.9 58 137-195 59-116 (142)
16 2dgc_A Protein (GCN4); basic d 62.8 30 0.001 22.8 6.6 37 155-195 22-58 (63)
17 1dh3_A Transcription factor CR 61.2 29 0.00099 22.1 6.6 35 157-195 16-50 (55)
18 1a93_B MAX protein, coiled coi 59.4 15 0.00052 21.3 3.9 26 159-184 6-31 (34)
19 3hnw_A Uncharacterized protein 58.8 58 0.002 24.8 10.6 52 143-194 77-130 (138)
20 3oja_B Anopheles plasmodium-re 58.1 1.1E+02 0.0038 28.1 12.0 27 168-194 552-578 (597)
21 1j1d_C Troponin I, TNI; THIN f 57.8 60 0.0021 24.7 9.7 32 133-164 53-84 (133)
22 3gpv_A Transcriptional regulat 57.6 36 0.0012 26.0 7.2 57 137-194 73-129 (148)
23 2v71_A Nuclear distribution pr 55.5 81 0.0028 25.5 12.4 28 168-195 89-116 (189)
24 2wt7_A Proto-oncogene protein 54.2 42 0.0014 21.8 6.6 36 156-195 16-51 (63)
25 1j1e_C Troponin I, TNI; THIN f 53.8 56 0.0019 26.2 7.8 32 134-165 54-85 (180)
26 2yy0_A C-MYC-binding protein; 52.8 20 0.00069 22.8 4.1 28 164-191 23-50 (53)
27 1ytz_T Troponin T; muscle, THI 52.7 56 0.0019 23.9 7.1 32 133-164 37-68 (107)
28 1t2k_D Cyclic-AMP-dependent tr 51.6 45 0.0016 21.4 6.6 37 155-195 14-50 (61)
29 2rpa_A Katanin P60 ATPase-cont 50.7 9.2 0.00031 26.6 2.3 35 48-93 16-50 (78)
30 1deq_A Fibrinogen (alpha chain 50.3 1.4E+02 0.0048 26.7 10.4 9 81-89 54-62 (390)
31 3na7_A HP0958; flagellar bioge 50.2 53 0.0018 27.4 7.6 37 139-175 88-126 (256)
32 1jnm_A Proto-oncogene C-JUN; B 49.3 51 0.0017 21.3 6.6 38 155-196 14-51 (62)
33 2xus_A Breast cancer metastasi 48.4 48 0.0017 20.8 5.6 33 140-179 12-44 (49)
34 1j1d_B Troponin T, TNT; THIN f 48.2 58 0.002 23.8 6.5 31 134-164 38-68 (106)
35 1go4_E MAD1 (mitotic arrest de 45.9 73 0.0025 23.0 6.6 13 178-190 79-91 (100)
36 1go4_E MAD1 (mitotic arrest de 45.9 44 0.0015 24.2 5.4 30 167-196 12-41 (100)
37 3twe_A Alpha4H; unknown functi 44.4 28 0.00095 18.5 3.0 20 109-128 6-25 (27)
38 1ci6_A Transcription factor AT 43.7 65 0.0022 21.0 5.8 28 168-195 24-51 (63)
39 1hjb_A Ccaat/enhancer binding 43.0 84 0.0029 22.0 6.6 26 170-195 39-64 (87)
40 3oja_A Leucine-rich immune mol 42.5 1.9E+02 0.0064 25.9 12.3 31 165-195 433-463 (487)
41 3uux_B Mitochondrial division 42.4 1.5E+02 0.0052 24.8 9.2 57 137-194 148-204 (242)
42 1q08_A Zn(II)-responsive regul 41.5 84 0.0029 21.6 6.7 54 137-191 16-70 (99)
43 1ci6_A Transcription factor AT 40.6 74 0.0025 20.7 6.6 28 164-191 34-61 (63)
44 1g6u_A Domain swapped dimer; d 38.9 62 0.0021 19.4 4.8 22 136-157 15-36 (48)
45 3vem_A Helicase protein MOM1; 38.1 1.2E+02 0.0041 22.4 10.4 69 108-189 36-106 (115)
46 3m9b_A Proteasome-associated A 37.4 53 0.0018 27.8 5.4 41 141-186 54-94 (251)
47 2l5g_A GPS2 protein, G protein 36.8 50 0.0017 19.4 3.6 14 170-183 18-31 (38)
48 1p9i_A Cortexillin I/GCN4 hybr 36.8 43 0.0015 18.3 3.1 18 176-193 8-25 (31)
49 1gu4_A CAAT/enhancer binding p 36.0 1E+02 0.0036 21.1 6.6 27 170-196 39-65 (78)
50 2dfs_A Myosin-5A; myosin-V, in 35.0 3.2E+02 0.011 27.8 11.8 8 166-173 1036-1043(1080)
51 1gd2_E Transcription factor PA 34.4 89 0.003 21.0 5.2 22 165-186 48-69 (70)
52 2l5g_B Putative uncharacterize 33.7 80 0.0027 19.1 5.2 37 138-182 2-38 (42)
