Query 036454
Match_columns 410
No_of_seqs 157 out of 1728
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 22:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 99.9 7.6E-26 2.6E-30 227.9 26.0 338 14-388 52-457 (606)
2 3t6q_A CD180 antigen; protein- 99.9 1.9E-25 6.5E-30 224.9 25.4 363 2-390 61-510 (606)
3 1o6v_A Internalin A; bacterial 99.9 8.5E-25 2.9E-29 213.1 27.4 314 15-390 64-385 (466)
4 3vq2_A TLR4, TOLL-like recepto 99.9 8E-25 2.7E-29 220.4 25.4 204 166-390 349-555 (606)
5 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-25 3.4E-29 219.8 25.9 110 15-142 52-163 (606)
6 3rgz_A Protein brassinosteroid 99.9 3.8E-25 1.3E-29 228.4 22.6 264 107-390 369-714 (768)
7 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-24 4.4E-29 216.3 24.6 124 245-390 383-507 (549)
8 3rgz_A Protein brassinosteroid 99.9 5.1E-25 1.7E-29 227.4 21.5 308 45-390 198-548 (768)
9 4fmz_A Internalin; leucine ric 99.9 1.8E-24 6.1E-29 202.7 21.9 304 13-390 38-343 (347)
10 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-24 6.5E-29 215.1 23.1 185 6-206 13-211 (549)
11 2z63_A TOLL-like receptor 4, v 99.9 2.5E-24 8.5E-29 215.1 23.8 133 245-390 392-528 (570)
12 4eco_A Uncharacterized protein 99.9 9.3E-25 3.2E-29 220.6 18.4 152 219-390 432-597 (636)
13 1o6v_A Internalin A; bacterial 99.9 2.3E-23 7.8E-28 203.0 27.0 317 14-393 41-366 (466)
14 4eco_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 214.9 21.1 316 14-368 201-599 (636)
15 4ecn_A Leucine-rich repeat pro 99.9 7.6E-24 2.6E-28 218.4 22.3 350 14-391 443-838 (876)
16 1ziw_A TOLL-like receptor 3; i 99.9 6.6E-23 2.3E-27 209.2 28.2 129 15-160 45-185 (680)
17 3o6n_A APL1; leucine-rich repe 99.9 1.5E-23 5E-28 199.7 21.2 301 18-389 44-348 (390)
18 4fmz_A Internalin; leucine ric 99.9 4.2E-23 1.4E-27 193.3 23.5 294 3-367 49-344 (347)
19 3j0a_A TOLL-like receptor 5; m 99.9 3.3E-23 1.1E-27 216.1 24.8 58 329-390 479-536 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-22 7E-27 201.0 29.0 347 2-390 35-507 (562)
21 3v47_A TOLL-like receptor 5B a 99.9 8.3E-23 2.8E-27 198.5 25.2 343 18-390 29-405 (455)
22 2z63_A TOLL-like receptor 4, v 99.9 9.2E-23 3.1E-27 203.8 25.8 221 145-390 281-504 (570)
23 2z7x_B TOLL-like receptor 1, v 99.9 8E-23 2.7E-27 202.0 24.2 137 2-158 4-150 (520)
24 2id5_A Lingo-1, leucine rich r 99.9 1.4E-22 4.8E-27 198.1 24.6 298 17-367 30-331 (477)
25 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-22 9.8E-27 204.5 26.9 301 5-340 11-363 (680)
26 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-22 1.2E-26 208.2 27.0 113 15-142 44-158 (844)
27 2id5_A Lingo-1, leucine rich r 99.9 4.4E-22 1.5E-26 194.6 25.7 312 22-390 14-330 (477)
28 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.9E-27 193.6 20.4 286 15-368 65-351 (390)
29 2z7x_B TOLL-like receptor 1, v 99.9 6E-22 2.1E-26 195.7 25.7 173 191-391 302-479 (520)
30 4ecn_A Leucine-rich repeat pro 99.9 9.1E-23 3.1E-27 210.5 20.2 314 17-370 489-841 (876)
31 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5E-27 203.3 20.8 296 17-367 49-356 (597)
32 3v47_A TOLL-like receptor 5B a 99.9 3.2E-22 1.1E-26 194.3 22.6 340 2-372 34-411 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-22 2.1E-26 191.9 20.9 295 12-366 35-349 (457)
34 3oja_B Anopheles plasmodium-re 99.9 4.2E-22 1.4E-26 200.0 19.9 279 15-341 71-356 (597)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-20 3.4E-25 188.7 27.7 338 16-393 28-486 (562)
36 4g8a_A TOLL-like receptor 4; l 99.9 1E-20 3.5E-25 191.2 26.3 157 218-389 418-576 (635)
37 1jl5_A Outer protein YOPM; leu 99.9 4E-20 1.4E-24 179.0 24.2 251 102-407 149-422 (454)
38 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-20 4.3E-25 182.7 19.4 283 2-345 46-353 (457)
39 2ft3_A Biglycan; proteoglycan, 99.8 2.1E-20 7E-25 174.0 17.0 254 19-311 33-305 (332)
40 1jl5_A Outer protein YOPM; leu 99.8 3.5E-20 1.2E-24 179.4 18.4 303 15-391 30-368 (454)
41 4fcg_A Uncharacterized protein 99.8 9.2E-20 3.2E-24 169.1 19.2 202 166-388 103-309 (328)
42 1xku_A Decorin; proteoglycan, 99.8 2.1E-19 7.1E-24 167.0 20.6 278 18-340 30-329 (330)
43 1xku_A Decorin; proteoglycan, 99.8 5.4E-19 1.8E-23 164.2 23.2 291 45-388 29-327 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-19 5.5E-24 167.9 18.6 290 45-388 31-328 (332)
45 4fcg_A Uncharacterized protein 99.8 4E-19 1.4E-23 164.8 20.9 85 245-338 225-309 (328)
46 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-18 5.7E-23 174.9 26.8 110 271-391 442-553 (635)
47 3ogk_B Coronatine-insensitive 99.8 7.1E-21 2.4E-25 191.0 7.3 137 246-391 375-524 (592)
48 2p1m_B Transport inhibitor res 99.8 5E-21 1.7E-25 192.1 3.9 135 247-391 370-517 (594)
49 1z7x_W Ribonuclease inhibitor; 99.8 3.6E-21 1.2E-25 187.2 2.0 362 2-388 7-435 (461)
50 2z80_A TOLL-like receptor 2, v 99.8 6.5E-19 2.2E-23 165.2 16.7 264 9-311 42-312 (353)
51 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-21 1.3E-25 186.9 0.9 347 18-391 2-409 (461)
52 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-19 3.6E-24 168.0 9.6 249 45-349 32-281 (317)
53 3ogk_B Coronatine-insensitive 99.8 1.2E-19 4.2E-24 182.0 10.8 240 130-388 268-546 (592)
54 2p1m_B Transport inhibitor res 99.8 4.4E-20 1.5E-24 185.2 7.5 348 14-392 61-493 (594)
55 3g06_A SSPH2 (leucine-rich rep 99.8 4.5E-18 1.5E-22 169.9 21.7 251 18-341 39-295 (622)
56 1ogq_A PGIP-2, polygalacturona 99.8 5E-19 1.7E-23 163.1 12.3 251 19-316 50-307 (313)
57 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-17 4.1E-22 166.9 21.8 254 47-389 40-293 (622)
58 1ogq_A PGIP-2, polygalacturona 99.8 8.4E-18 2.9E-22 154.9 15.8 245 47-343 50-304 (313)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-18 3.9E-23 161.0 9.2 245 15-316 30-278 (317)
60 3zyi_A Leucine-rich repeat-con 99.8 2E-17 7E-22 160.3 18.1 223 18-285 74-301 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 2.1E-17 7.1E-22 159.7 17.8 225 15-284 60-289 (440)
62 3zyj_A Leucine-rich repeat-con 99.7 4.2E-17 1.5E-21 157.5 18.6 222 47-311 64-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.7 4.8E-17 1.7E-21 157.6 18.6 222 47-311 75-301 (452)
64 2z80_A TOLL-like receptor 2, v 99.7 3.6E-17 1.2E-21 153.3 16.3 270 18-341 30-312 (353)
65 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.2E-22 163.1 12.6 240 45-340 32-272 (487)
66 2z66_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 148.7 16.2 234 9-285 18-259 (306)
67 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-17 4.7E-22 151.4 11.7 202 46-285 31-236 (285)
68 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 146.6 15.6 242 50-366 10-258 (306)
69 1ozn_A Reticulon 4 receptor; N 99.7 6.4E-17 2.2E-21 146.9 11.9 216 5-260 18-236 (285)
70 3oja_A Leucine-rich immune mol 99.7 2.3E-16 8E-21 154.0 14.9 237 15-308 30-270 (487)
71 2xwt_C Thyrotropin receptor; s 99.6 6E-15 2.1E-19 130.2 16.8 197 168-388 32-234 (239)
72 2xwt_C Thyrotropin receptor; s 99.6 4.2E-15 1.4E-19 131.2 15.7 67 48-124 32-98 (239)
73 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 135.4 18.6 239 22-309 12-255 (350)
74 1h6u_A Internalin H; cell adhe 99.6 5.5E-15 1.9E-19 135.6 15.1 192 14-284 36-227 (308)
75 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.6E-20 140.8 9.8 250 44-340 40-306 (312)
76 1wwl_A Monocyte differentiatio 99.6 9.2E-16 3.1E-20 141.2 7.8 251 14-310 38-306 (312)
77 3rfs_A Internalin B, repeat mo 99.6 8.5E-16 2.9E-20 138.5 7.4 180 15-260 37-216 (272)
78 1p9a_G Platelet glycoprotein I 99.6 1.7E-14 6E-19 131.0 15.8 201 15-285 6-206 (290)
79 2z62_A TOLL-like receptor 4, v 99.6 2.6E-14 8.8E-19 129.0 16.7 86 186-284 144-234 (276)
80 1h6u_A Internalin H; cell adhe 99.6 1.6E-14 5.4E-19 132.6 15.2 196 45-318 39-234 (308)
81 2o6q_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 129.0 15.7 159 186-367 56-216 (270)
82 2ast_B S-phase kinase-associat 99.6 1.7E-15 5.8E-20 140.8 8.4 227 20-310 48-282 (336)
83 1p9a_G Platelet glycoprotein I 99.6 2.4E-14 8.1E-19 130.2 15.7 161 181-368 45-207 (290)
84 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 132.4 15.1 220 9-258 20-255 (350)
85 2ast_B S-phase kinase-associat 99.6 3.1E-15 1E-19 139.0 7.4 164 187-366 114-282 (336)
86 3rfs_A Internalin B, repeat mo 99.6 3.7E-15 1.3E-19 134.3 7.5 86 187-284 129-215 (272)
87 2o6q_A Variable lymphocyte rec 99.6 6E-14 2.1E-18 126.2 15.4 201 45-310 14-215 (270)
88 2z62_A TOLL-like receptor 4, v 99.6 6.5E-14 2.2E-18 126.4 15.0 199 146-367 28-235 (276)
89 4glp_A Monocyte differentiatio 99.5 1.7E-13 5.7E-18 125.9 12.6 207 166-390 90-304 (310)
90 2ca6_A RAN GTPase-activating p 99.5 4.9E-15 1.7E-19 140.5 0.6 118 186-311 182-314 (386)
91 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 116.0 13.4 170 149-339 17-188 (251)
92 2ca6_A RAN GTPase-activating p 99.4 1.6E-13 5.5E-18 130.0 7.8 164 191-364 159-338 (386)
93 1h6t_A Internalin B; cell adhe 99.4 8.4E-13 2.9E-17 120.0 12.0 170 15-260 42-211 (291)
94 4glp_A Monocyte differentiatio 99.4 3E-13 1E-17 124.2 8.9 193 45-260 89-305 (310)
95 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.9E-18 128.2 7.3 257 52-341 3-295 (362)
96 3goz_A Leucine-rich repeat-con 99.4 1.7E-13 5.8E-18 128.7 6.2 251 15-311 18-295 (362)
97 1h6t_A Internalin B; cell adhe 99.4 2.1E-12 7.2E-17 117.3 12.9 188 71-310 22-210 (291)
98 3m19_A Variable lymphocyte rec 99.4 2.8E-12 9.4E-17 113.9 13.0 172 19-229 14-188 (251)
99 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4.1E-17 130.6 11.4 63 45-123 19-81 (605)
100 1m9s_A Internalin B; cell inva 99.4 2E-12 6.9E-17 128.9 12.7 170 13-230 37-207 (605)
101 4ezg_A Putative uncharacterize 99.4 3.5E-12 1.2E-16 108.9 10.9 151 188-367 41-192 (197)
102 4ezg_A Putative uncharacterize 99.4 1.1E-11 3.6E-16 105.9 13.8 148 218-388 42-189 (197)
103 1xeu_A Internalin C; cellular 99.2 1.1E-11 3.7E-16 110.9 7.3 143 44-229 38-181 (263)
104 1xeu_A Internalin C; cellular 99.2 3.2E-11 1.1E-15 107.8 8.8 57 45-116 17-73 (263)
105 3cvr_A Invasion plasmid antige 99.2 1.9E-10 6.4E-15 113.6 14.1 122 168-319 121-249 (571)
106 3e6j_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 101.3 11.7 112 185-310 58-169 (229)
107 2o6s_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 100.5 10.6 129 168-310 29-158 (208)
108 2o6s_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 102.6 7.8 134 168-322 53-187 (208)
109 3cvr_A Invasion plasmid antige 99.1 2.4E-10 8.4E-15 112.8 13.1 182 20-260 60-241 (571)
110 1dce_A Protein (RAB geranylger 99.1 1.3E-12 4.6E-17 129.4 -4.1 212 45-307 347-567 (567)
111 2v9t_B SLIT homolog 2 protein 99.1 3.9E-10 1.3E-14 97.8 11.6 110 186-309 51-161 (220)
112 2xot_A Amphoterin-induced prot 99.1 3E-10 1E-14 106.4 11.5 134 47-206 39-178 (361)
113 1dce_A Protein (RAB geranylger 99.1 4.7E-13 1.6E-17 132.7 -8.5 127 191-337 441-567 (567)
114 2v70_A SLIT-2, SLIT homolog 2 99.1 5.4E-10 1.8E-14 97.0 11.8 109 187-309 53-162 (220)
115 2v9t_B SLIT homolog 2 protein 99.1 1.1E-09 3.6E-14 95.1 11.8 89 185-285 74-163 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.1 9.8E-10 3.4E-14 95.3 11.5 108 166-285 56-164 (220)
117 2xot_A Amphoterin-induced prot 99.0 5.9E-10 2E-14 104.4 9.4 170 108-310 20-199 (361)
118 2ell_A Acidic leucine-rich nuc 99.0 8E-10 2.8E-14 91.5 9.1 87 245-341 67-158 (168)
119 3e6j_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 94.6 11.4 60 49-123 21-80 (229)
120 2ell_A Acidic leucine-rich nuc 99.0 8.1E-10 2.8E-14 91.4 8.5 139 219-375 23-165 (168)
121 3sb4_A Hypothetical leucine ri 99.0 6.2E-09 2.1E-13 96.1 14.6 100 273-386 225-327 (329)
122 2je0_A Acidic leucine-rich nuc 99.0 7.5E-10 2.6E-14 89.7 6.0 14 191-204 17-30 (149)
123 3sb4_A Hypothetical leucine ri 98.9 4.5E-09 1.5E-13 97.0 11.0 183 72-280 100-327 (329)
124 2je0_A Acidic leucine-rich nuc 98.9 1.6E-09 5.5E-14 87.7 5.8 107 187-308 38-148 (149)
125 2wfh_A SLIT homolog 2 protein 98.9 1.3E-08 4.6E-13 86.1 10.4 35 47-84 31-65 (193)
126 1a9n_A U2A', U2A'; complex (nu 98.8 4.4E-09 1.5E-13 87.7 7.1 14 191-204 19-32 (176)
127 2wfh_A SLIT homolog 2 protein 98.8 1.8E-08 6.3E-13 85.3 10.0 121 151-284 15-136 (193)
128 1w8a_A SLIT protein; signaling 98.8 3.1E-08 1.1E-12 83.8 11.0 39 44-84 51-89 (192)
129 1a9n_A U2A', U2A'; complex (nu 98.8 8.4E-09 2.9E-13 86.0 7.2 106 191-311 42-151 (176)
130 2o6r_A Variable lymphocyte rec 98.8 2.6E-08 9E-13 83.0 9.9 105 168-284 29-134 (177)
131 1w8a_A SLIT protein; signaling 98.7 2.5E-08 8.5E-13 84.4 8.6 86 187-284 50-136 (192)
132 2o6r_A Variable lymphocyte rec 98.7 6E-08 2E-12 80.8 10.3 95 13-123 22-116 (177)
133 4fdw_A Leucine rich hypothetic 98.7 1.3E-06 4.6E-11 82.5 19.6 231 48-309 136-379 (401)
134 1ds9_A Outer arm dynein; leuci 98.6 7E-09 2.4E-13 88.3 2.2 108 186-310 43-150 (198)
135 4fdw_A Leucine rich hypothetic 98.6 3.4E-06 1.2E-10 79.7 20.9 254 45-339 111-379 (401)
136 4b8c_D Glucose-repressible alc 98.5 6.7E-08 2.3E-12 98.6 6.4 107 216-340 220-326 (727)
137 1ds9_A Outer arm dynein; leuci 98.5 6.9E-09 2.4E-13 88.3 -0.9 123 166-306 47-180 (198)
138 4b8c_D Glucose-repressible alc 98.5 9.5E-08 3.2E-12 97.5 7.1 107 187-310 220-326 (727)
139 3e4g_A ATP synthase subunit S, 98.5 7.6E-08 2.6E-12 79.1 4.7 89 250-345 62-154 (176)
140 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.8E-12 77.5 4.3 93 274-371 61-154 (176)
141 2r9u_A Variable lymphocyte rec 98.4 8.3E-07 2.8E-11 73.6 8.1 100 22-141 15-114 (174)
142 3g39_A Variable lymphocyte rec 98.4 7.1E-07 2.4E-11 73.7 7.6 21 186-206 49-69 (170)
143 4fs7_A Uncharacterized protein 98.4 2.3E-05 7.9E-10 73.9 18.9 164 190-385 229-393 (394)
144 2ra8_A Uncharacterized protein 98.4 1.1E-06 3.8E-11 81.7 9.5 40 166-205 278-321 (362)
145 3g39_A Variable lymphocyte rec 98.3 1.3E-06 4.4E-11 72.1 8.3 100 20-139 10-109 (170)
146 2r9u_A Variable lymphocyte rec 98.3 1.3E-06 4.6E-11 72.3 7.7 21 186-206 52-72 (174)
147 3un9_A NLR family member X1; l 98.3 1.2E-07 3.9E-12 88.9 0.9 171 17-206 70-254 (372)
148 2ra8_A Uncharacterized protein 98.3 1E-06 3.6E-11 81.9 6.8 37 329-366 278-317 (362)
149 4fs7_A Uncharacterized protein 98.3 6E-05 2.1E-09 71.0 18.7 124 244-388 248-374 (394)
150 3un9_A NLR family member X1; l 98.2 1.3E-07 4.5E-12 88.6 -0.3 14 190-203 125-138 (372)
151 2ifg_A High affinity nerve gro 97.9 2.4E-05 8.1E-10 72.4 8.8 102 23-142 12-113 (347)
152 4gt6_A Cell surface protein; l 97.7 0.0023 7.8E-08 60.1 18.6 125 215-364 260-386 (394)
153 2ifg_A High affinity nerve gro 97.7 5.7E-05 2E-09 69.7 7.0 59 166-229 30-89 (347)
154 4gt6_A Cell surface protein; l 97.5 0.018 6.3E-07 53.8 22.0 34 329-365 333-366 (394)
155 4h09_A Hypothetical leucine ri 97.0 0.074 2.5E-06 49.3 19.3 42 45-91 44-85 (379)
156 4h09_A Hypothetical leucine ri 97.0 0.093 3.2E-06 48.6 20.0 281 17-349 44-350 (379)
157 1io0_A Tropomodulin; LRR prote 96.5 0.00094 3.2E-08 55.5 2.0 121 185-310 30-161 (185)
158 3rw6_A Nuclear RNA export fact 96.4 0.0018 6E-08 57.1 3.6 19 188-206 167-185 (267)
159 1io0_A Tropomodulin; LRR prote 96.3 0.0027 9.1E-08 52.7 3.7 43 70-116 33-75 (185)
160 3rw6_A Nuclear RNA export fact 96.2 0.0029 1E-07 55.7 3.9 82 45-138 168-257 (267)
161 3rfe_A Platelet glycoprotein I 86.2 0.63 2.2E-05 35.7 3.7 34 168-201 32-65 (130)
162 3rfe_A Platelet glycoprotein I 80.9 2.5 8.6E-05 32.2 5.2 34 48-83 32-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 71.2 1.4 4.7E-05 36.5 1.3 119 187-309 37-166 (197)
164 1pgv_A TMD-1, tropomodulin TMD 69.1 2.3 7.9E-05 35.1 2.2 14 146-159 98-111 (197)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7.6e-26 Score=227.88 Aligned_cols=338 Identities=13% Similarity=0.041 Sum_probs=176.0
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
.++.+++|++|+++++. +..+ .|..+..+++|++|++++| .+....+..+ +++++|++|+++++. +..++.
T Consensus 52 ~~~~l~~L~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~l~~-- 122 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQ-IYWI---HEDTFQSQHRLDTLVLTAN-PLIFMAETAL-SGPKALKHLFFIQTG-ISSIDF-- 122 (606)
T ss_dssp TSTTCTTCSEEECTTCC-CCEE---CTTTTTTCTTCCEEECTTC-CCSEECTTTT-SSCTTCCEEECTTSC-CSCGGG--
T ss_pred HhccCccceEEECCCCc-ccee---ChhhccCccccCeeeCCCC-cccccChhhh-cccccccEeeccccC-cccCCc--
Confidence 35666777777777663 2221 1445566777777777766 4444444333 466777777776665 544422
Q ss_pred CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------Ccccccc--EEEeeccCcccc
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLE--ELTLSKCIFTTW 161 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~--~L~i~~~~~~~~ 161 (410)
..+..+++|++|+++++ .+..+...... .+++|++|++.++ ..+++|+ .|++++|.+...
T Consensus 123 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 123 ------IPLHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp ------SCCTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred ------chhccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 14556677777777766 34433222111 3667777777666 2344555 566666655444
Q ss_pred cccc--cc----------------------------------------------------cccEEEEEeCCCccchhhhh
Q 036454 162 RQAQ--FH----------------------------------------------------KLKILHFISDGSDFFQVGLL 187 (410)
Q Consensus 162 ~~~~--l~----------------------------------------------------~L~~L~l~~~~~~~~~~~~l 187 (410)
.+.. .. +|+.|++....+...+...+
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~ 274 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence 3322 11 34455554444445555556
Q ss_pred hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454 188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV 267 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~ 267 (410)
.++++|+.|++++|.+..++. .+..+++|++|+++++... .. ....+..+++|++|++++|. ....++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~------~l~~l~~L~~L~l~~n~l~-~~----~~~~~~~l~~L~~L~l~~n~-~~~~~~ 342 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPS------GLVGLSTLKKLVLSANKFE-NL----CQISASNFPSLTHLSIKGNT-KRLELG 342 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCS------SCCSCTTCCEEECTTCCCS-BG----GGGCGGGCTTCSEEECCSCS-SCCBCC
T ss_pred ccccCCCEEeccCCccCCCCh------hhcccccCCEEECccCCcC-cC----chhhhhccCcCCEEECCCCC-cccccc
Confidence 677777777777777665544 3455677777777764322 11 12234556666666666664 322333
Q ss_pred c-CccccCccCEEEEcccCCcccccc-hhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccce
Q 036454 268 P-SSASFRNLTVLKVCNCWQLISLVT-PQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITS 345 (410)
Q Consensus 268 ~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 345 (410)
. .+..+++|++|+++++. +..... ......+++|++|++++|.-....+..++. +++|+.|+++++. ++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~ 414 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE------CPQLELLDLAFTR-LKV 414 (606)
T ss_dssp SSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT------CTTCSEEECTTCC-EEC
T ss_pred hhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC------CccCCeEECCCCc-CCC
Confidence 2 24556666666665542 333210 123355566666666655332223333344 5556666655542 332
Q ss_pred ecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454 346 FCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~ 388 (410)
......+..+++|++|++++|.--...|..+..+++|++|+++
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 2222122345555555555553322333334445555555554
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.9e-25 Score=224.95 Aligned_cols=363 Identities=14% Similarity=0.077 Sum_probs=176.0
Q ss_pred cccccccCccc---cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceE
Q 036454 2 IFDLQEVNSEE---THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETL 78 (410)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 78 (410)
.++++...... ..++.+++|++|+++++. +... .|..+..+++|++|++++| .+..+.+..+ +++++|++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~-~~l~~L~~L 134 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFM---AETALSGPKALKHLFFIQT-GISSIDFIPL-HNQKTLESL 134 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEE---CTTTTSSCTTCCEEECTTS-CCSCGGGSCC-TTCTTCCEE
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCc-cccc---ChhhhcccccccEeecccc-CcccCCcchh-ccCCcccEE
Confidence 45566654432 347788999999998874 3322 1556678888888888888 4554433333 578888888
Q ss_pred eeccccCcceEeccCCC----------------CCCCcccccCCCcc--EEeeccCCCccccccCcccCCCC--------
Q 036454 79 SIKDCGSVEEIVANDGR----------------GNDAATKFIFPSLT--FLRLRDLPDLTTFYSGMHILECP-------- 132 (410)
Q Consensus 79 ~l~~~~~l~~~~~~~~~----------------~~~~~~~~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~~-------- 132 (410)
+++++. +..++...+. +.....+..+++|+ .|+++++ .+...+...+ ...
T Consensus 135 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~--~~~~L~~L~l~ 210 (606)
T 3t6q_A 135 YLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAF--DSAVFQSLNFG 210 (606)
T ss_dssp ECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTT--TTCEEEEEECT
T ss_pred ECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHh--hhccccccccC
Confidence 888775 5544211100 00001223333444 3444433 2222211111 111
Q ss_pred --------------------------------------------CceEEEEccC----------CccccccEEEeeccCc
Q 036454 133 --------------------------------------------ELRKLEVNHV----------DVFANLEELTLSKCIF 158 (410)
Q Consensus 133 --------------------------------------------~L~~L~l~~~----------~~l~~L~~L~i~~~~~ 158 (410)
+|++|++.++ ..+++|++|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 2333333333 1234445555555444
Q ss_pred ccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454 159 TTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH 236 (410)
Q Consensus 159 ~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 236 (410)
..++... +++|+.|++....+...+...+.++++|+.|++++|.+..... ...+..+++|++|+++++... ..
T Consensus 291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~-~~ 365 (606)
T 3t6q_A 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG----TGCLENLENLRELDLSHDDIE-TS 365 (606)
T ss_dssp SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC----SSTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc----hhhhhccCcCCEEECCCCccc-cc
Confidence 4333222 4455555554333333333334445555555555544321111 011334555555555553221 00
Q ss_pred ccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh
Q 036454 237 LWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI 316 (410)
Q Consensus 237 ~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 316 (410)
. .....+..+++|++|++++|. .....+..+..+++|++|+++++. +...........+++|++|++++|.-....
T Consensus 366 ~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 366 D--CCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp E--ESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred c--CcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 0 001224455666666666663 222223344556666666665552 333322223455666666666665433333
Q ss_pred ccccCCCCccccccccceeecCcCcccce--ecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 317 VANDGDADDEIVFSKLKWLFLESSESITS--FCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 317 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+..++. +++|++|++++++ ++. ++....+..+++|++|++++|.--...|..+..+++|++|+++++
T Consensus 442 ~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 442 EQLFDG------LPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTTTT------CTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HHHHhC------CCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 444444 6677777777654 222 122123345677777777666433333555556677777777644
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.5e-25 Score=213.14 Aligned_cols=314 Identities=17% Similarity=0.175 Sum_probs=185.6
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
+..+++|++|+++++. ++.+ +. +..+++|++|++++| .+..+++ ++++++|++|+++++. +..++
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~----~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---- 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDI----TP-LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNNQ-ITDID---- 128 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG----
T ss_pred hhhhcCCCEEECCCCc-cCCc----hh-hhccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCCC-CCCCh----
Confidence 3445555555555542 2221 11 345555555555555 3333322 1455555555555543 33332
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCcccccccc-c
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQAQ-F 166 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~~-l 166 (410)
.+..+++|++|+++++ .+..++. + ..+++|++|++.+. ..+++|+.|++++|......... +
T Consensus 129 ------~~~~l~~L~~L~l~~n-~l~~~~~--~-~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 198 (466)
T 1o6v_A 129 ------PLKNLTNLNRLELSSN-TISDISA--L-SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 198 (466)
T ss_dssp ------GGTTCTTCSEEEEEEE-EECCCGG--G-TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred ------HHcCCCCCCEEECCCC-ccCCChh--h-ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence 2445566666666655 3333322 1 24566666666443 34566777777777665554333 6
Q ss_pred ccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454 167 HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS 246 (410)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 246 (410)
++|+.|++........+. ++.+++|+.|++++|.+..+.. +..+++|++|+++++... . ...+.
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~--~-----~~~~~ 262 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLANNQIS--N-----LAPLS 262 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSSCCC--C-----CGGGT
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh-------hhcCCCCCEEECCCCccc--c-----chhhh
Confidence 777777775444444432 4567777777777776655432 456677888888774322 1 12256
Q ss_pred ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcc
Q 036454 247 FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDE 326 (410)
Q Consensus 247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 326 (410)
.+++|++|++++| .+..+++ +..+++|++|++++| .+..++. ...+++|++|++++|. +..++. +..
T Consensus 263 ~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~---- 329 (466)
T 1o6v_A 263 GLTKLTELKLGAN--QISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP-VSS---- 329 (466)
T ss_dssp TCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG-GGG----
T ss_pred cCCCCCEEECCCC--ccCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh-hcc----
Confidence 7788888888887 4555544 667788888888776 3555532 5678888888888863 333322 344
Q ss_pred ccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 327 IVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 327 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+++|+.|++++| .++.+. ....+++|++|++.+|.--...| ...+++|++++++++
T Consensus 330 --l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 330 --LTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp --CTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred --CccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 788888888886 455553 23468888888888875443334 556888888888743
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=8e-25 Score=220.39 Aligned_cols=204 Identities=15% Similarity=0.075 Sum_probs=121.2
Q ss_pred cccccEEEEEeCCCccch--hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454 166 FHKLKILHFISDGSDFFQ--VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK 243 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 243 (410)
+++|+.|+++...+.... ...+..+++|+.|++++|.+..+.. .+..+++|+.|+++++... ... ...
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------~~~~l~~L~~L~l~~n~l~-~~~---~~~ 418 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA------NFMGLEELQHLDFQHSTLK-RVT---EFS 418 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC------CCTTCTTCCEEECTTSEEE-STT---TTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh------hccCCCCCCeeECCCCccC-Ccc---Chh
Confidence 444444444333333221 2334555556666665555444432 3455667777777664322 111 113
Q ss_pred cccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCC
Q 036454 244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDA 323 (410)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 323 (410)
.+..+++|++|++++|. .....+..+..+++|++|++++|. +...........+++|++|++++|.-....+..++.
T Consensus 419 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~- 495 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT- 495 (606)
T ss_dssp TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-
T ss_pred hhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-
Confidence 45667778888888774 333345556677788888887763 433111134467788888888887444444455566
Q ss_pred CccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCC-CcceeEeccc
Q 036454 324 DDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTP-RLQAVQNWEL 390 (410)
Q Consensus 324 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~l~~~~~ 390 (410)
+++|++|+++++ .++..... .+..+++|++|++++| .++.+|..+..++ +|+++++++|
T Consensus 496 -----l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 496 -----LHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp -----CTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred -----cccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 888888888886 45555332 2346888888888887 4677887766666 5888888743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=9.8e-25 Score=219.76 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=64.9
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
+..+++|++|+++++ .++.+. |..+..+++|++|++++| .+..++|..+ +++++|++|+++++. +..++.
T Consensus 52 ~~~l~~L~~L~Ls~n-~l~~i~---~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~~--- 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRC-EIETIE---DKAWHGLHHLSNLILTGN-PIQSFSPGSF-SGLTSLENLVAVETK-LASLES--- 121 (606)
T ss_dssp TTTCTTCCEEECTTC-CCCEEC---TTTTTTCTTCCEEECTTC-CCCCCCTTSS-TTCTTCCEEECTTSC-CCCSSS---
T ss_pred ccCCccCcEEeCCCC-cccccC---HHHhhchhhcCEeECCCC-cccccChhhc-CCcccCCEEEccCCc-cccccc---
Confidence 555666666666665 233221 344556667777777666 3444444333 466677777776665 444432
Q ss_pred CCCCCcccccCCCccEEeeccCCCccc--cccCcccCCCCCceEEEEccC
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTT--FYSGMHILECPELRKLEVNHV 142 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~ 142 (410)
..+..+++|++|+++++ .+.. ++... ..+++|++|+++++
T Consensus 122 -----~~~~~l~~L~~L~L~~n-~l~~~~lp~~~--~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 122 -----FPIGQLITLKKLNVAHN-FIHSCKLPAYF--SNLTNLVHVDLSYN 163 (606)
T ss_dssp -----SCCTTCTTCCEEECCSS-CCCCCCCCGGG--GTCTTCCEEECCSS
T ss_pred -----cccCCCCCCCEEeCCCC-cccceechHhH--hhcCCCCEEEccCC
Confidence 25667778888888877 3432 23222 36788888888776
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=3.8e-25 Score=228.39 Aligned_cols=264 Identities=16% Similarity=0.036 Sum_probs=155.8
Q ss_pred CccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---cccccEEE
Q 036454 107 SLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILH 173 (410)
Q Consensus 107 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~ 173 (410)
+|+.|+++++......+.......+++|++|++.+| ..+++|+.|++++|.+....+.. +++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 555555555422212222221112556666666666 33456667777766665444332 66677777
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+............+..+++|+.|++++|.+....+ ..+..+++|+.|+++++... ...+..+..+++|++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-----SGLSNCTNLNWISLSNNRLT-----GEIPKWIGRLENLAI 518 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSSCCC-----SCCCGGGGGCTTCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC-----HHHhcCCCCCEEEccCCccC-----CcCChHHhcCCCCCE
Confidence 74444443333445666777777777776554332 13455677777777774322 222445667777777
Q ss_pred EEEecccccccccccCccccCccCEEEEcccCCcccccch----------------------------------------
Q 036454 254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP---------------------------------------- 293 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------------------------------- 293 (410)
|++++|. ....+|..+..+++|++|++++|.-...+|..
T Consensus 519 L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 519 LKLSNNS-FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EECCSSC-CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EECCCCc-ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 7777775 43456666677777777777765311122110
Q ss_pred ----------------------------hhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccc-
Q 036454 294 ----------------------------QTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESIT- 344 (410)
Q Consensus 294 ----------------------------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~- 344 (410)
.....+++|+.|+++++.-...+|..++. +++|+.|+++++. ++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~------l~~L~~L~Ls~N~-l~g 670 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS------MPYLFILNLGHND-ISG 670 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG------CTTCCEEECCSSC-CCS
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc------cccCCEEeCcCCc-cCC
Confidence 01123456777777776555566776666 7888888888754 44
Q ss_pred eecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 345 SFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 345 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
.++.. +..+++|+.|+++++.--..+|..+..+++|++++++.|
T Consensus 671 ~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 671 SIPDE--VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCChH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 34432 345788888888887555577877777888888888754
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.3e-24 Score=216.28 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=81.3
Q ss_pred ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454 245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD 324 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 324 (410)
+..+++|++|++++| .++.+|..+..+++|++|+++++. +..++. ...++|++|++++| .++.++ ..
T Consensus 383 ~~~l~~L~~L~Ls~N--~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N-~l~~~~---~~-- 449 (549)
T 2z81_A 383 LLTLKNLTSLDISRN--TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNN-NLDSFS---LF-- 449 (549)
T ss_dssp GGGCTTCCEEECTTC--CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSS-CCSCCC---CC--
T ss_pred hhcCCCCCEEECCCC--CCccCChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCC-Chhhhc---cc--
Confidence 455667777777776 455566656666677777776653 544432 22356777777765 333332 23
Q ss_pred ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC-CCCCCCCcceeEeccc
Q 036454 325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA-GVLKTPRLQAVQNWEL 390 (410)
Q Consensus 325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~~~~~ 390 (410)
+++|++|+++++ .++.++.. ..+++|++|++++| .++.++. .+..+++|+++++++|
T Consensus 450 ----l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 450 ----LPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp ----CTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ----CChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence 888999999986 56766642 35889999999887 5555544 4667899999999744
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5.1e-25 Score=227.42 Aligned_cols=308 Identities=16% Similarity=0.047 Sum_probs=167.2
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc-eEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
.+++|++|++++|......+. ++++++|++|+++++. +. .++. .+..+++|+.|+++++......+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~-l~~~~~~---------~l~~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNK-LSGDFSR---------AISTCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSC-CCSCHHH---------HTTTCSSCCEEECCSSCCEESCC
T ss_pred cCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCc-CCCcccH---------HHhcCCCCCEEECCCCcccCccC
Confidence 455555555555532222222 1455555555555554 32 2222 44556666666666663222222
Q ss_pred cCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCc-cchhhhhh
Q 036454 124 SGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSD-FFQVGLLQ 188 (410)
Q Consensus 124 ~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~-~~~~~~l~ 188 (410)
. ..+++|++|++.+| ..+++|++|++++|.+....+.. +++|+.|++...... .++...+.
