Query 036454
Match_columns 410
No_of_seqs 157 out of 1728
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.2E-23 4.7E-28 221.9 19.9 59 329-390 451-509 (968)
2 PLN00113 leucine-rich repeat r 99.9 2E-23 4.4E-28 222.2 18.4 365 3-392 123-535 (968)
3 PLN03210 Resistant to P. syrin 99.9 3.6E-22 7.8E-27 213.6 18.1 295 19-370 611-907 (1153)
4 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.3E-26 209.9 20.3 335 13-393 552-906 (1153)
5 KOG4194 Membrane glycoprotein 99.9 2.4E-22 5.2E-27 187.1 4.2 329 19-388 78-447 (873)
6 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.3E-26 181.8 4.7 314 46-390 77-426 (873)
7 KOG0444 Cytoskeletal regulator 99.7 1.4E-20 3E-25 176.8 -6.7 330 14-391 27-373 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.5E-19 3.2E-24 170.0 -6.4 316 14-373 50-379 (1255)
9 KOG0618 Serine/threonine phosp 99.7 4.9E-18 1.1E-22 166.4 -3.3 356 3-393 50-489 (1081)
10 KOG0472 Leucine-rich repeat pr 99.6 1.1E-17 2.4E-22 149.8 -8.9 344 15-390 64-538 (565)
11 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 138.4 13.9 72 47-142 201-272 (788)
12 PRK15387 E3 ubiquitin-protein 99.5 2.7E-13 5.8E-18 136.6 13.2 248 20-340 202-455 (788)
13 KOG0472 Leucine-rich repeat pr 99.4 2E-15 4.3E-20 135.5 -5.6 148 40-206 153-312 (565)
14 KOG0618 Serine/threonine phosp 99.4 1.1E-14 2.3E-19 143.4 -3.3 236 106-369 241-489 (1081)
15 KOG4341 F-box protein containi 99.4 5.2E-15 1.1E-19 133.6 -6.1 146 219-370 293-440 (483)
16 PRK15370 E3 ubiquitin-protein 99.2 2.6E-11 5.6E-16 122.9 9.3 53 249-310 325-377 (754)
17 PRK15370 E3 ubiquitin-protein 99.2 5E-11 1.1E-15 120.9 9.1 240 19-311 178-426 (754)
18 KOG4341 F-box protein containi 99.2 9.2E-13 2E-17 119.2 -3.5 310 19-364 138-460 (483)
19 KOG4658 Apoptotic ATPase [Sign 99.2 2.5E-11 5.4E-16 125.0 5.7 214 43-291 567-787 (889)
20 KOG4658 Apoptotic ATPase [Sign 99.2 3.6E-11 7.9E-16 123.8 6.5 305 18-374 522-847 (889)
21 cd00116 LRR_RI Leucine-rich re 99.1 6.9E-11 1.5E-15 110.1 3.0 13 45-57 21-33 (319)
22 cd00116 LRR_RI Leucine-rich re 99.0 6.1E-11 1.3E-15 110.4 0.6 15 102-116 19-33 (319)
23 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 104.5 0.1 199 45-260 119-337 (505)
24 KOG4237 Extracellular matrix p 98.9 1E-10 2.2E-15 105.5 -3.1 237 19-284 67-356 (498)
25 KOG0617 Ras suppressor protein 98.8 1.7E-10 3.7E-15 92.5 -2.8 160 15-208 29-190 (264)
26 KOG2120 SCF ubiquitin ligase, 98.7 2.4E-10 5.2E-15 99.5 -5.4 187 167-369 185-376 (419)
27 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 6.9E-14 97.2 1.4 186 166-363 145-333 (505)
28 KOG2120 SCF ubiquitin ligase, 98.7 1E-09 2.3E-14 95.6 -2.3 215 1-260 139-374 (419)
29 KOG4237 Extracellular matrix p 98.7 1E-09 2.2E-14 99.1 -3.3 70 47-127 67-136 (498)
30 KOG0617 Ras suppressor protein 98.7 7.2E-10 1.6E-14 88.9 -3.9 141 41-208 27-167 (264)
31 KOG1259 Nischarin, modulator o 98.6 3.3E-08 7.1E-13 86.5 2.8 127 167-311 284-410 (490)
32 PF14580 LRR_9: Leucine-rich r 98.4 1.5E-07 3.3E-12 78.3 2.2 132 15-199 15-148 (175)
33 PF14580 LRR_9: Leucine-rich r 98.3 3.3E-07 7.2E-12 76.2 3.5 63 245-310 60-123 (175)
34 PRK15386 type III secretion pr 98.3 4.8E-06 1E-10 77.9 9.7 140 187-366 48-187 (426)
35 KOG1259 Nischarin, modulator o 98.2 2.8E-07 6E-12 80.8 0.8 128 188-341 281-410 (490)
36 PRK15386 type III secretion pr 98.2 3.3E-06 7.1E-11 79.0 7.0 134 218-389 50-186 (426)
37 KOG2982 Uncharacterized conser 98.2 1.7E-06 3.6E-11 75.9 4.1 190 166-374 70-267 (418)
38 KOG1947 Leucine rich repeat pr 98.1 2.8E-07 6.1E-12 90.8 -1.7 39 332-370 403-441 (482)
39 PF13855 LRR_8: Leucine rich r 98.0 1.4E-05 2.9E-10 54.4 5.7 59 47-116 1-59 (61)
40 KOG1909 Ran GTPase-activating 98.0 3.4E-06 7.5E-11 75.6 2.0 15 70-84 27-41 (382)
41 PF13855 LRR_8: Leucine rich r 97.9 3.2E-05 6.9E-10 52.6 5.4 59 73-142 1-59 (61)
42 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.4E-10 71.0 2.4 87 46-142 44-131 (418)
43 COG4886 Leucine-rich repeat (L 97.8 2.5E-05 5.5E-10 75.0 4.8 171 71-284 114-287 (394)
44 KOG1909 Ran GTPase-activating 97.7 1.6E-06 3.5E-11 77.6 -4.3 70 13-84 52-131 (382)
45 COG4886 Leucine-rich repeat (L 97.7 5.3E-05 1.2E-09 72.8 5.5 174 102-310 112-287 (394)
46 KOG3665 ZYG-1-like serine/thre 97.6 2.1E-05 4.5E-10 79.7 2.0 124 106-229 122-259 (699)
47 KOG0531 Protein phosphatase 1, 97.6 7E-06 1.5E-10 79.2 -1.6 81 15-116 91-172 (414)
48 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4.1E-10 80.1 1.0 94 103-200 170-284 (699)
49 KOG1947 Leucine rich repeat pr 97.6 6.7E-06 1.5E-10 81.0 -2.5 139 166-310 187-331 (482)
50 KOG0532 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 76.1 -4.2 148 40-205 91-248 (722)
51 KOG0532 Leucine-rich repeat (L 97.2 1.7E-05 3.6E-10 75.7 -4.6 99 148-260 145-245 (722)
52 KOG1859 Leucine-rich repeat pr 97.1 3.3E-05 7.2E-10 75.8 -3.4 39 166-206 186-224 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.1 0.00063 1.4E-08 42.5 3.3 38 48-89 2-39 (44)
54 PLN03150 hypothetical protein; 96.9 0.0025 5.3E-08 64.8 7.3 112 250-373 419-532 (623)
55 PF12799 LRR_4: Leucine Rich r 96.8 0.0013 2.8E-08 41.1 3.1 39 249-290 1-39 (44)
56 KOG0531 Protein phosphatase 1, 96.8 0.00016 3.5E-09 69.8 -2.0 61 145-206 139-201 (414)
57 KOG1859 Leucine-rich repeat pr 96.7 9.2E-05 2E-09 72.8 -4.0 103 145-260 186-290 (1096)
58 PLN03150 hypothetical protein; 96.6 0.0044 9.6E-08 63.0 6.5 109 221-343 419-528 (623)
59 KOG3864 Uncharacterized conser 96.4 0.00046 9.9E-09 57.6 -1.7 89 251-345 103-191 (221)
60 KOG2123 Uncharacterized conser 96.2 0.00031 6.7E-09 61.5 -3.5 86 143-228 38-125 (388)
61 KOG2739 Leucine-rich acidic nu 95.9 0.0039 8.5E-08 54.3 1.7 110 190-312 42-155 (260)
62 KOG3864 Uncharacterized conser 95.8 0.00082 1.8E-08 56.1 -2.6 69 296-369 121-189 (221)
63 KOG1644 U2-associated snRNP A' 95.8 0.017 3.6E-07 48.5 4.9 13 297-309 137-149 (233)
64 KOG1644 U2-associated snRNP A' 95.8 0.017 3.8E-07 48.4 4.8 56 47-116 42-98 (233)
65 KOG2123 Uncharacterized conser 95.4 0.00075 1.6E-08 59.1 -4.5 83 18-118 18-100 (388)
66 KOG2739 Leucine-rich acidic nu 94.9 0.012 2.5E-07 51.4 1.3 12 105-116 90-101 (260)
67 KOG4579 Leucine-rich repeat (L 92.5 0.016 3.5E-07 45.6 -1.9 59 146-205 53-114 (177)
68 PF13306 LRR_5: Leucine rich r 91.5 1.1 2.3E-05 35.1 7.6 61 186-258 7-67 (129)
69 KOG4579 Leucine-rich repeat (L 90.3 0.034 7.3E-07 43.8 -2.1 87 250-347 28-116 (177)
70 PF13504 LRR_7: Leucine rich r 90.3 0.2 4.4E-06 24.0 1.4 11 357-367 2-12 (17)
71 PF13306 LRR_5: Leucine rich r 90.1 1.6 3.4E-05 34.0 7.4 58 45-115 10-67 (129)
72 COG5238 RNA1 Ran GTPase-activa 87.7 0.25 5.4E-06 43.7 1.1 203 13-229 52-281 (388)
73 COG5238 RNA1 Ran GTPase-activa 87.5 0.72 1.6E-05 40.9 3.7 14 146-159 157-170 (388)
74 PF00560 LRR_1: Leucine Rich R 87.1 0.45 9.7E-06 24.5 1.5 9 251-259 2-10 (22)
75 smart00367 LRR_CC Leucine-rich 86.0 0.46 1E-05 25.6 1.2 17 330-346 2-18 (26)
76 smart00369 LRR_TYP Leucine-ric 55.3 7.5 0.00016 20.6 1.1 17 191-207 2-18 (26)
77 smart00370 LRR Leucine-rich re 55.3 7.5 0.00016 20.6 1.1 17 191-207 2-18 (26)
78 PF13516 LRR_6: Leucine Rich r 47.3 11 0.00024 19.5 1.0 11 249-259 2-12 (24)
79 smart00365 LRR_SD22 Leucine-ri 37.1 23 0.00049 19.1 1.2 16 191-206 2-17 (26)
80 KOG3763 mRNA export factor TAP 33.9 18 0.00038 35.7 0.7 84 188-280 215-307 (585)
81 smart00364 LRR_BAC Leucine-ric 33.0 26 0.00056 19.0 1.0 17 249-267 2-18 (26)
82 KOG3763 mRNA export factor TAP 32.5 22 0.00048 35.1 1.1 68 45-122 216-286 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.2e-23 Score=221.94 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=29.7
Q ss_pred ccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+++|+.|++++|.-...++.. ...++|+.|++++|.....+|..+..+++|++|++++|
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCCCcEEECcCceeeeecCcc---cccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 445555555554332222211 12355666666665444455555555666777766533
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2e-23 Score=222.16 Aligned_cols=365 Identities=16% Similarity=0.077 Sum_probs=186.7
Q ss_pred ccccccCc-cccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454 3 FDLQEVNS-EETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK 81 (410)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 81 (410)
++++.+.. +..+.+.+++|++|+++++.....+ |..++.+++|++|++++|.....+ |..+ +++++|++|+++
T Consensus 123 L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~ 196 (968)
T PLN00113 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI----PNDIGSFSSLKVLDLGGNVLVGKI-PNSL-TNLTSLEFLTLA 196 (968)
T ss_pred EECcCCccccccCccccCCCCEEECcCCcccccC----ChHHhcCCCCCEEECccCcccccC-Chhh-hhCcCCCeeecc
Confidence 45555433 3455566788888888776421122 556667777888887777333223 3333 577777777777
Q ss_pred cccCcceEeccCC---------------CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----
Q 036454 82 DCGSVEEIVANDG---------------RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---- 142 (410)
Q Consensus 82 ~~~~l~~~~~~~~---------------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---- 142 (410)
+|.-...+|.... .+.....+..+++|++|+++++......+... ..+++|++|++.++
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeec
Confidence 7652223333000 00111123344444555444442111111111 13445555555444
Q ss_pred ------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhh
Q 036454 143 ------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVE 213 (410)
Q Consensus 143 ------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 213 (410)
..+++|++|++++|......+.. +++|+.|++..+.........+..+++|+.|++++|.+....+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----- 349 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP----- 349 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-----
Confidence 12344555555555444333221 4455555553332222222334455555555555554432211
Q ss_pred ccccccCcccEEEeCCccccc-------------------ccccCCCCccccccccceEEEEecccccccccccCccccC
Q 036454 214 EHAEGIAQIKSLKLKKLWLIE-------------------EHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFR 274 (410)
Q Consensus 214 ~~~~~l~~L~~L~l~~c~~l~-------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~ 274 (410)
..+..+++|+.|+++++...+ +.+....+..+..+++|+.|++.+|. ....++..+..++
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~ 428 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLP 428 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhHhcCC
Confidence 122334555555555432110 00100111223345555556655553 2223444445556
Q ss_pred ccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccC
Q 036454 275 NLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFS 354 (410)
Q Consensus 275 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 354 (410)
+|+.|+++++. +..... .....+++|+.|++++|.-...++... . .++|+.|+++++.-....+. .+..
T Consensus 429 ~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~-~------~~~L~~L~ls~n~l~~~~~~--~~~~ 497 (968)
T PLN00113 429 LVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSF-G------SKRLENLDLSRNQFSGAVPR--KLGS 497 (968)
T ss_pred CCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCccc-c------cccceEEECcCCccCCccCh--hhhh
Confidence 66666665542 322211 223456778888887775544444332 2 57899999999753333332 2346
Q ss_pred CCCccEEEEecCCCCcccCCCCCCCCCcceeEecccch
Q 036454 355 FPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGE 392 (410)
Q Consensus 355 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~ 392 (410)
+++|++|++++|.-...+|..+..+++|++|+++.|.-
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 88999999999876667888888899999999985543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3.6e-22 Score=213.59 Aligned_cols=295 Identities=20% Similarity=0.275 Sum_probs=135.5
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
.+|+.|++.++ .++.+| .++..+++|++|+++++..+..++.. ..+++|++|++++|..+..+|.
T Consensus 611 ~~L~~L~L~~s-~l~~L~----~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~------- 675 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLW----DGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPS------- 675 (1153)
T ss_pred cCCcEEECcCc-cccccc----cccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccch-------
Confidence 34555555544 344443 23335666666666666555555433 4566666666666665666655
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCC
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDG 178 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~ 178 (410)
.+..+++|+.|++++|..+..+|... .+++|+.|++++| ......+....+|+.|++....