53 1am9_A Srebp-1A, protein (ster 32.0 81 0.0028 21.5 4.9 28 167-194 50-77 (82)
54 2aze_A Transcription factor DP 30.6 1.9E+02 0.0065 22.5 7.7 46 139-186 3-48 (155)
55 1m2d_A [2Fe-2S] ferredoxin; th 29.0 28 0.00094 25.1 2.1 32 58-90 59-91 (110)
56 3ghg_A Fibrinogen alpha chain; 28.4 3.7E+02 0.013 25.1 10.6 9 81-89 51-59 (562)
57 1t2k_D Cyclic-AMP-dependent tr 26.7 1.3E+02 0.0044 19.2 5.5 27 164-190 33-59 (61)
58 3oja_B Anopheles plasmodium-re 24.2 4.1E+02 0.014 24.2 11.5 32 160-191 523-554 (597)
59 3q4f_C DNA repair protein XRCC 24.1 82 0.0028 25.3 4.1 23 167-189 161-183 (186)
60 1deb_A APC protein, adenomatou 23.2 1.3E+02 0.0045 18.9 4.1 21 172-192 8-28 (54)
61 3thf_A Protein shroom; coiled- 23.1 1.7E+02 0.0057 23.6 5.8 34 156-193 12-45 (190)
62 2jo8_A Serine/threonine-protei 22.9 88 0.003 19.8 3.3 20 134-153 6-25 (51)
63 1fxk_A Prefoldin; archaeal pro 22.9 2E+02 0.0067 20.0 9.5 51 129-190 52-102 (107)
64 3mq7_A Bone marrow stromal ant 22.4 2.4E+02 0.0082 20.9 8.7 48 146-194 58-105 (121)
65 2oa5_A Hypothetical protein BQ 21.9 55 0.0019 24.1 2.5 22 169-190 10-31 (110)
66 3s4r_A Vimentin; alpha-helix, 21.4 2.2E+02 0.0074 20.0 11.2 34 160-193 49-82 (93)
67 1q06_A Transcriptional regulat 21.2 2.2E+02 0.0075 21.0 6.0 53 137-190 57-109 (135)
68 1nkp_A C-MYC, MYC proto-oncoge 21.0 1.7E+02 0.006 20.2 5.0 23 172-194 64-86 (88)
69 3nrf_A APAG protein; structura 20.4 17 0.00057 26.7 -0.6 42 30-76 21-62 (106)
70 3h4p_A Proteasome subunit alph 20.3 22 0.00074 30.0 0.0 16 60-75 12-27 (264)
71 1nkp_B MAX protein, MYC proto- 20.3 1.3E+02 0.0045 20.3 4.2 23 169-191 56-78 (83)
72 1nlw_A MAD protein, MAX dimeri 20.1 1.9E+02 0.0063 19.7 4.9 19 111-129 11-29 (80)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.9e-39 Score=231.77 Aligned_cols=73 Identities=49% Similarity=0.874 Sum_probs=70.1
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhcc
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATA 93 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~ 93 (244)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|++||+||+..+.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.1e-38 Score=234.24 Aligned_cols=75 Identities=48% Similarity=0.846 Sum_probs=72.4
Q ss_pred CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhccCC
Q 036452 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADT 95 (244)
Q Consensus 21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~~~ 95 (244)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+..+...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPH 75 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999877543
No 3
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.7e-38 Score=234.19 Aligned_cols=79 Identities=35% Similarity=0.567 Sum_probs=72.4
Q ss_pred ccccCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHh
Q 036452 11 REELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYK 89 (244)
Q Consensus 11 ~~~~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~ 89 (244)
+|....++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|++|.