T Consensus 265 ~----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 265 P----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp C----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred c----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 1 14566677766666 11266777777777665444332 666777777444333 55555566
Q ss_pred hcccCceEEEeccccccccccchhhccccc---------------------------cCcccEEEeCCcccccccccCCC
Q 036454 189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEG---------------------------IAQIKSLKLKKLWLIEEHLWNPD 241 (410)
Q Consensus 189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---------------------------l~~L~~L~l~~c~~l~~~~~~~~ 241 (410)
++++|+.|++++|.+....+. .+.. +++|++|+++++... ..+
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~-----~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~---- 410 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKI---- 410 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCT-----THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-EEC----
T ss_pred cCCCCCEEeCcCCccCccccH-----HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-ccc----
Confidence 677777777776655422220 1122 334444444443222 111
Q ss_pred CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC
Q 036454 242 SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG 321 (410)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 321 (410)
+..+..+++|++|++++|. ....++..++.+++|++|++++|.-...++ .....+++|++|++++|.-...++..++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 2345556666666666663 223445555666666666666653222232 2345667777777776654445555555
Q ss_pred CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
. +++|+.|+++++.-...++.. +..+++|++|++++|.-...+|..+..+++|+++++++|
T Consensus 488 ~------l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 488 N------CTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp G------CTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred c------CCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 5 777777777776432233322 235777777777777555567776667777777777643
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.8e-24 Score=202.67 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=211.2
Q ss_pred cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454 13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN 92 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 92 (410)
.....+++|++|++.++. +..+ ..+..+++|++|++++| .+..+++ +.++++|++|+++++. +..++
T Consensus 38 ~~~~~l~~L~~L~l~~~~-i~~~-----~~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~-- 104 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEK-VASI-----QGIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNK-ITDIS-- 104 (347)
T ss_dssp ECHHHHTTCSEEECCSSC-CCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG--
T ss_pred ccchhcccccEEEEeCCc-cccc-----hhhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCc-ccCch--
Confidence 346679999999999974 3332 34678999999999998 6666655 3789999999999985 66653
Q ss_pred CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-cc-ccccc
Q 036454 93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-AQ-FHKLK 170 (410)
Q Consensus 93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~~-l~~L~ 170 (410)
.+..+++|++|+++++ .+..++. . ..+++|++|++.+| ......+ .. +++|+
T Consensus 105 --------~~~~l~~L~~L~l~~n-~i~~~~~--~-~~l~~L~~L~l~~n--------------~~~~~~~~~~~l~~L~ 158 (347)
T 4fmz_A 105 --------ALQNLTNLRELYLNED-NISDISP--L-ANLTKMYSLNLGAN--------------HNLSDLSPLSNMTGLN 158 (347)
T ss_dssp --------GGTTCTTCSEEECTTS-CCCCCGG--G-TTCTTCCEEECTTC--------------TTCCCCGGGTTCTTCC
T ss_pred --------HHcCCCcCCEEECcCC-cccCchh--h-ccCCceeEEECCCC--------------CCcccccchhhCCCCc
Confidence 5677899999999987 4555443 1 25566666666555 2211111 11 67777
Q ss_pred EEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454 171 ILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN 250 (410)
Q Consensus 171 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 250 (410)
.|++........+. +..+++|+.|++++|.+..+.. +..+++|+.|+++++... . ...+..+++
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~--~-----~~~~~~~~~ 222 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQIT--D-----ITPVANMTR 222 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCC--C-----CGGGGGCTT
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-------ccCCCccceeecccCCCC--C-----CchhhcCCc
Confidence 77775555544442 6778889999988887766543 566788888888884322 1 123677888
Q ss_pred ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccc
Q 036454 251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFS 330 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 330 (410)
|++|++++| .++.++. +..+++|++|++++| .+..++ ....+++|++|++++| .++.++ .+.. ++
T Consensus 223 L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~-~~~~------l~ 287 (347)
T 4fmz_A 223 LNSLKIGNN--KITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS-VLNN------LS 287 (347)
T ss_dssp CCEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG-GGGG------CT
T ss_pred CCEEEccCC--ccCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh-hhcC------CC
Confidence 999999888 5666555 677888999999877 455552 4577888999999886 444442 3444 88
Q ss_pred ccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 331 KLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 331 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+|+.|++++|. ++..... .+..+++|++|++++|+ +..++. ...+++|++++++++
T Consensus 288 ~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 288 QLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp TCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred CCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 89999999874 4444332 23458899999998886 444444 556888999988743
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.9e-24 Score=215.08 Aligned_cols=185 Identities=16% Similarity=0.170 Sum_probs=126.7
Q ss_pred cccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccC
Q 036454 6 QEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGS 85 (410)
Q Consensus 6 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 85 (410)
+.....+.+-+.+++|++|+++++. ++.+. |..+..+++|++|++++| .+..+++..+ .++++|++|+++++.
T Consensus 13 ~~~~l~~ip~~~~~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~- 85 (549)
T 2z81_A 13 RSRSFTSIPSGLTAAMKSLDLSFNK-ITYIG---HGDLRACANLQVLILKSS-RINTIEGDAF-YSLGSLEHLDLSDNH- 85 (549)
T ss_dssp TTSCCSSCCSCCCTTCCEEECCSSC-CCEEC---SSTTSSCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-
T ss_pred CCCccccccccCCCCccEEECcCCc-cCccC---hhhhhcCCcccEEECCCC-CcCccChhhc-cccccCCEEECCCCc-
Confidence 3333344444455788999988874 44332 455678888999999888 5666655444 588889999988886
Q ss_pred cceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEee
Q 036454 86 VEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLS 154 (410)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~ 154 (410)
+..++. ..+..+++|++|+++++ .+..+.....-..+++|++|++.++ ..+++|++|+++
T Consensus 86 l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 86 LSSLSS--------SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CCSCCH--------HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred cCccCH--------HHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 665554 13677888888888887 4443321111136788888888776 335678888888
Q ss_pred ccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 155 KCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 155 ~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
+|.+....+.. +++|+.|++........+...+..+++|+.|++++|.+...
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 88877655544 67788888866666666665566788888888888876553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.5e-24 Score=215.15 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=86.0
Q ss_pred ccccccceEEEEecccccccccc--cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCccc-chhccccC
Q 036454 245 DSFLQNLEFLEVKKCALSLISLV--PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDG 321 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~ 321 (410)
+..+++|++|++++|. +...+ ..+..+++|++|++++|. +..... .....+++|++|++++|.-. ..++..++
T Consensus 392 ~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EETCTTCCEEECTTSE--EESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccCCCCEEEccCCc--cccccchhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 4556667777776663 33332 234567777777777663 333321 34466788888888877543 24556666
Q ss_pred CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccC-CCCCCCCCcceeEeccc
Q 036454 322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFS-AGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~l~~~~~ 390 (410)
. +++|+.|++++|. ++.+... .+..+++|++|++++| .+..++ ..+..+++|+++++++|
T Consensus 468 ~------l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 468 E------LRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp T------CTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred c------ccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 6 8888888888864 5665433 2346888999999887 455554 44567888999998843
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=9.3e-25 Score=220.65 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=91.3
Q ss_pred cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccc--------cCccCEEEEcccCCcccc
Q 036454 219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSAS--------FRNLTVLKVCNCWQLISL 290 (410)
Q Consensus 219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~ 290 (410)
+++|++|+++++ .+.......+..+++|++|++++| .++.++..... +++|++|+++++ ++..+
T Consensus 432 ~~~L~~L~Ls~N-----~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 432 GINVSSINLSNN-----QISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp CCCEEEEECCSS-----CCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred CCCCCEEECcCC-----ccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHhccccccccccCCccEEECcCC-cCCcc
Confidence 346666666652 222112223445677777777777 45455543322 127888888766 46555
Q ss_pred cchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCc-----c-cceecCCCcccCCCCccEEEEe
Q 036454 291 VTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSE-----S-ITSFCSGNYAFSFPSLEDLIVE 364 (410)
Q Consensus 291 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~L~~L~l~ 364 (410)
+.......+++|++|+++++ .++.++..+.. +++|+.|+++++. . ...++. .+..+++|++|+++
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~------l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLN------SSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIG 574 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGG------CSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECC
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcChhhhc------CCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECC
Confidence 53111137788888888875 44446666666 7888888885432 1 222322 23457888888888
Q ss_pred cCCCCcccCCCCCCCCCcceeEeccc
Q 036454 365 NCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 365 ~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+|.- ..+|..+. ++|++|++++|
T Consensus 575 ~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 575 SNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp SSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred CCcC-CccCHhHh--CcCCEEECcCC
Confidence 7744 77877653 78888888754
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.3e-23 Score=203.03 Aligned_cols=317 Identities=20% Similarity=0.253 Sum_probs=241.9
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
....+++++.|++.++. ++.+ +++..+++|++|++++| .+..+++ +.++++|++|+++++. +..++
T Consensus 41 ~~~~l~~l~~L~l~~~~-i~~l-----~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--- 106 (466)
T 1o6v_A 41 SQTDLDQVTTLQADRLG-IKSI-----DGVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADIT--- 106 (466)
T ss_dssp CHHHHHTCCEEECCSSC-CCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---
T ss_pred ChhHhccccEEecCCCC-CccC-----cchhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccCh---
Confidence 34558999999999884 3332 34678999999999999 5666655 2799999999999986 65554
Q ss_pred CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEeeccCcccccccc
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTLSKCIFTTWRQAQ 165 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i~~~~~~~~~~~~ 165 (410)
.+..+++|++|+++++ .+..++. + ..+++|++|++++| ..+++|+.|++++ ......+..
T Consensus 107 -------~~~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~~~ 174 (466)
T 1o6v_A 107 -------PLANLTNLTGLTLFNN-QITDIDP--L-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKPLA 174 (466)
T ss_dssp -------GGTTCTTCCEEECCSS-CCCCCGG--G-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGGGT
T ss_pred -------hhcCCCCCCEEECCCC-CCCCChH--H-cCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchhhc
Confidence 3667899999999998 6666654 2 47899999999988 5568899999974 333333333
Q ss_pred -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454 166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL 244 (410)
Q Consensus 166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 244 (410)
+++|+.|+++.......+ .+.++++|+.|++++|.+....+ ...+++|+.|+++++.-. . ...
T Consensus 175 ~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~--~-----~~~ 238 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLK--D-----IGT 238 (466)
T ss_dssp TCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCC--C-----CGG
T ss_pred cCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcc--c-----chh
Confidence 899999999666666654 47889999999999998776654 566899999999985322 1 235
Q ss_pred ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454 245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD 324 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 324 (410)
+..+++|++|++++| .+..+++ +..+++|++|+++++ .+..++. ...+++|++|++++|. ++.++. ++.
T Consensus 239 l~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~-- 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANN--QISNLAP-LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISP-ISN-- 307 (466)
T ss_dssp GGGCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGG-GGG--
T ss_pred hhcCCCCCEEECCCC--ccccchh-hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchh-hcC--
Confidence 778999999999999 4655554 678899999999887 4666542 5789999999999874 444433 455
Q ss_pred ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccchh
Q 036454 325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGED 393 (410)
Q Consensus 325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~~ 393 (410)
+++|+.|+++++. +++... ...+++|++|++++| .+..++ .+..+++|++++++++.-.
T Consensus 308 ----l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 308 ----LKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ----CTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred ----CCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccC
Confidence 8999999999974 555543 346999999999998 556564 4557999999999855433
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=5.6e-24 Score=214.93 Aligned_cols=316 Identities=13% Similarity=0.147 Sum_probs=152.0
Q ss_pred ccccccCCcEEEecCccccccc-----ccc---------CCcccc--ccCcccEEEeccCcCccccCchhHHhhhhccce
Q 036454 14 HSGAATQLRELHVFHLPKLTKL-----WNK---------DPQGKL--IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLET 77 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~-----~~~---------~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 77 (410)
.++++++|++|+++++. ++.. |.. .|..++ .+++|++|++++|.....+| ..+ +++++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL-KALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT-TTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH-hcCCCCCE
Confidence 37778888888888874 3320 100 377777 88888888888885444443 333 57788888
Q ss_pred EeeccccCcc--eEeccCCCCCCCcccccC------CCccEEeeccCCCcccccc--Ccc--------------------
Q 036454 78 LSIKDCGSVE--EIVANDGRGNDAATKFIF------PSLTFLRLRDLPDLTTFYS--GMH-------------------- 127 (410)
Q Consensus 78 L~l~~~~~l~--~~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~~l~~~~~--~~~-------------------- 127 (410)
|+++++..+. .+|. .+..+ ++|++|+++++ .+..++. ...
T Consensus 278 L~Ls~n~~l~~~~lp~---------~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 278 INVACNRGISGEQLKD---------DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EECTTCTTSCHHHHHH---------HHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred EECcCCCCCccccchH---------HHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 8887775233 2443 23332 55555555555 3333332 110
Q ss_pred -cCCCCCceEEEEccC---------Ccccc-ccEEEeeccCcccccccc----cccccEEEEEeCCCccchhhhhh----
Q 036454 128 -ILECPELRKLEVNHV---------DVFAN-LEELTLSKCIFTTWRQAQ----FHKLKILHFISDGSDFFQVGLLQ---- 188 (410)
Q Consensus 128 -~~~~~~L~~L~l~~~---------~~l~~-L~~L~i~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~l~---- 188 (410)
-..+++|++|+++++ ..+++ |++|++++|.+..++... +++|+.|+++...+.......+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 012333333433333 11223 444444444433222211 12344444432222221111122
Q ss_pred ---hcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc-------ccccceEEEEec
Q 036454 189 ---NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS-------FLQNLEFLEVKK 258 (410)
Q Consensus 189 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-------~~~~L~~L~l~~ 258 (410)
.+++|+.|++++|.+..+.. ..+..+++|++|+++++... .+ ...... .+++|++|++++
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~-----~~~~~l~~L~~L~Ls~N~l~--~i---~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPK-----ELFSTGSPLSSINLMGNMLT--EI---PKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCT-----HHHHTTCCCSEEECCSSCCS--BC---CSSSSEETTEECTTGGGCCEEECCS
T ss_pred ccccCCCCCEEECcCCccCcCCH-----HHHccCCCCCEEECCCCCCC--Cc---CHHHhccccccccccCCccEEECcC
Confidence 33455555555554443322 11233566666666653211 11 111111 122666666666
Q ss_pred ccccccccccCcc--ccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc------CcccchhccccCCCCcccccc
Q 036454 259 CALSLISLVPSSA--SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE------CNRLEEIVANDGDADDEIVFS 330 (410)
Q Consensus 259 ~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~------c~~l~~~~~~~~~~~~~~~~~ 330 (410)
| .++.++..+. .+++|++|+++++ .+..++ .....+++|++|++++ +.-...++..++. ++
T Consensus 498 N--~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~------l~ 566 (636)
T 4eco_A 498 N--KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL------CP 566 (636)
T ss_dssp S--CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG------CS
T ss_pred C--cCCccChhhhhccCCCcCEEECCCC-CCCCcC--hhhhcCCCCCEEECCCCcccccCcccccChHHHhc------CC
Confidence 6 3445555444 5666666666554 344443 2334566666666643 2223344444444 66
Q ss_pred ccceeecCcCcccceecCCCcccCCCCccEEEEecCCC
Q 036454 331 KLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPK 368 (410)
Q Consensus 331 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 368 (410)
+|+.|+++++. ++.++... .++|++|++++|+.
T Consensus 567 ~L~~L~Ls~N~-l~~ip~~~----~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 567 SLTQLQIGSND-IRKVNEKI----TPNISVLDIKDNPN 599 (636)
T ss_dssp SCCEEECCSSC-CCBCCSCC----CTTCCEEECCSCTT
T ss_pred CCCEEECCCCc-CCccCHhH----hCcCCEEECcCCCC
Confidence 66666666643 35554432 35666666666543
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=7.6e-24 Score=218.45 Aligned_cols=350 Identities=15% Similarity=0.111 Sum_probs=245.4
Q ss_pred ccccccCCcEEEecCcccccc-----ccc---------cCCcccc--ccCcccEEEeccCcCccccCchhHHhhhhccce
Q 036454 14 HSGAATQLRELHVFHLPKLTK-----LWN---------KDPQGKL--IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLET 77 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~-----~~~---------~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 77 (410)
.++++++|+.|+++++. ++. .|. ..|..++ .+++|++|++++|.....+| ..+ +++++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l-~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFL-YDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGG-GGCSSCCE
T ss_pred HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHH-hCCCCCCE
Confidence 48889999999999985 333 011 1488877 99999999999996555554 333 79999999
Q ss_pred EeeccccCcc--eEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC--------Cccc
Q 036454 78 LSIKDCGSVE--EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV--------DVFA 146 (410)
Q Consensus 78 L~l~~~~~l~--~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~--------~~l~ 146 (410)
|+++++..+. .+|.... .. ......+++|+.|+++++ .+..+|. ..+ ..+++|+.|+++++ ..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~-~L-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWT-RL-ADDEDTGPKIQIFYMGYN-NLEEFPASASL-QKMVKLGLLDCVHNKVRHLEAFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHH-HH-HHCTTTTTTCCEEECCSS-CCCBCCCHHHH-TTCTTCCEEECTTSCCCBCCCCCTTS
T ss_pred EECcCCCCcccccchHHHH-hh-hhcccccCCccEEEeeCC-cCCccCChhhh-hcCCCCCEEECCCCCcccchhhcCCC
Confidence 9999985344 3554100 00 002234569999999998 5556665 122 37899999999988 4567
Q ss_pred cccEEEeeccCcccccccc--ccc-ccEEEEEeCCCccchhhhhhhc--ccCceEEEeccccccccccchhhccccccCc
Q 036454 147 NLEELTLSKCIFTTWRQAQ--FHK-LKILHFISDGSDFFQVGLLQNI--HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQ 221 (410)
Q Consensus 147 ~L~~L~i~~~~~~~~~~~~--l~~-L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 221 (410)
+|+.|++++|.+..++... +++ |+.|+++.+.+..+|. .+..+ ++|+.|++++|.+....+..........+++
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 8999999999988555433 777 9999997666666663 33444 4599999999987654331000011123468
Q ss_pred ccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccc--------cCccCEEEEcccCCcccccch
Q 036454 222 IKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSAS--------FRNLTVLKVCNCWQLISLVTP 293 (410)
Q Consensus 222 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~ 293 (410)
|+.|+++++ .+..........+++|+.|++++| .+..++..... +++|++|++++| ++..++..
T Consensus 675 L~~L~Ls~N-----~L~~lp~~~~~~l~~L~~L~Ls~N--~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~ 746 (876)
T 4ecn_A 675 ASTVTLSYN-----EIQKFPTELFATGSPISTIILSNN--LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD 746 (876)
T ss_dssp EEEEECCSS-----CCCSCCHHHHHTTCCCSEEECCSC--CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG
T ss_pred cCEEEccCC-----cCCccCHHHHccCCCCCEEECCCC--cCCccChHHhccccccccccCCccEEECCCC-CCccchHH
Confidence 999999984 332122233457899999999999 56677764433 338999999888 57777632
Q ss_pred hhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCc-----ccc-eecCCCcccCCCCccEEEEecCC
Q 036454 294 QTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSE-----SIT-SFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 294 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~-~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
.....+++|+.|++++| .+..++..+.. +++|+.|++++++ .+. .++. .+..+++|++|++++|.
T Consensus 747 l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~------L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYN-CFSSFPTQPLN------SSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND 817 (876)
T ss_dssp GSTTTCTTCCEEECCSS-CCSSCCCGGGG------CTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred hhhccCCCcCEEEeCCC-CCCccchhhhc------CCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC
Confidence 21148999999999986 55567777777 9999999998743 222 3332 23569999999999985
Q ss_pred CCcccCCCCCCCCCcceeEecccc
Q 036454 368 KLNTFSAGVLKTPRLQAVQNWELG 391 (410)
Q Consensus 368 ~l~~~~~~~~~~~~L~~l~~~~~~ 391 (410)
- ..+|..+. ++|+.|++++|.
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCT
T ss_pred C-CccCHhhc--CCCCEEECCCCC
Confidence 5 88998864 799999998554
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=6.6e-23 Score=209.20 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=67.7
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
++.+++|++|+++++. ++.+ .|..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.
T Consensus 45 ~~~l~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~--- 114 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNT-ISKL---EPELCQKLPMLKVLNLQHN-ELSQLSDKTF-AFCTNLTELHLMSNS-IQKIKN--- 114 (680)
T ss_dssp GGGGTTCSEEECCSSC-CCCC---CTTHHHHCTTCCEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCS---
T ss_pred HhCCCcCcEEECCCCc-cCcc---CHHHHhcccCcCEEECCCC-ccCccChhhh-ccCCCCCEEECCCCc-cCccCh---
Confidence 5556666666666552 2221 1344456666666666666 4444444322 456666666666654 444432
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------------CccccccEEEeeccCccc
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------------DVFANLEELTLSKCIFTT 160 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------------~~l~~L~~L~i~~~~~~~ 160 (410)
..+..+++|++|+++++ .+...+...+ ..+++|++|++.++ ...++|++|++++|.+..
T Consensus 115 -----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 115 -----NPFVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp -----CTTTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred -----hHccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 13455666777776665 3333333222 24566666666655 012456666666655443
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-23 Score=199.70 Aligned_cols=301 Identities=16% Similarity=0.152 Sum_probs=167.9
Q ss_pred ccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG 96 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 96 (410)
+++++.|++.++ .++.+ |.. +..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 44 l~~l~~l~l~~~-~l~~l----~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~----- 110 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP----- 110 (390)
T ss_dssp GCCCSEEEEESC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-----
T ss_pred cCCceEEEecCC-chhhC----ChhHhcccccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCCC-CCcCCH-----
Confidence 566777777665 33333 333 346677777777666 4455544333 466777777776665 554443
Q ss_pred CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454 97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH 173 (410)
Q Consensus 97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~ 173 (410)
..+..+++|++|+++++ .+..++...+. .+ ++|++|++++|.+....+.. +++|+.|+
T Consensus 111 ---~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 111 ---HVFQNVPLLTVLVLERN-DLSSLPRGIFH-NT--------------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred ---HHhcCCCCCCEEECCCC-ccCcCCHHHhc-CC--------------CCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 13455667777777766 44444443322 34 44555555555554444322 56666666
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+....+...+ +..+++|+.|+++++.+..+.. .++|++|+++++... .+ .....++|++
T Consensus 172 l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~----------~~~L~~L~l~~n~l~--~~------~~~~~~~L~~ 230 (390)
T 3o6n_A 172 LSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI----------PIAVEELDASHNSIN--VV------RGPVNVELTI 230 (390)
T ss_dssp CCSSCCSBCC---GGGCTTCSEEECCSSCCSEEEC----------CSSCSEEECCSSCCC--EE------ECCCCSSCCE
T ss_pred CCCCcCCccc---cccccccceeecccccccccCC----------CCcceEEECCCCeee--ec------cccccccccE
Confidence 6554444443 3456677777777665544322 356777777663221 11 1123456777
Q ss_pred EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454 254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK 333 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~ 333 (410)
|++++| .++.. +.+..+++|++|+++++ .+..... .....+++|++|+++++ .++.++..... +++|+
T Consensus 231 L~l~~n--~l~~~-~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l~~L~ 298 (390)
T 3o6n_A 231 LKLQHN--NLTDT-AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALNLYGQP------IPTLK 298 (390)
T ss_dssp EECCSS--CCCCC-GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS-CCCEEECSSSC------CTTCC
T ss_pred EECCCC--CCccc-HHHcCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCC-cCcccCcccCC------CCCCC
Confidence 777776 34433 34556677777777665 3444422 33456677777777764 44455544444 67777
Q ss_pred eeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecc
Q 036454 334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWE 389 (410)
Q Consensus 334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~ 389 (410)
.|+++++ .++.++.. ...+++|++|++.+|+ +..++ ...+++|++|++++
T Consensus 299 ~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 299 VLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp EEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred EEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCC
Confidence 7777775 35554432 2346777777776663 44454 33466777777763
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.2e-23 Score=193.31 Aligned_cols=294 Identities=16% Similarity=0.152 Sum_probs=200.5
Q ss_pred ccccccCccc-cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454 3 FDLQEVNSEE-THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK 81 (410)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 81 (410)
+++.+..... ..++.+++|++|+++++ .++.+ +. +..+++|++|++++| .+..++. +.++++|++|+++
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDI----SP-LSNLVKLTNLYIGTN-KITDISA---LQNLTNLRELYLN 118 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEECT
T ss_pred EEEeCCccccchhhhhcCCccEEEccCC-ccccc----hh-hhcCCcCCEEEccCC-cccCchH---HcCCCcCCEEECc
Confidence 3444443333 23788999999999998 44433 33 679999999999999 5665533 3799999999999
Q ss_pred cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccc
Q 036454 82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTW 161 (410)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~ 161 (410)
++. +..++ .+..+++|+.|+++++......+. + ..+++|++|++.+| .....
T Consensus 119 ~n~-i~~~~----------~~~~l~~L~~L~l~~n~~~~~~~~--~-~~l~~L~~L~l~~~--------------~~~~~ 170 (347)
T 4fmz_A 119 EDN-ISDIS----------PLANLTKMYSLNLGANHNLSDLSP--L-SNMTGLNYLTVTES--------------KVKDV 170 (347)
T ss_dssp TSC-CCCCG----------GGTTCTTCCEEECTTCTTCCCCGG--G-TTCTTCCEEECCSS--------------CCCCC
T ss_pred CCc-ccCch----------hhccCCceeEEECCCCCCcccccc--h-hhCCCCcEEEecCC--------------CcCCc
Confidence 986 66654 466789999999999976655433 1 24555555555544 44333
Q ss_pred cccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCC
Q 036454 162 RQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNP 240 (410)
Q Consensus 162 ~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 240 (410)
.+.. +++|+.|++........+. +..+++|+.|+++++.+..+.. +..+++|++|+++++.-. .
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~--~---- 235 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKIT--D---- 235 (347)
T ss_dssp GGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCC--C----
T ss_pred hhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccC--C----
Confidence 3322 6677777775544544443 5677888888888877665543 556788888888875322 1
Q ss_pred CCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454 241 DSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND 320 (410)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 320 (410)
...+..+++|++|++++| .++.+ +....+++|++|++++| .+..++ ....+++|++|++++|.-....+..+
T Consensus 236 -~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 236 -LSPLANLSQLTWLEIGTN--QISDI-NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp -CGGGTTCTTCCEEECCSS--CCCCC-GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred -CcchhcCCCCCEEECCCC--ccCCC-hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChhHh
Confidence 122667788888888888 45554 34667788888888777 465553 35778888888888875444444555
Q ss_pred CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454 321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
+. +++|+.|++++|+ ++.... ...+++|++|++++|+
T Consensus 308 ~~------l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GG------LTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp HT------CTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred hc------cccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 55 8888888888875 555544 2358888888888774
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=216.06 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=38.3
Q ss_pred ccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
+++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+|.... .++|+.|++++|
T Consensus 479 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~~L~~L~Ls~N 536 (844)
T 3j0a_A 479 LSHLQVLYLNHN-YLNSLPPG-VFSHLTALRGLSLNSN-RLTVLSHNDL-PANLEILDISRN 536 (844)
T ss_dssp BCCEECCCCCHH-HHTTCCTT-SSSSCCSCSEEEEESC-CCSSCCCCCC-CSCCCEEEEEEE
T ss_pred cccccEEECCCC-cccccChh-HccchhhhheeECCCC-CCCccChhhh-hccccEEECCCC
Confidence 567777777764 45555543 2456888888888876 6666665554 377777777643
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2e-22 Score=200.96 Aligned_cols=347 Identities=15% Similarity=0.094 Sum_probs=208.0
Q ss_pred cccccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454 2 IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 81 (410)
+++++.....+.+....++|++|+++++. ++.+ .+..+..+++|++|++++| .+..+++..+ .++++|++|+++
T Consensus 35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~-i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls 108 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLPPRTKALSLSQNS-ISEL---RMPDISFLSELRVLRLSHN-RIRSLDFHVF-LFNQDLEYLDVS 108 (562)
T ss_dssp EEECTTSCCCSCCTTSCTTCCEEECCSSC-CCCC---CGGGTTTCTTCCEEECCSC-CCCEECTTTT-TTCTTCCEEECT
T ss_pred EEEcCCCCCccCCCCCCCCcCEEECCCCC-cccc---ChhhhccCCCccEEECCCC-CCCcCCHHHh-CCCCCCCEEECC
Confidence 34555555555555556899999999884 4433 1356778999999999988 6666655544 688999999999
Q ss_pred cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC-------Cccccc--cEE
Q 036454 82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV-------DVFANL--EEL 151 (410)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~-------~~l~~L--~~L 151 (410)
++. +..+|. . .+++|++|+++++ .+..++. ..+ ..+++|++|+++++ ..+++| +.|
T Consensus 109 ~N~-l~~lp~---------~--~l~~L~~L~Ls~N-~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L 174 (562)
T 3a79_B 109 HNR-LQNISC---------C--PMASLRHLDLSFN-DFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174 (562)
T ss_dssp TSC-CCEECS---------C--CCTTCSEEECCSS-CCSBCCCCGGG-GGCTTCCEEEEECSBCCTTTTGGGTTSCEEEE
T ss_pred CCc-CCccCc---------c--ccccCCEEECCCC-CccccCchHhh-cccCcccEEecCCCccccCchhhhhhceeeEE
Confidence 887 888875 3 6788888888887 4555442 222 36788888888877 233455 888
Q ss_pred EeeccCc--ccccccc-----------------------------cccccEEEEEeCC----------------------
Q 036454 152 TLSKCIF--TTWRQAQ-----------------------------FHKLKILHFISDG---------------------- 178 (410)
Q Consensus 152 ~i~~~~~--~~~~~~~-----------------------------l~~L~~L~l~~~~---------------------- 178 (410)
++++|.+ ....+.. +++|+.|++....
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 8887766 2221111 2334444442211
Q ss_pred ------Cccchh-h--hhhhcccCceEEEeccccc-cccccc----------------------hh--------------
Q 036454 179 ------SDFFQV-G--LLQNIHNLEKLVLSTCEYK-KIFSCE----------------------EV-------------- 212 (410)
Q Consensus 179 ------~~~~~~-~--~l~~l~~L~~L~l~~~~~~-~~~~~~----------------------~~-------------- 212 (410)
...... . .....++|+.|++++|.+. .++... ..
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 000000 0 0011125555555555433 111100 00
Q ss_pred ----------hcc-ccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc---ccCccccCccCE
Q 036454 213 ----------EEH-AEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL---VPSSASFRNLTV 278 (410)
Q Consensus 213 ----------~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l---~~~~~~~~~L~~ 278 (410)
+.. ...+++|++|+++++ .+....+..+..+++|++|++++| .++.+ +..+..+++|++
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQN-----VFTDSVFQGCSTLKRLQTLILQRN--GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSS-----CCCTTTTTTCCSCSSCCEEECCSS--CCCBTTHHHHTTTTCTTCCE
T ss_pred EEEccCCCcccccCccCCCCceEEECCCC-----ccccchhhhhcccCCCCEEECCCC--CcCCcccchhhhcCCCCCCE
Confidence 000 134566777777663 222222344566777777777777 34433 234556677777
Q ss_pred EEEcccCCccc-ccchhhhhcCCCccEEEeccCcccchhccccCCCCccccc-cccceeecCcCcccceecCCCcccCCC
Q 036454 279 LKVCNCWQLIS-LVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVF-SKLKWLFLESSESITSFCSGNYAFSFP 356 (410)
Q Consensus 279 L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~ 356 (410)
|+++++. +.. ++. .....+++|++|++++|.-...++.. + ++|+.|+++++ .++.++... ..++
T Consensus 408 L~l~~N~-l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~--~~l~ 473 (562)
T 3a79_B 408 LDVSLNS-LNSHAYD-RTCAWAESILVLNLSSNMLTGSVFRC---------LPPKVKVLDLHNN-RIMSIPKDV--THLQ 473 (562)
T ss_dssp EECTTSC-CBSCCSS-CCCCCCTTCCEEECCSSCCCGGGGSS---------CCTTCSEEECCSS-CCCCCCTTT--TSSC
T ss_pred EECCCCc-CCCccCh-hhhcCcccCCEEECCCCCCCcchhhh---------hcCcCCEEECCCC-cCcccChhh--cCCC
Confidence 7776653 443 332 23355677777777776432333221 3 58889998886 677776653 2689
Q ss_pred CccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454 357 SLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL 390 (410)
Q Consensus 357 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~ 390 (410)
+|++|+++++ .++.+|.. +..+++|+++++++|
T Consensus 474 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 474 ALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 9999999886 66778876 667899999999854
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.3e-23 Score=198.47 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=234.8
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
.++|++|+++++. ++.+ .|..+..+++|++|++++|.....+++..+ .++++|++|+++++. +..++.
T Consensus 29 ~~~l~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L~Ls~n~-l~~~~~------ 96 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDYNQ-FLQLET------ 96 (455)
T ss_dssp CTTCCEEECCSSC-CCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEEECTTCT-TCEECT------
T ss_pred CCccCEEEecCCc-cCcC---ChhHhccCccccEEECcCCcccceECcccc-cccccCCEEeCCCCc-cCccCh------
Confidence 3789999999984 4432 156678999999999999955445545443 689999999999987 666643
Q ss_pred CCcccccCCCccEEeeccCCCccc-cccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTT-FYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ 165 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~ 165 (410)
..+..+++|++|+++++ .+.. .+....-..+++|++|+++++ ..+++|++|++++|.+....+..