T Consensus 676 --si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc--------------~~L~~~p~~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 676 --SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGC--------------SRLKSFPDISTNISWLDLDETA 736 (1153)
T ss_pred --hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCC--------------CCccccccccCCcCeeecCCCc
Confidence 55566666666666666666555433 3456666666655 2222222223344444443333
Q ss_pred CccchhhhhhhcccCceEEEecccccccccc--chhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEE
Q 036454 179 SDFFQVGLLQNIHNLEKLVLSTCEYKKIFSC--EEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEV 256 (410)
Q Consensus 179 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l 256 (410)
+..+|.. ..+++|+.|.+.++....+... ...+.....+++|+.|++++|+.+ ..+ +..+..+++|+.|++
T Consensus 737 i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-~~l----P~si~~L~~L~~L~L 809 (1153)
T PLN03210 737 IEEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-VEL----PSSIQNLHKLEHLEI 809 (1153)
T ss_pred ccccccc--ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-ccc----ChhhhCCCCCCEEEC
Confidence 3333321 1234444444443221111000 000000112244555555554433 222 222344455555555
Q ss_pred ecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceee
Q 036454 257 KKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLF 336 (410)
Q Consensus 257 ~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (410)
++|. .+..+|... .+++|++|++++|..+..++ ...++|++|++++ +.++.+|..++. +++|+.|+
T Consensus 810 s~C~-~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-----~~~~nL~~L~Ls~-n~i~~iP~si~~------l~~L~~L~ 875 (1153)
T PLN03210 810 ENCI-NLETLPTGI-NLESLESLDLSGCSRLRTFP-----DISTNISDLNLSR-TGIEEVPWWIEK------FSNLSFLD 875 (1153)
T ss_pred CCCC-CcCeeCCCC-CccccCEEECCCCCcccccc-----ccccccCEeECCC-CCCccChHHHhc------CCCCCEEE
Confidence 5554 444444322 34455555555554444443 1223455555544 244444444444 45555555
Q ss_pred cCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454 337 LESSESITSFCSGNYAFSFPSLEDLIVENCPKLN 370 (410)
Q Consensus 337 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 370 (410)
+.+|++++.++... ..+++|+.+++.+|+++.
T Consensus 876 L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 876 MNGCNNLQRVSLNI--SKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCCcCccCccc--ccccCCCeeecCCCcccc
Confidence 55555555444322 224445555555554443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.1e-21 Score=209.94 Aligned_cols=335 Identities=19% Similarity=0.195 Sum_probs=249.5
Q ss_pred cccccccCCcEEEecCcc--ccccccccCCccccccC-cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceE
Q 036454 13 THSGAATQLRELHVFHLP--KLTKLWNKDPQGKLIFR-NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEI 89 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 89 (410)
.....|++|+.|.+.... .....-...|.++..+| +||.|++.++ .++.+|.. -...+|++|+++++. ++.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~---f~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSN---FRPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCc---CCccCCcEEECcCcc-cccc
Confidence 346679999999986542 11111112255565654 6999999987 56666554 256899999999986 8888
Q ss_pred eccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcc
Q 036454 90 VANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFT 159 (410)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~ 159 (410)
+. .+..+++|+.|+++++..+..++.. ..+++|++|++.+| ..+++|+.|++++|...
T Consensus 627 ~~---------~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 627 WD---------GVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cc---------ccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 76 6678899999999998777777642 35799999999998 34578889999988655
Q ss_pred cccccc--cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454 160 TWRQAQ--FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH 236 (410)
Q Consensus 160 ~~~~~~--l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 236 (410)
...+.. +++|+.|++ .+.....+|. ..++|+.|.++++.+..++. ...+++|++|.+.++... .
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~-------~~~l~~L~~L~l~~~~~~--~ 761 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS-------NLRLENLDELILCEMKSE--K 761 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc-------cccccccccccccccchh--h
Confidence 444433 788999998 4444444442 24688999999888766654 335788999988875432 1
Q ss_pred ccCCC----CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcc
Q 036454 237 LWNPD----SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNR 312 (410)
Q Consensus 237 ~~~~~----~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 312 (410)
++... ......+++|+.|++++|. .+..+|..++.+++|+.|++++|.+++.+|.. ..+++|+.|++++|..
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSR 837 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCc
Confidence 11100 1112345799999999998 88889888899999999999999999888742 2689999999999998
Q ss_pred cchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccch
Q 036454 313 LEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGE 392 (410)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~ 392 (410)
+..++.. .++|+.|++.+ +.++.++... ..+++|++|++.+|++++.+|....++++|+.++++++..
T Consensus 838 L~~~p~~---------~~nL~~L~Ls~-n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 838 LRTFPDI---------STNISDLNLSR-TGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccccccc---------ccccCEeECCC-CCCccChHHH--hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 8777642 56899999998 4677776543 4699999999999999999998888899999999986653
Q ss_pred h
Q 036454 393 D 393 (410)
Q Consensus 393 ~ 393 (410)
.
T Consensus 906 L 906 (1153)
T PLN03210 906 L 906 (1153)
T ss_pred c
Confidence 3
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.4e-22 Score=187.09 Aligned_cols=329 Identities=18% Similarity=0.167 Sum_probs=162.5
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
+..+.|++++. .+..+ .+.+|-.+++|+.+++..+ -+..+|..+ +-..||+.|++.++. +..+..
T Consensus 78 ~~t~~LdlsnN-kl~~i---d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~--~~sghl~~L~L~~N~-I~sv~s------- 142 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHI---DFEFFYNLPNLQEVNLNKN-ELTRIPRFG--HESGHLEKLDLRHNL-ISSVTS------- 142 (873)
T ss_pred cceeeeecccc-ccccC---cHHHHhcCCcceeeeeccc-hhhhccccc--ccccceeEEeeeccc-cccccH-------
Confidence 44455666665 23321 1344456666666666655 444454442 334456666666553 433332
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ--- 165 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~--- 165 (410)
+.+..++.|+.||||.+ .+.+++...++ +-.++++|++.++ ..+.+|..|.+++|++...++..
T Consensus 143 -e~L~~l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 143 -EELSALPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR 219 (873)
T ss_pred -HHHHhHhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh
Confidence 24444555666666554 44444433322 2345555555554 33345555555555555544433
Q ss_pred cccccEEEEEe------------------------CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCc
Q 036454 166 FHKLKILHFIS------------------------DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQ 221 (410)
Q Consensus 166 l~~L~~L~l~~------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 221 (410)
+++|+.|++.. +.+.......+..+.++++|+++.+++..+.. ....++..
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-----g~lfgLt~ 294 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-----GWLFGLTS 294 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-----ccccccch
Confidence 44455555533 33333333334444444444444444333322 12234455
Q ss_pred ccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCC
Q 036454 222 IKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLV 300 (410)
Q Consensus 222 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 300 (410)
|+.|+++. +.+.......-..+++|++|++++| .++++++ .+..+..|++|.+++. ++..+.. .....+.
T Consensus 295 L~~L~lS~-----NaI~rih~d~WsftqkL~~LdLs~N--~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~ls 365 (873)
T KOG4194|consen 295 LEQLDLSY-----NAIQRIHIDSWSFTQKLKELDLSSN--RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVGLS 365 (873)
T ss_pred hhhhccch-----hhhheeecchhhhcccceeEecccc--ccccCChhHHHHHHHhhhhccccc-chHHHHh-hHHHHhh
Confidence 55555554 2222112222234555666666655 4444432 2334455555665443 3444422 2334556
Q ss_pred CccEEEeccCcc---cchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCC
Q 036454 301 QLRELRVSECNR---LEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVL 377 (410)
Q Consensus 301 ~L~~L~l~~c~~---l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 377 (410)
+|++|++++..- +++-...+.+ +++|++|.+.+ ++++.++..+ +..+++|+.|++.+.+-...-|..+.
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~g------l~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNG------LPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhcc------chhhhheeecC-ceeeecchhh-hccCcccceecCCCCcceeecccccc
Confidence 677777665321 1222233333 77777777777 5677766553 44677777777766544443445554
Q ss_pred CCCCcceeEec
Q 036454 378 KTPRLQAVQNW 388 (410)
Q Consensus 378 ~~~~L~~l~~~ 388 (410)
.+ .|++|.+.
T Consensus 438 ~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 438 PM-ELKELVMN 447 (873)
T ss_pred cc-hhhhhhhc
Confidence 44 77777765
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-21 Score=181.82 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=216.7
Q ss_pred cCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccC
Q 036454 46 FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG 125 (410)
Q Consensus 46 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 125 (410)
.+.-+.|+++++ .+.++.+..+ .++|+|+++++.++. ++.+|. ......+|+.|+|..+ .+.++...
T Consensus 77 p~~t~~LdlsnN-kl~~id~~~f-~nl~nLq~v~l~~N~-Lt~IP~---------f~~~sghl~~L~L~~N-~I~sv~se 143 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFEFF-YNLPNLQEVNLNKNE-LTRIPR---------FGHESGHLEKLDLRHN-LISSVTSE 143 (873)
T ss_pred ccceeeeecccc-ccccCcHHHH-hcCCcceeeeeccch-hhhccc---------ccccccceeEEeeecc-ccccccHH
Confidence 455677999988 7777755444 799999999999987 999986 3333467999999887 66666655
Q ss_pred cccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhccc
Q 036454 126 MHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHN 192 (410)
Q Consensus 126 ~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~ 192 (410)
... .++.|+.|+++.+ +.-+++++|++++|++..+.... +.+|..|.+..+.++.+|...+..+++
T Consensus 144 ~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 554 7899999999888 33457999999999998887665 778889999999999999999999999
Q ss_pred CceEEEeccccccccccchhhccccccCcccEEEeCCc-------------cccc------ccccCCCCccccccccceE
Q 036454 193 LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL-------------WLIE------EHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-------------~~l~------~~~~~~~~~~~~~~~~L~~ 253 (410)
|+.|++..+.++.+ ....+.++++|+.|++..- .++| +.+..-...++-.+..|+.
T Consensus 223 L~~LdLnrN~iriv-----e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 223 LESLDLNRNRIRIV-----EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hhhhhccccceeee-----hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 99999999876655 1124667777777776541 1110 1110001123344566666
Q ss_pred EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454 254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL 332 (410)
Q Consensus 254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L 332 (410)
|++++| .+..+.. .....++|+.|++++. +++.+++ .....+..|++|.++. +.+..+....- ..+++|
T Consensus 298 L~lS~N--aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~e~af-----~~lssL 367 (873)
T KOG4194|consen 298 LDLSYN--AIQRIHIDSWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSH-NSIDHLAEGAF-----VGLSSL 367 (873)
T ss_pred hccchh--hhheeecchhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccc-cchHHHHhhHH-----HHhhhh
Confidence 667666 3444432 2345567777777554 5666654 3445567778888876 34444432211 127889
Q ss_pred ceeecCcCcccceecCC--CcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454 333 KWLFLESSESITSFCSG--NYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL 390 (410)
Q Consensus 333 ~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~ 390 (410)
++|+++. +++...... .-+..+|+|+.|++.+. +++++|.. +..+++|++|++-+|
T Consensus 368 ~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 368 HKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 9999987 445433211 12446999999999775 88888844 446899999999633
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=1.4e-20 Score=176.82 Aligned_cols=330 Identities=19% Similarity=0.217 Sum_probs=215.9
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce--Eec
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE--IVA 91 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~ 91 (410)
.+.+|.+++.|.+++. ++..+ |+.++.+.+|..|.+.++. +..+.. -...+|.|+.+.++.+. ++. +|.
T Consensus 27 ~v~qMt~~~WLkLnrt-~L~~v----PeEL~~lqkLEHLs~~HN~-L~~vhG--ELs~Lp~LRsv~~R~N~-LKnsGiP~ 97 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRT-KLEQV----PEELSRLQKLEHLSMAHNQ-LISVHG--ELSDLPRLRSVIVRDNN-LKNSGIPT 97 (1255)
T ss_pred hHHHhhheeEEEechh-hhhhC----hHHHHHHhhhhhhhhhhhh-hHhhhh--hhccchhhHHHhhhccc-cccCCCCc
Confidence 3667888888888886 55555 8888888999999988873 332211 12577888888888765 543 443
Q ss_pred cCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccc
Q 036454 92 NDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTW 161 (410)
Q Consensus 92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~ 161 (410)
.+..+.-|..||||.+ .+++.|.+. ..-.++-.|+++++ .++..|-.|+++.|+....
T Consensus 98 ---------diF~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 98 ---------DIFRLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred ---------hhcccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence 6677788888999887 777777654 34567777888777 3345566788888888888
Q ss_pred cccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc--cccccccchhhccccccCcccEEEeCCcccccccc
Q 036454 162 RQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE--YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHL 237 (410)
Q Consensus 162 ~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 237 (410)
+|.. +..|+.|+++.+....+...++..+++|+.|.+++.. ...++. +..++.||+.++++. +++
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt------sld~l~NL~dvDlS~-----N~L 234 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT------SLDDLHNLRDVDLSE-----NNL 234 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC------chhhhhhhhhccccc-----cCC
Confidence 8776 8888888888888777776666677777777777753 233333 455567777777765 333
Q ss_pred cCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc-ccchh
Q 036454 238 WNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN-RLEEI 316 (410)
Q Consensus 238 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~ 316 (410)
+. .++.+-.+++|+.|++++| .++.+.-..+.-.+|++|+++.. .++.+| .....++.|+.|.+.+.. ..+.+
T Consensus 235 p~-vPecly~l~~LrrLNLS~N--~iteL~~~~~~W~~lEtLNlSrN-QLt~LP--~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 235 PI-VPECLYKLRNLRRLNLSGN--KITELNMTEGEWENLETLNLSRN-QLTVLP--DAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred Cc-chHHHhhhhhhheeccCcC--ceeeeeccHHHHhhhhhhccccc-hhccch--HHHhhhHHHHHHHhccCcccccCC
Confidence 11 1344556677777777777 45555444455566777777654 466665 455666777776665432 23456
Q ss_pred ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccc
Q 036454 317 VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELG 391 (410)
Q Consensus 317 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~ 391 (410)
|.++|. +.+|+.+..++ +.++-.+.+. -.|+.|+.|.+ +|..+-++|++..-++-|+.|++.+|.
T Consensus 309 PSGIGK------L~~Levf~aan-N~LElVPEgl--cRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIGK------LIQLEVFHAAN-NKLELVPEGL--CRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccchhh------hhhhHHHHhhc-cccccCchhh--hhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCc
Confidence 666666 66666666665 4454444332 23667777766 455666677766666777777776443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=1.5e-19 Score=169.99 Aligned_cols=316 Identities=20% Similarity=0.213 Sum_probs=205.7
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
.++.+.+|+.|.+++. .+..+. ..+..+|.||.+.++.+.--..-.|..++ ++..|..||++.+. +++.|.
T Consensus 50 EL~~lqkLEHLs~~HN-~L~~vh----GELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq-L~EvP~-- 120 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHN-QLISVH----GELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ-LREVPT-- 120 (1255)
T ss_pred HHHHHhhhhhhhhhhh-hhHhhh----hhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh-hhhcch--
Confidence 3777888888888886 333332 22336777777777766322222233443 67777777777765 777776
Q ss_pred CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCccccccc
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQA 164 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~ 164 (410)
.+-.-+++-.|+||++ ++..+|...+. ++.-|-.|+++++ ..+..|++|.+++|+.....-.