T Consensus 1 ~~~~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 1 SGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp -----CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcCcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 3667788999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.1e-38 Score=235.76 Aligned_cols=75 Identities=43% Similarity=0.651 Sum_probs=70.7
Q ss_pred cccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452 16 PKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK 90 (244)
Q Consensus 16 ~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~ 90 (244)
+++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999964
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.6e-38 Score=235.40 Aligned_cols=82 Identities=34% Similarity=0.569 Sum_probs=74.6
Q ss_pred cCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHH-----H
Q 036452 14 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDR-----Y 88 (244)
Q Consensus 14 ~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieR-----Y 88 (244)
...++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|++ |
T Consensus 3 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~Gk~l 82 (103)
T 1k6o_B 3 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL 82 (103)
T ss_dssp --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHHHHH
T ss_pred CCCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhhhHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred hhhccCC
Q 036452 89 KKATADT 95 (244)
Q Consensus 89 ~~~~~~~ 95 (244)
..++...
T Consensus 83 ~~~c~~~ 89 (103)
T 1k6o_B 83 IQTCLNS 89 (103)
T ss_dssp HHHTTCC
T ss_pred HHHHhcC
Confidence 5555443
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.91 E-value=1.7 Score=30.53 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L 186 (244)
+|++=|.+||..+..++..|- ++..+|+.|+.+...|..++..+
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999998764 66777788888877766666553
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.29 E-value=3.7 Score=28.18 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 163 ELLFAEIEYMQKREVDLHNSNQLLRAK 189 (244)
Q Consensus 163 ~ll~~~i~~l~kke~~l~een~~L~~~ 189 (244)
+++.++|..|..+...|+.||..|+.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888643
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=77.24 E-value=13 Score=24.40 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 136 SGLNFKELKNMETRLEKGISRIRS--KKNELLFAEIEYMQKREVDLHNSNQLLRA 188 (244)
Q Consensus 136 ~~Ls~~EL~~LE~~Le~~L~~Ir~--rK~~ll~~~i~~l~kke~~l~een~~L~~ 188 (244)
+..++.|..++...|-.+=.+|.. +=+.-+.+++..++++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 356788888888888777555542 12334567888889999999999998873
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.53 E-value=30 Score=26.48 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 036452 109 YQQEAAKLRIQISNMQNS 126 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~ 126 (244)
+-.++-+++.+++.|+..
T Consensus 66 iadEl~k~~~~~~~L~~~ 83 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLD 83 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666655555433
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.10 E-value=23 Score=24.15 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 135 LSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 135 L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
+++++. +.+|+..|......||.+.. + |+.+.+......++...|+.++...
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~-~----I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDA-L----IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443 88889999999888886654 2 5677777777777778888777543
No 11
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.15 E-value=17 Score=24.63 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 151 EKGISRIRSKKNELL---FAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 151 e~~L~~Ir~rK~~ll---~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
-.+-...|+||.+-| ..++..|......+..+|..|+.++..+..