T Consensus 97 --~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 97 --GAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp --TTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred --hhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 16678899999999998 4443 222221236889999999888 24578899999998887665544
Q ss_pred -----cccccEEEEEeCCCccchhhh--------hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454 166 -----FHKLKILHFISDGSDFFQVGL--------LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL 232 (410)
Q Consensus 166 -----l~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 232 (410)
..+|+.|++........+... +..+++|+.|++++|.+....+. .-......++|+.|+++++..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH--HHHHHTTTCCEEEEECTTCTT
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh--hhhccccccceeeEeeccccc
Confidence 256778887444433333221 23557899999999876654331 000112237899999987644
Q ss_pred ccccc------cCCCCcccc--ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccE
Q 036454 233 IEEHL------WNPDSKLDS--FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRE 304 (410)
Q Consensus 233 l~~~~------~~~~~~~~~--~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 304 (410)
. ... .......+. ..++|++|++++|. .....+..+..+++|++|+++++ .+..++. ..+..+++|++
T Consensus 252 ~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~ 327 (455)
T 3v47_A 252 M-GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLK 327 (455)
T ss_dssp T-SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCE
T ss_pred c-ccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCE
Confidence 3 111 000001111 24789999999995 33334556788999999999887 4665532 34578899999
Q ss_pred EEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcc
Q 036454 305 LRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQ 383 (410)
Q Consensus 305 L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~ 383 (410)
|++++|.-....+..++. +++|+.|+++++ .++.+... .+..+++|++|++++| .++.+|.. +..+++|+
T Consensus 328 L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFEN------LDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp EECCSSCCCEECGGGGTT------CTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred EECCCCccCCcChhHhcC------cccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCccc
Confidence 999987443333555666 899999999996 46666543 2456899999999886 56667654 45789999
Q ss_pred eeEeccc
Q 036454 384 AVQNWEL 390 (410)
Q Consensus 384 ~l~~~~~ 390 (410)
+|++++|
T Consensus 399 ~L~l~~N 405 (455)
T 3v47_A 399 KIWLHTN 405 (455)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 9999843
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.2e-23 Score=203.78 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=109.3
Q ss_pred cccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcc
Q 036454 145 FANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQI 222 (410)
Q Consensus 145 l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 222 (410)
+++|+.|++++|....++... + +|+.|++.......++. ..+++|+.|.++++....... ...+++|
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~-------~~~~~~L 349 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS-------EVDLPSL 349 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCC-------CCBCTTC
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccccc-------cccCCCC
Confidence 345566666655554433322 4 56666664444444442 345666666666655443333 2445666
Q ss_pred cEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCc
Q 036454 223 KSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQL 302 (410)
Q Consensus 223 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 302 (410)
++|+++++... ... .....+..+++|++|++++| .+..+++.+..+++|++|+++++. +...........+++|
T Consensus 350 ~~L~l~~n~l~-~~~--~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 350 EFLDLSRNGLS-FKG--CCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CEEECCSSCCB-EEE--EEEHHHHTCSCCCEEECCSC--SEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred CEEeCcCCccC-ccc--cccccccccCccCEEECCCC--ccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence 66666653211 000 00122345566666666666 344444445556666666665542 3333221233555666
Q ss_pred cEEEeccCcccchhccccCCCCccccccccceeecCcCcccc-eecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCC
Q 036454 303 RELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESIT-SFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPR 381 (410)
Q Consensus 303 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 381 (410)
++|++++|.-....+..+.. +++|+.|++++|.-.. .++. .+..+++|++|++++|.--...|..+..+++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp CEEECTTSCCEECCTTTTTT------CTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEEeCcCCcccccchhhhhc------CCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 66666665433334444444 6666666666654221 2221 2234666666666665333223455555666
Q ss_pred cceeEeccc
Q 036454 382 LQAVQNWEL 390 (410)
Q Consensus 382 L~~l~~~~~ 390 (410)
|++|+++++
T Consensus 496 L~~L~l~~n 504 (570)
T 2z63_A 496 LQVLNMASN 504 (570)
T ss_dssp CCEEECCSS
T ss_pred CCEEeCCCC
Confidence 666666543
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8e-23 Score=202.00 Aligned_cols=137 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred cccccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454 2 IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 81 (410)
++|+++....+.+....++|++|+++++. ++.+ .|..+..+++|++|++++| .+..+.+..+ +++++|++|+++
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNY-ISEL---WTSDILSLSKLRILIISHN-RIQYLDISVF-KFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSC-CCCC---CHHHHTTCTTCCEEECCSS-CCCEEEGGGG-TTCTTCCEEECC
T ss_pred eEecCCCCcccccccccccccEEECCCCc-cccc---ChhhccccccccEEecCCC-ccCCcChHHh-hcccCCCEEecC
Confidence 35666665555554445899999999884 3322 1345678899999999988 5666655444 688999999999
Q ss_pred cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC-------Cccccc--cEE
Q 036454 82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV-------DVFANL--EEL 151 (410)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~-------~~l~~L--~~L 151 (410)
++. ++.+|. . .+++|++|+++++ .+..++. ..+ ..+++|++|+++++ ..+++| +.|
T Consensus 78 ~N~-l~~lp~---------~--~l~~L~~L~L~~N-~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 78 HNK-LVKISC---------H--PTVNLKHLDLSFN-AFDALPICKEF-GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143 (520)
T ss_dssp SSC-CCEEEC---------C--CCCCCSEEECCSS-CCSSCCCCGGG-GGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred CCc-eeecCc---------c--ccCCccEEeccCC-ccccccchhhh-ccCCcceEEEecCcccchhhccccccceeeEE
Confidence 886 888875 3 5778888888877 4443221 222 35778888888776 334555 777
Q ss_pred EeeccCc
Q 036454 152 TLSKCIF 158 (410)
Q Consensus 152 ~i~~~~~ 158 (410)
++++|.+
T Consensus 144 ~l~~n~l 150 (520)
T 2z7x_B 144 LLVLGET 150 (520)
T ss_dssp EEEECTT
T ss_pred Eeecccc
Confidence 7777665
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=198.09 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=152.9
Q ss_pred cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454 17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG 96 (410)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 96 (410)
..++++.|+++++ .++.+. +..+..+++|++|++++| .+..+.+..+ .++++|++|+++++. +..++.
T Consensus 30 ~~~~l~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~----- 97 (477)
T 2id5_A 30 IPTETRLLDLGKN-RIKTLN---QDEFASFPHLEELELNEN-IVSAVEPGAF-NNLFNLRTLGLRSNR-LKLIPL----- 97 (477)
T ss_dssp CCTTCSEEECCSS-CCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCSCCT-----
T ss_pred CCCCCcEEECCCC-ccceEC---HhHccCCCCCCEEECCCC-ccCEeChhhh-hCCccCCEEECCCCc-CCccCc-----
Confidence 3456666666665 233221 334456666666666666 4444434333 456666666666654 554443
Q ss_pred CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454 97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH 173 (410)
Q Consensus 97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~ 173 (410)
..+..+++|+.|+++++ .+.......+. .+ ++|++|++++|.+....+.. +++|+.|+
T Consensus 98 ---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 98 ---GVFTGLSNLTKLDISEN-KIVILLDYMFQ-DL--------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp ---TSSTTCTTCCEEECTTS-CCCEECTTTTT-TC--------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ---ccccCCCCCCEEECCCC-ccccCChhHcc-cc--------------ccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 12345566666666665 33333222221 23 44455555555444433322 55666666
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+....+...+...+.++++|+.|+++++.+..+.. ..+..+++|+.|+++++..+ ..+. .......+|++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~~~~-~~~~----~~~~~~~~L~~ 228 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHWPYL-DTMT----PNCLYGLNLTS 228 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECCTTC-CEEC----TTTTTTCCCSE
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCCccc-cccC----cccccCccccE
Confidence 65555555555556666666666666666554432 12445566666666665544 3331 11122336666
Q ss_pred EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454 254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL 332 (410)
Q Consensus 254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L 332 (410)
|++++| .++.++. .+..+++|++|+++++. +..++. .....+++|++|+++++.-....+..+.. +++|
T Consensus 229 L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L 298 (477)
T 2id5_A 229 LSITHC--NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRG------LNYL 298 (477)
T ss_dssp EEEESS--CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBTT------CTTC
T ss_pred EECcCC--cccccCHHHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCccceECHHHhcC------cccC
Confidence 666666 3444442 23455666666665552 444432 23355566666666664332222334444 5666
Q ss_pred ceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454 333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
+.|+++++ .++.++.. .+..+++|++|++.+++
T Consensus 299 ~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 66666664 35544433 23345666666665543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.9e-22 Score=204.48 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=188.9
Q ss_pred ccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454 5 LQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG 84 (410)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 84 (410)
.+.....+.+....+++++|+++++. ++.+. +..+..+++|++|+++++ .+..+.+..+ +++++|++|+++++.
T Consensus 11 cs~~~L~~ip~~~~~~l~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 11 CSHLKLTQVPDDLPTNITVLNLTHNQ-LRRLP---AANFTRYSQLTSLDVGFN-TISKLEPELC-QKLPMLKVLNLQHNE 84 (680)
T ss_dssp CCSSCCSSCCSCSCTTCSEEECCSSC-CCCCC---GGGGGGGTTCSEEECCSS-CCCCCCTTHH-HHCTTCCEEECCSSC
T ss_pred CCCCCccccccccCCCCcEEECCCCC-CCCcC---HHHHhCCCcCcEEECCCC-ccCccCHHHH-hcccCcCEEECCCCc
Confidence 33333334443334799999999984 44331 345789999999999998 5666656544 799999999999986
Q ss_pred CcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEee
Q 036454 85 SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLS 154 (410)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~ 154 (410)
+..++. ..+..+++|++|+++++ .+..++...+. .+++|++|+++++ ..+++|++|+++
T Consensus 85 -l~~l~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 85 -LSQLSD--------KTFAFCTNLTELHLMSN-SIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp -CCCCCT--------TTTTTCTTCSEEECCSS-CCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred -cCccCh--------hhhccCCCCCEEECCCC-ccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 777764 24678899999999998 56666655443 7899999999988 357799999999
Q ss_pred ccCcccccccc-----cccccEEEEEeCCCccchhhhhhhcc---------------------------cCceEEEeccc
Q 036454 155 KCIFTTWRQAQ-----FHKLKILHFISDGSDFFQVGLLQNIH---------------------------NLEKLVLSTCE 202 (410)
Q Consensus 155 ~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~l~~l~---------------------------~L~~L~l~~~~ 202 (410)
+|.+....+.. +++|+.|++........+...+..++ +|+.|+++++.
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 99887665532 47899999955555555444444444 44555555554
Q ss_pred cccccccchhhcccccc--CcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-cccCccccCccCEE
Q 036454 203 YKKIFSCEEVEEHAEGI--AQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVL 279 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L 279 (410)
+....+ ..+.++ ++|+.|+++++... .+ ....+..+++|++|++++|. +.. .+..+..+++|++|
T Consensus 234 l~~~~~-----~~~~~l~~~~L~~L~Ls~n~l~--~~---~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 234 LSTTSN-----TTFLGLKWTNLTMLDLSYNNLN--VV---GNDSFAWLPQLEYFFLEYNN--IQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCEECT-----TTTGGGGGSCCCEEECTTSCCC--EE---CTTTTTTCTTCCEEECCSCC--BSEECTTTTTTCTTCCEE
T ss_pred ccccCh-----hHhhccCcCCCCEEECCCCCcC--cc---CcccccCcccccEeeCCCCc--cCccChhhhcCCCCccEE
Confidence 443322 122333 34788888774322 11 22345667788888888774 333 33445667777777
Q ss_pred EEcccCCcc-----cccc--hhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454 280 KVCNCWQLI-----SLVT--PQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS 340 (410)
Q Consensus 280 ~l~~c~~l~-----~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 340 (410)
+++++..-. .++. ......+++|++|+++++.-....+..+.. +++|+.|+++++
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n 363 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------LINLKYLSLSNS 363 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT------CTTCCEEECTTC
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc------ccCCcEEECCCC
Confidence 776542110 1110 012345666777777665322222222333 555666665553
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=3.6e-22 Score=208.19 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=56.9
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce-EeccC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE-IVAND 93 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~ 93 (410)
++.+++|++|+++++.....+. |..+..+++|++|++++| .+..+.|..+ +++++|++|++++|. +.. ++..
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~n~-l~~~~~~~- 116 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSS-KIYFLHPDAF-QGLFHLFELRLYFCG-LSDAVLKD- 116 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTC-CCCEECTTSS-CSCSSCCCEECTTCC-CSSCCSTT-
T ss_pred CcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCC-cCcccCHhHc-cCCcccCEeeCcCCC-CCcccccC-
Confidence 4555555555555553222211 333445556666666555 3333333332 455556666665554 332 2210
Q ss_pred CCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV 142 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~ 142 (410)
..+..+++|++|+++++ .+..... ..+ ..+++|++|+++++
T Consensus 117 ------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~-~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 117 ------GYFRNLKALTRLDLSKN-QIRSLYLHPSF-GKLNSLKSIDFSSN 158 (844)
T ss_dssp ------CCCSSCSSCCEEEEESC-CCCCCCCCGGG-GTCSSCCEEEEESS
T ss_pred ------ccccccCCCCEEECCCC-cccccccchhH-hhCCCCCEEECCCC
Confidence 12556677777777776 3333322 122 35677777777666
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.4e-22 Score=194.59 Aligned_cols=312 Identities=19% Similarity=0.194 Sum_probs=230.4
Q ss_pred cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454 22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT 101 (410)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 101 (410)
+.++..+. .++.+ |.++ .+++++|+++++ .+..+++..+ .++++|++|+++++. +..+.. ..
T Consensus 14 ~~v~c~~~-~l~~i----p~~~--~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~~~~--------~~ 75 (477)
T 2id5_A 14 RAVLCHRK-RFVAV----PEGI--PTETRLLDLGKN-RIKTLNQDEF-ASFPHLEELELNENI-VSAVEP--------GA 75 (477)
T ss_dssp TEEECCSC-CCSSC----CSCC--CTTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECTTSC-CCEECT--------TT
T ss_pred CEEEeCCC-CcCcC----CCCC--CCCCcEEECCCC-ccceECHhHc-cCCCCCCEEECCCCc-cCEeCh--------hh
Confidence 45555553 34444 5543 468999999988 6666655544 689999999999886 777643 15
Q ss_pred cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCC
Q 036454 102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDG 178 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~ 178 (410)
+..+++|++|+++++ .+..++...+. .+ ++|++|++++|.+....+.. +++|+.|++..+.
T Consensus 76 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 76 FNNLFNLRTLGLRSN-RLKLIPLGVFT-GL--------------SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp TTTCTTCCEEECCSS-CCCSCCTTSST-TC--------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred hhCCccCCEEECCCC-cCCccCccccc-CC--------------CCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 677899999999987 56666554332 33 55666666666665554433 8899999997777
Q ss_pred CccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEec
Q 036454 179 SDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK 258 (410)
Q Consensus 179 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (410)
+.......+.++++|+.|++++|.+..+.. ..+..+++|+.|+++++... .+ ....+..+++|++|++++
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~i~--~~---~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNIN--AI---RDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCH-----HHHTTCTTCCEEEEESCCCC--EE---CTTCSCSCTTCCEEEEEC
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccCh-----hHhcccCCCcEEeCCCCcCc--Ee---ChhhcccCcccceeeCCC
Confidence 777776778899999999999998776643 23567899999999985332 22 234567889999999999
Q ss_pred ccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeec
Q 036454 259 CALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFL 337 (410)
Q Consensus 259 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l 337 (410)
|. .+..++.......+|++|+++++ +++.++. .....+++|++|+++++. ++.++ ..+.. +++|+.|++
T Consensus 210 ~~-~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~------l~~L~~L~L 279 (477)
T 2id5_A 210 WP-YLDTMTPNCLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGSMLHE------LLRLQEIQL 279 (477)
T ss_dssp CT-TCCEECTTTTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTTSCTT------CTTCCEEEC
T ss_pred Cc-cccccCcccccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChhhccc------cccCCEEEC
Confidence 98 78878777777779999999887 5776653 456889999999999874 44443 34555 899999999
Q ss_pred CcCcccceecCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454 338 ESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL 390 (410)
Q Consensus 338 ~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~ 390 (410)
+++ .++.+... .+..+++|++|++++| .++.++.. +..+++|++|++++|
T Consensus 280 ~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 280 VGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 995 57776554 3457999999999987 66667654 457899999999854
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-22 Score=193.56 Aligned_cols=286 Identities=15% Similarity=0.133 Sum_probs=193.7
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
+..+++|++|+++++. ++.+. +..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.
T Consensus 65 ~~~l~~L~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~--- 134 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ-IEEID---TYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR--- 134 (390)
T ss_dssp HHHCCCCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT---
T ss_pred hcccccCcEEECCCCc-ccccC---hhhccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCCc-cCcCCH---
Confidence 5778999999999984 44331 446779999999999999 5666666544 689999999999986 877775
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF 174 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l 174 (410)
..+..+++|++|+++++ .+..++...+. .+++|++|++ ++|.+.......+++|+.|++
T Consensus 135 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~l--------------~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 135 -----GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQL--------------SSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCBCCTTTTS-SCTTCCEEEC--------------CSSCCSBCCGGGCTTCSEEEC
T ss_pred -----HHhcCCCCCcEEECCCC-ccCccChhhcc-CCCCCCEEEC--------------CCCcCCccccccccccceeec
Confidence 13467899999999998 55555444332 4455555554 444444443333666777776
Q ss_pred EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454 175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL 254 (410)
Q Consensus 175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L 254 (410)
.......++ ..++|+.|+++++.+..+.. ..+++|+.|+++++ .+. ....+..+++|++|
T Consensus 194 ~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n-----~l~--~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 194 SYNLLSTLA-----IPIAVEELDASHNSINVVRG--------PVNVELTILKLQHN-----NLT--DTAWLLNYPGLVEV 253 (390)
T ss_dssp CSSCCSEEE-----CCSSCSEEECCSSCCCEEEC--------CCCSSCCEEECCSS-----CCC--CCGGGGGCTTCSEE
T ss_pred ccccccccC-----CCCcceEEECCCCeeeeccc--------cccccccEEECCCC-----CCc--ccHHHcCCCCccEE
Confidence 444443322 23578888888877666533 23477888888873 331 12456777888888
Q ss_pred EEeccccccccc-ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454 255 EVKKCALSLISL-VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK 333 (410)
Q Consensus 255 ~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~ 333 (410)
++++|. +..+ +..+..+++|++|+++++ ++..++. ....+++|++|++++| .+..++..++. +++|+
T Consensus 254 ~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l~~L~ 321 (390)
T 3o6n_A 254 DLSYNE--LEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQPQ------FDRLE 321 (390)
T ss_dssp ECCSSC--CCEEESGGGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGHHH------HTTCS
T ss_pred ECCCCc--CCCcChhHccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCccccc------cCcCC
Confidence 888884 4443 455667788888888776 4665542 3356788888888876 55566655555 78888
Q ss_pred eeecCcCcccceecCCCcccCCCCccEEEEecCCC
Q 036454 334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPK 368 (410)
Q Consensus 334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 368 (410)
.|++++++ ++.++.. .+++|++|++.+++.
T Consensus 322 ~L~L~~N~-i~~~~~~----~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 322 NLYLDHNS-IVTLKLS----THHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSC-CCCCCCC----TTCCCSEEECCSSCE
T ss_pred EEECCCCc-cceeCch----hhccCCEEEcCCCCc
Confidence 88888854 6665533 478888888877643
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=6e-22 Score=195.70 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=120.4
Q ss_pred ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc---cc
Q 036454 191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS---LV 267 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~---l~ 267 (410)
++|+.|+++++.+..... ...+++|++|+++++... ...+..+..+++|++|++++|. ++. ++
T Consensus 302 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~ 367 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLT-----DTVFENCGHLTELETLILQMNQ--LKELSKIA 367 (520)
T ss_dssp CCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCC-----TTTTTTCCCCSSCCEEECCSSC--CCBHHHHH
T ss_pred CceeEEEcCCCccccccc-------hhhCCcccEEEeECCccC-----hhhhhhhccCCCCCEEEccCCc--cCccccch
Confidence 457777777766544321 256788999999884322 2224456788899999999884 543 33
Q ss_pred cCccccCccCEEEEcccCCccc-ccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454 268 PSSASFRNLTVLKVCNCWQLIS-LVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF 346 (410)
Q Consensus 268 ~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 346 (410)
..+..+++|++|+++++. +.. ++. .....+++|++|++++|.-...++... .++|+.|+++++ .++.+
T Consensus 368 ~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------~~~L~~L~Ls~N-~l~~i 436 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNS-VSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRCL--------PPRIKVLDLHSN-KIKSI 436 (520)
T ss_dssp HHHTTCTTCCEEECCSSC-CBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGGSC--------CTTCCEEECCSS-CCCCC
T ss_pred HHHhhCCCCCEEECCCCc-CCccccc-chhccCccCCEEECcCCCCCcchhhhh--------cccCCEEECCCC-ccccc
Confidence 456778889999998774 554 442 234667889999998875433343321 268999999996 57766
Q ss_pred cCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEecccc
Q 036454 347 CSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWELG 391 (410)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~~ 391 (410)
+... ..+++|++|++++| .++.+|.. +..+++|+++++++|.
T Consensus 437 p~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 437 PKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhh--hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 6543 36999999999987 67788876 6678999999998543
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=9.1e-23 Score=210.45 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=229.9
Q ss_pred cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccc-cCchhHHhhhh-------ccceEeeccccCcce
Q 036454 17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKN-IFPTSIARSLL-------RLETLSIKDCGSVEE 88 (410)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~l~-------~L~~L~l~~~~~l~~ 88 (410)
.+++|+.|+++++.....+ |..+..+++|++|++++|..+.. ..|..+ ++++ +|++|+++++. +..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i----P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~-L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNN-LEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC----CGGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSC-CCB
T ss_pred cCCCCCEEECcCCCCCccC----hHHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCc-CCc
Confidence 8999999999998644444 78889999999999999953554 224333 4565 99999999987 766
Q ss_pred EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------Ccccc-ccEEEeeccCc
Q 036454 89 IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFAN-LEELTLSKCIF 158 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~-L~~L~i~~~~~ 158 (410)
+|... .+..+++|+.|+++++ .+..++ .+ ..+++|+.|+++++ ..+++ |+.|++++|.+
T Consensus 563 ip~~~-------~l~~L~~L~~L~Ls~N-~l~~lp--~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 563 FPASA-------SLQKMVKLGLLDCVHN-KVRHLE--AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCCHH-------HHTTCTTCCEEECTTS-CCCBCC--CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred cCChh-------hhhcCCCCCEEECCCC-Ccccch--hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 65201 4678899999999998 555666 22 47899999999988 34567 99999999998
Q ss_pred ccccccc----cccccEEEEEeCCCccchh---hhhh--hcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454 159 TTWRQAQ----FHKLKILHFISDGSDFFQV---GLLQ--NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 159 ~~~~~~~----l~~L~~L~l~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (410)
..++... .++|+.|+++.+.+..... ..+. .+++|+.|++++|.+..+.. ..+..+++|+.|++++
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-----~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-----ELFATGSPISTIILSN 706 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-----HHHHTTCCCSEEECCS
T ss_pred CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-----HHHccCCCCCEEECCC
Confidence 8655433 3459999995554433211 1122 34589999999998876543 2234689999999998
Q ss_pred cccccccccCCCCcc----ccccccceEEEEecccccccccccCcc--ccCccCEEEEcccCCcccccchhhhhcCCCcc
Q 036454 230 LWLIEEHLWNPDSKL----DSFLQNLEFLEVKKCALSLISLVPSSA--SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLR 303 (410)
Q Consensus 230 c~~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 303 (410)
+ .+ ..+....... ...+++|++|++++| .++.+|..+. .+++|+.|+++++ .+..++ .....+++|+
T Consensus 707 N-~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~ 779 (876)
T 4ecn_A 707 N-LM-TSIPENSLKPKDGNYKNTYLLTTIDLRFN--KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP--TQPLNSSQLK 779 (876)
T ss_dssp C-CC-SCCCTTSSSCTTSCCTTGGGCCEEECCSS--CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCTTCC
T ss_pred C-cC-CccChHHhccccccccccCCccEEECCCC--CCccchHHhhhccCCCcCEEEeCCC-CCCccc--hhhhcCCCCC
Confidence 4 23 2221111110 123459999999999 5778887776 8999999999887 466665 3557899999
Q ss_pred EEEecc------CcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454 304 ELRVSE------CNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN 370 (410)
Q Consensus 304 ~L~l~~------c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 370 (410)
.|++++ |.-...++..+.. +++|+.|++++|. +..++... .++|+.|++++|+...
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~------L~~L~~L~Ls~N~-L~~Ip~~l----~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITT------CPSLIQLQIGSND-IRKVDEKL----TPQLYILDIADNPNIS 841 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGG------CSSCCEEECCSSC-CCBCCSCC----CSSSCEEECCSCTTCE
T ss_pred EEECCCCCCcccccccccChHHHhc------CCCCCEEECCCCC-CCccCHhh----cCCCCEEECCCCCCCc
Confidence 999987 3334566767777 9999999999975 57777653 5899999999997654
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=203.32 Aligned_cols=296 Identities=18% Similarity=0.185 Sum_probs=175.4
Q ss_pred cccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCC
Q 036454 17 AATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGR 95 (410)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 95 (410)
.+++++.+++.++ .+..+ |.. +..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.
T Consensus 49 ~l~~l~~l~l~~~-~l~~l----p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~---- 116 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP---- 116 (597)
T ss_dssp GGCCCSEEEESSC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT----
T ss_pred cCCCceEEEeeCC-CCCCc----CHHHHccCCCCcEEECCCC-CCCCCChHHh-cCCCCCCEEECCCCc-CCCCCH----
Confidence 3567777777776 33333 333 456778888888777 4555655444 577888888887775 655554
Q ss_pred CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc
Q 036454 96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ 165 (410)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~ 165 (410)
..+..+++|+.|+++++ .+..++...+. .+++|++|+++++ ..+++|+.|++++|.+.......
T Consensus 117 ----~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 190 (597)
T 3oja_B 117 ----HVFQNVPLLTVLVLERN-DLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190 (597)
T ss_dssp ----TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGG
T ss_pred ----HHHcCCCCCCEEEeeCC-CCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhh
Confidence 13466778888888877 56666554433 5677777777666 33456666777666666554444
Q ss_pred cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD 245 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 245 (410)
+++|+.|++.......++ ..++|+.|++++|.+..+.. ...++|+.|+++++ .+. +...+
T Consensus 191 l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~L~~n-----~l~--~~~~l 250 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRG--------PVNVELTILKLQHN-----NLT--DTAWL 250 (597)
T ss_dssp CTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEEC--------SCCSCCCEEECCSS-----CCC--CCGGG
T ss_pred hhhhhhhhcccCcccccc-----CCchhheeeccCCccccccc--------ccCCCCCEEECCCC-----CCC--CChhh
Confidence 666666666444433322 23466666666666554433 12356777777663 221 12345
Q ss_pred cccccceEEEEecccccccc-cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454 246 SFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD 324 (410)
Q Consensus 246 ~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 324 (410)
..+++|++|++++|. +.. .+..++.+++|++|+++++ .+..++. ....+++|++|++++| .+..++..++.
T Consensus 251 ~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-- 322 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQPQ-- 322 (597)
T ss_dssp GGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGHHH--
T ss_pred ccCCCCCEEECCCCc--cCCCCHHHhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCccccc--
Confidence 666677777777763 333 3444556667777777665 3555432 2345667777777664 34455554444
Q ss_pred ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454 325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
+++|+.|+++++. +..++.. .+++|++|++++++
T Consensus 323 ----l~~L~~L~L~~N~-l~~~~~~----~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 323 ----FDRLENLYLDHNS-IVTLKLS----THHTLKNLTLSHND 356 (597)
T ss_dssp ----HTTCSEEECCSSC-CCCCCCC----TTCCCSEEECCSSC
T ss_pred ----CCCCCEEECCCCC-CCCcChh----hcCCCCEEEeeCCC
Confidence 6677777777643 4444432 36677777766654
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.2e-22 Score=194.35 Aligned_cols=340 Identities=16% Similarity=0.119 Sum_probs=238.5
Q ss_pred cccccccCccc---cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceE
Q 036454 2 IFDLQEVNSEE---THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETL 78 (410)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 78 (410)
.++++...... ..++.+++|++|+++++.....+ .+..+..+++|++|++++| .+....+..+ +++++|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L 108 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLEVL 108 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCCEE
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCC-ccCccChhhc-cCcccCCEE
Confidence 46667665543 35788999999999998532222 1455778999999999999 4555655444 689999999
Q ss_pred eeccccCcce-EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------Ccc--
Q 036454 79 SIKDCGSVEE-IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVF-- 145 (410)
Q Consensus 79 ~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l-- 145 (410)
+++++. +.. .+.. ..+..+++|+.|+++++ .+........-..+++|++|+++++ ..+
T Consensus 109 ~L~~n~-l~~~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 109 TLTQCN-LDGAVLSG-------NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp ECTTSC-CBTHHHHS-------STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred eCCCCC-CCccccCc-------ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 999987 553 2321 13677899999999998 4555543322237899999999988 111
Q ss_pred ccccEEEeeccCcccccccc-----------cccccEEEEEeCCCccchhhhhhhc---ccCceEEEeccccccccc---
Q 036454 146 ANLEELTLSKCIFTTWRQAQ-----------FHKLKILHFISDGSDFFQVGLLQNI---HNLEKLVLSTCEYKKIFS--- 208 (410)
Q Consensus 146 ~~L~~L~i~~~~~~~~~~~~-----------l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~--- 208 (410)
++|+.+++++|......+.. +++|+.|+++...........+... ++|+.|+++++.......
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 57889999998877655432 4789999996555554433444333 899999998874221100
Q ss_pred --cchhhcccc--ccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEEcc
Q 036454 209 --CEEVEEHAE--GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCN 283 (410)
Q Consensus 209 --~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~ 283 (410)
.......+. ..++|+.|+++++... .. ....+..+++|++|++++| .+..+ +..+..+++|++|++++
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~----~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-AL----LKSVFSHFTDLEQLTLAQN--EINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCC-EE----CTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCS
T ss_pred hhccCcccccccccccCceEEEecCcccc-cc----chhhcccCCCCCEEECCCC--cccccChhHhcCcccCCEEECCC
Confidence 000001111 2378999999995433 22 2455788999999999999 45555 44677899999999988
Q ss_pred cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEE
Q 036454 284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIV 363 (410)
Q Consensus 284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l 363 (410)
+ .+..+.. .....+++|++|++++|.-....+..+.. +++|++|+++++ .++.++.. .+..+++|++|++
T Consensus 333 N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l 402 (455)
T 3v47_A 333 N-FLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLG------LPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWL 402 (455)
T ss_dssp S-CCCEECG-GGGTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEEC
T ss_pred C-ccCCcCh-hHhcCcccCCEEECCCCcccccChhhccc------cccccEEECCCC-ccccCCHh-HhccCCcccEEEc
Confidence 7 4666643 45678999999999997443334566677 999999999995 67777654 3457999999999
Q ss_pred ecCCCCccc
Q 036454 364 ENCPKLNTF 372 (410)
Q Consensus 364 ~~c~~l~~~ 372 (410)
++++--...
T Consensus 403 ~~N~l~~~~ 411 (455)
T 3v47_A 403 HTNPWDCSC 411 (455)
T ss_dssp CSSCBCCCT
T ss_pred cCCCcccCC
Confidence 988654433
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6.2e-22 Score=191.85 Aligned_cols=295 Identities=18% Similarity=0.141 Sum_probs=188.6
Q ss_pred ccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEec
Q 036454 12 ETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVA 91 (410)
Q Consensus 12 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 91 (410)
...++.+++|++|+++++ .++.+ | ++..+++|++|++++| .+..++ . +++++|++|+++++. +..+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~----~-~l~~l~~L~~L~Ls~n-~l~~~~-~---~~l~~L~~L~Ls~N~-l~~~-- 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDM----T-GIEKLTGLTKLICTSN-NITTLD-L---SQNTNLTYLACDSNK-LTNL-- 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCC----T-TGGGCTTCSEEECCSS-CCSCCC-C---TTCTTCSEEECCSSC-CSCC--
T ss_pred ccChhHcCCCCEEEccCC-CcccC----h-hhcccCCCCEEEccCC-cCCeEc-c---ccCCCCCEEECcCCC-Ccee--
Confidence 456888999999999998 44432 4 5779999999999999 566663 3 689999999999986 6554
Q ss_pred cCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCccccccc
Q 036454 92 NDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQA 164 (410)
Q Consensus 92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~ 164 (410)
.+..+++|++|+++++ .+..++ + ..+++|++|+++++ ..+++|++|++++|......+.
T Consensus 101 ---------~~~~l~~L~~L~L~~N-~l~~l~---~-~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~ 166 (457)
T 3bz5_A 101 ---------DVTPLTKLTYLNCDTN-KLTKLD---V-SQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV 166 (457)
T ss_dssp ---------CCTTCTTCCEEECCSS-CCSCCC---C-TTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCC
T ss_pred ---------ecCCCCcCCEEECCCC-cCCeec---C-CCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccccc
Confidence 3457899999999998 566553 2 36788888888877 4456778888887744333222
Q ss_pred c-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454 165 Q-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK 243 (410)
Q Consensus 165 ~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 243 (410)
. +++|+.|+++...+..++ +..+++|+.|++++|.+..+ + +..+++|+.|+++++ .+.. ..
T Consensus 167 ~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~-------l~~l~~L~~L~Ls~N-----~l~~--ip 228 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D-------LNQNIQLTFLDCSSN-----KLTE--ID 228 (457)
T ss_dssp TTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C-------CTTCTTCSEEECCSS-----CCSC--CC
T ss_pred ccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c-------cccCCCCCEEECcCC-----cccc--cC
Confidence 2 777888888666665555 56777888888887776654 2 456678888888773 3321 11
Q ss_pred cccccccceEEEEecccccccccccCccccCccCEEEEc----------ccCCcccccchhhhhcCCCccEEEeccCccc
Q 036454 244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVC----------NCWQLISLVTPQTAKTLVQLRELRVSECNRL 313 (410)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~----------~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 313 (410)
+..+++|+.|++++| .++.++ .+.+++|+.|+++ +|..+..++ ...+++|+.|++++|..+
T Consensus 229 -~~~l~~L~~L~l~~N--~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVN--PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp -CTTCTTCSEEECCSS--CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTC
T ss_pred -ccccCCCCEEEeeCC--cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCccc
Confidence 566778888888887 455444 3445555555443 332222222 145677777777777665
Q ss_pred chhccccCCC--CccccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454 314 EEIVANDGDA--DDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC 366 (410)
Q Consensus 314 ~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 366 (410)
..++.....- -+....++|+.|+++++ .++.++ ...+++|+.|+++++
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred ceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC
Confidence 5554321110 00111345555555542 344432 234677777776654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.2e-22 Score=199.96 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=215.7
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
++.+++|+.|+++++. ++.+. +..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..+|.
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~--- 140 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEID---TYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR--- 140 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT---
T ss_pred HccCCCCcEEECCCCC-CCCCC---hHHhcCCCCCCEEECCCC-cCCCCCHHHH-cCCCCCCEEEeeCCC-CCCCCH---
Confidence 5678999999999984 44331 456789999999999999 5776766543 789999999999986 877775
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCcccccccccc
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQAQFH 167 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~~l~ 167 (410)
..+..+++|+.|+++++ .+..++...+. .+++|++|+++++ ..+++|+.|++++|.+..+.. ..
T Consensus 141 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~--~~ 211 (597)
T 3oja_B 141 -----GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI--PI 211 (597)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCBCCTTTTT-TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC--CT
T ss_pred -----HHhccCCCCCEEEeeCC-cCCCCChhhhh-cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC--Cc
Confidence 13477899999999998 66666655443 7899999999988 557899999999988765432 57
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+|+.|+++...+..++... .++|+.|++++|.+.... .+..+++|+.|+++++... ...+..+..
T Consensus 212 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~-------~l~~l~~L~~L~Ls~N~l~-----~~~~~~~~~ 276 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELE-----KIMYHPFVK 276 (597)
T ss_dssp TCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCC-----EEESGGGTT
T ss_pred hhheeeccCCccccccccc---CCCCCEEECCCCCCCCCh-------hhccCCCCCEEECCCCccC-----CCCHHHhcC
Confidence 8999999766666655322 378999999999877653 3677899999999985332 122456778
Q ss_pred cccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccc
Q 036454 248 LQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEI 327 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 327 (410)
+++|++|++++| .++.++.....+++|++|++++| .+..++ .....+++|+.|++++|. +..++ ...
T Consensus 277 l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~--~~~----- 343 (597)
T 3oja_B 277 MQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLK--LST----- 343 (597)
T ss_dssp CSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCC--CCT-----
T ss_pred ccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcC--hhh-----
Confidence 899999999999 67778777788999999999887 466665 345788999999999874 44442 445
Q ss_pred cccccceeecCcCc
Q 036454 328 VFSKLKWLFLESSE 341 (410)
Q Consensus 328 ~~~~L~~L~l~~c~ 341 (410)
+++|+.|++++++
T Consensus 344 -~~~L~~L~l~~N~ 356 (597)
T 3oja_B 344 -HHTLKNLTLSHND 356 (597)
T ss_dssp -TCCCSEEECCSSC
T ss_pred -cCCCCEEEeeCCC
Confidence 8999999999865
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1e-20 Score=188.73 Aligned_cols=338 Identities=14% Similarity=0.067 Sum_probs=218.3
Q ss_pred ccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCC
Q 036454 16 GAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGR 95 (410)
Q Consensus 16 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 95 (410)
..+...+.++++++ +++.+ |..+ .++|++|++++| .+..+++..+ .++++|++|+++++. +..++.
T Consensus 28 ~~~~~~~~l~ls~~-~L~~i----p~~~--~~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~---- 93 (562)
T 3a79_B 28 FSNELESMVDYSNR-NLTHV----PKDL--PPRTKALSLSQN-SISELRMPDI-SFLSELRVLRLSHNR-IRSLDF---- 93 (562)
T ss_dssp -----CCEEECTTS-CCCSC----CTTS--CTTCCEEECCSS-CCCCCCGGGT-TTCTTCCEEECCSCC-CCEECT----
T ss_pred cccCCCcEEEcCCC-CCccC----CCCC--CCCcCEEECCCC-CccccChhhh-ccCCCccEEECCCCC-CCcCCH----
Confidence 33555688999987 55544 6554 389999999999 5677766554 699999999999996 877754
Q ss_pred CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCccccccc
Q 036454 96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQA 164 (410)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~ 164 (410)
..+..+++|++|+++++ .++.++.. .+++|++|+++++ ..+++|++|++++|.+......
T Consensus 94 ----~~~~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (562)
T 3a79_B 94 ----HVFLFNQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164 (562)
T ss_dssp ----TTTTTCTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG
T ss_pred ----HHhCCCCCCCEEECCCC-cCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh
Confidence 15678899999999998 57777665 6799999999888 3457899999999887654333
Q ss_pred ccccc--cEEEEEeCCC--ccchhh--------------------------hhhhcccCceEEEeccc------------
Q 036454 165 QFHKL--KILHFISDGS--DFFQVG--------------------------LLQNIHNLEKLVLSTCE------------ 202 (410)
Q Consensus 165 ~l~~L--~~L~l~~~~~--~~~~~~--------------------------~l~~l~~L~~L~l~~~~------------ 202 (410)
.+++| +.|++..... ...... .+.++++|+.|+++++.