T Consensus 121 -------~LE~AKn~iVLNLS~N-~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 121 -------NLEYAKNSIVLNLSYN-NIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred -------hhhhhcCcEEEEcccC-ccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 4444466667777765 55566554443 4555666666666 3345677777777776554433
Q ss_pred c---cccccEEEEEe--CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccC
Q 036454 165 Q---FHKLKILHFIS--DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN 239 (410)
Q Consensus 165 ~---l~~L~~L~l~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 239 (410)
. +.+|+.|.+++ .....+| ..+..+.+|..++++.+.+..++. ....+++|+.|++++ +.++.
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPe------cly~l~~LrrLNLS~-----N~ite 259 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIVPE------CLYKLRNLRRLNLSG-----NKITE 259 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcchH------HHhhhhhhheeccCc-----Cceee
Confidence 3 34455555522 2233444 345677788888888877766665 356678888888887 33311
Q ss_pred CCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc
Q 036454 240 PDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN 319 (410)
Q Consensus 240 ~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 319 (410)
. ....+...+|++|+++.| .++.+|...-.+++|+.|...+. .+..-...++++.+..|+.+...+ +.++-+|.+
T Consensus 260 L-~~~~~~W~~lEtLNlSrN--QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEg 334 (1255)
T KOG0444|consen 260 L-NMTEGEWENLETLNLSRN--QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEG 334 (1255)
T ss_pred e-eccHHHHhhhhhhccccc--hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccccCchh
Confidence 1 123455678888999888 78888877777888888877543 343333336778888888888876 577888887
Q ss_pred cCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccC
Q 036454 320 DGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFS 373 (410)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 373 (410)
+.. +++|+.|.+.. +.+-.++..+.. +|.|+.|++...|++..-|
T Consensus 335 lcR------C~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCR------CVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhh------hHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence 777 88999998876 566677766544 8899999999888886444
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4.9e-18 Score=166.38 Aligned_cols=356 Identities=21% Similarity=0.204 Sum_probs=200.2
Q ss_pred ccccccCccc--cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEee
Q 036454 3 FDLQEVNSEE--THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSI 80 (410)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 80 (410)
+|++.+.... .++..+++|++|.++.. .++.+ |..+.++.+|+++.|.++ .+..+ |.++ ..+.+|++|++
T Consensus 50 l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~v----p~s~~~~~~l~~lnL~~n-~l~~l-P~~~-~~lknl~~Ldl 121 (1081)
T KOG0618|consen 50 LDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSV----PSSCSNMRNLQYLNLKNN-RLQSL-PASI-SELKNLQYLDL 121 (1081)
T ss_pred eeccccccccCCchhhhHHHHhhcccchh-hHhhC----chhhhhhhcchhheeccc-hhhcC-chhH-Hhhhccccccc
Confidence 4555554444 34666777777777765 33333 566667888888888755 34333 5454 46778888888
Q ss_pred ccccCcceEeccC----------CCCC--------C-------------CcccccCCCccE-EeeccCCCcccccc----
Q 036454 81 KDCGSVEEIVAND----------GRGN--------D-------------AATKFIFPSLTF-LRLRDLPDLTTFYS---- 124 (410)
Q Consensus 81 ~~~~~l~~~~~~~----------~~~~--------~-------------~~~~~~l~~L~~-L~l~~~~~l~~~~~---- 124 (410)
+++. ...+|.-- ..+. . ...+.....+++ |++.++... ....
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~ 199 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLA 199 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhcc
Confidence 7764 43333300 0000 0 000011122333 444443221 0000
Q ss_pred --CcccCCCCCceEEEEcc----------C--------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccc
Q 036454 125 --GMHILECPELRKLEVNH----------V--------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFF 182 (410)
Q Consensus 125 --~~~~~~~~~L~~L~l~~----------~--------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~ 182 (410)
..+......|.++.+++ | +...+|+.++++.+.....+.+. +.+|+.+....+.....
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~l 279 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVAL 279 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhh
Confidence 00001122333333333 2 11123444444444444443222 44444444433333333
Q ss_pred hhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccC----------------------C
Q 036454 183 QVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN----------------------P 240 (410)
Q Consensus 183 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~----------------------~ 240 (410)
+.+ +...++|+.|.+..|.+..+.+ ...++..|++|+++.-. + ..+.+ -
T Consensus 280 p~r-i~~~~~L~~l~~~~nel~yip~------~le~~~sL~tLdL~~N~-L-~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 280 PLR-ISRITSLVSLSAAYNELEYIPP------FLEGLKSLRTLDLQSNN-L-PSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred HHH-HhhhhhHHHHHhhhhhhhhCCC------cccccceeeeeeehhcc-c-cccchHHHhhhhHHHHHHhhhhcccccc
Confidence 322 2334445555555554544444 34457888888887621 1 00000 0
Q ss_pred CCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454 241 DSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND 320 (410)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 320 (410)
....-...+.|+.|++.+|. --+...+.+..+.+|+.|++++. ++..++. ....+++.||+|++++ +.++.++...
T Consensus 351 p~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~tv 426 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDTV 426 (1081)
T ss_pred ccccchhhHHHHHHHHhcCc-ccccchhhhccccceeeeeeccc-ccccCCH-HHHhchHHhHHHhccc-chhhhhhHHH
Confidence 00011234677788888874 33446677889999999999775 6888864 6778999999999999 6888999888
Q ss_pred CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc--cCCCCCCCCCcceeEecccchh
Q 036454 321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT--FSAGVLKTPRLQAVQNWELGED 393 (410)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~l~~~~~~~~ 393 (410)
.. ++.|++|...+ +++..++ +. ..+|.|+.+++ .|.+++. +|.... .|+||++++.+|...
T Consensus 427 a~------~~~L~tL~ahs-N~l~~fP-e~--~~l~qL~~lDl-S~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 AN------LGRLHTLRAHS-NQLLSFP-EL--AQLPQLKVLDL-SCNNLSEVTLPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred Hh------hhhhHHHhhcC-Cceeech-hh--hhcCcceEEec-ccchhhhhhhhhhCC-CcccceeeccCCccc
Confidence 88 99999997766 6788887 32 36999999999 5778875 444432 389999999966544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=1.1e-17 Score=149.83 Aligned_cols=344 Identities=18% Similarity=0.147 Sum_probs=175.9
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
+.++..+.+|.+.+. .+.++ |..|+.+.+++.++++.+ ++..+|... +.++.|+.++.+++. .++++...+
T Consensus 64 l~nL~~l~vl~~~~n-~l~~l----p~aig~l~~l~~l~vs~n-~ls~lp~~i--~s~~~l~~l~~s~n~-~~el~~~i~ 134 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDN-KLSQL----PAAIGELEALKSLNVSHN-KLSELPEQI--GSLISLVKLDCSSNE-LKELPDSIG 134 (565)
T ss_pred hhcccceeEEEeccc-hhhhC----CHHHHHHHHHHHhhcccc-hHhhccHHH--hhhhhhhhhhccccc-eeecCchHH
Confidence 556777777777776 33333 666777777777777766 445554432 566777777776665 555554211
Q ss_pred C--------C------CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------------------
Q 036454 95 R--------G------NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------------------ 142 (410)
Q Consensus 95 ~--------~------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------------------ 142 (410)
. + ...+.+..+.+|..+++.++ +++..+...+ ++..|++++..++
T Consensus 135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 0 0 00012233334444444444 3344433332 2444555544433
Q ss_pred -------------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 143 -------------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 143 -------------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
+....|++++++.|.+...+... ++++..||++.+.....|.+ ++-+.+|.+|+++++.+..+
T Consensus 212 yL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred HhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccC
Confidence 22234455555555544444333 55666666666666666644 35566666777776665555
Q ss_pred cccchhhccccccCcccEEEeCCcccc-----------------------cccc--cCCC-----------Ccccccccc
Q 036454 207 FSCEEVEEHAEGIAQIKSLKLKKLWLI-----------------------EEHL--WNPD-----------SKLDSFLQN 250 (410)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l-----------------------~~~~--~~~~-----------~~~~~~~~~ 250 (410)
.. ...++ .|+.|.+.|-+-- +..+ +.++ .......-+
T Consensus 291 p~------sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 291 PY------SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred Cc------ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 44 23344 5666665552100 0000 0000 000111223
Q ss_pred ceEEEEecccccccccccCcc---ccCccCEEEEccc----------------------CCcccccchhhhhcCCCccEE
Q 036454 251 LEFLEVKKCALSLISLVPSSA---SFRNLTVLKVCNC----------------------WQLISLVTPQTAKTLVQLREL 305 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~~~---~~~~L~~L~l~~c----------------------~~l~~~~~~~~~~~l~~L~~L 305 (410)
.+.|++++- .++.+|.... .-.-.+.++++.. .+..+++ ...+..+++|..|
T Consensus 364 tkiL~~s~~--qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv-~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 364 TKILDVSDK--QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV-PLELSQLQKLTFL 440 (565)
T ss_pred hhhhccccc--ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc-hHHHHhhhcceee
Confidence 333333332 2222221110 0000222222221 0111111 1345667777777
Q ss_pred EeccCcccchhccccCCCCccccccccceeecCcC----------------------cccceecCCCcccCCCCccEEEE
Q 036454 306 RVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS----------------------ESITSFCSGNYAFSFPSLEDLIV 363 (410)
Q Consensus 306 ~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c----------------------~~l~~~~~~~~~~~~~~L~~L~l 363 (410)
++++ .-+.++|...+. +-.|+.|+++.. .++..+... +..+|..|.+|++
T Consensus 441 ~L~N-N~Ln~LP~e~~~------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 441 DLSN-NLLNDLPEEMGS------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDL 512 (565)
T ss_pred eccc-chhhhcchhhhh------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH-Hhhhhhhcceecc
Confidence 7776 456667766666 666777777652 223333333 3457899999999
Q ss_pred ecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 364 ENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 364 ~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
.+ ..+.++|.++..+++|+++.+++|
T Consensus 513 ~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 513 QN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred CC-CchhhCChhhccccceeEEEecCC
Confidence 65 588899999999999999999943
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=138.41 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=41.5
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
.+-..|+++.+ .++.+|+ .+ .++|+.|++.++. ++.+|. ..++|++|+++++ .++.+|..
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l---~~~L~~L~L~~N~-Lt~LP~------------lp~~Lk~LdLs~N-~LtsLP~l- 260 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CL---PAHITTLVIPDNN-LTSLPA------------LPPELRTLEVSGN-QLTSLPVL- 260 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-ch---hcCCCEEEccCCc-CCCCCC------------CCCCCcEEEecCC-ccCcccCc-
Confidence 33556777776 5555544 22 2467777777764 666653 1367788888776 55555431
Q ss_pred ccCCCCCceEEEEccC
Q 036454 127 HILECPELRKLEVNHV 142 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~ 142 (410)
.++|+.|++.++
T Consensus 261 ----p~sL~~L~Ls~N 272 (788)
T PRK15387 261 ----PPGLLELSIFSN 272 (788)
T ss_pred ----ccccceeeccCC
Confidence 244555555444
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.7e-13 Score=136.56 Aligned_cols=248 Identities=21% Similarity=0.104 Sum_probs=138.9
Q ss_pred CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454 20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA 99 (410)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 99 (410)
.-..|+++++ +++.+ |..+ .++|+.|++.++ .++.+|. ..++|++|+++++. ++.+|.
T Consensus 202 ~~~~LdLs~~-~LtsL----P~~l--~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N~-LtsLP~-------- 259 (788)
T PRK15387 202 GNAVLNVGES-GLTTL----PDCL--PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV-------- 259 (788)
T ss_pred CCcEEEcCCC-CCCcC----Ccch--hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCCc-cCcccC--------
Confidence 3455666666 44443 5443 246777777776 5555532 24677777777764 666553
Q ss_pred cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------CccccccEEEeeccCcccccccccccccEEE
Q 036454 100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------DVFANLEELTLSKCIFTTWRQAQFHKLKILH 173 (410)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~ 173 (410)
..++|+.|+++++ .+..++. ...+|+.|++.++ ..+++|+.|++++|.+..++. ...+|+.|+
T Consensus 260 ----lp~sL~~L~Ls~N-~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~ 328 (788)
T PRK15387 260 ----LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-LPSELCKLW 328 (788)
T ss_pred ----cccccceeeccCC-chhhhhh-----chhhcCEEECcCCccccccccccccceeECCCCccccCCC-Ccccccccc
Confidence 1256777777766 3444433 1244555555555 122567777777776655433 244566666
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+..+.+..+|. -.++|+.|++++|.+..++. ..++|+.|++++. .+ ..+ ....++|+.