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776543 345555555555566777777777765543
No 12
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=68.15 E-value=19 Score=26.10 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 166 FAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 166 ~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
..+|..|..+...|..+|..|+.+-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888886553
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.43 E-value=55 Score=33.39 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+.|+.+...|+++|..|+.++.+++
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999887766
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.66 E-value=21 Score=21.66 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 165 LFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 165 l~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
+......|..+...|+.||..||+-+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44556778888889999999998765
No 15
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=63.19 E-value=34 Score=25.99 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
++|++|+..+-...+.+-..+..+ .+++.++++.+..+...|+.....|..++...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889888776654433233322 3467777788888888888777777777765443
No 16
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.81 E-value=30 Score=22.77 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 155 SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 155 ~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
.+.|.||. +.++.|..+...|..+|..|..++..+..
T Consensus 22 rrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 22 RRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556664 45688899999999999999988876543
No 17
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.23 E-value=29 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 157 IRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 157 Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
-|.||. ..++.|..++..|+.+|..|..++..+..
T Consensus 16 SR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 16 SRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554 45688899999999999999999877553
No 18
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.41 E-value=15 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 159 SKKNELLFAEIEYMQKREVDLHNSNQ 184 (244)
Q Consensus 159 ~rK~~ll~~~i~~l~kke~~l~een~ 184 (244)
.||+.-....|+.++++...|+++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 47888888888888888777766543
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.83 E-value=58 Score=24.82 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 143 LKNMETRLEKGISRIRSKKNELLFAE--IEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 143 L~~LE~~Le~~L~~Ir~rK~~ll~~~--i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
...|+..++..-+.+-+=|.++...+ ++.+.++...|.+++..|..++..++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444322 34444455555555555555554443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.13 E-value=1.1e+02 Score=28.10 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 168 EIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 168 ~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+++..+++...+.+++..++.++.+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554433
No 21
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=57.80 E-value=60 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNEL 164 (244)
Q Consensus 133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~l 164 (244)
-+++++|.++|+++-..|-..+..+-+-|+.+
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 36899999999999999999999999988866
No 22
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=57.64 E-value=36 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
++|++|+..+-...+.+-..+..+ .+++.+++..+.++...|+.....|..++...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR-LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899888876544332222222 346777778888888888777777777765433
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.50 E-value=81 Score=25.46 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 168 EIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 168 ~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+|..|++....|...+..|...|.+++.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777765543
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.20 E-value=42 Score=21.84 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 156 RIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 156 ~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+-|.||.+ .+..|..+...|..+|..|..++..+..
T Consensus 16 rcR~rKk~----~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 16 KCRNRRRE----LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 4578888888999999999888876554
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=53.80 E-value=56 Score=26.20 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEKGISRIRSKKNELL 165 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll 165 (244)
+|++||.++|+++-..|-..+..+-+-|+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 78999999999999999999999999988763
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.84 E-value=20 Score=22.84 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
.|..+...|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666666666666653
No 27
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.70 E-value=56 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNEL 164 (244)
Q Consensus 133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~l 164 (244)
-++++||.++|+++-..|-..+..+-+-|+.+
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 37899999999999999999999999988865
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.64 E-value=45 Score=21.45 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 155 SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 155 ~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
.+.|.||.+ .+..|..+...|..+|..|..++..+..
T Consensus 14 ~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 14 SRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556653 4578888888888899888888876654
No 29
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=50.68 E-value=9.2 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=29.4
Q ss_pred hhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhcc
Q 036452 48 LKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATA 93 (244)
Q Consensus 48 ~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~ 93 (244)
+|+|+|.+.+++=|.|++.|. ++-+-|+||...+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 689999999999998888874 67778899987664
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.30 E-value=1.4e+02 Score=26.75 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=6.3
Q ss_pred hhhhHHHHh
Q 036452 81 VKSTIDRYK 89 (244)
Q Consensus 81 m~~iieRY~ 89 (244)
|+.+|++..
T Consensus 54 Lqg~Ldk~e 62 (390)
T 1deq_A 54 MKGLIDEVD 62 (390)
T ss_pred HHHHHHHhh
Confidence 777777764
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.16 E-value=53 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 036452 139 NFKELKNMETRLEKGISRIRSKKNELL--FAEIEYMQKR 175 (244)
Q Consensus 139 s~~EL~~LE~~Le~~L~~Ir~rK~~ll--~~~i~~l~kk 175 (244)
+.+|+..|.+.++..-..+...-.+++ +++++.++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888877666655544432 3444444433
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.32 E-value=51 Score=21.31 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 155 SRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 155 ~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
.+-|.||.+ .+..|..+...|..+|..|..++..+...