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 35666 8898854433 111111 12234555566555542
Q ss_pred ----------------cccccccchhhccccccCcccEEEeCCcccccccccCCC-------------------------
Q 036454 203 ----------------YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD------------------------- 241 (410)
Q Consensus 203 ----------------~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~------------------------- 241 (410)
+...... ........++|++|+++++.-. ..+....
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSV--KLFQFFWPRPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHH--HHHHHHTTSSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HhccCcceEEEecCCcCcHHHHH--HHHHhhhcccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecCh
Confidence 1000000 0000011236666666654321 1111000
Q ss_pred ------------------------CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccc-hhhh
Q 036454 242 ------------------------SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVT-PQTA 296 (410)
Q Consensus 242 ------------------------~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~ 296 (410)
......+++|++|++++|. .....+..+..+++|++|+++++ .++.++. ....
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 399 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMT 399 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT
T ss_pred hhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhh
Confidence 0001567888888888884 33335666778889999999876 4665532 1235
Q ss_pred hcCCCccEEEeccCcccchhccc-cCCCCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCC
Q 036454 297 KTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSA 374 (410)
Q Consensus 297 ~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~ 374 (410)
..+++|++|+++++.-...++.. +.. +++|+.|+++++. ++..... .+ ++|++|++++| .++.+|.
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAW------AESILVLNLSSNM-LTGSVFR----CLPPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCC------CTTCCEEECCSSC-CCGGGGS----SCCTTCSEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcC------cccCCEEECCCCC-CCcchhh----hhcCcCCEEECCCC-cCcccCh
Confidence 77889999999986443325443 344 7899999999865 4332222 24 69999999988 7788998
Q ss_pred CCCCCCCcceeEecccchh
Q 036454 375 GVLKTPRLQAVQNWELGED 393 (410)
Q Consensus 375 ~~~~~~~L~~l~~~~~~~~ 393 (410)
....+++|++|++++|.-.
T Consensus 468 ~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TTTSSCCCSEEECCSSCCC
T ss_pred hhcCCCCCCEEECCCCCCC
Confidence 8888999999999865433
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1e-20 Score=191.18 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=105.8
Q ss_pred ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454 218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK 297 (410)
Q Consensus 218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 297 (410)
.+++|+.+++..+... .. .....+..+++++.++++.|. .....+.....+++|+.|+++++.....+.+ ....
T Consensus 418 ~l~~L~~l~l~~~~~~-~~---~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~ 491 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLK-QM---SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFT 491 (635)
T ss_dssp TCTTCCEEECTTSEEE-ST---TSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCT
T ss_pred ccccccchhhhhcccc-cc---ccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCc-hhhh
Confidence 4456666666554332 11 122345667788888888874 3333344456788899999988754444322 3457
Q ss_pred cCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC
Q 036454 298 TLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV 376 (410)
Q Consensus 298 ~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 376 (410)
.+++|++|++++| .++.+ +..++. +++|+.|+|+++ +++.+... .+..+++|++|+++++.--...|..+
T Consensus 492 ~l~~L~~L~Ls~N-~L~~l~~~~f~~------l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 492 ELRNLTFLDLSQC-QLEQLSPTAFNS------LSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTT------CTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred hccccCEEECCCC-ccCCcChHHHcC------CCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 7899999999997 44444 555666 899999999995 57777654 34578999999998874433345555
Q ss_pred CCC-CCcceeEecc
Q 036454 377 LKT-PRLQAVQNWE 389 (410)
Q Consensus 377 ~~~-~~L~~l~~~~ 389 (410)
..+ ++|++|++++
T Consensus 563 ~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQ 576 (635)
T ss_dssp TCCCTTCCEEECTT
T ss_pred HhhhCcCCEEEeeC
Confidence 555 6899999984
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=4e-20 Score=178.97 Aligned_cols=251 Identities=18% Similarity=0.142 Sum_probs=114.3
Q ss_pred cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEeeccCcccccccccccccEEE
Q 036454 102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTLSKCIFTTWRQAQFHKLKILH 173 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~ 173 (410)
+..+++|++|+++++ .++.++. ..++|++|+++++ ..+++|+.|++++|.+..++.. .++|+.|+
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~-----~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~-~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL-PLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC-CTTCCEEE
T ss_pred cCCCCCCCEEECCCC-cCcccCC-----CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC-cCcccEEE
Confidence 344455555555554 3333222 1235555555544 2334555555555554443221 34556666
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+.......++ .+..+++|+.|++++|.+..+.. .+++|++|+++++.-. .+ ...+++|++
T Consensus 222 l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~--~l-------~~~~~~L~~ 281 (454)
T 1jl5_A 222 AGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLT--DL-------PELPQSLTF 281 (454)
T ss_dssp CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCS--CC-------CCCCTTCCE
T ss_pred CcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCccc--cc-------CcccCcCCE
Confidence 5444444444 24555666666666655544322 1255666666553211 11 112356666
Q ss_pred EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454 254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK 333 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~ 333 (410)
|++++| .++.++. ..++|++|+++++ .+..++ ...++|++|+++++ .++.++.. +++|+
T Consensus 282 L~ls~N--~l~~l~~---~~~~L~~L~l~~N-~l~~i~-----~~~~~L~~L~Ls~N-~l~~lp~~---------~~~L~ 340 (454)
T 1jl5_A 282 LDVSEN--IFSGLSE---LPPNLYYLNASSN-EIRSLC-----DLPPSLEELNVSNN-KLIELPAL---------PPRLE 340 (454)
T ss_dssp EECCSS--CCSEESC---CCTTCCEEECCSS-CCSEEC-----CCCTTCCEEECCSS-CCSCCCCC---------CTTCC
T ss_pred EECcCC--ccCcccC---cCCcCCEEECcCC-cCCccc-----CCcCcCCEEECCCC-cccccccc---------CCcCC
Confidence 666666 3443322 1255666666554 344332 12247777777764 34444331 57788
Q ss_pred eeecCcCcccceecCCCcccCCCCccEEEEecCCCCc--ccCCCCCCC-------------CCcceeEecccchhhcccc
Q 036454 334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN--TFSAGVLKT-------------PRLQAVQNWELGEDFWAGD 398 (410)
Q Consensus 334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~l~~~~~~~~~~~~~ 398 (410)
.|+++++ .++.++. .+++|++|++++++-.. .+|..+..+ ++|++++++++.-..+ +.
T Consensus 341 ~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~ 413 (454)
T 1jl5_A 341 RLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PD 413 (454)
T ss_dssp EEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred EEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-cc
Confidence 8888875 4555544 26788888887764433 455555444 6788888863322111 24
Q ss_pred hhhhhhhhe
Q 036454 399 VNTTLQHLK 407 (410)
Q Consensus 399 ~~~~~~~l~ 407 (410)
++.+++++.
T Consensus 414 iP~sl~~L~ 422 (454)
T 1jl5_A 414 IPESVEDLR 422 (454)
T ss_dssp ---------
T ss_pred chhhHhhee
Confidence 455555544
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.3e-20 Score=182.67 Aligned_cols=283 Identities=20% Similarity=0.127 Sum_probs=203.4
Q ss_pred cccccccCcccc-ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEee
Q 036454 2 IFDLQEVNSEET-HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSI 80 (410)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 80 (410)
.++++.....+. .++.+++|++|+++++. ++.+ + +..+++|++|++++| .+..++ . +++++|++|++
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~----~--~~~l~~L~~L~Ls~N-~l~~~~-~---~~l~~L~~L~L 113 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTL----D--LSQNTNLTYLACDSN-KLTNLD-V---TPLTKLTYLNC 113 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCC----C--CTTCTTCSEEECCSS-CCSCCC-C---TTCTTCCEEEC
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCc-CCeE----c--cccCCCCCEEECcCC-CCceee-c---CCCCcCCEEEC
Confidence 455666544332 47889999999999984 4433 3 668999999999999 566553 2 68999999999
Q ss_pred ccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEE
Q 036454 81 KDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELT 152 (410)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~ 152 (410)
+++. +..+ .+..+++|+.|+++++ .++.++ + ..+++|++|++.+| ..+++|+.|+
T Consensus 114 ~~N~-l~~l-----------~~~~l~~L~~L~l~~N-~l~~l~---l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 114 DTNK-LTKL-----------DVSQNPLLTYLNCARN-TLTEID---V-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp CSSC-CSCC-----------CCTTCTTCCEEECTTS-CCSCCC---C-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CCCc-CCee-----------cCCCCCcCCEEECCCC-ccceec---c-ccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 9986 6554 3467799999999998 555553 2 36899999999888 4568899999
Q ss_pred eeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454 153 LSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL 232 (410)
Q Consensus 153 i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 232 (410)
+++|.+..++...+++|+.|++....+...+ +..+++|+.|++++|.+..+ + +..+++|+.|+++++
T Consensus 177 ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~i-p-------~~~l~~L~~L~l~~N-- 243 (457)
T 3bz5_A 177 CSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI-D-------VTPLTQLTYFDCSVN-- 243 (457)
T ss_dssp CCSSCCCCCCCTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C-------CTTCTTCSEEECCSS--
T ss_pred CCCCccceeccccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCccccc-C-------ccccCCCCEEEeeCC--
Confidence 9999988876444899999999766666653 67889999999999988774 2 567899999999984
Q ss_pred ccccccCCCCccccccccce----------EEEEecccccccccccCccccCccCEEEEcccCCcccccch------hhh
Q 036454 233 IEEHLWNPDSKLDSFLQNLE----------FLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP------QTA 296 (410)
Q Consensus 233 l~~~~~~~~~~~~~~~~~L~----------~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~ 296 (410)
.+.... ...+++|+ .|++++|. ....++ .+.+++|++|++++|..+..++.. ..+
T Consensus 244 ---~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 244 ---PLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT-QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp ---CCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred ---cCCCcC---HHHCCCCCEEeccCCCCCEEECCCCc-cCCccc--ccccccCCEEECCCCcccceeccCCCcceEech
Confidence 332111 33445554 45555554 444443 356789999999998765555420 013
Q ss_pred hcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccce
Q 036454 297 KTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITS 345 (410)
Q Consensus 297 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 345 (410)
..+++|++|+++++ .++.+ .++. +++|+.|++++ +.+++
T Consensus 315 ~~~~~L~~L~L~~N-~l~~l--~l~~------l~~L~~L~l~~-N~l~~ 353 (457)
T 3bz5_A 315 SQNPKLVYLYLNNT-ELTEL--DVSH------NTKLKSLSCVN-AHIQD 353 (457)
T ss_dssp TTCTTCCEEECTTC-CCSCC--CCTT------CTTCSEEECCS-SCCCB
T ss_pred hhcccCCEEECCCC-ccccc--cccc------CCcCcEEECCC-CCCCC
Confidence 55677888888764 44444 3556 89999999987 34554
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.1e-20 Score=173.95 Aligned_cols=254 Identities=13% Similarity=0.127 Sum_probs=177.1
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
.+++.++++++ .++.+ |..+ .++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 33 c~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------- 95 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAV----PKEI--SPDTTLLDLQNN-DISELRKDDF-KGLQHLYALVLVNNK-ISKIHE------- 95 (332)
T ss_dssp EETTEEECCSS-CCSSC----CSCC--CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECG-------
T ss_pred ccCCEEECCCC-Ccccc----CCCC--CCCCeEEECCCC-cCCccCHhHh-hCCCCCcEEECCCCc-cCccCH-------
Confidence 37899998887 44444 5543 479999999988 5666655444 689999999999886 777643
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCccc--ccccc-
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTT--WRQAQ- 165 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~--~~~~~- 165 (410)
..+..+++|++|+++++ .+..++... .++|++|+++++ ..+++|+.|++++|.+.. ..+..
T Consensus 96 -~~~~~l~~L~~L~L~~n-~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 96 -KAFSPLRKLQKLYISKN-HLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp -GGSTTCTTCCEEECCSS-CCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred -hHhhCcCCCCEEECCCC-cCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 15677899999999987 566665543 389999999887 456889999999998854 32322
Q ss_pred -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454 166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL 244 (410)
Q Consensus 166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 244 (410)
..+|+.|++.......++... .++|+.|++++|.+..+.. ..+..+++|++|+++++ .+.......
T Consensus 170 ~~l~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~-----~~l~~l~~L~~L~L~~N-----~l~~~~~~~ 236 (332)
T 2ft3_A 170 DGLKLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIEL-----EDLLRYSKLYRLGLGHN-----QIRMIENGS 236 (332)
T ss_dssp CSCCCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCT-----TSSTTCTTCSCCBCCSS-----CCCCCCTTG
T ss_pred cCCccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCC-----cCCcCChhH
Confidence 128899999666666666432 2799999999998776643 13567788899988883 332223345
Q ss_pred ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh-----cCCCccEEEeccCc
Q 036454 245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK-----TLVQLRELRVSECN 311 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~l~~L~~L~l~~c~ 311 (410)
+..+++|++|++++| .++.+|..+..+++|++|+++++ .++.++...... ..++|+.|++.+++
T Consensus 237 ~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN--KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSS--CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhCCCCCCEEECCCC--cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 677888888888888 56677777777888888888765 365554311111 13455555555543
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3.5e-20 Score=179.42 Aligned_cols=303 Identities=17% Similarity=0.124 Sum_probs=146.0
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcc-------------cEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNL-------------VVVRIFDCQSLKNIFPTSIARSLLRLETLSIK 81 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 81 (410)
++++++|+.|+++++. +. ...|..++.+.+| ++|++++| .+..++.. .++|++|+++
T Consensus 30 i~~L~~L~~L~l~~n~-~~---~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~-----~~~L~~L~l~ 99 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSE-WE---RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL-----PPHLESLVAS 99 (454)
T ss_dssp ----CCHHHHHHHHHH-HH---HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC-----CTTCSEEECC
T ss_pred HhcccchhhhhccCCc-cc---ccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC-----cCCCCEEEcc
Confidence 6777777777777764 22 1225666666554 77777777 35544332 3567777776
Q ss_pred cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEe
Q 036454 82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTL 153 (410)
Q Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i 153 (410)
++. ++.+|. .+++|+.|+++++ .+..++. ..++|++|+++++ ..+++|++|++
T Consensus 100 ~n~-l~~lp~------------~~~~L~~L~l~~n-~l~~l~~-----~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l 160 (454)
T 1jl5_A 100 CNS-LTELPE------------LPQSLKSLLVDNN-NLKALSD-----LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160 (454)
T ss_dssp SSC-CSSCCC------------CCTTCCEEECCSS-CCSCCCS-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred CCc-CCcccc------------ccCCCcEEECCCC-ccCcccC-----CCCCCCEEECcCCCCCCCcccCCCCCCCEEEC
Confidence 664 554442 1134444444443 2222211 0134444444444 22334444444
Q ss_pred eccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccc---------------hhhccccc
Q 036454 154 SKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCE---------------EVEEHAEG 218 (410)
Q Consensus 154 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~~ 218 (410)
++|.+..++. ...+|+.|++.......++ .++++++|+.|++++|.+..+.... +. .+..
T Consensus 161 ~~N~l~~lp~-~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~ 235 (454)
T 1jl5_A 161 DNNSLKKLPD-LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP--ELQN 235 (454)
T ss_dssp CSSCCSCCCC-CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC--CCTT
T ss_pred CCCcCcccCC-CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc--ccCC
Confidence 4444433221 1334444444333333333 2344444444444444433321100 00 0334
Q ss_pred cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhc
Q 036454 219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKT 298 (410)
Q Consensus 219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 298 (410)
+++|++|+++++. + ..+ ...+++|++|++++| .++.++. .+++|++|+++++ .+..++ ..
T Consensus 236 l~~L~~L~l~~N~-l-~~l-------~~~~~~L~~L~l~~N--~l~~l~~---~~~~L~~L~ls~N-~l~~l~-----~~ 295 (454)
T 1jl5_A 236 LPFLTTIYADNNL-L-KTL-------PDLPPSLEALNVRDN--YLTDLPE---LPQSLTFLDVSEN-IFSGLS-----EL 295 (454)
T ss_dssp CTTCCEEECCSSC-C-SSC-------CSCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSS-CCSEES-----CC
T ss_pred CCCCCEEECCCCc-C-Ccc-------cccccccCEEECCCC--cccccCc---ccCcCCEEECcCC-ccCccc-----Cc
Confidence 4445555554421 1 011 112245555555554 2333332 1245555555444 233332 11
Q ss_pred CCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCC
Q 036454 299 LVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLK 378 (410)
Q Consensus 299 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 378 (410)
.++|+.|+++++ .++.++ . ..++|+.|+++++ .++.++. .+++|++|++++| .++.+|. .
T Consensus 296 ~~~L~~L~l~~N-~l~~i~----~-----~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~ 355 (454)
T 1jl5_A 296 PPNLYYLNASSN-EIRSLC----D-----LPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---L 355 (454)
T ss_dssp CTTCCEEECCSS-CCSEEC----C-----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---C
T ss_pred CCcCCEEECcCC-cCCccc----C-----CcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---h
Confidence 245666666554 222221 1 1358888888884 4665543 2689999999887 6677887 3
Q ss_pred CCCcceeEecccc
Q 036454 379 TPRLQAVQNWELG 391 (410)
Q Consensus 379 ~~~L~~l~~~~~~ 391 (410)
+++|+++++++|.
T Consensus 356 l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 356 PQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSC
T ss_pred hhhccEEECCCCC
Confidence 7899999998543
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=9.2e-20 Score=169.08 Aligned_cols=202 Identities=21% Similarity=0.255 Sum_probs=153.6
Q ss_pred cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC----
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD---- 241 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---- 241 (410)
+++|++|++....+..+| ..+.++++|+.|++++|.+..+.. .+..+++|++|++++|... ..+....
T Consensus 103 l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~------~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~ 174 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPA------SIASLNRLRELSIRACPEL-TELPEPLASTD 174 (328)
T ss_dssp GTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCCG------GGGGCTTCCEEEEEEETTC-CCCCSCSEEEC
T ss_pred CCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCcH------HHhcCcCCCEEECCCCCCc-cccChhHhhcc
Confidence 444444444333333333 235677788888888777665543 4566778888888776555 3331110
Q ss_pred -CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454 242 -SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND 320 (410)
Q Consensus 242 -~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 320 (410)
...+..+++|++|++++| .++.+|..++.+++|++|++++| .+..++. ....+++|++|++++|.....++..+
T Consensus 175 ~~~~~~~l~~L~~L~L~~n--~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWT--GIRSLPASIANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp -CCCEEESTTCCEEEEEEE--CCCCCCGGGGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred chhhhccCCCCCEEECcCC--CcCcchHhhcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHHHh
Confidence 012445899999999999 57788888889999999999887 4666653 46889999999999998888888888
Q ss_pred CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454 321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~ 388 (410)
+. +++|+.|++++|+.+..++.. +..+++|++|++++|+.+..+|..+..+++|+.+.+.
T Consensus 250 ~~------l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 250 GG------RAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TC------CCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred cC------CCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 88 999999999999888877754 3569999999999999999999999999999999986
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.1e-19 Score=166.98 Aligned_cols=278 Identities=14% Similarity=0.126 Sum_probs=199.9
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
..+++.+++.++ .++.+ |.. ..+++++|+++++ .+..+++..+ .++++|++|+++++. +..+..
T Consensus 30 ~c~l~~l~~~~~-~l~~l----p~~--~~~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------ 93 (330)
T 1xku_A 30 QCHLRVVQCSDL-GLEKV----PKD--LPPDTALLDLQNN-KITEIKDGDF-KNLKNLHTLILINNK-ISKISP------ 93 (330)
T ss_dssp EEETTEEECTTS-CCCSC----CCS--CCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSSC-CCCBCT------
T ss_pred cCCCeEEEecCC-Ccccc----Ccc--CCCCCeEEECCCC-cCCEeChhhh-ccCCCCCEEECCCCc-CCeeCH------
Confidence 347888888876 34433 443 2478999999988 5666655444 688999999999886 666532
Q ss_pred CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCccc--ccccc
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTT--WRQAQ 165 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~--~~~~~ 165 (410)
..+..+++|++|+++++ .++.++... .++|++|+++++ ..+++|+.|++++|.... ..+..
T Consensus 94 --~~~~~l~~L~~L~Ls~n-~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 94 --GAFAPLVKLERLYLSKN-QLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp --TTTTTCTTCCEEECCSS-CCSBCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred --HHhcCCCCCCEEECCCC-cCCccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 15677889999999987 566665543 378999999887 457889999999988754 22222
Q ss_pred ---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCC
Q 036454 166 ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDS 242 (410)
Q Consensus 166 ---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 242 (410)
+++|+.|++....+..++... .++|+.|++++|.+..+.. ..+..+++|++|+++++.-. . ...
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~--~---~~~ 233 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA-----ASLKGLNNLAKLGLSFNSIS--A---VDN 233 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECT-----GGGTTCTTCCEEECCSSCCC--E---ECT
T ss_pred ccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCCcCc--e---eCh
Confidence 889999999777776666433 3899999999998877643 24667899999999984322 1 123
Q ss_pred ccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhh-----hcCCCccEEEeccCcccc--h
Q 036454 243 KLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTA-----KTLVQLRELRVSECNRLE--E 315 (410)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L~~L~l~~c~~l~--~ 315 (410)
..+..+++|++|++++| .++.++..+..+++|++|+++++ .++.++..... ...+.|+.+++.+++-.. .
T Consensus 234 ~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 234 GSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp TTGGGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred hhccCCCCCCEEECCCC--cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccccc
Confidence 35778899999999999 67788888889999999999887 47666542211 235789999999865422 2
Q ss_pred hccccCCCCccccccccceeecCcC
Q 036454 316 IVANDGDADDEIVFSKLKWLFLESS 340 (410)
Q Consensus 316 ~~~~~~~~~~~~~~~~L~~L~l~~c 340 (410)
.+..+.. +++++.++++++
T Consensus 311 ~~~~f~~------~~~l~~l~L~~N 329 (330)
T 1xku_A 311 QPSTFRC------VYVRAAVQLGNY 329 (330)
T ss_dssp CGGGGTT------CCCGGGEEC---
T ss_pred Ccccccc------ccceeEEEeccc
Confidence 2344444 788889888764
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=5.4e-19 Score=164.19 Aligned_cols=291 Identities=15% Similarity=0.140 Sum_probs=199.4
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
+..+++.++++++ .+..+|.. -.+++++|+++++. +..++. ..+..+++|++|+++++ .+..+..
T Consensus 29 c~c~l~~l~~~~~-~l~~lp~~----~~~~l~~L~L~~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~ 93 (330)
T 1xku_A 29 CQCHLRVVQCSDL-GLEKVPKD----LPPDTALLDLQNNK-ITEIKD--------GDFKNLKNLHTLILINN-KISKISP 93 (330)
T ss_dssp CEEETTEEECTTS-CCCSCCCS----CCTTCCEEECCSSC-CCCBCT--------TTTTTCTTCCEEECCSS-CCCCBCT
T ss_pred CcCCCeEEEecCC-CccccCcc----CCCCCeEEECCCCc-CCEeCh--------hhhccCCCCCEEECCCC-cCCeeCH
Confidence 4558899999887 56666442 34789999999986 776664 25677899999999987 5555533
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
..+. .+ ++|++|++++|.+..++....++|+.|++....+...+...+.++++|+.|+++++.+.
T Consensus 94 ~~~~-~l--------------~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 94 GAFA-PL--------------VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TTTT-TC--------------TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred HHhc-CC--------------CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 3222 33 45555555555555444444678888888777777777777888999999999988765
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEEcc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCN 283 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~ 283 (410)
.... ....+..+++|++|+++++.-. .+ . ....++|++|++++| .++.+ +..+..+++|++|++++
T Consensus 159 ~~~~---~~~~~~~l~~L~~L~l~~n~l~--~l---~---~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 159 SSGI---ENGAFQGMKKLSYIRIADTNIT--TI---P---QGLPPSLTELHLDGN--KITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp GGGB---CTTGGGGCTTCCEEECCSSCCC--SC---C---SSCCTTCSEEECTTS--CCCEECTGGGTTCTTCCEEECCS
T ss_pred ccCc---ChhhccCCCCcCEEECCCCccc--cC---C---ccccccCCEEECCCC--cCCccCHHHhcCCCCCCEEECCC
Confidence 4211 1124567889999999884322 22 1 122378999999998 45554 44567788999999987
Q ss_pred cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcc-----cCCCCc
Q 036454 284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYA-----FSFPSL 358 (410)
Q Consensus 284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~L 358 (410)
+ .+..++. .....+++|++|++++| .++.++..+.. +++|+.|+++++ .++.++..... ...+.+
T Consensus 226 n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 226 N-SISAVDN-GSLANTPHLRELHLNNN-KLVKVPGGLAD------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp S-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTT------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred C-cCceeCh-hhccCCCCCCEEECCCC-cCccCChhhcc------CCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence 7 4665543 34577889999999986 56677777777 899999999985 47766544321 124788
Q ss_pred cEEEEecCCCCc--ccCCCCCCCCCcceeEec
Q 036454 359 EDLIVENCPKLN--TFSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 359 ~~L~l~~c~~l~--~~~~~~~~~~~L~~l~~~ 388 (410)
+.+++.+++... ..|..+..+++++.++++
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred cceEeecCcccccccCccccccccceeEEEec
Confidence 889998876532 234455567888888876
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.6e-19 Score=167.88 Aligned_cols=290 Identities=15% Similarity=0.133 Sum_probs=201.8
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
+..+++.++++++ .++.+|.. -.++|++|+++++. +..++. ..+..+++|++|+++++ .+..+..
T Consensus 31 c~c~l~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~ 95 (332)
T 2ft3_A 31 CHCHLRVVQCSDL-GLKAVPKE----ISPDTTLLDLQNND-ISELRK--------DDFKGLQHLYALVLVNN-KISKIHE 95 (332)
T ss_dssp CEEETTEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCCEECG
T ss_pred CcccCCEEECCCC-CccccCCC----CCCCCeEEECCCCc-CCccCH--------hHhhCCCCCcEEECCCC-ccCccCH
Confidence 4457999999888 56666542 24789999999986 777754 25678899999999988 5555533
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
..+. .+ ++|++|++++|.+..++....++|++|++....+...+...+.++++|+.|+++++.+.
T Consensus 96 ~~~~-~l--------------~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 96 KAFS-PL--------------RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGST-TC--------------TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred hHhh-Cc--------------CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 3322 34 45555555555555444444578888888777777777677788999999999998775
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-cCccccCccCEEEEcc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVCN 283 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~~ 283 (410)
.... ....+..+ +|++|+++++.-. .+ . ....++|++|++++| .++.++ ..+..+++|++|++++
T Consensus 161 ~~~~---~~~~~~~l-~L~~L~l~~n~l~--~l---~---~~~~~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 161 NSGF---EPGAFDGL-KLNYLRISEAKLT--GI---P---KDLPETLNELHLDHN--KIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp GGGS---CTTSSCSC-CCSCCBCCSSBCS--SC---C---SSSCSSCSCCBCCSS--CCCCCCTTSSTTCTTCSCCBCCS
T ss_pred cCCC---CcccccCC-ccCEEECcCCCCC--cc---C---ccccCCCCEEECCCC--cCCccCHHHhcCCCCCCEEECCC
Confidence 4211 11123444 8999999884322 22 1 122379999999998 455554 4567889999999987
Q ss_pred cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCccc-----CCCCc
Q 036454 284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAF-----SFPSL 358 (410)
Q Consensus 284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~~~L 358 (410)
+ .+..++. .....+++|++|++++| .++.++..+.. +++|+.|+++++ .++.++...... ..++|
T Consensus 227 N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l 296 (332)
T 2ft3_A 227 N-QIRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAGLPD------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYY 296 (332)
T ss_dssp S-CCCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTTGGG------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCB
T ss_pred C-cCCcCCh-hHhhCCCCCCEEECCCC-cCeecChhhhc------CccCCEEECCCC-CCCccChhHccccccccccccc
Confidence 7 4666543 34578899999999986 66677777777 899999999985 577766543221 25779
Q ss_pred cEEEEecCCCC--cccCCCCCCCCCcceeEec
Q 036454 359 EDLIVENCPKL--NTFSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 359 ~~L~l~~c~~l--~~~~~~~~~~~~L~~l~~~ 388 (410)
+.+++.+++.. ...|..+..+++|+.++++
T Consensus 297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred cceEeecCcccccccCcccccccchhhhhhcc
Confidence 99999998764 3344556678899999886
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4e-19 Score=164.77 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=43.7
Q ss_pred ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454 245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD 324 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 324 (410)
+..+++|++|++++|. ....++..++.+++|++|++++|..+..++ .....+++|++|++++|.....+|..++.
T Consensus 225 l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-- 299 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-- 299 (328)
T ss_dssp GGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCCCCGGGGG--
T ss_pred hccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhhccHHHhh--
Confidence 3444555555555544 444444444555555555555554444443 22355555555555555555555555555
Q ss_pred ccccccccceeecC
Q 036454 325 DEIVFSKLKWLFLE 338 (410)
Q Consensus 325 ~~~~~~~L~~L~l~ 338 (410)
+++|+.+.+.
T Consensus 300 ----L~~L~~l~l~ 309 (328)
T 4fcg_A 300 ----LPANCIILVP 309 (328)
T ss_dssp ----SCTTCEEECC
T ss_pred ----ccCceEEeCC
Confidence 5555555544
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.7e-18 Score=174.92 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=75.9
Q ss_pred cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccch-hccccCCCCccccccccceeecCcCcccceecCC
Q 036454 271 ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEE-IVANDGDADDEIVFSKLKWLFLESSESITSFCSG 349 (410)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 349 (410)
..+++++.++++.+ .+..... .....+++|++|+++++..... .+..+.. +++|+.|+++++ .++.+...
T Consensus 442 ~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------l~~L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp TTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTT------CTTCCEEECTTS-CCCEECTT
T ss_pred cccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCchhhhh------ccccCEEECCCC-ccCCcChH
Confidence 34455556665444 2333321 3446778899999988765544 3445555 899999999996 57777655
Q ss_pred CcccCCCCccEEEEecCCCCcccCC-CCCCCCCcceeEecccc
Q 036454 350 NYAFSFPSLEDLIVENCPKLNTFSA-GVLKTPRLQAVQNWELG 391 (410)
Q Consensus 350 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~~~~~~ 391 (410)
.+..+++|++|+++++ ++..++. .+..+++|++|++++|.
T Consensus 513 -~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 513 -AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp -TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred -HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 3557999999999887 5666654 45578999999998554
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=7.1e-21 Score=191.01 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=75.4
Q ss_pred cccccceEEEEecccccccc-cccCcc-ccCccCEEEEcc---cCCcccccc----hhhhhcCCCccEEEeccCcc-cch
Q 036454 246 SFLQNLEFLEVKKCALSLIS-LVPSSA-SFRNLTVLKVCN---CWQLISLVT----PQTAKTLVQLRELRVSECNR-LEE 315 (410)
Q Consensus 246 ~~~~~L~~L~l~~~~~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~-l~~ 315 (410)
..+++|++|++..+ .++. .+..++ .+++|++|++++ |..++..+. ......+++|++|+++.|.. +..
T Consensus 375 ~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 375 QGCQELEYMAVYVS--DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHCTTCSEEEEEES--CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred hhCccCeEEEeecC--CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 34566666666433 2322 111122 366677777763 445554321 12235577777777766543 211
Q ss_pred -hccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc--cCCCCCCCCCcceeEecccc
Q 036454 316 -IVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT--FSAGVLKTPRLQAVQNWELG 391 (410)
Q Consensus 316 -~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~l~~~~~~ 391 (410)
.+..++ ..+++|+.|++++|. +++.........+++|++|++++|+ +.. ++.....+++|++|+++++.
T Consensus 453 ~~~~~~~-----~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 453 LGLSYIG-----QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHH-----HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHH-----HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 111111 126778888888764 5443222233468999999999997 432 33333357889999998554
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=5e-21 Score=192.15 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=67.4
Q ss_pred ccccceEEEEeccccccccc-ccCc-cccCccCEEEEc-----ccCCcccccch----hhhhcCCCccEEEeccCcccch
Q 036454 247 FLQNLEFLEVKKCALSLISL-VPSS-ASFRNLTVLKVC-----NCWQLISLVTP----QTAKTLVQLRELRVSECNRLEE 315 (410)
Q Consensus 247 ~~~~L~~L~l~~~~~~l~~l-~~~~-~~~~~L~~L~l~-----~c~~l~~~~~~----~~~~~l~~L~~L~l~~c~~l~~ 315 (410)
.+++|++|.+..+ .++.. ...+ ..+++|++|+++ +|.+++..+.. .....+++|++|++++ .+.+
T Consensus 370 ~~~~L~~L~~~~~--~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~ 445 (594)
T 2p1m_B 370 GCPKLESVLYFCR--QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD 445 (594)
T ss_dssp HCTTCCEEEEEES--CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH
T ss_pred hchhHHHHHHhcC--CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH
Confidence 3566666654443 33221 1111 246677777776 45555533221 1235566777777754 2222
Q ss_pred h-ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc-cCCCCCCCCCcceeEecccc
Q 036454 316 I-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT-FSAGVLKTPRLQAVQNWELG 391 (410)
Q Consensus 316 ~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~l~~~~~~ 391 (410)
. +..++. .+++|+.|++++|. +++.........+++|++|++++|+.-.. +......+++|++|+++++.
T Consensus 446 ~~~~~l~~-----~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 446 KVFEYIGT-----YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHH-----HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHH-----hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 1 111110 15667777777654 43332222223477777777777765211 11222346777777777543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=3.6e-21 Score=187.17 Aligned_cols=362 Identities=16% Similarity=0.104 Sum_probs=225.4
Q ss_pred cccccccCcccc----ccccccCCcEEEecCccccc-cccccCCccccccCcccEEEeccCcCccccCchhHHhhhh---
Q 036454 2 IFDLQEVNSEET----HSGAATQLRELHVFHLPKLT-KLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLL--- 73 (410)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~--- 73 (410)
.+|++.....+. .+..+++|++|++++|. ++ ..+...+..+..+++|++|+++++ .+.+..+..++..++
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTT
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCC
Confidence 356666654432 26678999999999985 43 111122444567799999999988 455544444555666
Q ss_pred -ccceEeeccccCcce-----EeccCCCCCCCcccccCCCccEEeeccCCCccccccC----cccCCCCCceEEEEccC-
Q 036454 74 -RLETLSIKDCGSVEE-----IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG----MHILECPELRKLEVNHV- 142 (410)
Q Consensus 74 -~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~L~~L~l~~~- 142 (410)
+|++|++++|. +.. ++. .+..+++|++|+++++. +.+.... ......++|++|++++|
T Consensus 85 ~~L~~L~L~~n~-i~~~~~~~l~~---------~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 85 CKIQKLSLQNCC-LTGAGCGVLSS---------TLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHH---------HTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CceeEEEccCCC-CCHHHHHHHHH---------HHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 69999999986 552 233 56678999999999984 4432111 11123568999999988
Q ss_pred -------------CccccccEEEeeccCcccccccc--------cccccEEEEEeCCCccch----hhhhhhcccCceEE
Q 036454 143 -------------DVFANLEELTLSKCIFTTWRQAQ--------FHKLKILHFISDGSDFFQ----VGLLQNIHNLEKLV 197 (410)
Q Consensus 143 -------------~~l~~L~~L~i~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~ 197 (410)
..+++|++|++++|.+....... .++|+.|++....+.... ...+..+++|+.|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 23478999999998875433222 348999999555555432 24467789999999
Q ss_pred EeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-----ccCc-c
Q 036454 198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-----VPSS-A 271 (410)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-----~~~~-~ 271 (410)
+++|.+.......+.......+++|++|++++|.-. ..-...-...+..+++|++|++++|. +.+. ...+ .
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNE--LGDEGARLLCETLLE 310 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHHHHHHHHHHHHCTTCCEEECTTCC--CHHHHHHHHHHHHTS
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC-HHHHHHHHHHHhhCCCcceEECCCCC--CchHHHHHHHHHhcc
Confidence 999876543211111222335789999999986332 11000002235568999999999984 3321 1111 1
Q ss_pred ccCccCEEEEcccCCcccccc---hhhhhcCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccce--
Q 036454 272 SFRNLTVLKVCNCWQLISLVT---PQTAKTLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITS-- 345 (410)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-- 345 (410)
..++|++|++++|. +..... ......+++|++|++++| .+.+. +..+... .....++|++|++++|. +++
T Consensus 311 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~-l~~~~~~L~~L~L~~n~-i~~~~ 386 (461)
T 1z7x_W 311 PGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG-LGQPGSVLRVLWLADCD-VSDSS 386 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH-HTSTTCCCCEEECTTSC-CCHHH
T ss_pred CCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHH-HcCCCCceEEEECCCCC-CChhh
Confidence 23689999999884 544321 134567799999999987 34332 1111100 00015689999999974 553
Q ss_pred ---ecCCCcccCCCCccEEEEecCCCCcc--------cCCCCCCCCCcceeEec
Q 036454 346 ---FCSGNYAFSFPSLEDLIVENCPKLNT--------FSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 346 ---~~~~~~~~~~~~L~~L~l~~c~~l~~--------~~~~~~~~~~L~~l~~~ 388 (410)
++. ....+++|++|++++|+--.. +|. ...+|+.+++.