T Consensus 329 Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~---------lp~~L~~L~Ls~N-~L-~~L-------P~l~~~L~~ 386 (788)
T PRK15387 329 AYNNQLTSLPT----LPSGLQELSVSDNQLASLPT---------LPSELYKLWAYNN-RL-TSL-------PALPSGLKE 386 (788)
T ss_pred cccCccccccc----cccccceEecCCCccCCCCC---------CCcccceehhhcc-cc-ccC-------cccccccce
Confidence 65444444442 11467777777776665433 1246666666651 12 111 112346777
Q ss_pred EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454 254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK 333 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~ 333 (410)
|++++| .++.+|. .+++|+.|+++++ .+..++. .+.+|+.|++++ +.++.+|..+.. +++|+
T Consensus 387 LdLs~N--~Lt~LP~---l~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~------L~~L~ 448 (788)
T PRK15387 387 LIVSGN--RLTSLPV---LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR-NQLTRLPESLIH------LSSET 448 (788)
T ss_pred EEecCC--cccCCCC---cccCCCEEEccCC-cCCCCCc-----chhhhhhhhhcc-CcccccChHHhh------ccCCC
Confidence 777776 4555543 2356777777665 3555541 234566677765 345666666665 67777
Q ss_pred eeecCcC
Q 036454 334 WLFLESS 340 (410)
Q Consensus 334 ~L~l~~c 340 (410)
.|+++++
T Consensus 449 ~LdLs~N 455 (788)
T PRK15387 449 TVNLEGN 455 (788)
T ss_pred eEECCCC
Confidence 7777764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=2e-15 Score=135.51 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=102.2
Q ss_pred CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCc
Q 036454 40 PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDL 119 (410)
Q Consensus 40 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 119 (410)
|.+++++.++..+.+.++ .++.+++..+ ++..|+++|...+- ++.+|. .++.+.+|+.|++..+ ++
T Consensus 153 p~~~~~~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~-L~tlP~---------~lg~l~~L~~LyL~~N-ki 218 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNL-LETLPP---------ELGGLESLELLYLRRN-KI 218 (565)
T ss_pred chHHHHHHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhh-hhcCCh---------hhcchhhhHHHHhhhc-cc
Confidence 333444444444444444 3444444332 25555555554433 445554 6777888888888876 66
Q ss_pred cccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhh
Q 036454 120 TTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLL 187 (410)
Q Consensus 120 ~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l 187 (410)
..+|.. ..+..|+++++..+ ..++++..|++.+|.....+... +.+|.+||++++.++..|. .+
T Consensus 219 ~~lPef---~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~-sL 294 (565)
T KOG0472|consen 219 RFLPEF---PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY-SL 294 (565)
T ss_pred ccCCCC---CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc-cc
Confidence 666622 36788888888776 57789999999999999998887 8889999999999999885 46
Q ss_pred hhcccCceEEEeccccccc
Q 036454 188 QNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~ 206 (410)
+++ .|+.|.+.|+.++.+
T Consensus 295 gnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred ccc-eeeehhhcCCchHHH
Confidence 888 999999998865433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-14 Score=143.36 Aligned_cols=236 Identities=20% Similarity=0.248 Sum_probs=119.5
Q ss_pred CCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc--cccccEEEE
Q 036454 106 PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHF 174 (410)
Q Consensus 106 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l 174 (410)
.+|++++++.. .+..+| .. ...+.+|..+++.++ ....+|+.+.+..|....+++.. +..|+.|++
T Consensus 241 ~nl~~~dis~n-~l~~lp-~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLP-EW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchh-hhhcch-HH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 34555555554 444444 11 124555555555444 22345666666666666555543 666777777
Q ss_pred EeCCCccchhhhhhhccc-CceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 175 ISDGSDFFQVGLLQNIHN-LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 175 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
..+.+..+|..++.-... |+.|..+.+.+.....+ ....++.|+.|.+.+ +.+.+..+..+...++|+.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-----~e~~~~~Lq~Lylan-----N~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY-----EENNHAALQELYLAN-----NHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccc-----cchhhHHHHHHHHhc-----Ccccccchhhhccccceee
Confidence 555555555544444433 55555555444433321 112235555555555 4444444455555666666
Q ss_pred EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454 254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL 332 (410)
Q Consensus 254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L 332 (410)
|++++| .+.++|. ....++.|+.|+++|. .++.++ .....+++|++|...+ +.+..+| .+.+ ++.|
T Consensus 388 LhLsyN--rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahs-N~l~~fP-e~~~------l~qL 454 (1081)
T KOG0618|consen 388 LHLSYN--RLNSFPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHS-NQLLSFP-ELAQ------LPQL 454 (1081)
T ss_pred eeeccc--ccccCCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcC-Cceeech-hhhh------cCcc
Confidence 666666 4444442 2344555666666554 355554 3445555566555543 2344444 4444 5566
Q ss_pred ceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454 333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL 369 (410)
Q Consensus 333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 369 (410)
+.++++. ++++...... ....|.|++|++++..++
T Consensus 455 ~~lDlS~-N~L~~~~l~~-~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLSC-NNLSEVTLPE-ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEeccc-chhhhhhhhh-hCCCcccceeeccCCccc
Confidence 6666653 4455433321 122355666666655543
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=5.2e-15 Score=133.57 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=69.0
Q ss_pred cCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc--ccCccccCccCEEEEcccCCcccccchhhh
Q 036454 219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL--VPSSASFRNLTVLKVCNCWQLISLVTPQTA 296 (410)
Q Consensus 219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 296 (410)
+..|+.|..++|..+ .... -......+++|+.|.+.+|. .+++. .....+.+.|+.+++..|..+.+-...+..
T Consensus 293 c~~lq~l~~s~~t~~-~d~~--l~aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDI-TDEV--LWALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhHhhhhcccCCCCC-chHH--HHHHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 445555555555443 2110 01123445566666666665 44332 112234555666666555433333222333
Q ss_pred hcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454 297 KTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN 370 (410)
Q Consensus 297 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 370 (410)
..+|.|+.+.+++|..+++.-..... ........|..+++.+|+.+++.... ....|++|+.+++.+|..+.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~-~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLS-SSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhh-hccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence 55666666666666555443000000 00011455666666666666654433 22346666666666665554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=2.6e-11 Score=122.94 Aligned_cols=53 Identities=30% Similarity=0.255 Sum_probs=23.7
Q ss_pred ccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 249 QNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 249 ~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
++|+.|++++| .++.+|..+ +++|+.|++++| ++..++. ...++|++|++++|
T Consensus 325 ~sL~~L~Ls~N--~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~----~lp~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGEN--ALTSLPASL--PPELQVLDVSKN-QITVLPE----TLPPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCC--ccccCChhh--cCcccEEECCCC-CCCcCCh----hhcCCcCEEECCCC
Confidence 45555555555 344443321 245555555544 2443331 11245555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=5e-11 Score=120.91 Aligned_cols=240 Identities=16% Similarity=0.120 Sum_probs=148.3
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
.+..+|++.+. +++.+ |..+ .++|+.|+++++ .++.++.. ..++|++|+++++. ++.+|.
T Consensus 178 ~~~~~L~L~~~-~LtsL----P~~I--p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~------- 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI----PACI--PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQ-LTSIPA------- 237 (754)
T ss_pred cCceEEEeCCC-CcCcC----Cccc--ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCc-cccCCh-------
Confidence 45566666665 33333 3322 246777777766 55555332 23567777777664 655553
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--C-----ccccccEEEeeccCcccccccccccccE
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--D-----VFANLEELTLSKCIFTTWRQAQFHKLKI 171 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--~-----~l~~L~~L~i~~~~~~~~~~~~l~~L~~ 171 (410)
.+ .++|+.|+++++ .+..+|... ..+|+.|+++++ . ..++|+.|++++|.+..++....++|+.
T Consensus 238 --~l--~~~L~~L~Ls~N-~L~~LP~~l----~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~ 308 (754)
T PRK15370 238 --TL--PDTIQEMELSIN-RITELPERL----PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITH 308 (754)
T ss_pred --hh--hccccEEECcCC-ccCcCChhH----hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHH
Confidence 21 145677777766 444544322 135666666655 1 1246788888888776655433557888
Q ss_pred EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454 172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL 251 (410)
Q Consensus 172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L 251 (410)
|++..+....+|... .++|+.|.+++|.+..++. ...++|+.|+++++. + ..+ +. ...++|
T Consensus 309 L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~--------~l~~sL~~L~Ls~N~-L-~~L----P~--~lp~~L 369 (754)
T PRK15370 309 LNVQSNSLTALPETL---PPGLKTLEAGENALTSLPA--------SLPPELQVLDVSKNQ-I-TVL----PE--TLPPTI 369 (754)
T ss_pred HHhcCCccccCCccc---cccceeccccCCccccCCh--------hhcCcccEEECCCCC-C-CcC----Ch--hhcCCc
Confidence 888666666655322 3689999999988776543 123789999999852 3 222 11 224689
Q ss_pred eEEEEecccccccccccCccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCc
Q 036454 252 EFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECN 311 (410)
Q Consensus 252 ~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~ 311 (410)
++|++++| .+..+|+.+ ..+|+.|+++++ ++..++.. ......+.+..|++.+.+
T Consensus 370 ~~LdLs~N--~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 370 TTLDVSRN--ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CEEECCCC--cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 99999999 577777643 347899999776 57766531 233456888999998754
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.18 E-value=9.2e-13 Score=119.23 Aligned_cols=310 Identities=16% Similarity=0.184 Sum_probs=185.6
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
.-||.|.+.+|........+ .....+|++..|.+.+|.++++....++...+++|++|++..|.+++...-+.
T Consensus 138 g~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~----- 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY----- 210 (483)
T ss_pred cccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----
Confidence 35667777776543311111 11236677777777777766666666666677777777777666555432210
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-----cccccEEE
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-----FHKLKILH 173 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-----l~~L~~L~ 173 (410)
-...+++|++|+++-|+.++.-......-++..++.+...+| .-....... ...+.+++
T Consensus 211 --la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--------------~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 211 --LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--------------LELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred --HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc--------------ccccHHHHHHHhccChHhhccc
Confidence 233456666666666655544111111112233333333333 222111100 33445555
Q ss_pred E-EeCCCccchhhhh-hhcccCceEEEecccc-ccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454 174 F-ISDGSDFFQVGLL-QNIHNLEKLVLSTCEY-KKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN 250 (410)
Q Consensus 174 l-~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 250 (410)
+ .+..+++.....+ ..+.+||.|..++|.. .... -.......++|+.+-+++|..+ ... +.......++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~----l~aLg~~~~~L~~l~l~~c~~f-sd~--~ft~l~rn~~~ 347 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV----LWALGQHCHNLQVLELSGCQQF-SDR--GFTMLGRNCPH 347 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH----HHHHhcCCCceEEEeccccchh-hhh--hhhhhhcCChh
Confidence 5 4555555444444 4578899999888742 1110 0112345689999999999776 443 11233467889
Q ss_pred ceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccc---hhhhhcCCCccEEEeccCcccchhccccCCCCc
Q 036454 251 LEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVT---PQTAKTLVQLRELRVSECNRLEEIVANDGDADD 325 (410)
Q Consensus 251 L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 325 (410)
|+.+++..|. ...+ +..-..+++.|+.+.++.|..+++... .........|+.+.+++|+.+++.... +
T Consensus 348 Le~l~~e~~~-~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----~ 421 (483)
T KOG4341|consen 348 LERLDLEECG-LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----H 421 (483)
T ss_pred hhhhcccccc-eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-----H
Confidence 9999999986 4432 333346788999999998876665521 123356778999999999998765432 2
Q ss_pred cccccccceeecCcCcccceecCCCcccCCCCccEEEEe
Q 036454 326 EIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVE 364 (410)
Q Consensus 326 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 364 (410)
...+++|+++++.+|..++.-++.....++|+++.....
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 224899999999999999988887777888888877653
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=2.5e-11 Score=124.97 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=119.3
Q ss_pred ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccc
Q 036454 43 KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTF 122 (410)
Q Consensus 43 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 122 (410)
+.++|.|++|++++|..+..+|. +| +.+-+|++|+++++. ++.+|. .+..+.+|.+|++..+..+..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~-~I-~~Li~LryL~L~~t~-I~~LP~---------~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPS-SI-GELVHLRYLDLSDTG-ISHLPS---------GLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HhhCcceEEEECCCCCccCcCCh-HH-hhhhhhhcccccCCC-ccccch---------HHHHHHhhheeccccccccccc
Confidence 45677777777777766665533 33 577777777777765 777776 6777777777777766555444
Q ss_pred ccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-cccccccEEEEEeCCCccchhhhhhhcccCceE----E
Q 036454 123 YSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-AQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL----V 197 (410)
Q Consensus 123 ~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L----~ 197 (410)
+. .. ..+++|++|.+... . .... ...... ..+..|+.+.+..... .....+..++.|.++ .
T Consensus 635 ~~-i~-~~L~~Lr~L~l~~s----~---~~~~---~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 635 PG-IL-LELQSLRVLRLPRS----A---LSND---KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred cc-hh-hhcccccEEEeecc----c---cccc---hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 22 21 23566666665443 0 0000 000000 1144555555522221 111223344444433 3
Q ss_pred EeccccccccccchhhccccccCcccEEEeCCcccccccccC-CCCcccc-ccccceEEEEecccccccccccCccccCc
Q 036454 198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN-PDSKLDS-FLQNLEFLEVKKCALSLISLVPSSASFRN 275 (410)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~l~~l~~~~~~~~~ 275 (410)
+.++....... ....+.+|+.|.+.+|... +.... ....... .++++..+.+.+|. .+..+ .+....++
T Consensus 701 ~~~~~~~~~~~------~~~~l~~L~~L~i~~~~~~-e~~~~~~~~~~~~~~f~~l~~~~~~~~~-~~r~l-~~~~f~~~ 771 (889)
T KOG4658|consen 701 IEGCSKRTLIS------SLGSLGNLEELSILDCGIS-EIVIEWEESLIVLLCFPNLSKVSILNCH-MLRDL-TWLLFAPH 771 (889)
T ss_pred hcccccceeec------ccccccCcceEEEEcCCCc-hhhcccccccchhhhHHHHHHHHhhccc-ccccc-chhhccCc
Confidence 33333333333 4567899999999998775 22210 0011122 25677778888886 55443 44567899
Q ss_pred cCEEEEcccCCccccc
Q 036454 276 LTVLKVCNCWQLISLV 291 (410)
Q Consensus 276 L~~L~l~~c~~l~~~~ 291 (410)
|++|.+.+|..+..+.
T Consensus 772 L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 772 LTSLSLVSCRLLEDII 787 (889)
T ss_pred ccEEEEecccccccCC
Confidence 9999999998777765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=3.6e-11 Score=123.77 Aligned_cols=305 Identities=22% Similarity=0.262 Sum_probs=187.8
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcC-ccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQS-LKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG 96 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 96 (410)
....|++.+.+.. +..+ .+.+ ..++|++|-+..+.. +..+ +..++..+|.|+.||+++|..+.++|.
T Consensus 522 ~~~~rr~s~~~~~-~~~~-~~~~----~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~----- 589 (889)
T KOG4658|consen 522 WNSVRRMSLMNNK-IEHI-AGSS----ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPS----- 589 (889)
T ss_pred hhheeEEEEeccc-hhhc-cCCC----CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCCh-----
Confidence 4455666665542 2222 1112 556899999988753 4444 344457899999999999998999998
Q ss_pred CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454 97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH 173 (410)
Q Consensus 97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~ 173 (410)
.++.+-+||+|+++++ .++.+|.+. ..+..|.+|++..+ ......+.. +.+|++|.
T Consensus 590 ----~I~~Li~LryL~L~~t-~I~~LP~~l--~~Lk~L~~Lnl~~~--------------~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 590 ----SIGELVHLRYLDLSDT-GISHLPSGL--GNLKKLIYLNLEVT--------------GRLESIPGILLELQSLRVLR 648 (889)
T ss_pred ----HHhhhhhhhcccccCC-CccccchHH--HHHHhhheeccccc--------------cccccccchhhhcccccEEE
Confidence 8889999999999998 677777765 24455666655544 222222222 78899999
Q ss_pred E--EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCccc----EEEeCCcccccccccCCCCccccc
Q 036454 174 F--ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK----SLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 174 l--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+ +....+......+.++.+|+.+.+..... .+.. ...++..|. .+.+.+|..- .. ......
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e------~l~~~~~L~~~~~~l~~~~~~~~-~~-----~~~~~~ 715 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE------DLLGMTRLRSLLQSLSIEGCSKR-TL-----ISSLGS 715 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh-HhHh------hhhhhHHHHHHhHhhhhcccccc-ee-----eccccc
Confidence 9 33344455555566667777776655443 1111 123333343 3333222211 11 234678
Q ss_pred cccceEEEEecccccccccccC-----cc-ccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC
Q 036454 248 LQNLEFLEVKKCALSLISLVPS-----SA-SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG 321 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~-----~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 321 (410)
+.+|+.|.+.+|. ..+....+ .. .|+++..+.+..|....... +..-.|+|+.|++..|..+++++....
T Consensus 716 l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~k 791 (889)
T KOG4658|consen 716 LGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKLK 791 (889)
T ss_pred ccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCHHH
Confidence 8999999999996 43322111 11 26678888888887777664 446778999999999998887765544
Q ss_pred CCC----cccccccccee-ecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC
Q 036454 322 DAD----DEIVFSKLKWL-FLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA 374 (410)
Q Consensus 322 ~~~----~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 374 (410)
... ....|.++..+ .+.+.+.+..+.... ..++.|+.+.+..||++..+|.