T Consensus 14 ~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 14 SKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555543 45889999999999999999998776543
No 33
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=48.36 E-value=48 Score=20.80 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 179 (244)
Q Consensus 140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l 179 (244)
+++|..||.+.- .-|+++..+.+..++++...+
T Consensus 12 ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 356666664443 337777777777777765443
No 34
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=48.22 E-value=58 Score=23.79 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEKGISRIRSKKNEL 164 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~l 164 (244)
+|++||.++|+++-..|-..+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6899999999999999999999999988866
No 35
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.89 E-value=73 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 036452 178 DLHNSNQLLRAKI 190 (244)
Q Consensus 178 ~l~een~~L~~~~ 190 (244)
.|+.|+..|+..+
T Consensus 79 ~Lq~E~erLr~~v 91 (100)
T 1go4_E 79 QLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.89 E-value=44 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 167 AEIEYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 167 ~~i~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
+++..++++...|+.||..|++.+..++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888776653
No 37
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.43 E-value=28 Score=18.47 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHhhhc
Q 036452 109 YQQEAAKLRIQISNMQNSNR 128 (244)
Q Consensus 109 lq~ei~kLk~~i~~L~~~~r 128 (244)
+..|++.|++.+.+|++..|
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666665443
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.75 E-value=65 Score=20.98 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 168 EIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 168 ~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
.+..|..+...|..+|..|..++..+..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777765543
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.96 E-value=84 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
..+..+...|+.+|..|+.+|.++..
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777888888877776554
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.51 E-value=1.9e+02 Score=25.93 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452 165 LFAEIEYMQKREVDLHNSNQLLRAKIAENER 195 (244)
Q Consensus 165 l~~~i~~l~kke~~l~een~~L~~~~~~~~~ 195 (244)
+....+..+..+..+.++|..+++.+++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 3344566677777777788888777776543
No 41
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=42.36 E-value=1.5e+02 Score=24.78 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+.|+..|..+-..+..-|.-+--||. +...+|..+-.|...|..-...+..+|+.++
T Consensus 148 SYSl~~Lkk~~~~i~~~LelL~IRK~-ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 148 SYSPSALKSFSQTLVNSLEFLNIQKN-STLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777787777777777776666665 6677777777777777666666666665443
No 42
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.52 E-value=84 Score=21.61 Aligned_cols=54 Identities=7% Similarity=0.171 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGIS-RIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~-~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
++|++|+..+-...+..-. .+. .-..++.+++..+..+...|+..-..|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~-~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQ-ESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887654431100 111 22346677777777777777766666665554
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.64 E-value=74 Score=20.71 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
-+..+...|+.+...|+.|+..|+..|.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666666666666665554
No 44
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.94 E-value=62 Score=19.36 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 036452 136 SGLNFKELKNMETRLEKGISRI 157 (244)
Q Consensus 136 ~~Ls~~EL~~LE~~Le~~L~~I 157 (244)
+++|.+||-.||..|...-+++
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999998876554333
No 45
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=38.12 E-value=1.2e+02 Score=22.42 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 036452 108 FYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIE--YMQKREVDLHNSNQL 185 (244)
Q Consensus 108 ~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~--~l~kke~~l~een~~ 185 (244)
-++.|+++|+...+.+.+..-. --.+|....|.-+..|+ +|+.++..+++ .++++-..-...+..