T Consensus 387 ~~~l~~--~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~---~~~~L~~L~~~ 435 (461)
T 1z7x_W 387 CSSLAA--TLLANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLY 435 (461)
T ss_dssp HHHHHH--HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS---TTCCCCEEECT
T ss_pred HHHHHH--HHHhCCCccEEECCCCCCCHHHHHHHHHHhcc---CCcchhheeec
Confidence 222 223589999999998843211 222 23467777775
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=165.22 Aligned_cols=264 Identities=17% Similarity=0.159 Sum_probs=143.8
Q ss_pred CccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce
Q 036454 9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE 88 (410)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 88 (410)
...+.+.+..++|++|+++++ .++.+. +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..
T Consensus 42 ~l~~iP~~~~~~L~~L~l~~n-~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~ 114 (353)
T 2z80_A 42 SLNSIPSGLTEAVKSLDLSNN-RITYIS---NSDLQRCVNLQALVLTSN-GINTIEEDSF-SSLGSLEHLDLSYNY-LSN 114 (353)
T ss_dssp TCSSCCTTCCTTCCEEECTTS-CCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CSS
T ss_pred CcccccccccccCcEEECCCC-cCcccC---HHHhccCCCCCEEECCCC-ccCccCHhhc-CCCCCCCEEECCCCc-CCc
Confidence 333444444567788888776 344331 234567778888888777 5555544333 577778888887775 665
Q ss_pred EeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--
Q 036454 89 IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-- 165 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-- 165 (410)
++. ..+..+++|++|+++++ .+..++. ..+ ..+++|++|+++++ . ......+..
T Consensus 115 ~~~--------~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~~l~~L~~L~l~~n---~----------~~~~~~~~~~~ 171 (353)
T 2z80_A 115 LSS--------SWFKPLSSLTFLNLLGN-PYKTLGETSLF-SHLTKLQILRVGNM---D----------TFTKIQRKDFA 171 (353)
T ss_dssp CCH--------HHHTTCTTCSEEECTTC-CCSSSCSSCSC-TTCTTCCEEEEEES---S----------SCCEECTTTTT
T ss_pred CCH--------hHhCCCccCCEEECCCC-CCcccCchhhh-ccCCCCcEEECCCC---c----------cccccCHHHcc
Confidence 554 12556777888888776 4555444 222 24555555555444 0 122222211
Q ss_pred -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454 166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL 244 (410)
Q Consensus 166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 244 (410)
+++|+.|++............+..+++|+.|+++++.+..+.. .....+++|+.|+++++.-. .+.......
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~ 244 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-----IFVDVTSSVECLELRDTDLD--TFHFSELST 244 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-----HHHHHTTTEEEEEEESCBCT--TCCCC----
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh-----hhhhhcccccEEECCCCccc--ccccccccc
Confidence 5566666665555554444455666677777776666544322 11233566777777663221 110011111
Q ss_pred ccccccceEEEEeccc---ccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454 245 DSFLQNLEFLEVKKCA---LSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~---~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
....+.++.+++.++. ..+..++..+..+++|++|+++++ +++.++. .....+++|++|++++++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 2334556666666653 012234445566777888888766 4665543 223667788888887753
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3.9e-21 Score=186.91 Aligned_cols=347 Identities=18% Similarity=0.147 Sum_probs=223.8
Q ss_pred ccCCcEEEecCccccc-cccccCCccccccCcccEEEeccCcCccccCc---hhHHhhhhccceEeeccccCcceEeccC
Q 036454 18 ATQLRELHVFHLPKLT-KLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFP---TSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
.++|++|+++++. ++ ..| ...+..+++|++|++++|. +..... ......+++|++|+++++. +.......
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~---~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARW---AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC 75 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHH---HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH
T ss_pred Cccceehhhhhcc-cCchhH---HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH
Confidence 4678999998874 33 222 2224589999999999994 443211 1223567999999999986 54422100
Q ss_pred CCCCCCcccccCC----CccEEeeccCCCccccc----cCcccCCCCCceEEEEccC---------------CccccccE
Q 036454 94 GRGNDAATKFIFP----SLTFLRLRDLPDLTTFY----SGMHILECPELRKLEVNHV---------------DVFANLEE 150 (410)
Q Consensus 94 ~~~~~~~~~~~l~----~L~~L~l~~~~~l~~~~----~~~~~~~~~~L~~L~l~~~---------------~~l~~L~~ 150 (410)
....++ +|++|+++++ .+.+.. ...+ ..+++|++|+++++ ...++|++
T Consensus 76 -------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 146 (461)
T 1z7x_W 76 -------VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146 (461)
T ss_dssp -------HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred -------HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceE
Confidence 122233 7999999998 454311 2222 36899999999998 12347999
Q ss_pred EEeeccCcccccccc-------cccccEEEEEeCCCccchhhhhh-----hcccCceEEEeccccccccccchhhccccc
Q 036454 151 LTLSKCIFTTWRQAQ-------FHKLKILHFISDGSDFFQVGLLQ-----NIHNLEKLVLSTCEYKKIFSCEEVEEHAEG 218 (410)
Q Consensus 151 L~i~~~~~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 218 (410)
|++++|.+....... +++|+.|+++...+.......+. ..++|+.|++++|.+...... ..+..+..
T Consensus 147 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~ 225 (461)
T 1z7x_W 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIVAS 225 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHHHh
Confidence 999999876543211 68999999966556554433333 256999999999976653110 01113456
Q ss_pred cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-----cccCccccCccCEEEEcccCCcccccch
Q 036454 219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-----LVPSSASFRNLTVLKVCNCWQLISLVTP 293 (410)
Q Consensus 219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 293 (410)
+++|++|+++++.-.+.............+++|++|++++| .++. ++..+..+++|++|+++++ .+......
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 302 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC--GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGAR 302 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC--CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHH
Confidence 79999999998642200000000011235789999999999 4544 4555566899999999887 45443221
Q ss_pred hhh----hcCCCccEEEeccCcccch----hccccCCCCccccccccceeecCcCcccceecCCCcc----cCCCCccEE
Q 036454 294 QTA----KTLVQLRELRVSECNRLEE----IVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYA----FSFPSLEDL 361 (410)
Q Consensus 294 ~~~----~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L 361 (410)
... ...++|++|++++|.--.. ++..+.. +++|+.|+++++ .+++....... ...++|++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~------~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ------NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH------CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh------CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence 111 2336999999999853222 3333333 699999999997 46654322111 126799999
Q ss_pred EEecCCCCc-----ccCCCCCCCCCcceeEecccc
Q 036454 362 IVENCPKLN-----TFSAGVLKTPRLQAVQNWELG 391 (410)
Q Consensus 362 ~l~~c~~l~-----~~~~~~~~~~~L~~l~~~~~~ 391 (410)
++++| .+. .++..+...++|++++++++.
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99998 454 567666678999999998554
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=167.97 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=161.7
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
.+++|++|++++| .+..+++..+ .++++|++|+++++. +...+ .+..+++|++|+++++ .++.++.
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~----------~~~~l~~L~~L~Ls~n-~l~~l~~ 97 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV 97 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE----------EETTCTTCCEEECCSS-EEEEEEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHHh-hCCCcCCEEECCCCc-CCcch----------hhhhcCCCCEEECcCC-ccccccC
Confidence 4567777777777 4555544333 577777777777765 54443 2455677777777766 3333221
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
.++|+.|++++|.+.......+++|+.|+++...+...+...+..+++|+.|++++|.+.
T Consensus 98 --------------------~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 98 --------------------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp --------------------CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred --------------------CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 145555556655555555444667777777666666665556677888888888888776
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c 284 (410)
.+.. ......+++|++|+++++.-. .+ .....+++|++|++++| .++.+++.+..+++|++|+++++
T Consensus 158 ~~~~----~~~~~~l~~L~~L~L~~N~l~--~~-----~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 158 TVNF----AELAASSDTLEHLNLQYNFIY--DV-----KGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEEG----GGGGGGTTTCCEEECTTSCCC--EE-----ECCCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTS
T ss_pred cccH----HHHhhccCcCCEEECCCCcCc--cc-----ccccccccCCEEECCCC--cCCcchhhhcccCcccEEECcCC
Confidence 6533 111235688888888874322 11 12234788888888888 57777776778888888888776
Q ss_pred CCcccccchhhhhcCCCccEEEeccCccc-chhccccCCCCccccccccceeecCcCcccceecCC
Q 036454 285 WQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDGDADDEIVFSKLKWLFLESSESITSFCSG 349 (410)
Q Consensus 285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 349 (410)
.++.++. ....+++|+.|++++++-. ...+..++. +++|+.|++.+++.++.....
T Consensus 225 -~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~------~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 225 -KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -CCCEECT--TCCCCTTCCEEECTTCCCBHHHHHHHHHT------CHHHHHHHHHHHHHHHSSSSC
T ss_pred -cccchhh--HhhcCCCCCEEEccCCCccCcCHHHHHhc------cccceEEECCCchhccCCchh
Confidence 4666653 3567788888888886544 345555555 788888888877777665443
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.2e-19 Score=181.98 Aligned_cols=240 Identities=13% Similarity=0.037 Sum_probs=147.4
Q ss_pred CCCCceEEEEccC---------CccccccEEEeeccCcccccc----cccccccEEEEEeCCCccchhhhhhhcccCceE
Q 036454 130 ECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQ----AQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL 196 (410)
Q Consensus 130 ~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 196 (410)
.+++|+.+.+.++ ..+++|++|++++|.+..... ..+++|+.|++...............+++|+.|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 4567777777555 345688888888887433222 127888998886332222223334678889999
Q ss_pred EEec----------c-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc-cccccceEEEEec---ccc
Q 036454 197 VLST----------C-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD-SFLQNLEFLEVKK---CAL 261 (410)
Q Consensus 197 ~l~~----------~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~~~~L~~L~l~~---~~~ 261 (410)
++++ | .+..... .....++++|++|++ .|..+ ... ....+ ..+++|++|++.+ |.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l-~~~~l-~~~---~~~~l~~~~~~L~~L~l~~~~~~n- 417 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAV-YVSDI-TNE---SLESIGTYLKNLCDFRLVLLDREE- 417 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEE-EESCC-CHH---HHHHHHHHCCSCCEEEEEECSCCS-
T ss_pred EeecCccccccccccCccCHHHH----HHHHhhCccCeEEEe-ecCCc-cHH---HHHHHHhhCCCCcEEEEeecCCCc-
Confidence 9984 3 2222100 112345789999999 44433 211 12223 3489999999984 43
Q ss_pred cccccc------cCccccCccCEEEEcccCC-cccccchhhhhcCCCccEEEeccCcccch--hccccCCCCcccccccc
Q 036454 262 SLISLV------PSSASFRNLTVLKVCNCWQ-LISLVTPQTAKTLVQLRELRVSECNRLEE--IVANDGDADDEIVFSKL 332 (410)
Q Consensus 262 ~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~L 332 (410)
.++..| .....+++|++|++++|.+ +...........+++|++|++++|. +++ ++..... +++|
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~------~~~L 490 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG------CPNL 490 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTC------CTTC
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhc------Cccc
Confidence 454422 2245689999999988754 3333222334568999999999875 432 2333344 8999
Q ss_pred ceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC--CCCCCCCcceeEec
Q 036454 333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA--GVLKTPRLQAVQNW 388 (410)
Q Consensus 333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~~l~~~ 388 (410)
++|++++|+ +++.........+++|++|++++|. +..... -...+|.++...+.
T Consensus 491 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp CEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred CeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 999999998 6554333334468999999999996 443211 11245666666554
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=4.4e-20 Score=185.24 Aligned_cols=348 Identities=15% Similarity=0.097 Sum_probs=199.0
Q ss_pred ccccccCCcEEEecCccccccc------cccC-----CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecc
Q 036454 14 HSGAATQLRELHVFHLPKLTKL------WNKD-----PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKD 82 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~------~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 82 (410)
.+..|++|+.|++.+++.+... |.+. +.....+++|++|++++|. +.+..+..+...+++|++|++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCC
Confidence 3566888899988887644322 1000 0112367888888888884 54443444444688888888888
Q ss_pred ccCcce--EeccCCCCCCCcccccCCCccEEeeccCCCcccccc---CcccCCCCCceEEEEccCC-------------c
Q 036454 83 CGSVEE--IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS---GMHILECPELRKLEVNHVD-------------V 144 (410)
Q Consensus 83 ~~~l~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~-------------~ 144 (410)
|..+.. ++. ....+++|++|++++|. +.+... ......+++|++|++++|. .
T Consensus 140 ~~~~~~~~l~~---------~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 140 CEGFSTDGLAA---------IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp CEEEEHHHHHH---------HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHH---------HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 753433 221 33467888888888774 333211 1112356788888887662 2
Q ss_pred cccccEEEeeccCcccccccc---cccccEEEEE-e------------------------------CCCccchhhhhhhc
Q 036454 145 FANLEELTLSKCIFTTWRQAQ---FHKLKILHFI-S------------------------------DGSDFFQVGLLQNI 190 (410)
Q Consensus 145 l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~-~------------------------------~~~~~~~~~~l~~l 190 (410)
+++|+.|++++|......+.. +++|+.|++. + .....++ ..+..+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-AVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG-GGHHHH
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH-HHHHhh
Confidence 377888888777322211111 5666666641 1 1111111 223456
Q ss_pred ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc--------ccc
Q 036454 191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC--------ALS 262 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~ 262 (410)
++|+.|++++|.+.... .......+++|++|++++|..- ..+ ......+++|++|++.+| . .
T Consensus 289 ~~L~~L~L~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~~-~~l----~~l~~~~~~L~~L~L~~~~~~g~~~~~-~ 358 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYD----LVKLLCQCPKLQRLWVLDYIED-AGL----EVLASTCKDLRELRVFPSEPFVMEPNV-A 358 (594)
T ss_dssp TTCCEEECTTCCCCHHH----HHHHHTTCTTCCEEEEEGGGHH-HHH----HHHHHHCTTCCEEEEECSCTTCSSCSS-C
T ss_pred CCCCEEEccCCCCCHHH----HHHHHhcCCCcCEEeCcCccCH-HHH----HHHHHhCCCCCEEEEecCcccccccCC-C
Confidence 77888887777643211 1112345678888888776211 111 122345788888888443 2 2
Q ss_pred ccc--cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEec-----cCcccchhccc------cCCCCccccc
Q 036454 263 LIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVS-----ECNRLEEIVAN------DGDADDEIVF 329 (410)
Q Consensus 263 l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~~~~~------~~~~~~~~~~ 329 (410)
++. +......+++|++|.+ +|.+++..........+++|++|++. +|..++..+.. ... +
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~------~ 431 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH------C 431 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH------C
T ss_pred CCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh------C
Confidence 221 1111234788888855 56666654433344568899999998 56666633221 223 7
Q ss_pred cccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC-CCCCCcceeEecccch
Q 036454 330 SKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV-LKTPRLQAVQNWELGE 392 (410)
Q Consensus 330 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~~~~~~~ 392 (410)
++|+.|++++ .+++.........+++|++|++.+|.--......+ ..+++|++|+++++..
T Consensus 432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred CCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 8899999976 55554433333348999999999885311111111 3479999999986553
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.5e-18 Score=169.94 Aligned_cols=251 Identities=20% Similarity=0.099 Sum_probs=150.7
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
..+++.|+++++ .++.+ |..+. ++|++|++++| .++.++. .+++|++|+++++. ++.+|.
T Consensus 39 ~~~l~~L~ls~n-~L~~l----p~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~------ 98 (622)
T 3g06_A 39 NNGNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV------ 98 (622)
T ss_dssp HHCCCEEECCSS-CCSCC----CSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC------
T ss_pred CCCCcEEEecCC-CcCcc----ChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC------
Confidence 346888888887 45544 55432 78999999888 5666644 46889999998886 666553
Q ss_pred CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------CccccccEEEeeccCcccccccccccccE
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------DVFANLEELTLSKCIFTTWRQAQFHKLKI 171 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~ 171 (410)
.+++|++|+++++ .++.++. .+++|+.|+++++ ..+++|++|++++|.+..++. .+++|+.
T Consensus 99 ------~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~-~~~~L~~ 165 (622)
T 3g06_A 99 ------LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-LPSELCK 165 (622)
T ss_dssp ------CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCE
T ss_pred ------CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-ccCCCCE
Confidence 4588899998887 5555444 3467777777666 223566677776666554432 2556666
Q ss_pred EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454 172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL 251 (410)
Q Consensus 172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L 251 (410)
|++..+.+..++ ..+++|+.|++++|.+..+.. .+++|+.|+++++. + ..+ ...+++|
T Consensus 166 L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N~-l-~~l-------~~~~~~L 223 (622)
T 3g06_A 166 LWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT---------LPSELYKLWAYNNR-L-TSL-------PALPSGL 223 (622)
T ss_dssp EECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSC-C-SSC-------CCCCTTC
T ss_pred EECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC---------ccchhhEEECcCCc-c-ccc-------CCCCCCC
Confidence 666555555544 334666666666666554422 23566666666521 1 111 1224566
Q ss_pred eEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccc
Q 036454 252 EFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSK 331 (410)
Q Consensus 252 ~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 331 (410)
++|++++| .++.++ ..+++|++|+++++ +++.++. .+++|+.|++++| .++.++..+.. +++
T Consensus 224 ~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~------l~~ 285 (622)
T 3g06_A 224 KELIVSGN--RLTSLP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIH------LSS 285 (622)
T ss_dssp CEEECCSS--CCSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGG------SCT
T ss_pred CEEEccCC--ccCcCC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhh------ccc
Confidence 66666666 444444 34456666666555 4555542 4556666666654 44455555555 666
Q ss_pred cceeecCcCc
Q 036454 332 LKWLFLESSE 341 (410)
Q Consensus 332 L~~L~l~~c~ 341 (410)
|+.|++++++
T Consensus 286 L~~L~L~~N~ 295 (622)
T 3g06_A 286 ETTVNLEGNP 295 (622)
T ss_dssp TCEEECCSCC
T ss_pred cCEEEecCCC
Confidence 6666666643
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=5e-19 Score=163.07 Aligned_cols=251 Identities=17% Similarity=0.071 Sum_probs=153.8
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc-eEeccCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGN 97 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~ 97 (410)
.+++.|+++++. ++.. ...|..+..+++|++|+++++..+....|..+ +++++|++|+++++. +. .+|.
T Consensus 50 ~~l~~L~L~~~~-l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~------ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAIPD------ 119 (313)
T ss_dssp CCEEEEEEECCC-CSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEECCG------
T ss_pred ceEEEEECCCCC-ccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCcCCH------
Confidence 467777777663 2210 01255666777777777774224443333333 567777777777665 44 3443
Q ss_pred CCcccccCCCccEEeeccCCCcc-ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cc-cccEE
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLT-TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FH-KLKIL 172 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~-~L~~L 172 (410)
.+..+++|++|+++++ .+. ..+... ..+++|++|++++|.+....+.. ++ +|+.|
T Consensus 120 ---~~~~l~~L~~L~Ls~N-~l~~~~p~~~----------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 120 ---FLSQIKTLVTLDFSYN-ALSGTLPPSI----------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp ---GGGGCTTCCEEECCSS-EEESCCCGGG----------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred ---HHhCCCCCCEEeCCCC-ccCCcCChHH----------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 5566677777777766 333 222211 12356666666666665333322 44 78888
Q ss_pred EEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccce
Q 036454 173 HFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLE 252 (410)
Q Consensus 173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~ 252 (410)
++....+.......+..++ |+.|++++|.+....+ ..+..+++|+.|+++++... .. ...+..+++|+
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~~-----~~~~~~l~~L~ 247 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-----VLFGSDKNTQKIHLAKNSLA-FD-----LGKVGLSKNLN 247 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-----GGCCTTSCCSEEECCSSEEC-CB-----GGGCCCCTTCC
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-----HHHhcCCCCCEEECCCCcee-ee-----cCcccccCCCC
Confidence 8855554433334556666 9999999887665433 24567889999999884322 11 22356678999
Q ss_pred EEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchh
Q 036454 253 FLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEI 316 (410)
Q Consensus 253 ~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 316 (410)
+|++++|. ....+|..+..+++|++|+++++. +. .++. ...+++|+.+++.+++.+...
T Consensus 248 ~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~---~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 248 GLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ---GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECCC---STTGGGSCGGGTCSSSEEEST
T ss_pred EEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCCC---CccccccChHHhcCCCCccCC
Confidence 99999985 333577777888999999998874 44 4442 267788888888887655543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.2e-17 Score=166.87 Aligned_cols=254 Identities=22% Similarity=0.144 Sum_probs=158.7
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
.++++|+++++ .++.+|.. + .++|++|+++++. ++.+|. .+++|+.|+++++ .++.++.
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~-l---~~~L~~L~L~~N~-l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDC-L---PAHITTLVIPDNN-LTSLPA------------LPPELRTLEVSGN-QLTSLPV-- 98 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSC-C---CTTCSEEEECSCC-CSCCCC------------CCTTCCEEEECSC-CCSCCCC--
T ss_pred CCCcEEEecCC-CcCccChh-h---CCCCcEEEecCCC-CCCCCC------------cCCCCCEEEcCCC-cCCcCCC--
Confidence 46889999887 56666543 2 2789999999886 776653 4588999999987 4555443
Q ss_pred ccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
.+++|++|++++ |.+..++. .+++|+.|++..+.+..++. .+++|+.|++++|.+..+
T Consensus 99 ---~l~~L~~L~Ls~--------------N~l~~l~~-~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 99 ---LPPGLLELSIFS--------------NPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp ---CCTTCCEEEECS--------------CCCCCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred ---CCCCCCEEECcC--------------CcCCCCCC-CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc
Confidence 335555555544 44443333 35566666665544555442 246777777777766554
Q ss_pred cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCC
Q 036454 207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQ 286 (410)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 286 (410)
.. .+++|+.|+++++ .+.. ....+++|+.|++++| .++.++. .+++|+.|+++++ .
T Consensus 157 ~~---------~~~~L~~L~L~~N-----~l~~----l~~~~~~L~~L~Ls~N--~l~~l~~---~~~~L~~L~L~~N-~ 212 (622)
T 3g06_A 157 PA---------LPSELCKLWAYNN-----QLTS----LPMLPSGLQELSVSDN--QLASLPT---LPSELYKLWAYNN-R 212 (622)
T ss_dssp CC---------CCTTCCEEECCSS-----CCSC----CCCCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSS-C
T ss_pred CC---------ccCCCCEEECCCC-----CCCC----CcccCCCCcEEECCCC--CCCCCCC---ccchhhEEECcCC-c
Confidence 22 2466777777763 2211 1144577777777777 4555543 3467777777665 4
Q ss_pred cccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454 287 LISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC 366 (410)
Q Consensus 287 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 366 (410)
+..++ ..+++|++|++++| .++.++ .. +++|+.|+++++ .++.++. .+++|+.|++++|
T Consensus 213 l~~l~-----~~~~~L~~L~Ls~N-~L~~lp---~~------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 213 LTSLP-----ALPSGLKELIVSGN-RLTSLP---VL------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp CSSCC-----CCCTTCCEEECCSS-CCSCCC---CC------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred ccccC-----CCCCCCCEEEccCC-ccCcCC---CC------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence 55554 33567777777765 455544 22 677777777774 4665554 2677777777766
Q ss_pred CCCcccCCCCCCCCCcceeEecc
Q 036454 367 PKLNTFSAGVLKTPRLQAVQNWE 389 (410)
Q Consensus 367 ~~l~~~~~~~~~~~~L~~l~~~~ 389 (410)
.+..+|..+..+++|+.|++++
T Consensus 272 -~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 272 -QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp -CCCSCCGGGGGSCTTCEEECCS
T ss_pred -CCCcCCHHHhhccccCEEEecC
Confidence 5567777666777777777763
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=8.4e-18 Score=154.86 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=127.7
Q ss_pred CcccEEEeccCcCccc--cCchhHHhhhhccceEeeccccCcc-eEeccCCCCCCCcccccCCCccEEeeccCCCcc-cc
Q 036454 47 RNLVVVRIFDCQSLKN--IFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT-TF 122 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~ 122 (410)
.++++|+++++ .+.. ..+..+ .++++|++|+++++..+. .+|. .+..+++|++|+++++ .+. ..
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~---------~l~~l~~L~~L~Ls~n-~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPP---------AIAKLTQLHYLYITHT-NVSGAI 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCG---------GGGGCTTCSEEEEEEE-CCEEEC
T ss_pred ceEEEEECCCC-CccCCcccChhH-hCCCCCCeeeCCCCCcccccCCh---------hHhcCCCCCEEECcCC-eeCCcC
Confidence 57889999888 4442 223333 688999999998633344 4554 6777888999998887 343 33
Q ss_pred ccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCc-cchhhhhhhcc-cCceEE
Q 036454 123 YSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSD-FFQVGLLQNIH-NLEKLV 197 (410)
Q Consensus 123 ~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~-~~~~~~l~~l~-~L~~L~ 197 (410)
+... ..+ ++|++|++++|.+....+.. +++|++|++..+.+. ..+ ..+..++ +|+.|+
T Consensus 118 p~~~--~~l--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 118 PDFL--SQI--------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMT 180 (313)
T ss_dssp CGGG--GGC--------------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEE
T ss_pred CHHH--hCC--------------CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEE
Confidence 3222 123 55555666655555333221 556666666444444 233 3344554 666666
Q ss_pred EeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccC
Q 036454 198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLT 277 (410)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~ 277 (410)
+++|.+....+ ..+..+. |+.|+++++... ......+..+++|++|++++|. ++..++....+++|+
T Consensus 181 L~~N~l~~~~~-----~~~~~l~-L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 181 ISRNRLTGKIP-----PTFANLN-LAFVDLSRNMLE-----GDASVLFGSDKNTQKIHLAKNS--LAFDLGKVGLSKNLN 247 (313)
T ss_dssp CCSSEEEEECC-----GGGGGCC-CSEEECCSSEEE-----ECCGGGCCTTSCCSEEECCSSE--ECCBGGGCCCCTTCC
T ss_pred CcCCeeeccCC-----hHHhCCc-ccEEECcCCccc-----CcCCHHHhcCCCCCEEECCCCc--eeeecCcccccCCCC
Confidence 66665543322 0122233 666666653211 1122334555666666666652 333333344555666
Q ss_pred EEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccc
Q 036454 278 VLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESI 343 (410)
Q Consensus 278 ~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 343 (410)
+|+++++. +. .++ ..+..+++|++|+++++.-...+|.. +. +++|+.|++.+.+.+
T Consensus 248 ~L~Ls~N~-l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~------l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 248 GLDLRNNR-IYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-GN------LQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCSSC-CEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-TT------GGGSCGGGTCSSSEE
T ss_pred EEECcCCc-ccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-cc------ccccChHHhcCCCCc
Confidence 66665542 33 222 23455556666666554332233332 33 555555555555433
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-18 Score=161.02 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=178.4
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
...+++|++|+++++ .++.+ .|..+..+++|++|++++| .+...++. .++++|++|+++++. +..++.
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~~L~Ls~n~-l~~l~~--- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQI---SAADLAPFTKLELLNLSSN-VLYETLDL---ESLSTLRTLDLNNNY-VQELLV--- 97 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCC---CHHHHTTCTTCCEEECTTS-CCEEEEEE---TTCTTCCEEECCSSE-EEEEEE---
T ss_pred hccCCCCCEEECcCC-ccCcC---CHHHhhCCCcCCEEECCCC-cCCcchhh---hhcCCCCEEECcCCc-cccccC---
Confidence 344679999999998 44433 1356779999999999999 55555453 789999999999986 776653
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKI 171 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~ 171 (410)
.++|+.|+++++ .+..++.. .+ ++|++|++++|.+....+.. +++|+.
T Consensus 98 ----------~~~L~~L~l~~n-~l~~~~~~----~~--------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 98 ----------GPSIETLHAANN-NISRVSCS----RG--------------QGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ----------CTTCCEEECCSS-CCSEEEEC----CC--------------SSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred ----------CCCcCEEECCCC-ccCCcCcc----cc--------------CCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 389999999997 45544332 22 45666666666666554433 678888
Q ss_pred EEEEeCCCccchhhhh-hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454 172 LHFISDGSDFFQVGLL-QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN 250 (410)
Q Consensus 172 L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 250 (410)
|+++...+...+...+ ..+++|+.|++++|.+..+.. ...+++|++|+++++.-. .+ ...+..+++
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~--~l----~~~~~~l~~ 215 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLA--FM----GPEFQSAAG 215 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCC--EE----CGGGGGGTT
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-------ccccccCCEEECCCCcCC--cc----hhhhcccCc
Confidence 8886666665544444 578999999999999887754 445899999999985322 22 233678899
Q ss_pred ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh
Q 036454 251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI 316 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 316 (410)
|++|++++| .++.++..+..+++|++|++++++ +.......+...++.|+.+++.++..++..
T Consensus 216 L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 216 VTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CSEEECTTS--CCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccEEECcCC--cccchhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccCC
Confidence 999999999 677888888889999999998875 431112256688899999998876655443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2e-17 Score=160.29 Aligned_cols=223 Identities=18% Similarity=0.149 Sum_probs=120.9
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
.++++.|+++++. ++.+. +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 74 ~~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------ 140 (452)
T 3zyi_A 74 PSNTRYLNLMENN-IQMIQ---ADTFRHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNW-LTVIPS------ 140 (452)
T ss_dssp CTTCSEEECCSSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSBCCT------
T ss_pred CCCccEEECcCCc-CceEC---HHHcCCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCc-CCccCh------
Confidence 3456666666552 22221 334455666666666655 4444433332 455666666666554 544443
Q ss_pred CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccc-cc---ccccccEEE
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWR-QA---QFHKLKILH 173 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~-~~---~l~~L~~L~ 173 (410)
..+..+++|+.|+++++ .+..++...+. .+++|++|++.+| ...... .. .+++|+.|+
T Consensus 141 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~~--------------~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 141 --GAFEYLSKLRELWLRNN-PIESIPSYAFN-RVPSLMRLDLGEL--------------KKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp --TTSSSCTTCCEEECCSC-CCCEECTTTTT-TCTTCCEEECCCC--------------TTCCEECTTTTTTCTTCCEEE
T ss_pred --hhhcccCCCCEEECCCC-CcceeCHhHHh-cCCcccEEeCCCC--------------CCccccChhhccCCCCCCEEE
Confidence 12344556666666655 34444433332 4455555555443 222211 11 156677777
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
++.+.+...+ .+..+++|+.|++++|.+..+.+ ..+.++++|+.|+++++. +.......+..+++|+.
T Consensus 203 L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 203 LGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRP-----GSFHGLSSLKKLWVMNSQ-----VSLIERNAFDGLASLVE 270 (452)
T ss_dssp CTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECG-----GGGTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCE
T ss_pred CCCCcccccc--cccccccccEEECcCCcCcccCc-----ccccCccCCCEEEeCCCc-----CceECHHHhcCCCCCCE
Confidence 7555555444 35667777777777777666533 245667777777777732 21112334566777888
Q ss_pred EEEecccccccccccC-ccccCccCEEEEcccC
Q 036454 254 LEVKKCALSLISLVPS-SASFRNLTVLKVCNCW 285 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 285 (410)
|++++| .++.++.. +..+++|++|++++++
T Consensus 271 L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 271 LNLAHN--NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECCSS--CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EECCCC--cCCccChHHhccccCCCEEEccCCC
Confidence 888877 45555543 3567778888777653
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=159.69 Aligned_cols=225 Identities=17% Similarity=0.178 Sum_probs=121.1
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
-+..++++.|+++++. ++.+. +..+..+++|++|++++| .+..+++..+ .++++|++|+++++. +..++.
T Consensus 60 ~~~~~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~--- 129 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQ-IQIIK---VNSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDNR-LTTIPN--- 129 (440)
T ss_dssp SCCCTTCSEEECCSCC-CCEEC---TTTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSSC-CSSCCT---
T ss_pred CCCCCCCcEEEccCCc-CCeeC---HHHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCCc-CCeeCH---
Confidence 3334556666666652 33221 234455666666666666 3444443332 456666666666654 554443
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccc-ccccc---ccccc
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTT-WRQAQ---FHKLK 170 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~-~~~~~---l~~L~ 170 (410)
..+..+++|+.|+++++ .+..++...+. .+++|++|++.++ .... +.... +++|+
T Consensus 130 -----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-~l~~L~~L~l~~~--------------~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 130 -----GAFVYLSKLKELWLRNN-PIESIPSYAFN-RIPSLRRLDLGEL--------------KRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp -----TTSCSCSSCCEEECCSC-CCCEECTTTTT-TCTTCCEEECCCC--------------TTCCEECTTTTTTCSSCC
T ss_pred -----hHhhccccCceeeCCCC-cccccCHHHhh-hCcccCEeCCCCC--------------CCcceeCcchhhcccccC
Confidence 13445566666666665 34444433332 4455555555443 2221 11111 56666
Q ss_pred EEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454 171 ILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN 250 (410)
Q Consensus 171 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 250 (410)
.|++..+.+..++ .+..+++|+.|++++|.+..+.+ ..+.++++|+.|+++++. +.......+..+++
T Consensus 189 ~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 189 YLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRP-----GSFQGLMHLQKLWMIQSQ-----IQVIERNAFDNLQS 256 (440)
T ss_dssp EEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCC-----CCEECTTSSTTCTT
T ss_pred eecCCCCcCcccc--ccCCCcccCEEECCCCccCccCh-----hhhccCccCCEEECCCCc-----eeEEChhhhcCCCC
Confidence 6666554555544 35667777777777776665533 235566777777777632 21112334566777
Q ss_pred ceEEEEecccccccccccC-ccccCccCEEEEccc
Q 036454 251 LEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNC 284 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c 284 (410)
|++|++++| .++.++.. +..+++|++|+++++
T Consensus 257 L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 257 LVEINLAHN--NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEEECTTS--CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEECCCC--CCCccChhHhccccCCCEEEcCCC
Confidence 777777777 45555433 355677777777664
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=4.2e-17 Score=157.49 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=151.1
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
+++++|+++++ .+..+++..+ .++++|++|+++++. +..++. ..+..+++|+.|+++++ .++.++...
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSF-KHLRHLEILQLSRNH-IRTIEI--------GAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTT-SSCSSCCEEECCSSC-CCEECG--------GGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccCC-cCCeeCHHHh-hCCCCCCEEECCCCc-CCccCh--------hhccCCccCCEEECCCC-cCCeeCHhH
Confidence 56777777766 4555544333 466777777777665 555543 14455667777777766 455444432
Q ss_pred ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccc
Q 036454 127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCE 202 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 202 (410)
+. .+++|++|++++|.+..+++.. +++|+.|++ .+.....++...+.++++|+.|++++|.
T Consensus 132 ~~---------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 132 FV---------------YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp SC---------------SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred hh---------------ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 21 2256667777777666555433 788999999 4467777777778889999999999998
Q ss_pred cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-cCccccCccCEEEE
Q 036454 203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKV 281 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l 281 (410)
+..+.. +..+++|+.|+++++... .+ ....+..+++|++|++++| .++.++ ..+..+++|++|++
T Consensus 197 l~~~~~-------~~~l~~L~~L~Ls~N~l~--~~---~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 197 LREIPN-------LTPLIKLDELDLSGNHLS--AI---RPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CSSCCC-------CTTCSSCCEEECTTSCCC--EE---CTTTTTTCTTCCEEECTTC--CCCEECTTSSTTCTTCCEEEC
T ss_pred Cccccc-------cCCCcccCEEECCCCccC--cc---ChhhhccCccCCEEECCCC--ceeEEChhhhcCCCCCCEEEC
Confidence 877654 667889999999985222 22 2345778899999999998 455543 44667889999999
Q ss_pred cccCCcccccchhhhhcCCCccEEEeccCc
Q 036454 282 CNCWQLISLVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 282 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
+++ +++.++. .....+++|+.|++++++
T Consensus 263 ~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 263 AHN-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred CCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 876 5766653 345678899999998743
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.8e-17 Score=157.64 Aligned_cols=222 Identities=20% Similarity=0.183 Sum_probs=151.5
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
+++++|+++++ .+..+++..+ .++++|++|+++++. +..++. ..+..+++|+.|+++++ .+..++...
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTF-RHLHHLEVLQLGRNS-IRQIEV--------GAFNGLASLNTLELFDN-WLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred CCccEEECcCC-cCceECHHHc-CCCCCCCEEECCCCc-cCCcCh--------hhccCcccCCEEECCCC-cCCccChhh
Confidence 56777777766 4555544433 467777777777665 555543 14455677777777766 455444432
Q ss_pred ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccc
Q 036454 127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCE 202 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 202 (410)
+. . +++|++|++++|.+..+++.. +++|+.|++ .+.....++...+.++++|+.|++++|.