T Consensus 792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcc
Confidence 310 01224445555 244444444433322 1256689999999999887764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=6.9e-11 Score=110.08 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=8.4
Q ss_pred ccCcccEEEeccC
Q 036454 45 IFRNLVVVRIFDC 57 (410)
Q Consensus 45 ~l~~L~~L~l~~~ 57 (410)
.+++|++|++++|
T Consensus 21 ~l~~L~~l~l~~~ 33 (319)
T cd00116 21 KLLCLQVLRLEGN 33 (319)
T ss_pred HHhhccEEeecCC
Confidence 4555667777666
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=6.1e-11 Score=110.43 Aligned_cols=15 Identities=27% Similarity=0.137 Sum_probs=10.3
Q ss_pred cccCCCccEEeeccC
Q 036454 102 KFIFPSLTFLRLRDL 116 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~ 116 (410)
+..+.+|+.++++++
T Consensus 19 ~~~l~~L~~l~l~~~ 33 (319)
T cd00116 19 LPKLLCLQVLRLEGN 33 (319)
T ss_pred HHHHhhccEEeecCC
Confidence 344566888888877
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-10 Score=104.50 Aligned_cols=199 Identities=17% Similarity=0.200 Sum_probs=122.0
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc--CcceEeccCCCCCCCcccccCCCccEEeeccCCCcccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG--SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTF 122 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 122 (410)
.+++|+.+.+++| .+...+.......||+++.||++++- ++..+.. .+.+||+|+.|+++.+ .+..+
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~---------i~eqLp~Le~LNls~N-rl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK---------IAEQLPSLENLNLSSN-RLSNF 187 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHH---------HHHhcccchhcccccc-cccCC
Confidence 6777888888777 44433321334677888888887642 1222222 4456788888888776 44444
Q ss_pred ccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccch-hhhh
Q 036454 123 YSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQ-VGLL 187 (410)
Q Consensus 123 ~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~-~~~l 187 (410)
........+++|+.|.++.| ..+|+|+.|.+++|......... +..|+.|+|.++...+++ ....
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc
Confidence 44333446778888888888 56788999988888532222211 788899999444433333 3456
Q ss_pred hhcccCceEEEeccccccccccchhh-ccccccCcccEEEeCCcccccccc--cCCCCccccccccceEEEEeccc
Q 036454 188 QNIHNLEKLVLSTCEYKKIFSCEEVE-EHAEGIAQIKSLKLKKLWLIEEHL--WNPDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 260 (410)
..+|.|+.|+++.|.+..+-.+++.. .....+++|++|++.. +.+ |.. ...+..+++|+.|.+..++
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-----N~I~~w~s-l~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-----NNIRDWRS-LNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-----Cccccccc-cchhhccchhhhhhccccc
Confidence 78899999999988776653321111 1124568888888887 333 221 2234556677777766664
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.88 E-value=1e-10 Score=105.48 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=132.5
Q ss_pred cCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
+....++++.. +++.+ |++ ++.+++||+|+|+++ +++.+.|..+ .++++|.+|-+-+.+++++++.+.|
T Consensus 67 ~~tveirLdqN-~I~~i----P~~aF~~l~~LRrLdLS~N-~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F--- 136 (498)
T KOG4237|consen 67 PETVEIRLDQN-QISSI----PPGAFKTLHRLRRLDLSKN-NISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAF--- 136 (498)
T ss_pred CcceEEEeccC-CcccC----Chhhccchhhhceeccccc-chhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHh---
Confidence 44556666665 45544 433 678888888888888 6777777765 4777777776666555888876433
Q ss_pred CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcc--------
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFT-------- 159 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~-------- 159 (410)
.++.+|+.|.+..+ ++..+....+. .++++..|.+++. ..+..++.+++..|++.
T Consensus 137 -----~gL~slqrLllNan-~i~Cir~~al~-dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 137 -----GGLSSLQRLLLNAN-HINCIRQDALR-DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred -----hhHHHHHHHhcChh-hhcchhHHHHH-HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 33444444443332 11111111111 2333333333333 11122333333322210
Q ss_pred ----------------------------cccccc-cccccEE--EE--EeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 160 ----------------------------TWRQAQ-FHKLKIL--HF--ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 160 ----------------------------~~~~~~-l~~L~~L--~l--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
.....+ ...++.+ .+ .+......|...+..+++|+.|++++++++.+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 000011 2223333 11 33345566666788889999999998888777
Q ss_pred cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEccc
Q 036454 207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNC 284 (410)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c 284 (410)
-. ..+.++..++.|.+.+ +.+..-....+..+..|+.|++.+| .++.+.+ .+.....|.+|++.+.
T Consensus 290 ~~-----~aFe~~a~l~eL~L~~-----N~l~~v~~~~f~~ls~L~tL~L~~N--~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 290 ED-----GAFEGAAELQELYLTR-----NKLEFVSSGMFQGLSGLKTLSLYDN--QITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hh-----hhhcchhhhhhhhcCc-----chHHHHHHHhhhccccceeeeecCC--eeEEEecccccccceeeeeehccC
Confidence 33 3577788888888876 3332112345777888888888888 5655433 3445566777777653
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=1.7e-10 Score=92.52 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=107.4
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
+-+++++.+|.+++. +++.+ |..|..+.+|+.|++.++ .++++|. ++ ..++.|+.|++.-+. +..+|.
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~v----ppnia~l~nlevln~~nn-qie~lp~-~i-ssl~klr~lnvgmnr-l~~lpr--- 96 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVV----PPNIAELKNLEVLNLSNN-QIEELPT-SI-SSLPKLRILNVGMNR-LNILPR--- 96 (264)
T ss_pred ccchhhhhhhhcccC-ceeec----CCcHHHhhhhhhhhcccc-hhhhcCh-hh-hhchhhhheecchhh-hhcCcc---
Confidence 445667777777776 44444 777888888888888877 5666643 44 578888888886443 767776
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--cccccEE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--FHKLKIL 172 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L 172 (410)
.++.||.|+.||++++.--....++ ++- .+++|+-|.+++|.+...++.. +.+|+.|
T Consensus 97 ------gfgs~p~levldltynnl~e~~lpg----nff-----------~m~tlralyl~dndfe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 97 ------GFGSFPALEVLDLTYNNLNENSLPG----NFF-----------YMTTLRALYLGDNDFEILPPDVGKLTNLQIL 155 (264)
T ss_pred ------ccCCCchhhhhhccccccccccCCc----chh-----------HHHHHHHHHhcCCCcccCChhhhhhcceeEE
Confidence 7778888888888776321111111 111 1267777788888887777655 7777777
Q ss_pred EEEeCCCccchhhhhhhcccCceEEEeccccccccc
Q 036454 173 HFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFS 208 (410)
Q Consensus 173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 208 (410)
.++.+..-..|. .++.++.|+.|++.++++..+++
T Consensus 156 ~lrdndll~lpk-eig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 156 SLRDNDLLSLPK-EIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred eeccCchhhCcH-HHHHHHHHHHHhcccceeeecCh
Confidence 776666666663 35777888888888877665544
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.4e-10 Score=99.48 Aligned_cols=187 Identities=19% Similarity=0.083 Sum_probs=127.1
Q ss_pred ccccEEEEEeCCCccch-hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454 167 HKLKILHFISDGSDFFQ-VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD 245 (410)
Q Consensus 167 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 245 (410)
+.|+.||++...++... -..++++.+|+.|.+.+.+++.-+.. ....-.+|+.|+|+.|+-+ +.. +..-.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-----~iAkN~~L~~lnlsm~sG~-t~n--~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-----TIAKNSNLVRLNLSMCSGF-TEN--ALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-----HHhccccceeecccccccc-chh--HHHHHH
Confidence 45888888655554333 34568899999999999876543321 2344588999999999776 443 122357
Q ss_pred cccccceEEEEecccccccccccCc--cccCccCEEEEcccC-CcccccchhhhhcCCCccEEEeccCcccchhc-cccC
Q 036454 246 SFLQNLEFLEVKKCALSLISLVPSS--ASFRNLTVLKVCNCW-QLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDG 321 (410)
Q Consensus 246 ~~~~~L~~L~l~~~~~~l~~l~~~~--~~~~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~ 321 (410)
..|+.|++|++++|. ..+.....+ .--++|+.|+++||. ++..-........+|+|-+|+++.|..++.-. ..+.
T Consensus 257 ~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 889999999999997 544433221 224679999999983 33333333455789999999999987775532 2233
Q ss_pred CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454 322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL 369 (410)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 369 (410)
+ |+-|++|.++-|..+..-..- .+...|+|.+|++.+|-.-
T Consensus 336 k------f~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 K------FNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred h------cchheeeehhhhcCCChHHee-eeccCcceEEEEeccccCc
Confidence 3 899999999999865432111 2345899999999988443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.2e-09 Score=97.19 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=98.7
Q ss_pred cccccEEEEEeCCCccc--hhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454 166 FHKLKILHFISDGSDFF--QVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK 243 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 243 (410)
+++++.|+++.+....+ -..+..++|+|+.|+++.+.+..-... ..-..++.|+.|.+++|.--...+ -.
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~~~~l~~lK~L~l~~CGls~k~V----~~ 216 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NTTLLLSHLKQLVLNSCGLSWKDV----QW 216 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cchhhhhhhheEEeccCCCCHHHH----HH
Confidence 55555555533332221 123446778888888877764433220 001235777888887774220111 12
Q ss_pred cccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC-C
Q 036454 244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG-D 322 (410)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~ 322 (410)
....+|+|+.|++..|. .+..-...-.-+..|+.|++++.+ +.+++.....+.+|.|+.|+++.| +++++..... .
T Consensus 217 ~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s 293 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVES 293 (505)
T ss_pred HHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc-CcchhcCCCccc
Confidence 35567788888777774 332222223445667777876654 444544345577777777777764 4443322111 1
Q ss_pred CCccccccccceeecCcCcccceecCCCcccCCCCccEEEE
Q 036454 323 ADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIV 363 (410)
Q Consensus 323 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l 363 (410)
.++.+.|++|+.|.+... ++.++..-.....+++|+.+.+
T Consensus 294 ~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 235566788888877763 3433332222234556666654
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1e-09 Score=95.58 Aligned_cols=215 Identities=18% Similarity=0.144 Sum_probs=126.2
Q ss_pred CcccccccCccccccccccCCcE--EEecCccccccccccCCc---ccc-ccCcccEEEeccCcCccccCchhHHhhhhc
Q 036454 1 EIFDLQEVNSEETHSGAATQLRE--LHVFHLPKLTKLWNKDPQ---GKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLR 74 (410)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~L~~--L~l~~~~~l~~~~~~~~~---~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 74 (410)
+++|+++-++.+..++.+.+=.+ +++... ....|. .+. +=..|++++++.. .++.-....+...|.+
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~------~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLSRGVIVFRLARS------FMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred eeeccCCCccChhHHHHHHhCCeEEEEcchh------hhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 35677777777777777754444 444322 111121 111 2245889999876 5554445566688999
Q ss_pred cceEeeccccCcce-EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------
Q 036454 75 LETLSIKDCGSVEE-IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------- 142 (410)
Q Consensus 75 L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------- 142 (410)
|+.|.+.|.. +.+ +.. .+..-..|+.++++.|..+++.....+-..+..|.+|+++.|
T Consensus 212 Lk~lSlEg~~-LdD~I~~---------~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 212 LKNLSLEGLR-LDDPIVN---------TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred hhhccccccc-cCcHHHH---------HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 9999998876 432 222 445557899999999988877654443346778888888888
Q ss_pred -CccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhh-hhcccCceEEEeccc-cccccccchhhcccccc
Q 036454 143 -DVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLL-QNIHNLEKLVLSTCE-YKKIFSCEEVEEHAEGI 219 (410)
Q Consensus 143 -~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l 219 (410)
..-++|..|+++|+.-.-. ......+ ..+|+|..|++++|- ++. . ....+..+
T Consensus 282 ~hise~l~~LNlsG~rrnl~-------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~--~---~~~~~~kf 337 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQ-------------------KSHLSTLVRRCPNLVHLDLSDSVMLKN--D---CFQEFFKF 337 (419)
T ss_pred hhhchhhhhhhhhhhHhhhh-------------------hhHHHHHHHhCCceeeeccccccccCc--h---HHHHHHhc
Confidence 2224556666665443211 1111222 456777777777663 211 0 11124456
Q ss_pred CcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454 220 AQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 260 (410)
+.|++|.++.|..+. .- -.-.+...|.|.+|++.+|-
T Consensus 338 ~~L~~lSlsRCY~i~-p~---~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDII-PE---TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCCC-hH---HeeeeccCcceEEEEecccc
Confidence 777777777776551 10 01235567788888888773
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=1e-09 Score=99.06 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=42.8
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
+.-..|+|..+ .++.+|+..+ +.+++|++||++.+. +..|.++ .+.++++|-.|.+.+..++++++.+.
T Consensus 67 ~~tveirLdqN-~I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~--------AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 67 PETVEIRLDQN-QISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPD--------AFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcceEEEeccC-CcccCChhhc-cchhhhceecccccc-hhhcChH--------hhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 34556666666 5666655544 577777777777665 6655541 44556666666666655666666654
Q ss_pred c
Q 036454 127 H 127 (410)
Q Consensus 127 ~ 127 (410)
+
T Consensus 136 F 136 (498)
T KOG4237|consen 136 F 136 (498)
T ss_pred h
Confidence 4
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.67 E-value=7.2e-10 Score=88.94 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=90.7
Q ss_pred ccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcc
Q 036454 41 QGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT 120 (410)
Q Consensus 41 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 120 (410)
.++..+.++.+|.++++ .+...+|. | ..+.+|+.|++.++. ++++|. .+..+++|+.|+++-+ .+.
T Consensus 27 ~gLf~~s~ITrLtLSHN-Kl~~vppn-i-a~l~nlevln~~nnq-ie~lp~---------~issl~klr~lnvgmn-rl~ 92 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHN-KLTVVPPN-I-AELKNLEVLNLSNNQ-IEELPT---------SISSLPKLRILNVGMN-RLN 92 (264)
T ss_pred ccccchhhhhhhhcccC-ceeecCCc-H-HHhhhhhhhhcccch-hhhcCh---------hhhhchhhhheecchh-hhh
Confidence 34457788899999988 66666554 4 489999999999876 999998 8889999999998754 666
Q ss_pred ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEec
Q 036454 121 TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLST 200 (410)
Q Consensus 121 ~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 200 (410)
..|.+. +.+|.|+.|++++. +|.+=.+.+|.+. +..|+.|++..+....+|. .++++++||.|.+.+
T Consensus 93 ~lprgf--gs~p~levldltyn----nl~e~~lpgnff~------m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 93 ILPRGF--GSFPALEVLDLTYN----NLNENSLPGNFFY------MTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRD 159 (264)
T ss_pred cCcccc--CCCchhhhhhcccc----ccccccCCcchhH------HHHHHHHHhcCCCcccCCh-hhhhhcceeEEeecc
Confidence 666665 34444444444332 2222222221111 5566666765555555553 346667777776666
Q ss_pred cccccccc
Q 036454 201 CEYKKIFS 208 (410)
Q Consensus 201 ~~~~~~~~ 208 (410)
+.+..++.