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~------------kklqLkse~e~E~ae~k-~KYD~~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEE------------KKSILKAELERKMAEVQ-AEFRRKFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888777666543311 14566666777777777 56666665555 444443322234444
Q ss_pred HHHH
Q 036452 186 LRAK 189 (244)
Q Consensus 186 L~~~ 189 (244)
+..+
T Consensus 103 ~mNk 106 (115)
T 3vem_A 103 IMNK 106 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 46
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.43 E-value=53 Score=27.77 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 141 KELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 141 ~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L 186 (244)
+.+.+|+.+++.. ..|++.+.+.+..++++...|.+|+..|
T Consensus 54 ~~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455565555443 2344445555566666666666655554
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.83 E-value=50 Score=19.44 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 036452 170 EYMQKREVDLHNSN 183 (244)
Q Consensus 170 ~~l~kke~~l~een 183 (244)
..++.+...|.+|.
T Consensus 18 ~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 18 LKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 48
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.76 E-value=43 Score=18.28 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036452 176 EVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 176 e~~l~een~~L~~~~~~~ 193 (244)
...|+.+|+.|+.+++++
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888887764
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.97 E-value=1e+02 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036452 170 EYMQKREVDLHNSNQLLRAKIAENERG 196 (244)
Q Consensus 170 ~~l~kke~~l~een~~L~~~~~~~~~~ 196 (244)
..+..+...|..+|..|+.++..+...
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888898888888776543
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.02 E-value=3.2e+02 Score=27.77 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 036452 166 FAEIEYMQ 173 (244)
Q Consensus 166 ~~~i~~l~ 173 (244)
.+|++.+.
T Consensus 1036 ~qq~~~l~ 1043 (1080)
T 2dfs_A 1036 KTEKEELN 1043 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.36 E-value=89 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036452 165 LFAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 165 l~~~i~~l~kke~~l~een~~L 186 (244)
+..+...|+.....|..++..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777777777766554
No 52
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.72 E-value=80 Score=19.09 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNS 182 (244)
Q Consensus 138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~ee 182 (244)
+|-+||.|=-..++.-+..++ ++|..+++|.+.|++.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Confidence 444566555555555444443 3456788888777764
No 53
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=31.98 E-value=81 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 167 AEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 167 ~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
+-|..|+.+...|.+++..|+..+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677888889999999988887644
No 54
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.63 E-value=1.9e+02 Score=22.49 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 139 NFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLL 186 (244)
Q Consensus 139 s~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L 186 (244)
|+.|.+.||..-...+.+|+.++.+| .++...+.--+.|.+-|+.+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~ 48 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHA 48 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998777654 12222222234555555554
No 55
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=28.97 E-value=28 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=22.6
Q ss_pred cccceeeEeeecCCccccccCc-chhhhHHHHhh
Q 036452 58 CDAEVSLIVFSSRGRLYEYSNN-SVKSTIDRYKK 90 (244)
Q Consensus 58 CdaeValIifS~~gkl~~f~s~-sm~~iieRY~~ 90 (244)
|+-.-.|+|+ |+|..|...++ .+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5444445555 88988877777 69999999753
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.37 E-value=3.7e+02 Score=25.14 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=5.1
Q ss_pred hhhhHHHHh
Q 036452 81 VKSTIDRYK 89 (244)
Q Consensus 81 m~~iieRY~ 89 (244)
|+.+|++..
T Consensus 51 LQglLdkqE 59 (562)
T 3ghg_A 51 MKGLIDEVN 59 (562)
T ss_dssp HHHHHHHHH
T ss_pred hhhhHHhhc
Confidence 666666543
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.70 E-value=1.3e+02 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 164 LLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 164 ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
.+..+...|+.+...|.+++..|+..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666677777777766554
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.17 E-value=4.1e+02 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~~ 191 (244)
++.+...++++..+++...++++...++++++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 34444455554544444444455555555443
No 59
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.11 E-value=82 Score=25.27 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036452 167 AEIEYMQKREVDLHNSNQLLRAK 189 (244)
Q Consensus 167 ~~i~~l~kke~~l~een~~L~~~ 189 (244)
++|..|+.+...|++||.+|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577888888999999998654
No 60
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.19 E-value=1.3e+02 Score=18.88 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 036452 172 MQKREVDLHNSNQLLRAKIAE 192 (244)
Q Consensus 172 l~kke~~l~een~~L~~~~~~ 192 (244)
|-+++..|..||..|++++..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHh
Confidence 334444455556666655543
No 61
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.09 E-value=1.7e+02 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 156 RIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 156 ~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
.|..+|.+++ +.|++|...|.++...|...+...