T Consensus 143 ~~-~--------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 143 FE-Y--------------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp SS-S--------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hc-c--------------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 21 2 356666666666666555433 788999999 4577777777778889999999999998
Q ss_pred cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEE
Q 036454 203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKV 281 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l 281 (410)
+..+.. +..+++|+.|+++++. +.......+..+++|++|++++| .+..+ +..+..+++|++|++
T Consensus 208 l~~~~~-------~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 208 IKDMPN-------LTPLVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNS--QVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp CSSCCC-------CTTCTTCCEEECTTSC-----CSEECGGGGTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEEC
T ss_pred cccccc-------ccccccccEEECcCCc-----CcccCcccccCccCCCEEEeCCC--cCceECHHHhcCCCCCCEEEC
Confidence 877644 6678899999998843 32222455778889999999998 45554 345677889999999
Q ss_pred cccCCcccccchhhhhcCCCccEEEeccCc
Q 036454 282 CNCWQLISLVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 282 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
+++ +++.++. .....+++|++|++++++
T Consensus 274 ~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 877 5766653 344678899999998753
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.6e-17 Score=153.33 Aligned_cols=270 Identities=16% Similarity=0.154 Sum_probs=179.9
Q ss_pred ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454 18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN 97 (410)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 97 (410)
++.....+.++. .++.+ |.+ ..++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 30 C~~~~~c~~~~~-~l~~i----P~~--~~~~L~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------ 93 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSI----PSG--LTEAVKSLDLSNN-RITYISNSDL-QRCVNLQALVLTSNG-INTIEE------ 93 (353)
T ss_dssp ECTTSEEECCST-TCSSC----CTT--CCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CCEECT------
T ss_pred CCCCeEeeCCCC-Ccccc----ccc--ccccCcEEECCCC-cCcccCHHHh-ccCCCCCEEECCCCc-cCccCH------
Confidence 444445555443 33333 444 2357888888877 5666655333 578888888888775 666653
Q ss_pred CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-c---ccccccEEE
Q 036454 98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-A---QFHKLKILH 173 (410)
Q Consensus 98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~---~l~~L~~L~ 173 (410)
..+..+++|++|+++++ .++.++...+. .+ ++|++|++++|.+..++. . .+++|+.|+
T Consensus 94 --~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 94 --DSFSSLGSLEHLDLSYN-YLSNLSSSWFK-PL--------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp --TTTTTCTTCCEEECCSS-CCSSCCHHHHT-TC--------------TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred --hhcCCCCCCCEEECCCC-cCCcCCHhHhC-CC--------------ccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 14566788888888876 45544433221 22 566666777776665554 1 188999999
Q ss_pred EEeC-CCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccce
Q 036454 174 FISD-GSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLE 252 (410)
Q Consensus 174 l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~ 252 (410)
+... .....+...+.++++|+.|++++|.+..+.+ ..+..+++|++|+++++... .+ .......+++|+
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~l~--~~---~~~~~~~~~~L~ 225 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-----KSLKSIQNVSHLILHMKQHI--LL---LEIFVDVTSSVE 225 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-----TTTTTCSEEEEEEEECSCST--TH---HHHHHHHTTTEE
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-----HHHhccccCCeecCCCCccc--cc---hhhhhhhccccc
Confidence 9554 5777766778899999999999998776633 24667899999999984321 11 112345689999
Q ss_pred EEEEeccccccccccc----CccccCccCEEEEcccCCccccc---chhhhhcCCCccEEEeccCcccchhcccc-CCCC
Q 036454 253 FLEVKKCALSLISLVP----SSASFRNLTVLKVCNCWQLISLV---TPQTAKTLVQLRELRVSECNRLEEIVAND-GDAD 324 (410)
Q Consensus 253 ~L~l~~~~~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~ 324 (410)
+|++++|. ++..+. .......++.+++.++. +.... .......+++|++|+++++ .++.++... +.
T Consensus 226 ~L~L~~n~--l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~-- 299 (353)
T 2z80_A 226 CLELRDTD--LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDR-- 299 (353)
T ss_dssp EEEEESCB--CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTT--
T ss_pred EEECCCCc--cccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhc--
Confidence 99999994 544331 12345678888887762 33211 1134578999999999986 666777664 56
Q ss_pred ccccccccceeecCcCc
Q 036454 325 DEIVFSKLKWLFLESSE 341 (410)
Q Consensus 325 ~~~~~~~L~~L~l~~c~ 341 (410)
+++|++|++++++
T Consensus 300 ----l~~L~~L~L~~N~ 312 (353)
T 2z80_A 300 ----LTSLQKIWLHTNP 312 (353)
T ss_dssp ----CTTCCEEECCSSC
T ss_pred ----CCCCCEEEeeCCC
Confidence 8999999999975
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-17 Score=163.06 Aligned_cols=240 Identities=13% Similarity=0.082 Sum_probs=139.1
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
.+++|++|++++| .+..+++..+ +++++|++|+++++. +...+ .+..+++|+.|+++++ .+..++.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV 97 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGG-TTCTTCCEEECTTSC-CEEEE----------ECTTCTTCCEEECCSS-EEEEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCc----------ccccCCCCCEEEecCC-cCCCCCC
Confidence 3446666666666 4444444333 466666666666654 44333 2344566666666665 3333221
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
. ++|+.|++++|.+...++..+++|+.|++..+.+...+...+.++++|+.|++++|.+.
T Consensus 98 ------~--------------~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 98 ------G--------------PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp ------C--------------TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred ------C--------------CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 1 34444444444444444444555666666544444444445567778888888877766
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c 284 (410)
...+ ......+++|++|+++++.-. .+ .....+++|+.|++++| .++.+++.+..+++|++|+++++
T Consensus 158 ~~~~----~~l~~~l~~L~~L~Ls~N~l~--~~-----~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 158 TVNF----AELAASSDTLEHLNLQYNFIY--DV-----KGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEEG----GGGGGGTTTCCEEECTTSCCC--EE-----ECCCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTS
T ss_pred CcCh----HHHhhhCCcccEEecCCCccc--cc-----cccccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCC
Confidence 5433 011125678888888774322 11 12334778888888888 56667666777788888888776
Q ss_pred CCcccccchhhhhcCCCccEEEeccCccc-chhccccCCCCccccccccceeecCcC
Q 036454 285 WQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDGDADDEIVFSKLKWLFLESS 340 (410)
Q Consensus 285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c 340 (410)
.+..++. ....+++|+.|++++++-. ..++..+.. ++.|+.+.+..+
T Consensus 225 -~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~~~~~~------l~~L~~l~~~~~ 272 (487)
T 3oja_A 225 -KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTV 272 (487)
T ss_dssp -CCCEECT--TCCCCTTCCEEECTTCCBCHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred -cCcccch--hhccCCCCCEEEcCCCCCcCcchHHHHHh------CCCCcEEecccc
Confidence 4666553 3566778888888876544 244444555 677777776543
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=5.8e-17 Score=148.74 Aligned_cols=234 Identities=16% Similarity=0.159 Sum_probs=150.9
Q ss_pred CccccccccccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccC--chhHHhhhhccceEeeccccC
Q 036454 9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIF--PTSIARSLLRLETLSIKDCGS 85 (410)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~l~~L~~L~l~~~~~ 85 (410)
...+.+.+..++|++|+++++. ++.+ |.. +..+++|++|+++++ .+.... +..+ ..+++|++|+++++.
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~n~-l~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELESNK-LQSL----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNG- 89 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCSSC-CCCC----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCS-
T ss_pred CcccCCCCCCCCCCEEECCCCc-cCcc----CHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCc-
Confidence 3344455556788899988873 4433 433 468888999999887 444331 2223 468889999998886
Q ss_pred cceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc
Q 036454 86 VEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ 165 (410)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~ 165 (410)
+..++. .+..+++|++|+++++ .+..++.......+++ |+.|++++|.+....+..
T Consensus 90 i~~l~~---------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~--------------L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 90 VITMSS---------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN--------------LIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp EEEEEE---------EEETCTTCCEEECTTS-EEESSTTTTTTTTCTT--------------CCEEECTTSCCEECSTTT
T ss_pred cccChh---------hcCCCCCCCEEECCCC-cccccccchhhhhccC--------------CCEEECCCCcCCccchhh
Confidence 777776 5677888999988887 4544433111123444 455555555444433322
Q ss_pred ---cccccEEEEEeCCCcc-chhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC
Q 036454 166 ---FHKLKILHFISDGSDF-FQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD 241 (410)
Q Consensus 166 ---l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 241 (410)
+++|+.|++....... .....+..+++|+.|++++|.+..+.+ ..+..+++|++|+++++. +....
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~-----l~~~~ 215 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNN-----FFSLD 215 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSC-----CSBCC
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----HHhcCCCCCCEEECCCCc-----cCccC
Confidence 5677777774443332 222456788999999999988777633 245677899999998843 32222
Q ss_pred CccccccccceEEEEecccccccccccCcccc-CccCEEEEcccC
Q 036454 242 SKLDSFLQNLEFLEVKKCALSLISLVPSSASF-RNLTVLKVCNCW 285 (410)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~-~~L~~L~l~~c~ 285 (410)
...+..+++|++|++++|. .....+..+..+ ++|++|++++++
T Consensus 216 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 3346778999999999995 333344455666 489999998864
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.4e-17 Score=151.36 Aligned_cols=202 Identities=17% Similarity=0.140 Sum_probs=124.1
Q ss_pred cCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccC
Q 036454 46 FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG 125 (410)
Q Consensus 46 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 125 (410)
.++|++|+++++ .+..+++..+ .++++|++|+++++. +..+.. ..+..+++|++|+++++..+..++..
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASF-RACRNLTILWLHSNV-LARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCceEEEeeCC-cCCccCHHHc-ccCCCCCEEECCCCc-cceeCH--------hhcCCccCCCEEeCCCCCCccccCHH
Confidence 457777777776 4555544333 567777777777764 555532 14556677777777776445554333
Q ss_pred cccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc
Q 036454 126 MHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE 202 (410)
Q Consensus 126 ~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 202 (410)
.+. .+ ++|++|++++|.+....+.. +++|+.|++....+...+...+..+++|+.|++++|.
T Consensus 100 ~~~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 100 TFH-GL--------------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTT-TC--------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Hhc-CC--------------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 221 23 33444444444444333322 5666666665555555555556778888888888887
Q ss_pred cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEE
Q 036454 203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKV 281 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l 281 (410)
+..+.. ..+..+++|++|+++++... ......+..+++|++|++++| .++.+++ .+..+++|++|++
T Consensus 165 l~~~~~-----~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 165 ISSVPE-----RAFRGLHSLDRLLLHQNRVA-----HVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CCEECT-----TTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEEC
T ss_pred ccccCH-----HHhcCccccCEEECCCCccc-----ccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEec
Confidence 766543 13556788888888874322 112345667888888888888 4555553 3567888888888
Q ss_pred cccC
Q 036454 282 CNCW 285 (410)
Q Consensus 282 ~~c~ 285 (410)
++++
T Consensus 233 ~~N~ 236 (285)
T 1ozn_A 233 NDNP 236 (285)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.2e-16 Score=146.56 Aligned_cols=242 Identities=19% Similarity=0.130 Sum_probs=114.0
Q ss_pred cEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc---cCc
Q 036454 50 VVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY---SGM 126 (410)
Q Consensus 50 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~ 126 (410)
+.++.++. .++.+|.. -.++|++|+++++. ++.++. ..+..+++|+.|+++++ .+.... ...
T Consensus 10 ~~l~c~~~-~l~~ip~~----~~~~l~~L~L~~n~-l~~i~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTG----IPSSATRLELESNK-LQSLPH--------GVFDKLTQLTKLSLSSN-GLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCCCCT--------TTTTTCTTCSEEECCSS-CCCEEEEEEHHH
T ss_pred CEEEcCCC-CcccCCCC----CCCCCCEEECCCCc-cCccCH--------hHhhccccCCEEECCCC-ccCcccCccccc
Confidence 45666655 55666442 34688888888876 776664 13467788888888887 333221 111
Q ss_pred ccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454 127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
..++ +|++|++++|.+..++.. +..+++|+.|+++++.+..+
T Consensus 75 --~~~~--------------~L~~L~Ls~n~i~~l~~~----------------------~~~l~~L~~L~l~~n~l~~~ 116 (306)
T 2z66_A 75 --FGTT--------------SLKYLDLSFNGVITMSSN----------------------FLGLEQLEHLDFQHSNLKQM 116 (306)
T ss_dssp --HSCS--------------CCCEEECCSCSEEEEEEE----------------------EETCTTCCEEECTTSEEESS
T ss_pred --cccc--------------ccCEEECCCCccccChhh----------------------cCCCCCCCEEECCCCccccc
Confidence 1233 444444444443322221 23344555555554443333
Q ss_pred cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc--cccCccccCccCEEEEccc
Q 036454 207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c 284 (410)
.. ...+..+++|++|+++++... . .....+..+++|++|++++|. +.. ++..+..+++|++|+++++
T Consensus 117 ~~----~~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 117 SE----FSVFLSLRNLIYLDISHTHTR-V----AFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp TT----TTTTTTCTTCCEEECTTSCCE-E----CSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS
T ss_pred cc----chhhhhccCCCEEECCCCcCC-c----cchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCC
Confidence 21 011334455555555543211 1 112223445555555555552 222 3344445555555555544
Q ss_pred CCcccccchhhhhcCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccceecCCCcccCCC-CccEEE
Q 036454 285 WQLISLVTPQTAKTLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFP-SLEDLI 362 (410)
Q Consensus 285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~ 362 (410)
.+..++. .....+++|++|+++++. ++.+ +..+.. +++|+.|+++++ .++...... +..+| +|++|+
T Consensus 186 -~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~ 254 (306)
T 2z66_A 186 -QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFPYKC------LNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLN 254 (306)
T ss_dssp -CCCEECT-TTTTTCTTCCEEECTTSC-CSBCCSGGGTT------CTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEE
T ss_pred -CcCCcCH-HHhcCCCCCCEEECCCCc-cCccChhhccC------cccCCEeECCCC-CCcccCHHH-HHhhhccCCEEE
Confidence 2333321 233445555555555542 2222 122333 555666666654 233333221 12342 566666
Q ss_pred EecC
Q 036454 363 VENC 366 (410)
Q Consensus 363 l~~c 366 (410)
++++
T Consensus 255 L~~N 258 (306)
T 2z66_A 255 LTQN 258 (306)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 6554
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=6.4e-17 Score=146.90 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=153.2
Q ss_pred ccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454 5 LQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG 84 (410)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 84 (410)
.+.....+.+.+..++|++|+++++. ++.+. +..+..+++|++|+++++ .+..+.+..+ .++++|++|+++++.
T Consensus 18 c~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~---~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 18 CPQQGLQAVPVGIPAASQRIFLHGNR-ISHVP---AASFRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNA 91 (285)
T ss_dssp CCSSCCSSCCTTCCTTCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCT
T ss_pred cCcCCcccCCcCCCCCceEEEeeCCc-CCccC---HHHcccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCC
Confidence 33334445666677899999999984 44331 345678999999999998 5666655444 689999999999986
Q ss_pred CcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccccc
Q 036454 85 SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQA 164 (410)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~ 164 (410)
.+..++. ..+..+++|+.|+++++ .+..++...+. .+ ++|++|++++|.+...++.
T Consensus 92 ~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l--------------~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 92 QLRSVDP--------ATFHGLGRLHTLHLDRC-GLQELGPGLFR-GL--------------AALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TCCCCCT--------TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCCCCTT
T ss_pred CccccCH--------HHhcCCcCCCEEECCCC-cCCEECHhHhh-CC--------------cCCCEEECCCCcccccCHh
Confidence 5666643 25677899999999998 45554433322 33 4555556666655555443
Q ss_pred c---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC
Q 036454 165 Q---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD 241 (410)
Q Consensus 165 ~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 241 (410)
. +++|+.|++....+...+...+..+++|+.|++++|.+..+.+ ..+..+++|+.|+++++ .+....
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-----~l~~~~ 217 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HAFRDLGRLMTLYLFAN-----NLSALP 217 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSS-----CCSCCC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----hHccCcccccEeeCCCC-----cCCcCC
Confidence 2 7788888887667777776667888999999999988776633 24567889999999984 332223
Q ss_pred CccccccccceEEEEeccc
Q 036454 242 SKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~~ 260 (410)
...+..+++|++|++++|+
T Consensus 218 ~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHHTTCTTCCEEECCSSC
T ss_pred HHHcccCcccCEEeccCCC
Confidence 3456788999999999985
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.3e-16 Score=154.01 Aligned_cols=237 Identities=15% Similarity=0.147 Sum_probs=171.5
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
...+++|+.|+++++. ++.+ .|..+..+++|++|++++| .+...++. +++++|++|+++++. +..++.
T Consensus 30 ~~~~~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~l---~~l~~L~~L~Ls~N~-l~~l~~--- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP-LSQI---SAADLAPFTKLELLNLSSN-VLYETLDL---ESLSTLRTLDLNNNY-VQELLV--- 97 (487)
T ss_dssp STTGGGCCEEECCSSC-CCCC---CGGGGTTCTTCCEEECTTS-CCEEEEEC---TTCTTCCEEECCSSE-EEEEEE---
T ss_pred cccCCCccEEEeeCCc-CCCC---CHHHHhCCCCCCEEEeeCC-CCCCCccc---ccCCCCCEEEecCCc-CCCCCC---
Confidence 3446699999999984 4433 1456789999999999999 55555553 789999999999986 777664
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKI 171 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~ 171 (410)
.++|+.|+++++ .+..++.. .+ ++|+.|++++|.+....+.. +++|+.
T Consensus 98 ----------~~~L~~L~L~~N-~l~~~~~~----~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 98 ----------GPSIETLHAANN-NISRVSCS----RG--------------QGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp ----------CTTCCEEECCSS-CCCCEEEC----CC--------------SSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred ----------CCCcCEEECcCC-cCCCCCcc----cc--------------CCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 289999999998 55544332 22 45666666666666554433 778888
Q ss_pred EEEEeCCCccchhhhh-hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454 172 LHFISDGSDFFQVGLL-QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN 250 (410)
Q Consensus 172 L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 250 (410)
|+++.+.+...+...+ ..+++|+.|++++|.+..+.. ...+++|+.|+++++.-. .+ +..+..+++
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~--~~----~~~~~~l~~ 215 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLA--FM----GPEFQSAAG 215 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCC--EE----CGGGGGGTT
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-------cccCCCCCEEECCCCCCC--CC----CHhHcCCCC
Confidence 8886665555444444 478999999999999887754 446899999999984322 22 234678899
Q ss_pred ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEec
Q 036454 251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVS 308 (410)
Q Consensus 251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 308 (410)
|+.|++++| .++.+|..+..+++|+.|++++++ +.......+...++.|+.+++.
T Consensus 216 L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTS--CCCEECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEecCC--cCcccchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 999999999 677888888889999999998875 3311112455667777777665
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6e-15 Score=130.24 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=134.1
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccc-cccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE-YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS 246 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 246 (410)
+|+.|++....+..++...+.++++|+.|+++++. +..+.. ..+.++++|++|++++|..+ ..+ ....+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l-~~i---~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNL-TYI---DPDALK 102 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTC-CEE---CTTSEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCe-eEc---CHHHhC
Confidence 45555554444445555556777888888888875 666543 13566788888888876666 444 123466
Q ss_pred ccccceEEEEecccccccccccCccccCccC---EEEEcccCCcccccchhhhhcCCCcc-EEEeccCcccchhccccCC
Q 036454 247 FLQNLEFLEVKKCALSLISLVPSSASFRNLT---VLKVCNCWQLISLVTPQTAKTLVQLR-ELRVSECNRLEEIVANDGD 322 (410)
Q Consensus 247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~ 322 (410)
.+++|++|++++| .++.++. +..+++|+ +|++++++.+..++. .....+++|+ +|+++++ .++.++.....
T Consensus 103 ~l~~L~~L~l~~n--~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~ 177 (239)
T 2xwt_C 103 ELPLLKFLGIFNT--GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQGYAFN 177 (239)
T ss_dssp CCTTCCEEEEEEE--CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEECTTTTT
T ss_pred CCCCCCEEeCCCC--CCccccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccCHhhcC
Confidence 7788888888888 4666655 66677777 888887756777653 3356778888 8888875 45566554444
Q ss_pred CCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454 323 ADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW 388 (410)
Q Consensus 323 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~ 388 (410)
.++|+.|++++++.++.++... +..+ ++|++|+++++ .++.+|.. .+++|+.|++.
T Consensus 178 ------~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 178 ------GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp ------TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred ------CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence 4688888888876677776543 4457 88888888775 56677765 47788888875
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=4.2e-15 Score=131.23 Aligned_cols=67 Identities=10% Similarity=0.243 Sum_probs=34.5
Q ss_pred cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
+|++|+++++ .++.+++..+ .++++|++|+++++..++.++. ..+..+++|++|+++++..++.++.
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~--------~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAF-SNLPNISRIYVSIDVTLQQLES--------HSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTT-TTCTTCCEEEEECCSSCCEECT--------TTEESCTTCCEEEEEEETTCCEECT
T ss_pred cccEEEEeCC-cceEECHHHc-cCCCCCcEEeCCCCCCcceeCH--------hHcCCCcCCcEEECCCCCCeeEcCH
Confidence 5666666655 4444444322 4566666666665543555443 1334455666666665334444443
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.4e-14 Score=135.41 Aligned_cols=239 Identities=19% Similarity=0.166 Sum_probs=163.7
Q ss_pred cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454 22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT 101 (410)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 101 (410)
++++.++. +++.+ |.++ .+++++|+++++ .++.+++..+ .++++|++|+++++.....++. ..
T Consensus 12 ~~v~C~~~-~Lt~i----P~~l--~~~l~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~--------~~ 74 (350)
T 4ay9_X 12 RVFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEA--------DV 74 (350)
T ss_dssp TEEEEEST-TCCSC----CTTC--CTTCSEEEEESC-CCSEECTTSS-TTCTTCCEEEEECCTTCCEECT--------TS
T ss_pred CEEEecCC-CCCcc----CcCc--CCCCCEEEccCC-cCCCcCHHHH-cCCCCCCEEECcCCCCCCccCh--------hH
Confidence 45555554 44544 5543 467888888887 6777765443 5788888888888863344543 13
Q ss_pred cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeC
Q 036454 102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISD 177 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~ 177 (410)
+..+++++.+...++..+..++...+. .+ ++|+.|++++|.+...++.. ..++..|++ ...
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQ-NL--------------PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBC-CC--------------TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred hhcchhhhhhhcccCCcccccCchhhh-hc--------------cccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 455677766655554466666554432 33 55666666666665555433 445667777 445
Q ss_pred CCccchhhhhhhc-ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEE
Q 036454 178 GSDFFQVGLLQNI-HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEV 256 (410)
Q Consensus 178 ~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l 256 (410)
.+..++...+..+ ..++.|+++++.+..+.. ......+|+++.+.++..+ ..+. ...+..+++|++|++
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~------~~f~~~~L~~l~l~~~n~l-~~i~---~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHN------SAFNGTQLDELNLSDNNNL-EELP---NDVFHGASGPVILDI 209 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECT------TSSTTEEEEEEECTTCTTC-CCCC---TTTTTTEECCSEEEC
T ss_pred ccccccccchhhcchhhhhhccccccccCCCh------hhccccchhHHhhccCCcc-cCCC---HHHhccCcccchhhc
Confidence 6666665555555 468899999998887755 2334578999999887777 5552 345678899999999
Q ss_pred ecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454 257 KKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE 309 (410)
Q Consensus 257 ~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 309 (410)
++| .++.+|. ..+.+|++|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 210 s~N--~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SRT--RIHSLPS--YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTS--CCCCCCS--SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred CCC--CcCccCh--hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 999 6888876 4588899999989988888873 57889999999975
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=5.5e-15 Score=135.65 Aligned_cols=192 Identities=18% Similarity=0.255 Sum_probs=106.1
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 93 (410)
....+++|+.|++.++ .++.+ ..+..+++|++|++++| .+..+++ +.++++|++|+++++. +..++
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l-----~~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~--- 101 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTI-----EGVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVS--- 101 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCG---
T ss_pred cHHHcCCcCEEEeeCC-CccCc-----hhhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCch---
Confidence 4555777777777776 33322 24556777777777776 4555544 2567777777777765 55442
Q ss_pred CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEE
Q 036454 94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILH 173 (410)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~ 173 (410)
.+..+++|+.|+++++ .+..++. + ..+ ++|++|++++|.+....+
T Consensus 102 -------~~~~l~~L~~L~l~~n-~l~~~~~--l-~~l--------------~~L~~L~l~~n~l~~~~~---------- 146 (308)
T 1h6u_A 102 -------AIAGLQSIKTLDLTST-QITDVTP--L-AGL--------------SNLQVLYLDLNQITNISP---------- 146 (308)
T ss_dssp -------GGTTCTTCCEEECTTS-CCCCCGG--G-TTC--------------TTCCEEECCSSCCCCCGG----------
T ss_pred -------hhcCCCCCCEEECCCC-CCCCchh--h-cCC--------------CCCCEEECCCCccCcCcc----------
Confidence 4455667777777766 3333321 1 122 344444444444332221
Q ss_pred EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454 174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF 253 (410)
Q Consensus 174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~ 253 (410)
+..+++|+.|++++|.+..+.. +..+++|+.|+++++ .+. ....+..+++|++
T Consensus 147 -------------l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n-----~l~--~~~~l~~l~~L~~ 199 (308)
T 1h6u_A 147 -------------LAGLTNLQYLSIGNAQVSDLTP-------LANLSKLTTLKADDN-----KIS--DISPLASLPNLIE 199 (308)
T ss_dssp -------------GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSS-----CCC--CCGGGGGCTTCCE
T ss_pred -------------ccCCCCccEEEccCCcCCCChh-------hcCCCCCCEEECCCC-----ccC--cChhhcCCCCCCE
Confidence 4555666666666665554432 445566666666653 221 1112455666777
Q ss_pred EEEecccccccccccCccccCccCEEEEccc
Q 036454 254 LEVKKCALSLISLVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c 284 (410)
|++++| .+..+++ +..+++|++|+++++
T Consensus 200 L~L~~N--~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 200 VHLKNN--QISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECTTS--CCCBCGG-GTTCTTCCEEEEEEE
T ss_pred EEccCC--ccCcccc-ccCCCCCCEEEccCC
Confidence 777666 3444443 456666777777665
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=140.76 Aligned_cols=250 Identities=18% Similarity=0.065 Sum_probs=146.1
Q ss_pred cccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccc-------cCCCccEEeeccC
Q 036454 44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKF-------IFPSLTFLRLRDL 116 (410)
Q Consensus 44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~ 116 (410)
+..++|++|+++++.. .+ |..+. ..|++|+++++. +....... ... .+++|++|+++++
T Consensus 40 ~~~~~L~~l~l~~n~l--~~-p~~~~---~~L~~L~L~~n~-l~~~~~~~-------~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--AD-LGQFT---DIIKSLSLKRLT-VRAARIPS-------RILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEECTTHHHHCCTT--CC-CHHHH---HHHHHCCCCEEE-EEEEECBH-------HHHHHHHHHHTTSCCCEEEEEEE
T ss_pred ccCCCceeEeeccccc--cc-HHHHH---HHHhhccccccc-ccCCCcCH-------HHHHHHHHhcCcCCccEEEccCC
Confidence 4567788888887743 34 33332 237888888765 54332110 222 5788899998887
Q ss_pred CCcc-ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--c-----ccccEEEEEeCCCccchhhhhh
Q 036454 117 PDLT-TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--F-----HKLKILHFISDGSDFFQVGLLQ 188 (410)
Q Consensus 117 ~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--l-----~~L~~L~l~~~~~~~~~~~~l~ 188 (410)
.+. ..+...+...+ ++|++|++++|.+...+... + ++|++|+++...+...+...++
T Consensus 106 -~l~~~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 106 -EVTGTAPPPLLEATG--------------PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp -BCBSCCCCCSSSCCS--------------CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred -cccchhHHHHHHhcC--------------CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 343 33333211233 44555555555554442111 2 6777777766666666656677
Q ss_pred hcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-
Q 036454 189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV- 267 (410)
Q Consensus 189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~- 267 (410)
++++|+.|++++|.+...... .....+..+++|++|+++++.-. .+.......+..+++|++|++++| .++..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~ 245 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGME--TPSGVCSALAAARVQLQGLDLSHN--SLRDAAG 245 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCC--CHHHHHHHHHHTTCCCSEEECTTS--CCCSSCC
T ss_pred cCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCc--chHHHHHHHHhcCCCCCEEECCCC--cCCcccc
Confidence 788888888888774332110 00111256788888888874211 100000112345678888888888 454433
Q ss_pred -cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454 268 -PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS 340 (410)
Q Consensus 268 -~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 340 (410)
.....+++|++|+++++ .++.++. .. .++|++|+++++ .++.++. +.. +++|+.|++++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~--~~~L~~L~Ls~N-~l~~~p~-~~~------l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFT-GLKQVPK--GL--PAKLSVLDLSYN-RLDRNPS-PDE------LPQVGNLSLKGN 306 (312)
T ss_dssp CSCCCCCTTCCEEECTTS-CCSSCCS--SC--CSEEEEEECCSS-CCCSCCC-TTT------SCEEEEEECTTC
T ss_pred hhhhhhcCCCCEEECCCC-ccChhhh--hc--cCCceEEECCCC-CCCCChh-Hhh------CCCCCEEeccCC
Confidence 33455688888888776 4666653 11 178888888875 5555554 556 888888888874
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=9.2e-16 Score=141.16 Aligned_cols=251 Identities=16% Similarity=0.110 Sum_probs=158.7
Q ss_pred ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCcccc-CchhHH------hhhhccceEeeccccCc
Q 036454 14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNI-FPTSIA------RSLLRLETLSIKDCGSV 86 (410)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~------~~l~~L~~L~l~~~~~l 86 (410)
..+..++|+.|++.++.. .+ |..+... |++|+++++. +... .+..+. .++++|++|+++++. +
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~----p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--AD----LGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLE-V 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CC----CHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-C
T ss_pred EEccCCCceeEeeccccc--cc----HHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-c
Confidence 456678888888888752 22 5543333 8888888773 3221 122110 158899999999987 5
Q ss_pred c-eEeccCCCCCCCccc--ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc
Q 036454 87 E-EIVANDGRGNDAATK--FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ 163 (410)
Q Consensus 87 ~-~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~ 163 (410)
. .+|. .+ ..+++|++|+++++ .+...+... . .++. ...++|++|++++|.+....+
T Consensus 108 ~~~~~~---------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~-~l~~---------~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 108 TGTAPP---------PLLEATGPDLNILNLRNV-SWATRDAWL-A-ELQQ---------WLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp BSCCCC---------CSSSCCSCCCSEEEEESC-BCSSSSSHH-H-HHHT---------TCCTTCCEEEEESCSCCCCCT
T ss_pred cchhHH---------HHHHhcCCCccEEEccCC-CCcchhHHH-H-HHHH---------hhcCCCcEEEeeCCCCccchH
Confidence 5 4444 33 67899999999998 555543211 1 1100 001556666666666655554
Q ss_pred cc---cccccEEEEEeCCCcc-c--hhh-hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454 164 AQ---FHKLKILHFISDGSDF-F--QVG-LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH 236 (410)
Q Consensus 164 ~~---l~~L~~L~l~~~~~~~-~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 236 (410)
.. +++|+.|+++.+.... . +.. .+..+++|+.|++++|.+..+.. .....+..+++|++|+++++ .
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N-----~ 239 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHN-----S 239 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTS-----C
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH--HHHHHHhcCCCCCEEECCCC-----c
Confidence 33 7778888885444322 1 111 12678899999999988764422 11223346789999999884 3
Q ss_pred ccCCC-CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 237 LWNPD-SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 237 ~~~~~-~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
+.... ......+++|++|++++| .++.+|..+. ++|++|+++++ +++.++. ...+++|++|+++++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFT--GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTS--CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred CCcccchhhhhhcCCCCEEECCCC--ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence 32211 233455789999999999 5667776554 88999999876 5776642 578899999999875
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=8.5e-16 Score=138.50 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=86.2
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
...+++|+.|++.++. ++. ..++..+++|++|++++| .+..++. ..++++|++|+++++. +..++.
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~-----~~~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~n~-l~~~~~--- 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKS-----VQGIQYLPNVRYLALGGN-KLHDISA---LKELTNLTYLILTGNQ-LQSLPN--- 102 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCC-----CTTGGGCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECTTSC-CCCCCT---
T ss_pred cccccceeeeeeCCCC-ccc-----ccccccCCCCcEEECCCC-CCCCchh---hcCCCCCCEEECCCCc-cCccCh---
Confidence 4455566666665552 221 223445566666666555 2333321 1455566666665554 444332
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF 174 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l 174 (410)
..+..+++|+.|+++++ .+..++...+. .+ ++|+.|++++|.+.
T Consensus 103 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~n~l~--------------- 146 (272)
T 3rfs_A 103 -----GVFDKLTNLKELVLVEN-QLQSLPDGVFD-KL--------------TNLTYLNLAHNQLQ--------------- 146 (272)
T ss_dssp -----TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCC---------------
T ss_pred -----hHhcCCcCCCEEECCCC-cCCccCHHHhc-cC--------------CCCCEEECCCCccC---------------
Confidence 12344555666665555 33333322111 12 33444444444333
Q ss_pred EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454 175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL 254 (410)
Q Consensus 175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L 254 (410)
..+...+.++++|+.|++++|.+..+.. ..+..+++|++|+++++ .+.......+..+++|+.|
T Consensus 147 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 147 ------SLPKGVFDKLTNLTELDLSYNQLQSLPE-----GVFDKLTQLKDLRLYQN-----QLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCSCCCTTTTTTCTTCCEE
T ss_pred ------ccCHHHhccCccCCEEECCCCCcCccCH-----HHhcCCccCCEEECCCC-----cCCccCHHHHhCCcCCCEE
Confidence 3333344556666666666665554433 12344566666666663 2221122334556666677
Q ss_pred EEeccc
Q 036454 255 EVKKCA 260 (410)
Q Consensus 255 ~l~~~~ 260 (410)
++++|+
T Consensus 211 ~l~~N~ 216 (272)
T 3rfs_A 211 WLHDNP 216 (272)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 766664
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1.7e-14 Score=131.04 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=118.4
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
++.+++++.+++.+. +++.+ |.++ .+++++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~--- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTAL----PPDL--PKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQV--- 72 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSC----CSCC--CTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSC-CCEEEC---
T ss_pred ccccCCccEEECCCC-CCCcC----CCCC--CCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCCc-cCcccC---
Confidence 556677777777765 44443 4443 367777777777 4444444333 567777777777765 666653
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF 174 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l 174 (410)
. ..+++|+.|+++++ .+..++... ..+ ++|+.|++++|.+..
T Consensus 73 ------~-~~l~~L~~L~Ls~N-~l~~l~~~~--~~l--------------~~L~~L~l~~N~l~~-------------- 114 (290)
T 1p9a_G 73 ------D-GTLPVLGTLDLSHN-QLQSLPLLG--QTL--------------PALTVLDVSFNRLTS-------------- 114 (290)
T ss_dssp ------C-SCCTTCCEEECCSS-CCSSCCCCT--TTC--------------TTCCEEECCSSCCCC--------------
T ss_pred ------C-CCCCcCCEEECCCC-cCCcCchhh--ccC--------------CCCCEEECCCCcCcc--------------
Confidence 2 45667777777766 444333211 112 444444444444433
Q ss_pred EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454 175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL 254 (410)
Q Consensus 175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L 254 (410)
.+...+.++++|+.|++++|.+..+.. ..+..+++|+.|++++ +.+.......+..+++|+.|
T Consensus 115 -------l~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~-----N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 115 -------LPLGALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp -------CCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTT-----SCCSCCCTTTTTTCTTCCEE
T ss_pred -------cCHHHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCC-----CcCCccCHHHhcCcCCCCEE
Confidence 333345667777777777777665533 1244567777777776 33322223345667778888
Q ss_pred EEecccccccccccCccccCccCEEEEcccC
Q 036454 255 EVKKCALSLISLVPSSASFRNLTVLKVCNCW 285 (410)
Q Consensus 255 ~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 285 (410)
++++| .++.++..+...++|+.+.+++++
T Consensus 178 ~L~~N--~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 178 LLQEN--SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECCSS--CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ECCCC--cCCccChhhcccccCCeEEeCCCC
Confidence 88777 566677666667777777777653
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=2.6e-14 Score=129.02 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=48.8
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCccc----EEEeCCcccccccccCCCCccccccccceEEEEecccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK----SLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCAL 261 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (410)
.+.++++|+.|++++|.+..+.. ..+..+++|+ +|++++.... .+ ... .....+|++|++++|
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~l~l~L~ls~n~l~--~~---~~~-~~~~~~L~~L~L~~n-- 210 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNLSLDLSLNPMN--FI---QPG-AFKEIRLKELALDTN-- 210 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECG-----GGGHHHHTCTTCCEEEECCSSCCC--EE---CTT-SSCSCCEEEEECCSS--
T ss_pred hhccCCCCCEEECCCCCCCcCCH-----HHhhhhhhccccceeeecCCCccc--cc---Ccc-ccCCCcccEEECCCC--
Confidence 45667777777777776655532 1233334444 6666663211 11 111 122337888888887
Q ss_pred cccccccC-ccccCccCEEEEccc
Q 036454 262 SLISLVPS-SASFRNLTVLKVCNC 284 (410)
Q Consensus 262 ~l~~l~~~-~~~~~~L~~L~l~~c 284 (410)
.++.++.. +..+++|++|+++++
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeecCHhHhcccccccEEEccCC
Confidence 46566544 356788888888765
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.6e-14 Score=132.56 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=126.9
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
.+++|++|++.+| .+..++.. ..+++|++|+++++. +..++ .+..+++|+.|+++++ .+..++.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~~---~~l~~L~~L~L~~n~-i~~~~----------~~~~l~~L~~L~L~~n-~l~~~~~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEGV---QYLNNLIGLELKDNQ-ITDLA----------PLKNLTKITELELSGN-PLKNVSA 102 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTTG---GGCTTCCEEECCSSC-CCCCG----------GGTTCCSCCEEECCSC-CCSCCGG
T ss_pred HcCCcCEEEeeCC-CccCchhh---hccCCCCEEEccCCc-CCCCh----------hHccCCCCCEEEccCC-cCCCchh
Confidence 4666666666666 44444322 456666666666654 44433 2445566666666665 2333221
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
+ ..+ ++|+.|++++|.+ ...+ .+..+++|+.|++++|.+.