T Consensus 160 ndll~lpk 167 (264)
T KOG0617|consen 160 NDLLSLPK 167 (264)
T ss_pred CchhhCcH
Confidence 55444433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=3.3e-08 Score=86.48 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=68.6
Q ss_pred ccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454 167 HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS 246 (410)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 246 (410)
..|++++++.+.+..+. +.+.-.|.++.|+++.+++..+.. ...+++|+.|++++ +.+.. ...+-.
T Consensus 284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~-----N~Ls~-~~Gwh~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSG-----NLLAE-CVGWHL 349 (490)
T ss_pred hhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh-------hhhcccceEeeccc-----chhHh-hhhhHh
Confidence 34445555444433333 223344666666666666555533 44556666666665 22210 012334
Q ss_pred ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454 247 FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
.+-|.++|.+.+| .+.++. .++.+.+|.+|++++. +++.+..-..++.+|+|+.+.+.+++
T Consensus 350 KLGNIKtL~La~N--~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN--KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh--hHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 4556666777666 444442 2455666777777654 45555444456777777777777643
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=1.5e-07 Score=78.27 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=41.8
Q ss_pred cccccCCcEEEecCccccccccccCCcccc-ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
..+...+++|++.++ .++.+ +.++ .+.+|+.|++++| .++.+... ..+++|++|+++++. ++.+..
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~l---~~L~~L~~L~L~~N~-I~~i~~-- 81 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTI-----ENLGATLDKLEVLDLSNN-QITKLEGL---PGLPRLKTLDLSNNR-ISSISE-- 81 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CH--
T ss_pred ccccccccccccccc-ccccc-----cchhhhhcCCCEEECCCC-CCccccCc---cChhhhhhcccCCCC-CCcccc--
Confidence 344456788888876 33332 2333 4678888888887 55555443 567888888888775 666543
Q ss_pred CCCCCCccc-ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEE
Q 036454 94 GRGNDAATK-FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKIL 172 (410)
Q Consensus 94 ~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L 172 (410)
.+ ..+++|+.|.++++ .+.++... ..| ..+++|+.|++.+|+.....
T Consensus 82 -------~l~~~lp~L~~L~L~~N-~I~~l~~l------~~L--------~~l~~L~~L~L~~NPv~~~~---------- 129 (175)
T PF14580_consen 82 -------GLDKNLPNLQELYLSNN-KISDLNEL------EPL--------SSLPKLRVLSLEGNPVCEKK---------- 129 (175)
T ss_dssp -------HHHHH-TT--EEE-TTS----SCCCC------GGG--------GG-TT--EEE-TT-GGGGST----------
T ss_pred -------chHHhCCcCCEEECcCC-cCCChHHh------HHH--------HcCCCcceeeccCCcccchh----------
Confidence 23 35778888888776 44433211 111 12256666666666654221
Q ss_pred EEEeCCCccchhhhhhhcccCceEEEe
Q 036454 173 HFISDGSDFFQVGLLQNIHNLEKLVLS 199 (410)
Q Consensus 173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~ 199 (410)
.+....+..+|+|+.|+-.
T Consensus 130 --------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 130 --------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --------THHHHHHHH-TT-SEETTE
T ss_pred --------hHHHHHHHHcChhheeCCE
Confidence 2223445677777777654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=3.3e-07 Score=76.24 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=16.8
Q ss_pred ccccccceEEEEecccccccccccCc-cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 245 DSFLQNLEFLEVKKCALSLISLVPSS-ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
++.++.|++|++++| .++++.+.+ ..+++|++|.+++. ++.++........+|+|+.|++.++
T Consensus 60 l~~L~~L~~L~L~~N--~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNN--RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp ----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred ccChhhhhhcccCCC--CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC
Confidence 444555555555555 344332222 23455555555433 2333332223344555555555543
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=4.8e-06 Score=77.95 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=88.7
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++++.|++++|.+..++. -.++|++|.+++|.++ ..+. . ...++|++|.+++|. .+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nL-tsLP----~--~LP~nLe~L~Ls~Cs-~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNL-TTLP----G--SIPEGLEKLTVCHCP-EISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCc-ccCC----c--hhhhhhhheEccCcc-ccccc
Confidence 4557899999999997766643 2357999999999888 5552 1 124689999999997 66555
Q ss_pred ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454 267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF 346 (410)
Q Consensus 267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 346 (410)
| ++|+.|++. +.....+. .-.++|++|.+.++......... ....++|+.|.+.+|..+. +
T Consensus 111 P------~sLe~L~L~-~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp------~~LPsSLk~L~Is~c~~i~-L 171 (426)
T PRK15386 111 P------ESVRSLEIK-GSATDSIK-----NVPNGLTSLSINSYNPENQARID------NLISPSLKTLSLTGCSNII-L 171 (426)
T ss_pred c------cccceEEeC-CCCCcccc-----cCcchHhheeccccccccccccc------cccCCcccEEEecCCCccc-C
Confidence 4 457788875 33333222 23357888888543221111000 0124789999999988553 2
Q ss_pred cCCCcccCCCCccEEEEecC
Q 036454 347 CSGNYAFSFPSLEDLIVENC 366 (410)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~c 366 (410)
+... -++|+.|.+..+
T Consensus 172 P~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 172 PEKL----PESLQSITLHIE 187 (426)
T ss_pred cccc----cccCcEEEeccc
Confidence 2221 258999998765
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=2.8e-07 Score=80.79 Aligned_cols=128 Identities=21% Similarity=0.234 Sum_probs=88.7
Q ss_pred hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454 188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV 267 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~ 267 (410)
...+.|+.++++++.+..+.. +..-.|.++.|+++. +.+.. ...+..+++|+.|++++| .++.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~-----N~i~~--v~nLa~L~~L~~LDLS~N--~Ls~~~ 345 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQ-----NRIRT--VQNLAELPQLQLLDLSGN--LLAECV 345 (490)
T ss_pred chHhhhhhccccccchhhhhh------hhhhccceeEEeccc-----cceee--ehhhhhcccceEeecccc--hhHhhh
Confidence 445789999999988777655 344468899999988 44421 123677889999999998 576666
Q ss_pred cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccch--hccccCCCCccccccccceeecCcCc
Q 036454 268 PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEE--IVANDGDADDEIVFSKLKWLFLESSE 341 (410)
Q Consensus 268 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~c~ 341 (410)
.|-..+.++++|.+++. .+.++ ++.+.+-+|..|+++++ .++. -...+|. +|.|+.+.+.+.|
T Consensus 346 Gwh~KLGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~------LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGN------LPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhcCEeeeehhhh-hHhhh---hhhHhhhhheecccccc-chhhHHHhccccc------ccHHHHHhhcCCC
Confidence 66677888888888765 35555 46677888888888873 3332 2344455 7777777777644
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=3.3e-06 Score=79.02 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=92.1
Q ss_pred ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454 218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK 297 (410)
Q Consensus 218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 297 (410)
.+.++++|++++| .+ ..+ ....++|++|.+++|. .++.+|..+ +++|++|.+++|.++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L-~sL-------P~LP~sLtsL~Lsnc~-nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------ 111 (426)
T PRK15386 50 EARASGRLYIKDC-DI-ESL-------PVLPNELTEITIENCN-NLTTLPGSI--PEGLEKLTVCHCPEISGLP------ 111 (426)
T ss_pred HhcCCCEEEeCCC-CC-ccc-------CCCCCCCcEEEccCCC-CcccCCchh--hhhhhheEccCcccccccc------
Confidence 4588999999998 55 444 1344579999999998 887776533 4689999999997776554
Q ss_pred cCCCccEEEecc--CcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCC
Q 036454 298 TLVQLRELRVSE--CNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSA 374 (410)
Q Consensus 298 ~l~~L~~L~l~~--c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~ 374 (410)
++|+.|++.+ |..+..+ .++|+.|.+.+.......... ..+ ++|++|.+.+|..+. +|.
T Consensus 112 --~sLe~L~L~~n~~~~L~~L------------PssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~ 173 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNV------------PNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPE 173 (426)
T ss_pred --cccceEEeCCCCCcccccC------------cchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccc
Confidence 3688888864 2223333 567888888653322111111 124 589999999998664 666
Q ss_pred CCCCCCCcceeEecc
Q 036454 375 GVLKTPRLQAVQNWE 389 (410)
Q Consensus 375 ~~~~~~~L~~l~~~~ 389 (410)
++ +.+|+.|.+..
T Consensus 174 ~L--P~SLk~L~ls~ 186 (426)
T PRK15386 174 KL--PESLQSITLHI 186 (426)
T ss_pred cc--cccCcEEEecc
Confidence 54 68999999863
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.7e-06 Score=75.92 Aligned_cols=190 Identities=18% Similarity=0.201 Sum_probs=110.4
Q ss_pred cccccEEEEEeCCCccch--hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccc-cCCCC
Q 036454 166 FHKLKILHFISDGSDFFQ--VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHL-WNPDS 242 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~ 242 (410)
...++.+++.++.++++. ..++.++|.|+.|+++.+.+...+.. ......+|++|.+.+ +.+ |....
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNg-----T~L~w~~~~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNG-----TGLSWTQST 139 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcC-----CCCChhhhh
Confidence 555666666444444433 23567899999999998876655441 113457899999987 443 22233
Q ss_pred ccccccccceEEEEecccccccccc---cCc-cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh-c
Q 036454 243 KLDSFLQNLEFLEVKKCALSLISLV---PSS-ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI-V 317 (410)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~l~~l~---~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~ 317 (410)
.....+|.+++|+++.|. +..+- ... ..-+.+++|+...|.-..-.........+|++..+.+..|+-.+.- .
T Consensus 140 s~l~~lP~vtelHmS~N~--~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS--LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhhcchhhhhhhhccch--hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc
Confidence 446677888888888873 21110 000 1234567777777742111111112356788888888777543222 1
Q ss_pred cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC
Q 036454 318 ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA 374 (410)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 374 (410)
..... +|.+.-|.+.. .++.++..-.....||.|..|.+.+.|-...+..
T Consensus 218 k~se~------~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 218 KGSEP------FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred ccCCC------CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 22223 67777777766 4555544322334588888888888877665543
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.13 E-value=2.8e-07 Score=90.84 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=19.3
Q ss_pred cceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454 332 LKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN 370 (410)
Q Consensus 332 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 370 (410)
++.|.+..|...+..........+..++.+.+.+|+.+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 566666666555544332211114455555666655544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=1.4e-05 Score=54.39 Aligned_cols=59 Identities=27% Similarity=0.368 Sum_probs=32.0
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL 116 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 116 (410)
|+|++|++++| .++.+++..+ .++++|++|+++++. ++.++. ..+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~-l~~i~~--------~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNN-LTSIPP--------DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSS-ESEEET--------TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCc-cCccCH--------HHHcCCCCCCEEeCcCC
Confidence 35566666665 5555544332 456666666666554 555553 13445566666666554
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=3.4e-06 Score=75.57 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=9.3
Q ss_pred hhhhccceEeecccc
Q 036454 70 RSLLRLETLSIKDCG 84 (410)
Q Consensus 70 ~~l~~L~~L~l~~~~ 84 (410)
..+..+++++++|+.
T Consensus 27 ~~~~s~~~l~lsgnt 41 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNT 41 (382)
T ss_pred cccCceEEEeccCCc
Confidence 345567777777654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.89 E-value=3.2e-05 Score=52.55 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=47.2
Q ss_pred hccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC
Q 036454 73 LRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV 142 (410)
Q Consensus 73 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 142 (410)
|+|++|+++++. +..++. ..+..+++|+.|+++++ .++.++...+. .+++|++|+++++
T Consensus 1 p~L~~L~l~~n~-l~~i~~--------~~f~~l~~L~~L~l~~N-~l~~i~~~~f~-~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPP--------DSFSNLPNLETLDLSNN-NLTSIPPDAFS-NLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECT--------TTTTTGTTESEEEETSS-SESEEETTTTT-TSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCH--------HHHcCCCCCCEeEccCC-ccCccCHHHHc-CCCCCCEEeCcCC
Confidence 689999999985 988886 25677899999999977 77888777665 6777777777665
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=1.1e-05 Score=70.96 Aligned_cols=87 Identities=18% Similarity=0.103 Sum_probs=47.2
Q ss_pred cCcccEEEeccCcCccc-cCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 46 FRNLVVVRIFDCQSLKN-IFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 46 l~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
...+..+.+.+| .+.. -....+...+.+++++|+.++. +.++..-+ ..+.++|.|+.|+++.++-...+
T Consensus 44 ~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~------~ile~lP~l~~LNls~N~L~s~I-- 113 (418)
T KOG2982|consen 44 LRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIG------AILEQLPALTTLNLSCNSLSSDI-- 113 (418)
T ss_pred ccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHH------HHHhcCccceEeeccCCcCCCcc--
Confidence 334445666666 3322 2233455777888888887764 33322111 15567788888888877432222
Q ss_pred CcccCCCCCceEEEEccC
Q 036454 125 GMHILECPELRKLEVNHV 142 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~ 142 (410)
+..+....+|+.|.+.+.
T Consensus 114 ~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 114 KSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred ccCcccccceEEEEEcCC
Confidence 111124456666666554
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.78 E-value=2.5e-05 Score=74.99 Aligned_cols=171 Identities=21% Similarity=0.247 Sum_probs=87.9
Q ss_pred hhhccceEeeccccCcceEeccCCCCCCCcccccCC-CccEEeeccCCCccccccCcccCCCCCceEEEEccCCcccccc
Q 036454 71 SLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP-SLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLE 149 (410)
Q Consensus 71 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~ 149 (410)
.++.++.|++.+.. +.+++. ....+. +|+.|+++++ .+..++... ..+ +.|+
T Consensus 114 ~~~~l~~L~l~~n~-i~~i~~---------~~~~~~~nL~~L~l~~N-~i~~l~~~~--~~l--------------~~L~ 166 (394)
T COG4886 114 ELTNLTSLDLDNNN-ITDIPP---------LIGLLKSNLKELDLSDN-KIESLPSPL--RNL--------------PNLK 166 (394)
T ss_pred cccceeEEecCCcc-cccCcc---------ccccchhhccccccccc-chhhhhhhh--hcc--------------cccc
Confidence 44556666666554 555554 334442 6666666665 343332111 122 3444
Q ss_pred EEEeeccCccccccc--ccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEe
Q 036454 150 ELTLSKCIFTTWRQA--QFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKL 227 (410)
Q Consensus 150 ~L~i~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 227 (410)
.|++++|.....+.. ..++|+.|++++..+..++... ....+|++|.++++....... ....+.++..+.+
T Consensus 167 ~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~------~~~~~~~l~~l~l 239 (394)
T COG4886 167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLS------SLSNLKNLSGLEL 239 (394)
T ss_pred ccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceecch------hhhhccccccccc
Confidence 444444444444333 2445555555444444544321 233457777777764323222 2344555555554
Q ss_pred CCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454 228 KKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 228 ~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c 284 (410)
...... .+ ......+++++.|++++| .+++++. .+...+++.|++++.