T Consensus 12 ~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N 45 (190)
T 3thf_A 12 LIKQKMDELI----KHLNQKIVSLKREQQTISEECSAN 45 (190)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677887775 778888888888888887776543
No 62
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.92 E-value=88 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 036452 134 SLSGLNFKELKNMETRLEKG 153 (244)
Q Consensus 134 ~L~~Ls~~EL~~LE~~Le~~ 153 (244)
-|..||++||++.-..|+..
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~ 25 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPM 25 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHH
Confidence 35678999998866555443
No 63
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.86 E-value=2e+02 Score=20.00 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=27.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 129 NMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 129 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
.+.|+-+-..+.++... .+..++. -+...|+.+.++...++.+-..|+..+
T Consensus 52 ~~iG~vfv~~~~~e~~~----------~L~~~~e-~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 52 KSSGNILIRVAKDELTE----------ELQEKLE-TLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp EEETTEEEEECHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhccHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676665556555432 2222222 334566666666666666655555554
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.42 E-value=2.4e+02 Score=20.88 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452 146 METRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 146 LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~ 194 (244)
|-..|+.-.... ..+.+-+..+|..|..+.+....+-..|++..+...
T Consensus 58 L~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 58 LMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 334444433333 234556678888888888888888888887766544
No 65
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.94 E-value=55 Score=24.10 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036452 169 IEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~ 190 (244)
++.|..+...|+=||+.|++++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.37 E-value=2.2e+02 Score=19.95 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 160 KKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193 (244)
Q Consensus 160 rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~ 193 (244)
+-..++..+|..|+++...+..++..|.-++...
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999888888888887766543
No 67
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.24 E-value=2.2e+02 Score=20.97 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452 137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 190 (244)
Q Consensus 137 ~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~ 190 (244)
++|++|...+-...+..-.... .-.+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHSA-DVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777887776554322100011 1124556666666666666666555555444
No 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.01 E-value=1.7e+02 Score=20.15 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 036452 172 MQKREVDLHNSNQLLRAKIAENE 194 (244)
Q Consensus 172 l~kke~~l~een~~L~~~~~~~~ 194 (244)
+......|..+|..|+.+|.++.
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334456677777777776543
No 69
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=20.35 E-value=17 Score=26.73 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=32.1
Q ss_pred ecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccc
Q 036452 30 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY 76 (244)
Q Consensus 30 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f 76 (244)
|.++.-...||-=.-.-|.+|.-+||.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 45555666777777888889999999665 7899999986554
No 70
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=20.27 E-value=22 Score=30.01 Aligned_cols=16 Identities=44% Similarity=0.833 Sum_probs=10.8
Q ss_pred cceeeEeeecCCcccc
Q 036452 60 AEVSLIVFSSRGRLYE 75 (244)
Q Consensus 60 aeValIifS~~gkl~~ 75 (244)
-|-++-+|||.|+||.
T Consensus 12 yd~~~t~fSp~Grl~Q 27 (264)
T 3h4p_A 12 YDRAITVFSPEGRLYQ 27 (264)
T ss_dssp ----CCCCCSSSSCHH
T ss_pred cCCCcceECCCCeeHH
Confidence 4667789999999984
No 71
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.27 E-value=1.3e+02 Score=20.29 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036452 169 IEYMQKREVDLHNSNQLLRAKIA 191 (244)
Q Consensus 169 i~~l~kke~~l~een~~L~~~~~ 191 (244)
+..|+.....|..+|..|..++.
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666655553
No 72
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.13 E-value=1.9e+02 Score=19.67 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 036452 111 QEAAKLRIQISNMQNSNRN 129 (244)
Q Consensus 111 ~ei~kLk~~i~~L~~~~r~ 129 (244)
..-..|+.-+..|+.....
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~ 29 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPL 29 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4445667777777765543
Done!