T Consensus 103 --~-~~l--------------~~L~~L~l~~n~l---------------------~~~~--~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 103 --I-AGL--------------QSIKTLDLTSTQI---------------------TDVT--PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp --G-TTC--------------TTCCEEECTTSCC---------------------CCCG--GGTTCTTCCEEECCSSCCC
T ss_pred --h-cCC--------------CCCCEEECCCCCC---------------------CCch--hhcCCCCCCEEECCCCccC
Confidence 0 112 3334444443333 2333 2678899999999999887
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c 284 (410)
.+.. +..+++|+.|+++++.-. .+ ..+..+++|++|++++| .++.+++ +..+++|++|+++++
T Consensus 143 ~~~~-------l~~l~~L~~L~l~~n~l~--~~-----~~l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 143 NISP-------LAGLTNLQYLSIGNAQVS--DL-----TPLANLSKLTTLKADDN--KISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp CCGG-------GGGCTTCCEEECCSSCCC--CC-----GGGTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECTTS
T ss_pred cCcc-------ccCCCCccEEEccCCcCC--CC-----hhhcCCCCCCEEECCCC--ccCcChh-hcCCCCCCEEEccCC
Confidence 7654 667899999999985322 22 23778999999999999 5666655 678999999999887
Q ss_pred CCcccccchhhhhcCCCccEEEeccCcccchhcc
Q 036454 285 WQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA 318 (410)
Q Consensus 285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 318 (410)
.+..++ ....+++|++|++++++ ++..+.
T Consensus 206 -~l~~~~---~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 206 -QISDVS---PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp -CCCBCG---GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred -ccCccc---cccCCCCCCEEEccCCe-eecCCe
Confidence 466665 25889999999999863 444433
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=2.3e-14 Score=128.97 Aligned_cols=159 Identities=22% Similarity=0.236 Sum_probs=72.4
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS 265 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 265 (410)
.+.++++|+.|+++++.+..+.. ..+..+++|++|+++++ .+.......+..+++|++|++++| .++.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~-----~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n--~l~~ 123 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPA-----GIFKELKNLETLWVTDN-----KLQALPIGVFDQLVNLAELRLDRN--QLKS 123 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCT-----TTTSSCTTCCEEECCSS-----CCCCCCTTTTTTCSSCCEEECCSS--CCCC
T ss_pred HhcCCCCCCEEECCCCccCeeCh-----hhhcCCCCCCEEECCCC-----cCCcCCHhHcccccCCCEEECCCC--ccCe
Confidence 34455555555555555444322 12234455555555552 221111223344555555555555 3333
Q ss_pred ccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc-ccCCCCccccccccceeecCcCccc
Q 036454 266 LVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDGDADDEIVFSKLKWLFLESSESI 343 (410)
Q Consensus 266 l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l 343 (410)
+++ .+..+++|++|+++++ .+..++. .....+++|++|+++++ .++.++. .+.. +++|+.|+++++ .+
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N-~l 193 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGAFDK------LTELKTLKLDNN-QL 193 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTT------CTTCCEEECCSS-CC
T ss_pred eCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeChhHhcc------CCCcCEEECCCC-cC
Confidence 332 2344555555555544 2444332 12344555555555553 2333322 1233 555555555553 34
Q ss_pred ceecCCCcccCCCCccEEEEecCC
Q 036454 344 TSFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 344 ~~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
+.++.. .+..+++|+.|++.+++
T Consensus 194 ~~~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CcCCHH-HhccccCCCEEEecCCC
Confidence 444332 12345555555555543
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.7e-15 Score=140.80 Aligned_cols=227 Identities=17% Similarity=0.202 Sum_probs=114.3
Q ss_pred CCcEEEecCccccccccccCCcccccc--CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce--EeccCCC
Q 036454 20 QLRELHVFHLPKLTKLWNKDPQGKLIF--RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE--IVANDGR 95 (410)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~ 95 (410)
.++.++++++. +. +..+..+ ++++.|++.++. +....+. + .++++|++|++++|. +.. ++.
T Consensus 48 ~~~~l~l~~~~-~~------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~-~~~~~L~~L~L~~~~-l~~~~~~~---- 112 (336)
T 2ast_B 48 LWQTLDLTGKN-LH------PDVTGRLLSQGVIAFRCPRSF-MDQPLAE-H-FSPFRVQHMDLSNSV-IEVSTLHG---- 112 (336)
T ss_dssp TSSEEECTTCB-CC------HHHHHHHHHTTCSEEECTTCE-ECSCCCS-C-CCCBCCCEEECTTCE-ECHHHHHH----
T ss_pred hheeecccccc-CC------HHHHHhhhhccceEEEcCCcc-ccccchh-h-ccCCCCCEEEccCCC-cCHHHHHH----
Confidence 36777777653 11 2233345 788888888773 3333232 2 467888888888875 432 333
Q ss_pred CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEE
Q 036454 96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFI 175 (410)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~ 175 (410)
.+..+++|++|+++++. +.......+. .+++|++|++++| . .+...
T Consensus 113 -----~~~~~~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~---~----------~l~~~-------------- 158 (336)
T 2ast_B 113 -----ILSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGC---S----------GFSEF-------------- 158 (336)
T ss_dssp -----HHTTBCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTC---B----------SCCHH--------------
T ss_pred -----HHhhCCCCCEEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCC---C----------CCCHH--------------
Confidence 45667888888888873 4322222221 3455555544444 1 11100
Q ss_pred eCCCccchhhhhhhcccCceEEEecc-ccccccccchhhccccccC-cccEEEeCCcc-cccccccCCCCccccccccce
Q 036454 176 SDGSDFFQVGLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIA-QIKSLKLKKLW-LIEEHLWNPDSKLDSFLQNLE 252 (410)
Q Consensus 176 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~~~~~~~~~~L~ 252 (410)
.....+.++++|+.|++++| .+.... .......++ +|++|++++|. .+ ..- .-...+..+++|+
T Consensus 159 ------~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~-~~~--~l~~~~~~~~~L~ 225 (336)
T 2ast_B 159 ------ALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNL-QKS--DLSTLVRRCPNLV 225 (336)
T ss_dssp ------HHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGS-CHH--HHHHHHHHCTTCS
T ss_pred ------HHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhcccCCCEEEeCCCcccC-CHH--HHHHHHhhCCCCC
Confidence 00122345555666666555 443210 001233445 66666666543 12 100 0012234566666
Q ss_pred EEEEeccccccc-ccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 253 FLEVKKCALSLI-SLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 253 ~L~l~~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
+|++++|. .++ ..+..+..+++|++|++++|..+..... .....+++|++|++++|
T Consensus 226 ~L~l~~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 226 HLDLSDSV-MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCT-TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred EEeCCCCC-cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 66666664 333 2333445566677777766653332211 12355667777777666
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=2.4e-14 Score=130.15 Aligned_cols=161 Identities=22% Similarity=0.219 Sum_probs=87.4
Q ss_pred cchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454 181 FFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 181 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 260 (410)
..+...+.++++|+.|+++++.+..+.. ...+++|++|++++. .+.. .+..+..+++|++|++++|
T Consensus 45 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~Ls~N-----~l~~-l~~~~~~l~~L~~L~l~~N- 110 (290)
T 1p9a_G 45 TFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHN-----QLQS-LPLLGQTLPALTVLDVSFN- 110 (290)
T ss_dssp EEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSS-----CCSS-CCCCTTTCTTCCEEECCSS-
T ss_pred ccCHHHhhcCCCCCEEECCCCccCcccC-------CCCCCcCCEEECCCC-----cCCc-CchhhccCCCCCEEECCCC-
Confidence 3333456677888888888777666544 245677777777762 2211 1223455667777777776
Q ss_pred ccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc-CCCCccccccccceeecC
Q 036454 261 LSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND-GDADDEIVFSKLKWLFLE 338 (410)
Q Consensus 261 ~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~~~L~~L~l~ 338 (410)
.++.++ ..+..+++|++|+++++ .+..++. .....+++|+.|+++++ .++.++... .. +++|+.|+++
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~------l~~L~~L~L~ 180 (290)
T 1p9a_G 111 -RLTSLPLGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPAGLLNG------LENLDTLLLQ 180 (290)
T ss_dssp -CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCTTTTTT------CTTCCEEECC
T ss_pred -cCcccCHHHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccCHHHhcC------cCCCCEEECC
Confidence 455544 23455666666666555 3544432 22345566666666653 344443322 23 5566666666
Q ss_pred cCcccceecCCCcccCCCCccEEEEecCCC
Q 036454 339 SSESITSFCSGNYAFSFPSLEDLIVENCPK 368 (410)
Q Consensus 339 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 368 (410)
++ .++.++... ..+++|+.+++.++|.
T Consensus 181 ~N-~l~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 181 EN-SLYTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SS-CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred CC-cCCccChhh--cccccCCeEEeCCCCc
Confidence 53 344444432 2345566666555443
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=3.9e-14 Score=132.38 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=137.5
Q ss_pred CccccccccccCCcEEEecCccccccccccCCc-cccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc
Q 036454 9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQ-GKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE 87 (410)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 87 (410)
...++|-+-.+++++|+++++ .++.+ |. .+..+++|++|++++|...+.+++.. +.++++++++...++..+.
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~N-~i~~i----~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVLT-KLRVI----QKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEESC-CCSEE----CTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEEEETTCC
T ss_pred CCCccCcCcCCCCCEEEccCC-cCCCc----CHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcccCCccc
Confidence 334455444679999999997 56655 43 46789999999999996556554433 3578888887666666688
Q ss_pred eEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------Cc-cccccEEEeec
Q 036454 88 EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DV-FANLEELTLSK 155 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~-l~~L~~L~i~~ 155 (410)
.++. ..+..+++|++|+++++ .+..++..... ...++..+++.++ .. ...++.|++++
T Consensus 94 ~l~~--------~~f~~l~~L~~L~l~~n-~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 94 YINP--------EAFQNLPNLQYLLISNT-GIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EECT--------TSBCCCTTCCEEEEEEE-CCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred ccCc--------hhhhhcccccccccccc-ccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 8865 25677899999999998 56665544332 4456677777665 11 12456666666
Q ss_pred cCcccccccc--cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454 156 CIFTTWRQAQ--FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL 232 (410)
Q Consensus 156 ~~~~~~~~~~--l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 232 (410)
|.+..+++.. ..+|+.|++ .+..+..++...+.++++|+.|+++++++..+.. ..+.+|++|.+.++.+
T Consensus 164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--------~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--------YGLENLKKLRARSTYN 235 (350)
T ss_dssp SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--------SSCTTCCEEECTTCTT
T ss_pred ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--------hhhccchHhhhccCCC
Confidence 6666555443 445555555 3455556665555666666666666666555432 2345555555555554
Q ss_pred ccccccCCCCccccccccceEEEEec
Q 036454 233 IEEHLWNPDSKLDSFLQNLEFLEVKK 258 (410)
Q Consensus 233 l~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (410)
+ ..+ ..+..+++|+.+++.+
T Consensus 236 l-~~l-----P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 L-KKL-----PTLEKLVALMEASLTY 255 (350)
T ss_dssp C-CCC-----CCTTTCCSCCEEECSC
T ss_pred c-CcC-----CCchhCcChhhCcCCC
Confidence 4 333 1234455555555544
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.1e-15 Score=139.05 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=68.1
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS- 265 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~- 265 (410)
+.++++|+.|++++|.+..... ..+..+++|++|++++|..+ ... .....+..+++|++|++++|. .++.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~-----~~l~~~~~L~~L~L~~~~~l-~~~--~l~~~~~~~~~L~~L~l~~~~-~l~~~ 184 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIV-----NTLAKNSNLVRLNLSGCSGF-SEF--ALQTLLSSCSRLDELNLSWCF-DFTEK 184 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHH-----HHHTTCTTCSEEECTTCBSC-CHH--HHHHHHHHCTTCCEEECCCCT-TCCHH
T ss_pred HhhCCCCCEEeCcCcccCHHHH-----HHHhcCCCCCEEECCCCCCC-CHH--HHHHHHhcCCCCCEEcCCCCC-CcChH
Confidence 3445555555555554332111 12233455555555554333 110 001123445555555555553 2322
Q ss_pred -cccCccccC-ccCEEEEcccC-CcccccchhhhhcCCCccEEEeccCcccc-hhccccCCCCccccccccceeecCcCc
Q 036454 266 -LVPSSASFR-NLTVLKVCNCW-QLISLVTPQTAKTLVQLRELRVSECNRLE-EIVANDGDADDEIVFSKLKWLFLESSE 341 (410)
Q Consensus 266 -l~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~c~ 341 (410)
++..+..++ +|++|++++|. .+..-........+++|++|++++|..++ ..+..++. +++|+.|++++|.
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~------l~~L~~L~l~~~~ 258 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------LNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG------CTTCCEEECTTCT
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC------CCCCCEeeCCCCC
Confidence 223334444 55555555543 22211111233445555555555554322 22333333 4555555555554
Q ss_pred ccceecCCCcccCCCCccEEEEecC
Q 036454 342 SITSFCSGNYAFSFPSLEDLIVENC 366 (410)
Q Consensus 342 ~l~~~~~~~~~~~~~~L~~L~l~~c 366 (410)
.+.+.... ....+++|++|++.+|
T Consensus 259 ~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred CCCHHHHH-HHhcCCCCCEEeccCc
Confidence 33322111 1123555555555555
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=3.7e-15 Score=134.29 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++|+.|++++|.+..+.. ..+..+++|+.|+++++ .+.......+..+++|++|++++| .++.+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~ 196 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPK-----GVFDKLTNLTELDLSYN-----QLQSLPEGVFDKLTQLKDLRLYQN--QLKSV 196 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSS--CCSCC
T ss_pred hccCCCCCEEECCCCccCccCH-----HHhccCccCCEEECCCC-----CcCccCHHHhcCCccCCEEECCCC--cCCcc
Confidence 4555666666666665554432 12234555555555553 121111222344555555555555 23333
Q ss_pred ccC-ccccCccCEEEEccc
Q 036454 267 VPS-SASFRNLTVLKVCNC 284 (410)
Q Consensus 267 ~~~-~~~~~~L~~L~l~~c 284 (410)
++. +..+++|++|+++++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHHhCCcCCCEEEccCC
Confidence 322 344555555555444
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=6e-14 Score=126.18 Aligned_cols=201 Identities=20% Similarity=0.190 Sum_probs=110.0
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
+..+.+++++++. .++.+|.. -.+++++|+++++. +..++. ..+..+++|++|+++++ .+..++.
T Consensus 14 c~~~~~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~i~~ 78 (270)
T 2o6q_A 14 CNNNKNSVDCSSK-KLTAIPSN----IPADTKKLDLQSNK-LSSLPS--------KAFHRLTKLRLLYLNDN-KLQTLPA 78 (270)
T ss_dssp EETTTTEEECTTS-CCSSCCSC----CCTTCSEEECCSSC-CSCCCT--------TSSSSCTTCCEEECCSS-CCSCCCT
T ss_pred eCCCCCEEEccCC-CCCccCCC----CCCCCCEEECcCCC-CCeeCH--------HHhcCCCCCCEEECCCC-ccCeeCh
Confidence 4456888998877 56666442 23679999999886 766654 24667889999999887 5555554
Q ss_pred CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454 125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK 204 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 204 (410)
..+. .+ ++|++|++++|.+..+++ ..+..+++|+.|+++++.+.
T Consensus 79 ~~~~-~l--------------~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 79 GIFK-EL--------------KNLETLWVTDNKLQALPI---------------------GVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp TTTS-SC--------------TTCCEEECCSSCCCCCCT---------------------TTTTTCSSCCEEECCSSCCC
T ss_pred hhhc-CC--------------CCCCEEECCCCcCCcCCH---------------------hHcccccCCCEEECCCCccC
Confidence 4322 23 445555555554443332 23344555555555555544
Q ss_pred cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcc
Q 036454 205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCN 283 (410)
Q Consensus 205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~ 283 (410)
.+.. ..+..+++|++|+++++ .+.......+..+++|++|++++| .++.+++. +..+++|++|++++
T Consensus 123 ~~~~-----~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 123 SLPP-----RVFDSLTKLTYLSLGYN-----ELQSLPKGVFDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred eeCH-----HHhCcCcCCCEEECCCC-----cCCccCHhHccCCcccceeEecCC--cCcEeChhHhccCCCcCEEECCC
Confidence 4322 12334555555555552 221111222445566666666665 34444332 34556666666655
Q ss_pred cCCcccccchhhhhcCCCccEEEeccC
Q 036454 284 CWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 284 c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
+ .++.++. .....+++|+.|+++++
T Consensus 191 N-~l~~~~~-~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 191 N-QLKRVPE-GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp S-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred C-cCCcCCH-HHhccccCCCEEEecCC
Confidence 4 3444432 22345566666666553
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=6.5e-14 Score=126.35 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=114.0
Q ss_pred ccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcc
Q 036454 146 ANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQI 222 (410)
Q Consensus 146 ~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L 222 (410)
+++++|++++|.+....+.. +++|+.|+++...+...+...+.++++|+.|++++|.+..+.. ..+.++++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-----hhhcCCccc
Confidence 45677777777666555422 6677777775555666665556677777777777776655542 134566777
Q ss_pred cEEEeCCcccccccccCCCCccccccccceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccchhhhhcCC
Q 036454 223 KSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLV 300 (410)
Q Consensus 223 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 300 (410)
++|+++++. +.......+..+++|++|++++| .++. ++..+..+++|++|+++++ .++.++. .....++
T Consensus 103 ~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 173 (276)
T 2z62_A 103 QKLVAVETN-----LASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC-TDLRVLH 173 (276)
T ss_dssp CEEECTTSC-----CCCSTTCCCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG-GGGHHHH
T ss_pred cEEECCCCC-----ccccCchhcccCCCCCEEECcCC--ccceecCchhhccCCCCCEEECCCC-CCCcCCH-HHhhhhh
Confidence 777777632 21112223556677777777777 3433 4455666677777777665 3444432 1222333
Q ss_pred Ccc----EEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454 301 QLR----ELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 301 ~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 367 (410)
+|+ +|+++++ .++.++..... ..+|+.|+++++. ++.++.. .+..+++|++|++.+++
T Consensus 174 ~L~~l~l~L~ls~n-~l~~~~~~~~~------~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 QMPLLNLSLDLSLN-PMNFIQPGAFK------EIRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCTTCCEEEECCSS-CCCEECTTSSC------SCCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSSC
T ss_pred hccccceeeecCCC-cccccCccccC------CCcccEEECCCCc-eeecCHh-HhcccccccEEEccCCc
Confidence 333 6666653 34444433333 4467777777643 5555443 23456677777776543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=125.86 Aligned_cols=207 Identities=16% Similarity=0.037 Sum_probs=132.0
Q ss_pred cccccEEEEEeCCCccchhhhh--hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454 166 FHKLKILHFISDGSDFFQVGLL--QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK 243 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 243 (410)
+++|++|++....+.......+ ..+++|+.|++++|.+...... ........+++|++|+++++ .+......
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQQWLKPGLKVLSIAQA-----HSPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHHTTBCSCCCEEEEECC-----SSCCCCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHHhhhccCCCEEEeeCC-----CcchhhHH
Confidence 3445555553333332222223 6778889999988876653220 11122346788999999884 33223344
Q ss_pred cccccccceEEEEecccccccc--cc--cCccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCcccchhc
Q 036454 244 LDSFLQNLEFLEVKKCALSLIS--LV--PSSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECNRLEEIV 317 (410)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~ 317 (410)
.+..+++|++|++++|. .... ++ ...+.+++|++|++++| +++.++.. .....+++|++|+++++.-....|
T Consensus 164 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp SCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 56788899999999985 3221 22 22367889999999887 46555421 123678999999999864333335
Q ss_pred cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454 318 ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL 390 (410)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~ 390 (410)
..+.. ...+++|++|+++++ .++.++... .++|++|++++| .++.+|. ...+++|++|++++|
T Consensus 242 ~~~~~---~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 242 PSAPR---CMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCSS---CCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred hhHHh---ccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 54444 001379999999985 577776543 489999999887 5666665 456899999999733
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=4.9e-15 Score=140.46 Aligned_cols=118 Identities=16% Similarity=0.060 Sum_probs=70.3
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccc---ccccCCCCccccccccceEEEEeccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIE---EHLWNPDSKLDSFLQNLEFLEVKKCALS 262 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 262 (410)
.+..+++|+.|++++|.+.........+..+..+++|++|+++++...+ ..+ ...+..+++|++|++++|.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l----~~~l~~~~~L~~L~L~~n~-- 255 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCL-- 255 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCC--
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH----HHHHccCCCcCEEECCCCC--
Confidence 4567778888888887765221000111134567788888888754310 011 2345677888888888884
Q ss_pred ccc-----cccCc--cccCccCEEEEcccCCccc-----ccchhhhhcCCCccEEEeccCc
Q 036454 263 LIS-----LVPSS--ASFRNLTVLKVCNCWQLIS-----LVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 263 l~~-----l~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
++. ++..+ +.+++|++|++++|. +.. ++. .....+++|++|++++|.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence 332 23333 237888888887773 554 321 222557888888888864
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=1.3e-12 Score=115.97 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=76.6
Q ss_pred cEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeC
Q 036454 149 EELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLK 228 (410)
Q Consensus 149 ~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 228 (410)
+.++.+++....++....++++.|++....+...+...+.++++|+.|+++++.+..+.. ..+..+++|++|+++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDLTELGTLGLA 91 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECT
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----hHhccCCcCCEEECC
Confidence 334444433333333223334444443333333333344555666666666655544432 123445556666665
Q ss_pred CcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEe
Q 036454 229 KLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRV 307 (410)
Q Consensus 229 ~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 307 (410)
+ +.+.......+..+++|++|++++| .++.+++. +..+++|++|+++++ ++..++. .....+++|++|++
T Consensus 92 ~-----n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L 162 (251)
T 3m19_A 92 N-----NQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSL 162 (251)
T ss_dssp T-----SCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEEC
T ss_pred C-----CcccccChhHhcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEEC
Confidence 5 2222112233445556666666655 34444432 244555555555544 3444432 22344555555555
Q ss_pred ccCcccchhcc-ccCCCCccccccccceeecCc
Q 036454 308 SECNRLEEIVA-NDGDADDEIVFSKLKWLFLES 339 (410)
Q Consensus 308 ~~c~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~ 339 (410)
+++ .++.++. .+.. +++|+.|++++
T Consensus 163 ~~N-~l~~~~~~~~~~------l~~L~~L~l~~ 188 (251)
T 3m19_A 163 STN-QLQSVPHGAFDR------LGKLQTITLFG 188 (251)
T ss_dssp CSS-CCSCCCTTTTTT------CTTCCEEECCS
T ss_pred CCC-cCCccCHHHHhC------CCCCCEEEeeC
Confidence 553 2222222 2333 45555555555
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.6e-13 Score=130.01 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=100.8
Q ss_pred ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc----ccc
Q 036454 191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL----ISL 266 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l----~~l 266 (410)
++|+.|++++|.+...... .....+..+++|++|++++|...+..+.......+..+++|++|++++|. .- ..+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 8999999999886522110 01113446789999999986322000000001146678999999999995 21 445
Q ss_pred ccCccccCccCEEEEcccCCcccccch---hhh--hcCCCccEEEeccCcccc----hhcccc-CCCCccccccccceee
Q 036454 267 VPSSASFRNLTVLKVCNCWQLISLVTP---QTA--KTLVQLRELRVSECNRLE----EIVAND-GDADDEIVFSKLKWLF 336 (410)
Q Consensus 267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~--~~l~~L~~L~l~~c~~l~----~~~~~~-~~~~~~~~~~~L~~L~ 336 (410)
+..+..+++|++|++++|. +...... ..+ ..+++|++|++++|.--. .++..+ .. +++|++|+
T Consensus 237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~------l~~L~~L~ 309 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK------MPDLLFLE 309 (386)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH------CTTCCEEE
T ss_pred HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc------CCCceEEE
Confidence 6666788999999998884 5544211 222 238999999999874333 255544 33 79999999
Q ss_pred cCcCcccceec--CCCcccCCCCccEEEEe
Q 036454 337 LESSESITSFC--SGNYAFSFPSLEDLIVE 364 (410)
Q Consensus 337 l~~c~~l~~~~--~~~~~~~~~~L~~L~l~ 364 (410)
+++++ ++... .......++.++...+.
T Consensus 310 l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 310 LNGNR-FSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp CTTSB-SCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred ccCCc-CCcchhHHHHHHHHhhhcCcchhh
Confidence 99965 44332 12223335666555553
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=8.4e-13 Score=119.99 Aligned_cols=170 Identities=19% Similarity=0.243 Sum_probs=89.7
Q ss_pred cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
...+++|+.|+++++ .++.+ +++..+++|++|++++| .+..+++ ..++++|++|+++++. +..++
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~---- 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSV-----QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLS---- 106 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGG----
T ss_pred hhhcCcccEEEccCC-CcccC-----hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCCh----
Confidence 445566666666655 22221 23445566666666655 3444433 1455666666666554 44332
Q ss_pred CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454 95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF 174 (410)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l 174 (410)
.+..+++|+.|+++++ .+..++. + ..+ ++|+.|++++|.+
T Consensus 107 ------~l~~l~~L~~L~L~~n-~i~~~~~--l-~~l--------------~~L~~L~l~~n~l---------------- 146 (291)
T 1h6t_A 107 ------SLKDLKKLKSLSLEHN-GISDING--L-VHL--------------PQLESLYLGNNKI---------------- 146 (291)
T ss_dssp ------GGTTCTTCCEEECTTS-CCCCCGG--G-GGC--------------TTCCEEECCSSCC----------------
T ss_pred ------hhccCCCCCEEECCCC-cCCCChh--h-cCC--------------CCCCEEEccCCcC----------------
Confidence 3444555666655555 3332211 0 011 3333334433333
Q ss_pred EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454 175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL 254 (410)
Q Consensus 175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L 254 (410)
... ..+..+++|+.|++++|.+..+.. +..+++|+.|+++++ .+.. ...+..+++|+.|
T Consensus 147 -----~~~--~~l~~l~~L~~L~L~~N~l~~~~~-------l~~l~~L~~L~L~~N-----~i~~--l~~l~~l~~L~~L 205 (291)
T 1h6t_A 147 -----TDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLSKN-----HISD--LRALAGLKNLDVL 205 (291)
T ss_dssp -----CCC--GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECCSS-----CCCB--CGGGTTCTTCSEE
T ss_pred -----Ccc--hhhccCCCCCEEEccCCccccchh-------hcCCCccCEEECCCC-----cCCC--ChhhccCCCCCEE
Confidence 232 245667777777777777665543 556677788877773 2211 1235667788888
Q ss_pred EEeccc
Q 036454 255 EVKKCA 260 (410)
Q Consensus 255 ~l~~~~ 260 (410)
++++|.
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 888874
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=124.17 Aligned_cols=193 Identities=15% Similarity=0.135 Sum_probs=123.8
Q ss_pred ccCcccEEEeccCcCccccCchhHH-hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIA-RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
.+++|++|++++| .+....+..++ .++++|++|+++++. +..... ......+..+++|++|+++++ .+...+
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~----~~~~~~~~~~~~L~~L~Ls~n-~l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVS-WATGRS----WLAELQQWLKPGLKVLSIAQA-HSPAFS 161 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTS----SHHHHHTTBCSCCCEEEEECC-SSCCCC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeeccc-ccchhh----hhHHHHhhhccCCCEEEeeCC-Ccchhh
Confidence 3466788888777 34433343332 467778888887765 432110 000002234677788888776 445554
Q ss_pred cCcccCCCCCceEEEEccC--------------CccccccEEEeeccCccccccc------ccccccEEEEEeCCCccch
Q 036454 124 SGMHILECPELRKLEVNHV--------------DVFANLEELTLSKCIFTTWRQA------QFHKLKILHFISDGSDFFQ 183 (410)
Q Consensus 124 ~~~~~~~~~~L~~L~l~~~--------------~~l~~L~~L~i~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~ 183 (410)
...+. .+++|++|+++++ ..+++|++|++++|.+...... .+++|+.|+++.+.+....
T Consensus 162 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 162 CEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred HHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 44433 5677888877776 2467788888988888654432 1689999999666655542
Q ss_pred hhhhhhc---ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454 184 VGLLQNI---HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA 260 (410)
Q Consensus 184 ~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 260 (410)
...+..+ ++|+.|++++|.+..++. ...++|+.|++++ +.+.. ......+++|++|++++|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------~~~~~L~~L~Ls~-----N~l~~--~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQVPK--------GLPAKLRVLDLSS-----NRLNR--APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSCCS--------CCCSCCSCEECCS-----CCCCS--CCCTTSCCCCSCEECSSTT
T ss_pred hhhHHhccCcCcCCEEECCCCCCCchhh--------hhcCCCCEEECCC-----CcCCC--CchhhhCCCccEEECcCCC
Confidence 1223333 799999999999886644 1238999999998 44421 1235778999999999995
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2e-13 Score=128.16 Aligned_cols=257 Identities=15% Similarity=0.049 Sum_probs=135.7
Q ss_pred EEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCC-CccEEeeccCCCccccccCcccCC
Q 036454 52 VRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP-SLTFLRLRDLPDLTTFYSGMHILE 130 (410)
Q Consensus 52 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~ 130 (410)
..++.+ .+....+ .+....++|++|+++++. +...+... ....+..++ +|++|+++++ .+.......+...
T Consensus 3 ~~ls~n-~~~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~~~----l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLH-PGSNPVE-EFTSIPHGVTSLDLSLNN-LYSISTVE----LIQAFANTPASVTSLNLSGN-SLGFKNSDELVQI 74 (362)
T ss_dssp EECCCC-TTCCHHH-HHHTSCTTCCEEECTTSC-GGGSCHHH----HHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHH
T ss_pred cccccc-cchHHHH-HHHhCCCCceEEEccCCC-CChHHHHH----HHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHH
Confidence 445555 3443323 233445559999999886 66544200 001445667 8999999988 5554322221100
Q ss_pred CCCceEEEEccCCccccccEEEeeccCcccccccc-------c-ccccEEEEEeCCCccchhhhhh----h-cccCceEE
Q 036454 131 CPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-------F-HKLKILHFISDGSDFFQVGLLQ----N-IHNLEKLV 197 (410)
Q Consensus 131 ~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-------l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~ 197 (410)
+. ...++|++|++++|.+....... . ++|+.|+++.+.+...+...+. . .++|+.|+
T Consensus 75 l~----------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 75 LA----------AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp HH----------TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred Hh----------ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE
Confidence 00 00134555555555544332221 2 5677777755555554443333 2 25888888
Q ss_pred EeccccccccccchhhccccccC-cccEEEeCCcccccccccCCCCc----ccccc-ccceEEEEecccccccc-----c
Q 036454 198 LSTCEYKKIFSCEEVEEHAEGIA-QIKSLKLKKLWLIEEHLWNPDSK----LDSFL-QNLEFLEVKKCALSLIS-----L 266 (410)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~l~~-----l 266 (410)
+++|.+.......+ ...+..++ +|++|+++++.-. ..+.. .+..+ ++|++|++++|. +.. +
T Consensus 145 Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l 216 (362)
T 3goz_A 145 LRGNDLGIKSSDEL-IQILAAIPANVNSLNLRGNNLA-----SKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAEL 216 (362)
T ss_dssp CTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSCGG-----GSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHH
T ss_pred ccCCcCCHHHHHHH-HHHHhcCCccccEeeecCCCCc-----hhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHH
Confidence 88877653221000 01122333 7888888875322 11111 22334 488888888883 443 3
Q ss_pred ccCccc-cCccCEEEEcccCCcccccch---hhhhcCCCccEEEeccCc-------ccchhccccCCCCcccccccccee
Q 036454 267 VPSSAS-FRNLTVLKVCNCWQLISLVTP---QTAKTLVQLRELRVSECN-------RLEEIVANDGDADDEIVFSKLKWL 335 (410)
Q Consensus 267 ~~~~~~-~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~~~~~~~~L~~L 335 (410)
+..+.. .++|++|+++++ .+...+.. .....+++|++|++++|. .+..+...... +++|+.|
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~------l~~L~~L 289 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN------IQKIILV 289 (362)
T ss_dssp HHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT------CCEEEEE
T ss_pred HHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc------CCceEEE
Confidence 333333 357888888776 45554321 223566788888888764 12333344444 7778888
Q ss_pred ecCcCc
Q 036454 336 FLESSE 341 (410)
Q Consensus 336 ~l~~c~ 341 (410)
++++.+
T Consensus 290 dL~~N~ 295 (362)
T 3goz_A 290 DKNGKE 295 (362)
T ss_dssp CTTSCB
T ss_pred ecCCCc
Confidence 887743
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=1.7e-13 Score=128.67 Aligned_cols=251 Identities=13% Similarity=0.016 Sum_probs=114.9
Q ss_pred cccccCCcEEEecCccccccccc-cCCccccccC-cccEEEeccCcCccccCchhHHhhh-----hccceEeeccccCcc
Q 036454 15 SGAATQLRELHVFHLPKLTKLWN-KDPQGKLIFR-NLVVVRIFDCQSLKNIFPTSIARSL-----LRLETLSIKDCGSVE 87 (410)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~ 87 (410)
+...++|+.|+++++. ++.... .....+..++ +|++|++++| .+....+..+. .+ ++|++|++++|. +.
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELV-QILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHH-HHHHTSCTTCCEEECCSSC-GG
T ss_pred HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHH-HHHhccCCCccEEECcCCc-CC
Confidence 3334557777777763 332200 0002334566 6777777777 45544443332 33 667777777665 44
Q ss_pred eEeccCCCCCCCcccccC-CCccEEeeccCCCccccccCcccCCCCCceEEEEccCCc-cccccEEEeeccCcccccccc
Q 036454 88 EIVANDGRGNDAATKFIF-PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDV-FANLEELTLSKCIFTTWRQAQ 165 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-l~~L~~L~i~~~~~~~~~~~~ 165 (410)
..+.... ...+..+ ++|+.|+++++ .+.......+...+ .. .++|++|++++|.+......
T Consensus 94 ~~~~~~l----~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l-----------~~~~~~L~~L~Ls~N~l~~~~~~- 156 (362)
T 3goz_A 94 YKSSDEL----VKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAF-----------SNLPASITSLNLRGNDLGIKSSD- 156 (362)
T ss_dssp GSCHHHH----HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH-----------TTSCTTCCEEECTTSCGGGSCHH-
T ss_pred hHHHHHH----HHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHH-----------HhCCCceeEEEccCCcCCHHHHH-
Confidence 3322000 0012233 56777777666 33333221111000 00 02444444444443311110
Q ss_pred cccccEEEEEeCCCccchhhhhhhcc-cCceEEEeccccccccccchhhcccccc-CcccEEEeCCcccccccccCCCC-
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIH-NLEKLVLSTCEYKKIFSCEEVEEHAEGI-AQIKSLKLKKLWLIEEHLWNPDS- 242 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~- 242 (410)
.+ ...+..++ +|+.|++++|.+........ ......+ ++|++|+++++.-. ..+.