T Consensus 240 ~~n~~~--~~----~~~~~~l~~l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 240 SNNKLE--DL----PESIGNLSNLETLDLSNN--QISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred CCceee--ec----cchhccccccceeccccc--ccccccc-ccccCccCEEeccCc
Confidence 431111 10 234566677888888887 5666655 667777888887665
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=1.6e-06 Score=77.62 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=43.0
Q ss_pred cccccccCCcEEEecCccccccccccCCcc-------ccccCcccEEEeccCcCccc--c-CchhHHhhhhccceEeecc
Q 036454 13 THSGAATQLRELHVFHLPKLTKLWNKDPQG-------KLIFRNLVVVRIFDCQSLKN--I-FPTSIARSLLRLETLSIKD 82 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~~~l~~L~~L~l~~~~~l~~--~-~~~~~~~~l~~L~~L~l~~ 82 (410)
..+.+-++|++.++++.-.-+ .-...|+. +...|+|++|+|+++ .+.. . +...+..++..|++|++.+
T Consensus 52 ~~L~~~~~L~~v~~sd~ftGR-~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDMFTGR-LKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HHHhhcccceeeehHhhhcCC-cHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhc
Confidence 346667789999988852111 11111222 246789999999988 3321 1 1113336788899999998
Q ss_pred cc
Q 036454 83 CG 84 (410)
Q Consensus 83 ~~ 84 (410)
|.
T Consensus 130 ~G 131 (382)
T KOG1909|consen 130 CG 131 (382)
T ss_pred CC
Confidence 86
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.69 E-value=5.3e-05 Score=72.75 Aligned_cols=174 Identities=26% Similarity=0.258 Sum_probs=96.9
Q ss_pred cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccc-ccc-cccccEEEEEeCCC
Q 036454 102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWR-QAQ-FHKLKILHFISDGS 179 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~-~~~-l~~L~~L~l~~~~~ 179 (410)
+..++.++.|++.+. .+.+++..... .. ++|+.|+++++.+...+ +.. +++|+.|++....+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~--~~-------------~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGL--LK-------------SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred hhcccceeEEecCCc-ccccCcccccc--ch-------------hhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 344456777777665 44444332211 10 14555566666555552 222 77777777766666
Q ss_pred ccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc
Q 036454 180 DFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC 259 (410)
Q Consensus 180 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (410)
.+++.. ....++|+.|.++++.+..+.. .......|+++.+++-... ........++++..|.+.++
T Consensus 176 ~~l~~~-~~~~~~L~~L~ls~N~i~~l~~------~~~~~~~L~~l~~~~N~~~------~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 176 SDLPKL-LSNLSNLNNLDLSGNKISDLPP------EIELLSALEELDLSNNSII------ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred hhhhhh-hhhhhhhhheeccCCccccCch------hhhhhhhhhhhhhcCCcce------ecchhhhhcccccccccCCc
Confidence 665532 1256777777777777666654 1123445777777662111 11233455666666666665
Q ss_pred cccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 260 ALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 260 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
.+..++...+.++++++|+++++ .+.+++. ...+.+++.|++++.
T Consensus 243 --~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 243 --KLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred --eeeeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCc
Confidence 34443445566677777777554 3555532 466677777777764
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.1e-05 Score=79.74 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc-cccccEEE
Q 036454 106 PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ-FHKLKILH 173 (410)
Q Consensus 106 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~ 173 (410)
.+|++|+++|...+..-+.......+|+|++|.+++- ..+|+|..|||+++++....... +++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 3566666666544433333333335677777766653 56777888888877776553332 77777777
Q ss_pred EEeCCCcc-chhhhhhhcccCceEEEecccccccccc-chhhccccccCcccEEEeCC
Q 036454 174 FISDGSDF-FQVGLLQNIHNLEKLVLSTCEYKKIFSC-EEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 174 l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~ 229 (410)
+++-.... .....+.++++|+.|++|..+....... .+--+....+|+||.|+.++
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 75444333 3344567888888888887532111100 00011233467888888776
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=7e-06 Score=79.22 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=49.5
Q ss_pred cccccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
++.+.+|+.|++.+. .++.+ .. +.++++|++|+++++ .+..+.+. ..++.|+.|++.++. +..+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i-----~~~l~~~~~L~~L~ls~N-~I~~i~~l---~~l~~L~~L~l~~N~-i~~~~--- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKI-----ENLLSSLVNLQVLDLSFN-KITKLEGL---STLTLLKELNLSGNL-ISDIS--- 156 (414)
T ss_pred cccccceeeeecccc-chhhc-----ccchhhhhcchheecccc-ccccccch---hhccchhhheeccCc-chhcc---
Confidence 666777777777765 34433 22 446777777777766 55555444 456667777777765 55544
Q ss_pred CCCCCCcccccCCCccEEeeccC
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDL 116 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~ 116 (410)
.+..++.|+.++++++
T Consensus 157 -------~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 157 -------GLESLKSLKLLDLSYN 172 (414)
T ss_pred -------CCccchhhhcccCCcc
Confidence 2333566677777666
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=1.9e-05 Score=80.06 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=44.6
Q ss_pred ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccc--------
Q 036454 103 FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQ-------- 163 (410)
Q Consensus 103 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~-------- 163 (410)
.+||+|..||+|++ +++.+... .++++|+.|.+++. -.+.+|+.||+|.........
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl~GI---S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNLSGI---SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hccCccceeecCCC-CccCcHHH---hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 34455555555554 33333111 24444444444443 234566666666544322210
Q ss_pred c-ccccccEEEEEeCCCccchhh-hhhhcccCceEEEec
Q 036454 164 A-QFHKLKILHFISDGSDFFQVG-LLQNIHNLEKLVLST 200 (410)
Q Consensus 164 ~-~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~ 200 (410)
. .+|+||.||.++........+ .+..=++|+.+.+-+
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 1 177888888755544433322 233345666655443
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=6.7e-06 Score=81.05 Aligned_cols=139 Identities=25% Similarity=0.211 Sum_probs=80.4
Q ss_pred cccccEEEE-EeCCCccch-hhhhhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCC
Q 036454 166 FHKLKILHF-ISDGSDFFQ-VGLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDS 242 (410)
Q Consensus 166 l~~L~~L~l-~~~~~~~~~-~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 242 (410)
.+.|+.|.+ .+....... ......+++|+.|.++++ ....... .........+.+|+.|+++.|..+ ... +.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~i-sd~---~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLV-TDI---GL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhcc-Cch---hH
Confidence 566777777 444444322 234567788888888873 2111111 001113445688888888887644 222 12
Q ss_pred c-cccccccceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 243 K-LDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 243 ~-~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
. ....+++|++|.+.+|. .+++ +......+++|++|++++|..+++.........+++|+.|.+..+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHhhCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 2 23347888888888886 5433 223345677888888888877755433334555777777665443
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.27 E-value=1.5e-05 Score=76.09 Aligned_cols=148 Identities=17% Similarity=0.244 Sum_probs=83.6
Q ss_pred CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCc
Q 036454 40 PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDL 119 (410)
Q Consensus 40 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 119 (410)
|..++.|..|..+.++.+ .+..++. .+ .++..|.++|++.+. +..+|. .+. +--|+.|-++++ ++
T Consensus 91 p~~~~~f~~Le~liLy~n-~~r~ip~-~i-~~L~~lt~l~ls~Nq-lS~lp~---------~lC-~lpLkvli~sNN-kl 155 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHN-CIRTIPE-AI-CNLEALTFLDLSSNQ-LSHLPD---------GLC-DLPLKVLIVSNN-KL 155 (722)
T ss_pred chHHHHHHHHHHHHHHhc-cceecch-hh-hhhhHHHHhhhccch-hhcCCh---------hhh-cCcceeEEEecC-cc
Confidence 444444555555555443 2222222 22 355555555555443 444443 111 123455555444 44
Q ss_pred cccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhh
Q 036454 120 TTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQN 189 (410)
Q Consensus 120 ~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~ 189 (410)
+.+|..+. ..+.|..|+.+.| ..+.+|+.|.+..|....++... .-.|..||++|+.+..+|.. +.+
T Consensus 156 ~~lp~~ig--~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~-fr~ 232 (722)
T KOG0532|consen 156 TSLPEEIG--LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVD-FRK 232 (722)
T ss_pred ccCCcccc--cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchh-hhh
Confidence 44444331 3344555555444 23357777778888777776665 34578888899999999975 488
Q ss_pred cccCceEEEecccccc
Q 036454 190 IHNLEKLVLSTCEYKK 205 (410)
Q Consensus 190 l~~L~~L~l~~~~~~~ 205 (410)
|..|+.|.+.+|.+..
T Consensus 233 m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhheeeeeccCCCCC
Confidence 9999999999876543
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.19 E-value=1.7e-05 Score=75.69 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=50.3
Q ss_pred ccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEE
Q 036454 148 LEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSL 225 (410)
Q Consensus 148 L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 225 (410)
|+.|.+++|.+...+... ...|..|+.+++.+..++. .++++.+|+.|.+..+++..++. ... .-.|..|
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~------El~-~LpLi~l 216 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPE------ELC-SLPLIRL 216 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCH------HHh-CCceeee
Confidence 455555555555444433 4555555555544444442 34556666666666665555443 111 2335555
Q ss_pred EeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454 226 KLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 226 ~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 260 (410)
+++ |+++ ..+ +..+..+..|++|.+.+|+
T Consensus 217 DfS-cNki-s~i----Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 217 DFS-CNKI-SYL----PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ecc-cCce-eec----chhhhhhhhheeeeeccCC
Confidence 554 3333 333 2335556666666666664
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=3.3e-05 Score=75.79 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=17.2
Q ss_pred cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
++.|+.|+++.+...+.. .+..+++|++|+++.|++..+
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV 224 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc
Confidence 444444444333333322 344455555555555444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.10 E-value=0.00063 Score=42.52 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=19.7
Q ss_pred cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceE
Q 036454 48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEI 89 (410)
Q Consensus 48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 89 (410)
+|++|+++++ .++++++. + +++++|++|+++++. ++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~-l-~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE-L-SNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH-G-TTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCC-CCcccCch-H-hCCCCCCEEEecCCC-CCCC
Confidence 5666666666 44455441 1 466666666666654 4444
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.89 E-value=0.0025 Score=64.83 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=69.9
Q ss_pred cceEEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchhccccCCCCcccc
Q 036454 250 NLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIV 328 (410)
Q Consensus 250 ~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 328 (410)
.++.|+++++. .-..++..+..+++|+.|+++++. +. .++ .....+++|+.|+++++.-...++..++.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~~l~~------ 488 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNS-IRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQ------ 488 (623)
T ss_pred EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCc-ccCcCC--hHHhCCCCCCEEECCCCCCCCCCchHHhc------
Confidence 36777787774 333456666777888888887763 43 343 34577788888888876555566766676
Q ss_pred ccccceeecCcCcccc-eecCCCcccCCCCccEEEEecCCCCcccC
Q 036454 329 FSKLKWLFLESSESIT-SFCSGNYAFSFPSLEDLIVENCPKLNTFS 373 (410)
Q Consensus 329 ~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 373 (410)
+++|+.|+++++. ++ .++.. .......+..+.+.+++.+...|
T Consensus 489 L~~L~~L~Ls~N~-l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 489 LTSLRILNLNGNS-LSGRVPAA-LGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCCEEECcCCc-ccccCChH-HhhccccCceEEecCCccccCCC
Confidence 8888888888754 33 33322 11123455667777666555433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.85 E-value=0.0013 Score=41.07 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=22.8
Q ss_pred ccceEEEEecccccccccccCccccCccCEEEEcccCCcccc
Q 036454 249 QNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISL 290 (410)
Q Consensus 249 ~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 290 (410)
++|++|++++| .++++++.++.+++|++|+++++ .++++
T Consensus 1 ~~L~~L~l~~N--~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN--QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS--S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC--CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 35666666666 45566555666667777777665 35444
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.00016 Score=69.82 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=33.8
Q ss_pred cccccEEEeeccCcccccccc-cccccEEEEEeCCCccchh-hhhhhcccCceEEEeccccccc
Q 036454 145 FANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQV-GLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 145 l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
++.|+.|++.+|.+..+.... +..|+.+++....+..... . +.++.+++.+.+.++.+..+
T Consensus 139 l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 345666666666666555544 5566666664444433332 1 35566777777766654443
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.74 E-value=9.2e-05 Score=72.82 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=48.9
Q ss_pred cccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCccc
Q 036454 145 FANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK 223 (410)
Q Consensus 145 l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~ 223 (410)
+|.++.|+++.|.+..+.... ++.|+.|||+.+....+|......+. |+.|.+.+|.+..+.. ..++.+|+
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-------ie~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-------IENLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-------HHhhhhhh
Confidence 445555555555554444322 55566666655444444433333333 5555565555444433 34455555
Q ss_pred EEEeCCcccccccccC-CCCccccccccceEEEEeccc
Q 036454 224 SLKLKKLWLIEEHLWN-PDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 224 ~L~l~~c~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 260 (410)
.|+++. +.+.. .....++.+..|++|.+.+|+
T Consensus 258 ~LDlsy-----Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 258 GLDLSY-----NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccchhH-----hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 555553 21110 011234445555555555554
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.59 E-value=0.0044 Score=63.01 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=73.9
Q ss_pred cccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcC
Q 036454 221 QIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTL 299 (410)
Q Consensus 221 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l 299 (410)
.++.|+|+++ .+....+..+..+++|+.|++++|. ....+|..++.+++|+.|+++++. +. .++ ...+.+
T Consensus 419 ~v~~L~L~~n-----~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP--~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQ-----GLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNS-FNGSIP--ESLGQL 489 (623)
T ss_pred EEEEEECCCC-----CccccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCC-CCCCCc--hHHhcC
Confidence 3677777763 3322224457788999999999985 334677778889999999998774 44 344 456788
Q ss_pred CCccEEEeccCcccchhccccCCCCccccccccceeecCcCccc
Q 036454 300 VQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESI 343 (410)
Q Consensus 300 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 343 (410)
++|+.|+++++.-...+|..++. .+.++..+.+.+.+.+
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~-----~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGG-----RLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCEEECcCCcccccCChHHhh-----ccccCceEEecCCccc
Confidence 99999999987655566655443 1345566777765433
No 59
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00046 Score=57.62 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=50.7
Q ss_pred ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccc
Q 036454 251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFS 330 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 330 (410)
++.++-+++. ....-...+..++.++.|.+..|..+.+.......+..++|+.|+|++|+.+++.-.. ....++
T Consensus 103 IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-----~L~~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-----CLLKLK 176 (221)
T ss_pred EEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-----HHHHhh
Confidence 4445555553 2222234455666677777777766665544333455677777777777776654211 111277
Q ss_pred ccceeecCcCcccce
Q 036454 331 KLKWLFLESSESITS 345 (410)
Q Consensus 331 ~L~~L~l~~c~~l~~ 345 (410)
+|+.|.+++.+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 777777777665543
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00031 Score=61.47 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=59.8
Q ss_pred CccccccEEEeeccCcccccccc-cccccEEEEEeCCCccch-hhhhhhcccCceEEEeccccccccccchhhccccccC
Q 036454 143 DVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQ-VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIA 220 (410)
Q Consensus 143 ~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 220 (410)
..+|.|+.|.++-|.+....+.. +.+|++|+++.+.+.++. ...+.++|+|+.|++..|........+--......+|
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 66788899999988888887777 999999999666555444 4567899999999998864322211000111244579
Q ss_pred cccEEEeC
Q 036454 221 QIKSLKLK 228 (410)
Q Consensus 221 ~L~~L~l~ 228 (410)
||+.|+=.
T Consensus 118 nLkKLDnv 125 (388)
T KOG2123|consen 118 NLKKLDNV 125 (388)
T ss_pred cchhccCc
Confidence 99988743
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.0039 Score=54.27 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=61.5
Q ss_pred cccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc--
Q 036454 190 IHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-- 267 (410)
Q Consensus 190 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-- 267 (410)
+..|+.|.+.++.+..+.. +-.+++||+|.++.-.. ....+-......+|+|++|++++|. +..+.
T Consensus 42 ~~~le~ls~~n~gltt~~~-------~P~Lp~LkkL~lsdn~~---~~~~~l~vl~e~~P~l~~l~ls~Nk--i~~lstl 109 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN-------FPKLPKLKKLELSDNYR---RVSGGLEVLAEKAPNLKVLNLSGNK--IKDLSTL 109 (260)
T ss_pred ccchhhhhhhccceeeccc-------CCCcchhhhhcccCCcc---cccccceehhhhCCceeEEeecCCc--ccccccc
Confidence 3556666666555544433 44567778887776100 2221222334556888888888884 33211
Q ss_pred cCccccCccCEEEEcccC--CcccccchhhhhcCCCccEEEeccCcc
Q 036454 268 PSSASFRNLTVLKVCNCW--QLISLVTPQTAKTLVQLRELRVSECNR 312 (410)
Q Consensus 268 ~~~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~l~~c~~ 312 (410)
.....+.+|.+|++..|+ ++.+- .......+|+|..|+-..+..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccccCC
Confidence 224567778888887774 22222 123456677888777655433
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.00082 Score=56.14 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=40.9
Q ss_pred hhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454 296 AKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL 369 (410)
Q Consensus 296 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 369 (410)
+..+++++.|.+.+|....+.....-. ..+++|+.|+|++|+++++-... ....+++|+.|.+++-+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence 355666777777777666554322111 13677777777777777765432 1234677777777665554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.80 E-value=0.017 Score=48.52 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=7.2
Q ss_pred hcCCCccEEEecc
Q 036454 297 KTLVQLRELRVSE 309 (410)
Q Consensus 297 ~~l~~L~~L~l~~ 309 (410)
..+|+|+.|+..+
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 4555555555554
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.75 E-value=0.017 Score=48.43 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=29.1
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCccccc-CCCccEEeeccC
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFI-FPSLTFLRLRDL 116 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~ 116 (410)
.+...++++++ .+..+... ..++.|..|.+..+. +..+.. .+.. +++|..|.+.++
T Consensus 42 d~~d~iDLtdN-dl~~l~~l---p~l~rL~tLll~nNr-It~I~p---------~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDNL---PHLPRLHTLLLNNNR-ITRIDP---------DLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccceeccccc-chhhcccC---CCccccceEEecCCc-ceeecc---------chhhhccccceEEecCc
Confidence 34555666655 23222222 355566666666554 555544 3333 356666666665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.00075 Score=59.13 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=45.9
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
+.+.+.|++.|| +++.+ +-+..|+.|..|.|+-+ .++.+.+. ..|.+|++|+++.+. +..+..-+
T Consensus 18 l~~vkKLNcwg~-~L~DI-----sic~kMp~lEVLsLSvN-kIssL~pl---~rCtrLkElYLRkN~-I~sldEL~---- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI-----SICEKMPLLEVLSLSVN-KISSLAPL---QRCTRLKELYLRKNC-IESLDELE---- 82 (388)
T ss_pred HHHhhhhcccCC-CccHH-----HHHHhcccceeEEeecc-ccccchhH---HHHHHHHHHHHHhcc-cccHHHHH----
Confidence 556666777666 33332 11236777777777655 45555554 567777777776654 44433211
Q ss_pred CCcccccCCCccEEeeccCCC
Q 036454 98 DAATKFIFPSLTFLRLRDLPD 118 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~ 118 (410)
-+.++|+|+.|=|..++.
T Consensus 83 ---YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 83 ---YLKNLPSLRTLWLDENPC 100 (388)
T ss_pred ---HHhcCchhhhHhhccCCc
Confidence 234456666665555543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.91 E-value=0.012 Score=51.39 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=6.9
Q ss_pred CCCccEEeeccC
Q 036454 105 FPSLTFLRLRDL 116 (410)
Q Consensus 105 l~~L~~L~l~~~ 116 (410)
+|+|+++.++++
T Consensus 90 ~P~l~~l~ls~N 101 (260)
T KOG2739|consen 90 APNLKVLNLSGN 101 (260)
T ss_pred CCceeEEeecCC
Confidence 356666666555
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.51 E-value=0.016 Score=45.55 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=34.1
Q ss_pred ccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEecccccc
Q 036454 146 ANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKK 205 (410)
Q Consensus 146 ~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 205 (410)
..|...++++|.+..+++.. ++.++.|.+..+.+.+.|.+ +..++.|+.|+++.+.+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcccc
Confidence 34555666666666554432 44555666655556666655 5666666666666655443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.55 E-value=1.1 Score=35.05 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=23.1
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEec
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK 258 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (410)
.+.++++|+.+.+.. .+..+.. ..+.++++|+.+.+.. .+ ..+ +...+..+++++.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~-----~~F~~~~~l~~i~~~~--~~-~~i---~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGE-----NAFSNCTSLKSINFPN--NL-TSI---GDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-T-----TTTTT-TT-SEEEESS--TT-SCE----TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeCh-----hhcccccccccccccc--cc-ccc---ceeeeecccccccccccc
Confidence 345555666666553 2223222 2344555566666654 12 222 112344555566666643
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.32 E-value=0.034 Score=43.84 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=54.1
Q ss_pred cceEEEEecccccc--cccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccc
Q 036454 250 NLEFLEVKKCALSL--ISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEI 327 (410)
Q Consensus 250 ~L~~L~l~~~~~~l--~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 327 (410)
.+..+++++|. .+ .+.+.....-..|+..++++. .+.+++. .....+|.++.|++.+ +.+.++|..++.
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~-kft~kf~t~t~lNl~~-neisdvPeE~Aa----- 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKFPK-KFTIKFPTATTLNLAN-NEISDVPEELAA----- 98 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhCCH-HHhhccchhhhhhcch-hhhhhchHHHhh-----
Confidence 45556677774 11 122233334455666777664 4666653 4456677788888876 577788877777
Q ss_pred cccccceeecCcCcccceec
Q 036454 328 VFSKLKWLFLESSESITSFC 347 (410)
Q Consensus 328 ~~~~L~~L~l~~c~~l~~~~ 347 (410)
+|.|+.|++++.+ +...+
T Consensus 99 -m~aLr~lNl~~N~-l~~~p 116 (177)
T KOG4579|consen 99 -MPALRSLNLRFNP-LNAEP 116 (177)
T ss_pred -hHHhhhcccccCc-cccch
Confidence 8888888888743 44443
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.31 E-value=0.2 Score=23.98 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=4.8
Q ss_pred CccEEEEecCC
Q 036454 357 SLEDLIVENCP 367 (410)
Q Consensus 357 ~L~~L~l~~c~ 367 (410)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555553
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.14 E-value=1.6 Score=34.05 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=24.0
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeecc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRD 115 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 115 (410)
.+.+|+.+.+.. .+..+....+ .++++|+++.+.+. +..++.. ....+++|+.+.+..
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F-~~~~~l~~i~~~~~--~~~i~~~--------~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAF-SNCTSLKSINFPNN--LTSIGDN--------AFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTT-TT-TT-SEEEESST--TSCE-TT--------TTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECC--CeeEeChhhc-cccccccccccccc--cccccee--------eeecccccccccccc
Confidence 455666666652 2344433332 45666666666542 5555431 333444566666643
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.70 E-value=0.25 Score=43.71 Aligned_cols=203 Identities=13% Similarity=0.040 Sum_probs=99.5
Q ss_pred cccccccCCcEEEecCccc--cc-cccc---cCCccccccCcccEEEeccCcCccccCc--hhHHhhhhccceEeecccc
Q 036454 13 THSGAATQLRELHVFHLPK--LT-KLWN---KDPQGKLIFRNLVVVRIFDCQSLKNIFP--TSIARSLLRLETLSIKDCG 84 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~--l~-~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~ 84 (410)
..+.+-.+|+..++++.-. .. ++.. ....-+-.+|+|+..+++++..-...++ ..+..+-..|++|.+++|.
T Consensus 52 ~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 52 NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 3466678888888887311 00 1100 0011223789999999998843222221 1233566789999999886
Q ss_pred CcceEeccCCC------CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCc
Q 036454 85 SVEEIVANDGR------GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIF 158 (410)
Q Consensus 85 ~l~~~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~ 158 (410)
+..+..+..+ +.. ..+..=|.|+......+ .+...+....+..+ ..-..|+++.+..|.+
T Consensus 132 -lGp~aG~rigkal~~la~n-KKaa~kp~Le~vicgrN-Rlengs~~~~a~~l-----------~sh~~lk~vki~qNgI 197 (388)
T COG5238 132 -LGPIAGGRIGKALFHLAYN-KKAADKPKLEVVICGRN-RLENGSKELSAALL-----------ESHENLKEVKIQQNGI 197 (388)
T ss_pred -CCccchhHHHHHHHHHHHH-hhhccCCCceEEEeccc-hhccCcHHHHHHHH-----------HhhcCceeEEeeecCc
Confidence 4433321000 000 01122366777766655 44333322111000 0002445555555444
Q ss_pred cccc-----ccc---cccccEEEEEeCCCccc----hhhhhhhcccCceEEEeccccccccccchh-hccccccCcccEE
Q 036454 159 TTWR-----QAQ---FHKLKILHFISDGSDFF----QVGLLQNIHNLEKLVLSTCEYKKIFSCEEV-EEHAEGIAQIKSL 225 (410)
Q Consensus 159 ~~~~-----~~~---l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L 225 (410)
..-. ... +.+|+.|++..+..+.. ....++..+.|+.|.+..|-+..-....+. .......|+|..|
T Consensus 198 rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L 277 (388)
T COG5238 198 RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPL 277 (388)
T ss_pred CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccc
Confidence 3210 001 66788888844333322 223456678899999988843322110000 0012345888888
Q ss_pred EeCC
Q 036454 226 KLKK 229 (410)
Q Consensus 226 ~l~~ 229 (410)
...-
T Consensus 278 ~~~Y 281 (388)
T COG5238 278 PGDY 281 (388)
T ss_pred ccch
Confidence 7654
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.45 E-value=0.72 Score=40.92 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.9
Q ss_pred ccccEEEeeccCcc
Q 036454 146 ANLEELTLSKCIFT 159 (410)
Q Consensus 146 ~~L~~L~i~~~~~~ 159 (410)
|.|+......|+..
T Consensus 157 p~Le~vicgrNRle 170 (388)
T COG5238 157 PKLEVVICGRNRLE 170 (388)
T ss_pred CCceEEEeccchhc
Confidence 66677666666653
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.14 E-value=0.45 Score=24.47 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=4.3
Q ss_pred ceEEEEecc
Q 036454 251 LEFLEVKKC 259 (410)
Q Consensus 251 L~~L~l~~~ 259 (410)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.99 E-value=0.46 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=9.2
Q ss_pred cccceeecCcCccccee
Q 036454 330 SKLKWLFLESSESITSF 346 (410)
Q Consensus 330 ~~L~~L~l~~c~~l~~~ 346 (410)
++|+.|+|++|+.+++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45555555555555543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.34 E-value=7.5 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=11.1
Q ss_pred ccCceEEEecccccccc
Q 036454 191 HNLEKLVLSTCEYKKIF 207 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~ 207 (410)
++|+.|++++|.+..+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56677777777666553
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.34 E-value=7.5 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=11.1
Q ss_pred ccCceEEEecccccccc
Q 036454 191 HNLEKLVLSTCEYKKIF 207 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~ 207 (410)
++|+.|++++|.+..+.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56677777777666553
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.26 E-value=11 Score=19.47 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.0
Q ss_pred ccceEEEEecc
Q 036454 249 QNLEFLEVKKC 259 (410)
Q Consensus 249 ~~L~~L~l~~~ 259 (410)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34444444444
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.08 E-value=23 Score=19.11 Aligned_cols=16 Identities=56% Similarity=0.598 Sum_probs=10.4
Q ss_pred ccCceEEEeccccccc
Q 036454 191 HNLEKLVLSTCEYKKI 206 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~ 206 (410)
++|+.|+++.+.+..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777665444
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.94 E-value=18 Score=35.73 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=45.3
Q ss_pred hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc--ccccceEEEEecccccccc
Q 036454 188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS--FLQNLEFLEVKKCALSLIS 265 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~l~~ 265 (410)
.+.+.+..+++++|++..+.. ..+.....|+|+.|+|++ +..+......++ ....|++|-+.+|+ ..++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~---~sslsq~apklk~L~LS~-----N~~~~~~~~el~K~k~l~Leel~l~GNP-lc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA---LSSLSQIAPKLKTLDLSH-----NHSKISSESELDKLKGLPLEELVLEGNP-LCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhh---hhHHHHhcchhheeeccc-----chhhhcchhhhhhhcCCCHHHeeecCCc-cccc
Confidence 356777778888776544432 111233458888888887 311111112222 33467778888876 5443
Q ss_pred cccC-------ccccCccCEEE
Q 036454 266 LVPS-------SASFRNLTVLK 280 (410)
Q Consensus 266 l~~~-------~~~~~~L~~L~ 280 (410)
.... -..||+|..|+
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhhHHHHHHHHHhcchheeec
Confidence 3211 13577777664
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=33.00 E-value=26 Score=18.95 Aligned_cols=17 Identities=35% Similarity=0.343 Sum_probs=8.6
Q ss_pred ccceEEEEecccccccccc
Q 036454 249 QNLEFLEVKKCALSLISLV 267 (410)
Q Consensus 249 ~~L~~L~l~~~~~~l~~l~ 267 (410)
++|+.|++++| .++++|
T Consensus 2 ~~L~~L~vs~N--~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNN--QLTSLP 18 (26)
T ss_pred cccceeecCCC--ccccCc
Confidence 34555555555 344443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.45 E-value=22 Score=35.07 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=35.4
Q ss_pred ccCcccEEEeccCcCcccc-CchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccc--cCCCccEEeeccCCCccc
Q 036454 45 IFRNLVVVRIFDCQSLKNI-FPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKF--IFPSLTFLRLRDLPDLTT 121 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~ 121 (410)
++|.+..++++++. +..+ ...+++...|+|+.|+|+++.+.-.... ++. +...|+.|-+.|++-.+.
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~---------el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSES---------ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchh---------hhhhhcCCCHHHeeecCCccccc
Confidence 56777777777662 2211 1223446677777777777632211111 111 234567777777654444
Q ss_pred c
Q 036454 122 F 122 (410)
Q Consensus 122 ~ 122 (410)
+
T Consensus 286 f 286 (585)
T KOG3763|consen 286 F 286 (585)
T ss_pred h
Confidence 3
Done!