T Consensus 157 ---------------~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~i~-----~~~~~ 214 (362)
T 3goz_A 157 ---------------EL-IQILAAIPANVNSLNLRGNNLASKNCAEL-AKFLASIPASVTSLDLSANLLG-----LKSYA 214 (362)
T ss_dssp ---------------HH-HHHHHTSCTTCCEEECTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSCGG-----GSCHH
T ss_pred ---------------HH-HHHHhcCCccccEeeecCCCCchhhHHHH-HHHHHhCCCCCCEEECCCCCCC-----hhHHH
Confidence 11 12233443 67777777666544322000 0112223 36777777763221 1111
Q ss_pred ---ccccc-cccceEEEEeccccccccc-----ccCccccCccCEEEEcccCCcccccch------hhhhcCCCccEEEe
Q 036454 243 ---KLDSF-LQNLEFLEVKKCALSLISL-----VPSSASFRNLTVLKVCNCWQLISLVTP------QTAKTLVQLRELRV 307 (410)
Q Consensus 243 ---~~~~~-~~~L~~L~l~~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~l~~L~~L~l 307 (410)
..+.. .++|++|++++|. +++. ......+++|++|++++|. +..+... .....+++|++|++
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNC--LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSC--CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHhcCCCCceEEECcCCC--CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEec
Confidence 11222 3577777777773 3332 2223556778888887763 2222110 12245667778888
Q ss_pred ccCc
Q 036454 308 SECN 311 (410)
Q Consensus 308 ~~c~ 311 (410)
+++.
T Consensus 292 ~~N~ 295 (362)
T 3goz_A 292 NGKE 295 (362)
T ss_dssp TSCB
T ss_pred CCCc
Confidence 7753
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=2.1e-12 Score=117.31 Aligned_cols=188 Identities=19% Similarity=0.187 Sum_probs=105.8
Q ss_pred hhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccE
Q 036454 71 SLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEE 150 (410)
Q Consensus 71 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~ 150 (410)
.+..+..+.+.+.. +..+. ....+++|+.|+++++ .+..++. + ..+ ++|+.
T Consensus 22 ~l~~~~~~~l~~~~-~~~~~----------~~~~l~~L~~L~l~~~-~i~~~~~--~-~~l--------------~~L~~ 72 (291)
T 1h6t_A 22 AFAETIKDNLKKKS-VTDAV----------TQNELNSIDQIIANNS-DIKSVQG--I-QYL--------------PNVTK 72 (291)
T ss_dssp HHHHHHHHHTTCSC-TTSEE----------CHHHHHTCCEEECTTS-CCCCCTT--G-GGC--------------TTCCE
T ss_pred HHHHHHHHHhcCCC-ccccc----------chhhcCcccEEEccCC-CcccChh--H-hcC--------------CCCCE
Confidence 34445555555443 44433 4456888999999887 4554422 1 122 55666
Q ss_pred EEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454 151 LTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 151 L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (410)
|++++|.+....+.. +++|+.|++..+.+...+ .+..+++|+.|++++|.+..+.. +..+++|+.|++++
T Consensus 73 L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~~~-------l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDING-------LVHLPQLESLYLGN 143 (291)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCS
T ss_pred EEccCCccCCCcccccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCChh-------hcCCCCCCEEEccC
Confidence 666666655444322 666777777555555443 25666677777777666555422 44566666666666
Q ss_pred cccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454 230 LWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE 309 (410)
Q Consensus 230 c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 309 (410)
+ .+. ....+..+++|++|++++| .++.+++ +..+++|++|+++++ .+..++ ....+++|+.|++++
T Consensus 144 n-----~l~--~~~~l~~l~~L~~L~L~~N--~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 144 N-----KIT--DITVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS 209 (291)
T ss_dssp S-----CCC--CCGGGGGCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEEE
T ss_pred C-----cCC--cchhhccCCCCCEEEccCC--ccccchh-hcCCCccCEEECCCC-cCCCCh---hhccCCCCCEEECcC
Confidence 3 221 1134556666666666666 3444444 555666666666555 354443 245566666666665
Q ss_pred C
Q 036454 310 C 310 (410)
Q Consensus 310 c 310 (410)
+
T Consensus 210 n 210 (291)
T 1h6t_A 210 Q 210 (291)
T ss_dssp E
T ss_pred C
Confidence 4
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.8e-12 Score=113.94 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=105.2
Q ss_pred cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454 19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND 98 (410)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 98 (410)
.+.+.+++.+. .++.+ |.++ .+++++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 14 ~~~~~l~~~~~-~l~~~----p~~~--~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------- 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSV----PSGI--PADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYNQ-LQTLSA------- 76 (251)
T ss_dssp GGGTEEECTTC-CCSSC----CSCC--CTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCT-------
T ss_pred CCCeEEecCCC-Ccccc----CCCC--CCCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCCc-CCccCH-------
Confidence 34556666665 33333 4432 257777777777 4444544333 567777777777765 555443
Q ss_pred CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEE
Q 036454 99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFI 175 (410)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~ 175 (410)
..+..+++|+.|+++++ .+..++...+. .+ ++|++|++++|.+..+++.. +++|+.|++.
T Consensus 77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 77 -GVFDDLTELGTLGLANN-QLASLPLGVFD-HL--------------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred -hHhccCCcCCEEECCCC-cccccChhHhc-cc--------------CCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 13456677777777776 44444433221 22 45555555555555544432 6677777776
Q ss_pred eCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454 176 SDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 176 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (410)
.+.+..++...+..+++|+.|++++|.+..+.. ..+..+++|+.|++++
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-----GAFDRLGKLQTITLFG 188 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeC
Confidence 666666666667788888888888888776643 2355678888888887
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.2e-12 Score=130.56 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=41.3
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
.+.++..+.+... .+.++.+. ..+++|++|+++++. +..++ .+..+++|+.|+|+++ .+..++
T Consensus 19 ~l~~l~~l~l~~~-~i~~~~~~---~~L~~L~~L~l~~n~-i~~l~----------~l~~l~~L~~L~Ls~N-~l~~~~ 81 (605)
T 1m9s_A 19 AFAETIKDNLKKK-SVTDAVTQ---NELNSIDQIIANNSD-IKSVQ----------GIQYLPNVTKLFLNGN-KLTDIK 81 (605)
T ss_dssp HHHHHHHHHTTCS-CTTSEECH---HHHTTCCCCBCTTCC-CCCCT----------TGGGCTTCCEEECTTS-CCCCCG
T ss_pred HHHHHHHHhccCC-Ccccccch---hcCCCCCEEECcCCC-CCCCh----------HHccCCCCCEEEeeCC-CCCCCh
Confidence 4555666666555 34444343 678888888888876 66553 4667788888888887 444443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2e-12 Score=128.93 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=101.3
Q ss_pred cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454 13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN 92 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 92 (410)
.....+++|+.|+++++. +..+ +.+..+++|++|++++| .+..+++. .++++|++|+++++. +..++
T Consensus 37 ~~~~~L~~L~~L~l~~n~-i~~l-----~~l~~l~~L~~L~Ls~N-~l~~~~~l---~~l~~L~~L~Ls~N~-l~~l~-- 103 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSD-IKSV-----QGIQYLPNVTKLFLNGN-KLTDIKPL---TNLKNLGWLFLDENK-IKDLS-- 103 (605)
T ss_dssp ECHHHHTTCCCCBCTTCC-CCCC-----TTGGGCTTCCEEECTTS-CCCCCGGG---GGCTTCCEEECCSSC-CCCCT--
T ss_pred cchhcCCCCCEEECcCCC-CCCC-----hHHccCCCCCEEEeeCC-CCCCChhh---ccCCCCCEEECcCCC-CCCCh--
Confidence 346678888888888774 3332 35678888888888888 55555552 688888888888875 65543
Q ss_pred CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-cccccE
Q 036454 93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-FHKLKI 171 (410)
Q Consensus 93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~ 171 (410)
.+..+++|+.|+++++ .+..++. + ..+++ |+.|++++|.+..+.... +++|+.
T Consensus 104 --------~l~~l~~L~~L~Ls~N-~l~~l~~--l-~~l~~--------------L~~L~Ls~N~l~~l~~l~~l~~L~~ 157 (605)
T 1m9s_A 104 --------SLKDLKKLKSLSLEHN-GISDING--L-VHLPQ--------------LESLYLGNNKITDITVLSRLTKLDT 157 (605)
T ss_dssp --------TSTTCTTCCEEECTTS-CCCCCGG--G-GGCTT--------------CSEEECCSSCCCCCGGGGSCTTCSE
T ss_pred --------hhccCCCCCEEEecCC-CCCCCcc--c-cCCCc--------------cCEEECCCCccCCchhhcccCCCCE
Confidence 5567788888888887 4444321 1 13344 444444444444332222 555666
Q ss_pred EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCc
Q 036454 172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL 230 (410)
Q Consensus 172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 230 (410)
|+++.+.+...+. +..+++|+.|++++|.+..+.. +..+++|+.|+++++
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~-------l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-------LAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-------GTTCTTCSEEECCSE
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCChH-------HccCCCCCEEEccCC
Confidence 6654444444332 4556666666666665554422 445566666666653
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=3.5e-12 Score=108.91 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=91.6
Q ss_pred hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-c
Q 036454 188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-L 266 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-l 266 (410)
..+++|+.|+++++.+..+.. ...+++|++|+++++ .+ .. ...+..+++|++|++++|. ++. .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~-------l~~l~~L~~L~l~~n-~~-~~-----~~~l~~l~~L~~L~l~~n~--l~~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG-------IEYAHNIKDLTINNI-HA-TN-----YNPISGLSNLERLRIMGKD--VTSDK 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT-------GGGCTTCSEEEEESC-CC-SC-----CGGGTTCTTCCEEEEECTT--CBGGG
T ss_pred hhcCCccEEeccCCCccChHH-------HhcCCCCCEEEccCC-CC-Cc-----chhhhcCCCCCEEEeECCc--cCccc
Confidence 445666666666665554332 445566666666664 22 11 2245567777777777773 332 4
Q ss_pred ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454 267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF 346 (410)
Q Consensus 267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 346 (410)
+..+..+++|++|++++|. +..... .....+++|++|++++|..+++++ .+.. +++|+.|++++|. ++++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~-~l~~------l~~L~~L~l~~n~-i~~~ 174 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIM-PLKT------LPELKSLNIQFDG-VHDY 174 (197)
T ss_dssp SCCCTTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCG-GGGG------CSSCCEEECTTBC-CCCC
T ss_pred ChhhcCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccH-hhcC------CCCCCEEECCCCC-CcCh
Confidence 5556677777777777663 443211 345677778888887776566554 4455 7788888888753 5555
Q ss_pred cCCCcccCCCCccEEEEecCC
Q 036454 347 CSGNYAFSFPSLEDLIVENCP 367 (410)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~c~ 367 (410)
. ....+++|++|++.+++
T Consensus 175 ~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T---TGGGCSSCCEEEECBC-
T ss_pred H---HhccCCCCCEEEeeCcc
Confidence 4 23457888888887653
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.1e-11 Score=105.87 Aligned_cols=148 Identities=15% Similarity=0.222 Sum_probs=76.2
Q ss_pred ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454 218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK 297 (410)
Q Consensus 218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 297 (410)
.+++|++|+++++ .+.. ...+..+++|++|++++| .+..++ .+..+++|++|+++++ .+..... ..+.
T Consensus 42 ~l~~L~~L~l~~n-----~i~~--l~~l~~l~~L~~L~l~~n--~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~l~ 109 (197)
T 4ezg_A 42 QMNSLTYITLANI-----NVTD--LTGIEYAHNIKDLTINNI--HATNYN-PISGLSNLERLRIMGK-DVTSDKI-PNLS 109 (197)
T ss_dssp HHHTCCEEEEESS-----CCSC--CTTGGGCTTCSEEEEESC--CCSCCG-GGTTCTTCCEEEEECT-TCBGGGS-CCCT
T ss_pred hcCCccEEeccCC-----CccC--hHHHhcCCCCCEEEccCC--CCCcch-hhhcCCCCCEEEeECC-ccCcccC-hhhc
Confidence 3456666666652 2211 113555666666666666 333332 3445666666666554 2333111 2234
Q ss_pred cCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCC
Q 036454 298 TLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVL 377 (410)
Q Consensus 298 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 377 (410)
.+++|++|++++|.-....+..++. +++|+.|++++|..+++++ ....+++|++|++++| .+..++ .+.
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~------l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~-~l~ 178 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINT------LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR-GIE 178 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTT------CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT-TGG
T ss_pred CCCCCCEEEecCCccCcHhHHHHhh------CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH-Hhc
Confidence 5566666666665333333444444 6666666666655455543 1234666666666655 344444 344
Q ss_pred CCCCcceeEec
Q 036454 378 KTPRLQAVQNW 388 (410)
Q Consensus 378 ~~~~L~~l~~~ 388 (410)
.+++|++|+++
T Consensus 179 ~l~~L~~L~l~ 189 (197)
T 4ezg_A 179 DFPKLNQLYAF 189 (197)
T ss_dssp GCSSCCEEEEC
T ss_pred cCCCCCEEEee
Confidence 56666666665
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=1.1e-11 Score=110.86 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=71.0
Q ss_pred cccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
..+++|++|++++| .+..++.. ..+++|++|+++++. +..++ .+..+++|+.|+++++ .++.++
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~~l---~~l~~L~~L~L~~N~-i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~ 101 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLAGM---QFFTNLKELHLSHNQ-ISDLS----------PLKDLTKLEELSVNRN-RLKNLN 101 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCTTG---GGCTTCCEEECCSSC-CCCCG----------GGTTCSSCCEEECCSS-CCSCCT
T ss_pred hhcCcCcEEECcCC-CcccchHH---hhCCCCCEEECCCCc-cCCCh----------hhccCCCCCEEECCCC-ccCCcC
Confidence 35555556665555 34444321 455556666655553 44333 2344555555555555 333332
Q ss_pred cCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc
Q 036454 124 SGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE 202 (410)
Q Consensus 124 ~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 202 (410)
... . ++ |+.|++++|.+....... +++|+.|+++.+.+...+ .+..+++|+.|++++|.
T Consensus 102 ~~~---~-~~--------------L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 102 GIP---S-AC--------------LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp TCC---C-SS--------------CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred ccc---c-Cc--------------ccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence 211 0 22 333333333333322211 455555555444444443 35667777777777776
Q ss_pred cccccccchhhccccccCcccEEEeCC
Q 036454 203 YKKIFSCEEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (410)
+..+. .+..+++|+.|++++
T Consensus 162 i~~~~-------~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 162 ITNTG-------GLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCBCT-------TSTTCCCCCEEEEEE
T ss_pred CcchH-------HhccCCCCCEEeCCC
Confidence 66552 255667777777776
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=3.2e-11 Score=107.78 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=30.8
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL 116 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 116 (410)
.+.++..+++.++ .+.+++.. ..+++|++|+++++. +..++ .+..+++|+.|+++++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~~~---~~l~~L~~L~l~~n~-i~~l~----------~l~~l~~L~~L~L~~N 73 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLVSQ---KELSGVQNFNGDNSN-IQSLA----------GMQFFTNLKELHLSHN 73 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEECH---HHHTTCSEEECTTSC-CCCCT----------TGGGCTTCCEEECCSS
T ss_pred HHHHHHHHHhcCC-Ccccccch---hhcCcCcEEECcCCC-cccch----------HHhhCCCCCEEECCCC
Confidence 4555555555555 34444322 466666666666654 44433 3445566666666655
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=1.9e-10 Score=113.61 Aligned_cols=122 Identities=13% Similarity=0.074 Sum_probs=69.6
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+|+.|+++.+.+..+|. .+++|+.|++++|.+..+.. .+++|+.|+++++. + ..+ +. +.
T Consensus 121 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~N~-L-~~l----p~-l~- 179 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE---------LPTSLEVLSVRNNQ-L-TFL----PE-LP- 179 (571)
T ss_dssp TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSC-C-SCC----CC-CC-
T ss_pred CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC---------cCCCcCEEECCCCC-C-CCc----ch-hh-
Confidence 55555554444444443 45677777777776655321 45677777777732 2 112 11 22
Q ss_pred cccceEEEEecccccccccccCccccCcc-------CEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc
Q 036454 248 LQNLEFLEVKKCALSLISLVPSSASFRNL-------TVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN 319 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 319 (410)
++|+.|++++| .++.+|. +.. +| ++|+++++ .++.++. .+..+++|+.|+++++.-...++..
T Consensus 180 -~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 180 -ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPE--NILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCSS-CCCCCCG--GGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCCC-cceecCH--HHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 67777777777 4556655 222 56 77777665 4666653 3445777888888776544444443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.4e-10 Score=101.30 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=64.2
Q ss_pred hhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccc
Q 036454 185 GLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLI 264 (410)
Q Consensus 185 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~ 264 (410)
..+.++++|+.|++++|.+..+.. ..+..+++|+.|++++ +.+.......+..+++|++|++++| .++
T Consensus 58 ~~~~~l~~L~~L~L~~N~l~~i~~-----~~~~~l~~L~~L~Ls~-----N~l~~l~~~~~~~l~~L~~L~Ls~N--~l~ 125 (229)
T 3e6j_A 58 GVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQLTVLDLGT-----NQLTVLPSAVFDRLVHLKELFMCCN--KLT 125 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCC
T ss_pred HHhhCccCCcEEECCCCCCCCcCh-----hhcccCCCcCEEECCC-----CcCCccChhHhCcchhhCeEeccCC--ccc
Confidence 345566677777777666655432 1234566666666666 2222222233456667777777776 455
Q ss_pred ccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 265 SLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 265 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
.++..+..+++|++|+++++ .+..++. .....+++|+.|++.++
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCC
Confidence 66666666677777777655 4555543 23455666677766653
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.1e-10 Score=100.46 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=54.2
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+|+.|++....+...+...+..+++|+.|+++++.+..+.. ..+..+++|++|+++++ .+.......+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~ 98 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----GVFNKLTSLTYLNLSTN-----QLQSLPNGVFDK 98 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----hhcCCCCCcCEEECCCC-----cCCccCHhHhcC
Confidence 33334333333333333334555555566555555444322 11234455555555542 221111122344
Q ss_pred cccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 248 LQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
+++|++|++++| .++.+++. +..+++|++|+++++ .+..++. .....+++|++|+++++
T Consensus 99 l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 99 LTQLKELALNTN--QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred ccCCCEEEcCCC--cCcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence 455555555555 33333322 234455555555443 2333321 12234444555555443
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=4.8e-11 Score=102.64 Aligned_cols=134 Identities=17% Similarity=0.125 Sum_probs=84.0
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+|++|++....+..++...+..+++|+.|++++|.+..+.. ..+..+++|++|++++ +.+.......+..
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~-----N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-----GVFDKLTQLKELALNT-----NQLQSLPDGVFDK 122 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTT
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-----hHhcCccCCCEEEcCC-----CcCcccCHhHhcc
Confidence 33333333333334444445677888888888887765543 1245678888888887 3332222334567
Q ss_pred cccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCC
Q 036454 248 LQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGD 322 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 322 (410)
+++|++|++++| .++.++.. +..+++|++|++++++ + ...+++|+.|+++.+.....++..++.
T Consensus 123 l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~-~--------~~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 123 LTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNP-W--------DCTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC-B--------CCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCcCCEEECCCC--ccceeCHHHhccCCCccEEEecCCC-e--------ecCCCCHHHHHHHHHhCCceeeccCcc
Confidence 888899999888 46565553 5678889999998763 1 145667888877775544566655444
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.15 E-value=2.4e-10 Score=112.77 Aligned_cols=182 Identities=18% Similarity=0.124 Sum_probs=112.8
Q ss_pred CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454 20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA 99 (410)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 99 (410)
+|+.|+++++ .++.+ |..+ +++|++|++++| .+..++ +.+++|++|+++++. +..+|.
T Consensus 60 ~L~~L~Ls~n-~L~~l----p~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~-------- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL----PDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE-------- 117 (571)
T ss_dssp TCSEEECCSS-CCSCC----CSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC--------
T ss_pred CccEEEeCCC-CCCcc----CHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch--------
Confidence 7788888776 34433 5443 477888888877 455554 246788888888775 655542
Q ss_pred cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCC
Q 036454 100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGS 179 (410)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~ 179 (410)
+. .+|+.|+++++ .++.++. .+ ++|+.|++++|.+..++. .+++|+.|+++.+.+
T Consensus 118 --l~--~~L~~L~Ls~N-~l~~lp~-----~l--------------~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 118 --LP--ASLKHLDVDNN-QLTMLPE-----LP--------------ALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL 172 (571)
T ss_dssp --CC--TTCCEEECCSS-CCSCCCC-----CC--------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred --hh--cCCCEEECCCC-cCCCCCC-----cC--------------ccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC
Confidence 11 27888888876 4444332 12 566666666666665444 467888888866666
Q ss_pred ccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc
Q 036454 180 DFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC 259 (410)
Q Consensus 180 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (410)
..+|. +. ++|+.|++++|.+..+.. .........+.|+.|+++++ .+... +..+..+++|+.|++++|
T Consensus 173 ~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-----~l~~l-p~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 173 TFLPE--LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCREN-----RITHI-PENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCCC--CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSS-----CCCCC-CGGGGGSCTTEEEECCSS
T ss_pred CCcch--hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCC-----cceec-CHHHhcCCCCCEEEeeCC
Confidence 66664 33 889999999988775533 11000111123399999883 33211 334555899999999998
Q ss_pred c
Q 036454 260 A 260 (410)
Q Consensus 260 ~ 260 (410)
.
T Consensus 241 ~ 241 (571)
T 3cvr_A 241 P 241 (571)
T ss_dssp S
T ss_pred c
Confidence 5
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.3e-12 Score=129.37 Aligned_cols=212 Identities=15% Similarity=0.102 Sum_probs=120.5
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc----CCCCCCCcccccCCCccEEe-eccCCCc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN----DGRGNDAATKFIFPSLTFLR-LRDLPDL 119 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~~~~l~~L~~L~-l~~~~~l 119 (410)
..++|+.|+++++ .++.+ |..+ +++++|++|+++++..+...+.. ...+.....+..+++|+.|+ ++.. .+
T Consensus 347 ~~~~L~~L~Ls~n-~L~~L-p~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~ 422 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVL-QSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL 422 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHH-HHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH
T ss_pred cCccceeccCChh-hHHhh-HHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc
Confidence 5678888888877 45555 3334 67888888887654311111100 00000001333444455444 2221 11
Q ss_pred cccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEe
Q 036454 120 TTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLS 199 (410)
Q Consensus 120 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 199 (410)
..|+.+.+.+|.+..++ ...|+.|+++.+.+..+|. +.++++|+.|+++
T Consensus 423 --------------------------~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls 471 (567)
T 1dce_A 423 --------------------------DDLRSKFLLENSVLKME---YADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLS 471 (567)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSSCCC--GGGGTTCCEEECC
T ss_pred --------------------------chhhhhhhhcccccccC---ccCceEEEecCCCCCCCcC--ccccccCcEeecC
Confidence 22223333333222222 1235555554444445552 6777888888888
Q ss_pred ccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc--ccCccccCccC
Q 036454 200 TCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL--VPSSASFRNLT 277 (410)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l--~~~~~~~~~L~ 277 (410)
+|.+..++. .+..+++|+.|++++ +.+.. ...+..+++|++|++++| .++.+ |..++.+++|+
T Consensus 472 ~N~l~~lp~------~~~~l~~L~~L~Ls~-----N~l~~--lp~l~~l~~L~~L~Ls~N--~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 472 HNRLRALPP------ALAALRCLEVLQASD-----NALEN--VDGVANLPRLQELLLCNN--RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp SSCCCCCCG------GGGGCTTCCEEECCS-----SCCCC--CGGGTTCSSCCEEECCSS--CCCSSSTTGGGGGCTTCC
T ss_pred cccccccch------hhhcCCCCCEEECCC-----CCCCC--CcccCCCCCCcEEECCCC--CCCCCCCcHHHhcCCCCC
Confidence 887776544 466778888888887 33321 125677888888888888 56666 66778888888
Q ss_pred EEEEcccCCcccccch--hhhhcCCCccEEEe
Q 036454 278 VLKVCNCWQLISLVTP--QTAKTLVQLRELRV 307 (410)
Q Consensus 278 ~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l 307 (410)
.|++++++ +...+.. .....+|+|+.|++
T Consensus 537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 88887763 5555431 23456888888753
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=3.9e-10 Score=97.83 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=46.1
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS 265 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 265 (410)
.+..+++|+.|++++|.+..+.+ ..+.++++|++|++++ +.+.......+..+++|++|++++| .++.
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~l~~~~f~~l~~L~~L~L~~N--~l~~ 118 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAP-----DAFQGLRSLNSLVLYG-----NKITELPKSLFEGLFSLQLLLLNAN--KINC 118 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECT-----TTTTTCSSCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCCC
T ss_pred HhhCCCCCCEEECCCCcCCCcCH-----HHhhCCcCCCEEECCC-----CcCCccCHhHccCCCCCCEEECCCC--CCCE
Confidence 34445555555555555444322 1234445555555554 2221111222344455555555555 2333
Q ss_pred cc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454 266 LV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE 309 (410)
Q Consensus 266 l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 309 (410)
++ ..+..+++|++|+++++ .++.++. .....+++|++|++.+
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCS
T ss_pred eCHHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCC
Confidence 22 22334445555555443 2333321 1223344455555444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=3e-10 Score=106.43 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=62.9
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM 126 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 126 (410)
+.+++|+++++ .+..+++..+..++++|++|+++++. +..++. ..+..+++|+.|+++++ .+..++...
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS--------EAFVPVPNLRYLDLSSN-HLHTLDEFL 107 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccCh--------hhccCCCCCCEEECCCC-cCCcCCHHH
Confidence 34666666666 44444443221156666666666654 555543 13445566666666665 344444332
Q ss_pred ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhh---hhcccCceEEEec
Q 036454 127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLL---QNIHNLEKLVLST 200 (410)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~ 200 (410)
+. .+++| +.|++++|.+..+.+.. +++|+.|++..+.+..++...+ ..+++|+.|++++
T Consensus 108 ~~-~l~~L--------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 108 FS-DLQAL--------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TT-TCTTC--------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred hC-CCcCC--------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 22 23333 33333333333332221 4445555554444444443333 3455566666665
Q ss_pred cccccc
Q 036454 201 CEYKKI 206 (410)
Q Consensus 201 ~~~~~~ 206 (410)
|.+..+
T Consensus 173 N~l~~l 178 (361)
T 2xot_A 173 NKLKKL 178 (361)
T ss_dssp SCCCCC
T ss_pred CCCCcc
Confidence 555443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=4.7e-13 Score=132.66 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=95.1
Q ss_pred ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCc
Q 036454 191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSS 270 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~ 270 (410)
..|+.|++++|.+..++. +..+++|+.|+++++ .+. .-+..+..+++|+.|++++| .++.+| .+
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-------~~~l~~L~~L~Ls~N-----~l~-~lp~~~~~l~~L~~L~Ls~N--~l~~lp-~l 504 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-------LEQLLLVTHLDLSHN-----RLR-ALPPALAALRCLEVLQASDN--ALENVD-GV 504 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-------GGGGTTCCEEECCSS-----CCC-CCCGGGGGCTTCCEEECCSS--CCCCCG-GG
T ss_pred cCceEEEecCCCCCCCcC-------ccccccCcEeecCcc-----ccc-ccchhhhcCCCCCEEECCCC--CCCCCc-cc
Confidence 369999999998887643 678899999999983 332 12456889999999999999 677776 68
Q ss_pred cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeec
Q 036454 271 ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFL 337 (410)
Q Consensus 271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l 337 (410)
+.+++|++|+++++ .+..+.....+..+++|+.|+++++ .++..+..... ....+|+|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~--l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQER--LAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTH--HHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHH--HHHHCcccCccCC
Confidence 88999999999887 5777631246788999999999986 45444432221 1123788888854
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=5.4e-10 Score=96.96 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=49.1
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++|+.|+++++.+..+.. ..+.++++|++|++++ +.+.......+..+++|++|++++| .++.+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~ 120 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEE-----GAFEGASGVNEILLTS-----NRLENVQHKMFKGLESLKTLMLRSN--RITCV 120 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS-----SCCCCCCGGGGTTCSSCCEEECTTS--CCCCB
T ss_pred hccCCCCCEEECCCCcCCEECH-----HHhCCCCCCCEEECCC-----CccCccCHhHhcCCcCCCEEECCCC--cCCeE
Confidence 4455555555555555444432 1234445555555554 2221112223444555555555555 23333
Q ss_pred -ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454 267 -VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE 309 (410)
Q Consensus 267 -~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 309 (410)
+..+..+++|++|+++++ .++.+.+ ..+..+++|++|++++
T Consensus 121 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCS
T ss_pred CHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecC
Confidence 233344555555555443 2333321 2234445555555544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=1.1e-09 Score=95.06 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=54.8
Q ss_pred hhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccc
Q 036454 185 GLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLI 264 (410)
Q Consensus 185 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~ 264 (410)
..+.++++|+.|++++|.+..+.. ..+.++++|+.|++++ +.+.......+..+++|++|++++| .++
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~-----~~f~~l~~L~~L~L~~-----N~l~~~~~~~~~~l~~L~~L~L~~N--~l~ 141 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPK-----SLFEGLFSLQLLLLNA-----NKINCLRVDAFQDLHNLNLLSLYDN--KLQ 141 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCS
T ss_pred HHhhCCcCCCEEECCCCcCCccCH-----hHccCCCCCCEEECCC-----CCCCEeCHHHcCCCCCCCEEECCCC--cCC
Confidence 345666777777777776665543 1245567777777776 3332223345666777777777777 455
Q ss_pred cccc-CccccCccCEEEEcccC
Q 036454 265 SLVP-SSASFRNLTVLKVCNCW 285 (410)
Q Consensus 265 ~l~~-~~~~~~~L~~L~l~~c~ 285 (410)
.+++ .+..+++|++|++++++
T Consensus 142 ~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 142 TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECHHHHhCCCCCCEEEeCCCC
Confidence 5543 35567777777777653
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=9.8e-10 Score=95.28 Aligned_cols=108 Identities=11% Similarity=0.215 Sum_probs=63.3
Q ss_pred cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD 245 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 245 (410)
+++|+.|++..+.+..++...+.++++|+.|++++|.+..+.. ..+.++++|++|++++ +.+.......+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~ 125 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-----KMFKGLESLKTLMLRS-----NRITCVGNDSF 125 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-----GGGTTCSSCCEEECTT-----SCCCCBCTTSS
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-----hHhcCCcCCCEEECCC-----CcCCeECHhHc
Confidence 3334444443333334444455667777777777776655533 2345667777777776 33322223445
Q ss_pred cccccceEEEEeccccccccc-ccCccccCccCEEEEcccC
Q 036454 246 SFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCNCW 285 (410)
Q Consensus 246 ~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~c~ 285 (410)
..+++|++|++++| .++.+ +..+..+++|++|++++++
T Consensus 126 ~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 126 IGLSSVRLLSLYDN--QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCSEEECTTS--CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCCEEECCCC--cCCEECHHHhcCCCCCCEEEecCcC
Confidence 66777888888777 45554 4455667778888877653
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.03 E-value=5.9e-10 Score=104.38 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=116.3
Q ss_pred ccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccccc----ccccccEEEEEeCCCccch
Q 036454 108 LTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQA----QFHKLKILHFISDGSDFFQ 183 (410)
Q Consensus 108 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~ 183 (410)
-+.+++++. .++.+|... + +.++.|++++|.+..+.+. .+++|+.|++..+.+..++
T Consensus 20 ~~~l~c~~~-~l~~iP~~~-----~-------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 20 SNILSCSKQ-QLPNVPQSL-----P-------------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80 (361)
T ss_dssp TTEEECCSS-CCSSCCSSC-----C-------------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC
T ss_pred CCEEEeCCC-CcCccCccC-----C-------------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC
Confidence 366666665 555554432 1 3466777777776665543 3678899999777777777
Q ss_pred hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc
Q 036454 184 VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL 263 (410)
Q Consensus 184 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l 263 (410)
...+.++++|+.|++++|.+..+.. ..+.++++|+.|+++++ .+.......+..+++|+.|++++| .+
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~L~~N--~l 148 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSNHLHTLDE-----FLFSDLQALEVLLLYNN-----HIVVVDRNAFEDMAQLQKLYLSQN--QI 148 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSS--CC
T ss_pred hhhccCCCCCCEEECCCCcCCcCCH-----HHhCCCcCCCEEECCCC-----cccEECHHHhCCcccCCEEECCCC--cC
Confidence 7777888999999999888776644 23567889999999883 332222345677889999999988 56
Q ss_pred cccccCc----cccCccCEEEEcccCCcccccchhhhhcCCC--ccEEEeccC
Q 036454 264 ISLVPSS----ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQ--LRELRVSEC 310 (410)
Q Consensus 264 ~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c 310 (410)
+.++... ..+++|++|+++++ .+..++. ..+..++. ++.|++.++
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL-TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCSS-CCCCCCH-HHHHHSCHHHHTTEECCSS
T ss_pred CeeCHHHhcCcccCCcCCEEECCCC-CCCccCH-HHhhhccHhhcceEEecCC
Confidence 6666543 45788999999776 5766653 34456665 477888774
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=8e-10 Score=91.45 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=42.3
Q ss_pred ccccccceEEEEecccccccc-cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc----c
Q 036454 245 DSFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA----N 319 (410)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~----~ 319 (410)
+..+++|++|++++| .+.. ++.....+++|++|+++++ .+..++.......+++|++|++++| .+..++. .
T Consensus 67 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~ 142 (168)
T 2ell_A 67 LPKLPKLKKLELSEN--RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESV 142 (168)
T ss_dssp CCCCSSCCEEEEESC--CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHH
T ss_pred hccCCCCCEEECcCC--cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHH
Confidence 444555555555555 2333 3333334555666666554 3444432223455566666666554 2333322 3
Q ss_pred cCCCCccccccccceeecCcCc
Q 036454 320 DGDADDEIVFSKLKWLFLESSE 341 (410)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~c~ 341 (410)
+.. +++|+.|++++|.
T Consensus 143 ~~~------l~~L~~L~l~~n~ 158 (168)
T 2ell_A 143 FKL------LPQLTYLDGYDRE 158 (168)
T ss_dssp HTT------CSSCCEETTEETT
T ss_pred HHh------CccCcEecCCCCC
Confidence 333 5666666666653
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=1.6e-09 Score=94.59 Aligned_cols=60 Identities=12% Similarity=-0.031 Sum_probs=32.2
Q ss_pred ccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 49 LVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 49 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
-..++.++. .+..+|.. -.++|++|+++++. +..++. ..+..+++|+.|+++++ .+..++
T Consensus 21 ~~~v~c~~~-~l~~ip~~----~~~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~ 80 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG----IPTNAQILYLHDNQ-ITKLEP--------GVFDSLINLKELYLGSN-QLGALP 80 (229)
T ss_dssp TTEEECTTS-CCSSCCSC----CCTTCSEEECCSSC-CCCCCT--------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCEeEccCC-CcCccCCC----CCCCCCEEEcCCCc-cCccCH--------HHhhCccCCcEEECCCC-CCCCcC
Confidence 345665554 44555432 23667777777665 554432 13455666677766665 344443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=8.1e-10 Score=91.43 Aligned_cols=139 Identities=22% Similarity=0.200 Sum_probs=94.2
Q ss_pred cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhc
Q 036454 219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKT 298 (410)
Q Consensus 219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 298 (410)
.++|++|+++++...+..+ +..+..+++|++|++++| .++.+ ..+..+++|++|+++++. +....+ .....
T Consensus 23 ~~~L~~L~l~~n~l~~~~i----~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI----EGLTAEFVNLEFLSLINV--GLISV-SNLPKLPKLKKLELSENR-IFGGLD-MLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC----SSCCGGGGGCCEEEEESS--CCCCC-SSCCCCSSCCEEEEESCC-CCSCCC-HHHHH
T ss_pred cccCCEEECCCCCCChhhH----HHHHHhCCCCCEEeCcCC--CCCCh-hhhccCCCCCEEECcCCc-CchHHH-HHHhh
Confidence 3667777777743110022 233577888999999988 46655 667788999999998874 555221 45567
Q ss_pred CCCccEEEeccCcccchhc--cccCCCCccccccccceeecCcCcccceecC--CCcccCCCCccEEEEecCCCCcccCC
Q 036454 299 LVQLRELRVSECNRLEEIV--ANDGDADDEIVFSKLKWLFLESSESITSFCS--GNYAFSFPSLEDLIVENCPKLNTFSA 374 (410)
Q Consensus 299 l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~ 374 (410)
+++|++|++++| .++.++ ..+.. +++|+.|++++++ ++.++. ...+..+++|++|++.+|. +..+|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~------l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKK------LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSS------CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhc------CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 899999999986 555554 45566 8999999999864 555543 1134568999999998884 444554
Q ss_pred C
Q 036454 375 G 375 (410)
Q Consensus 375 ~ 375 (410)
.
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=6.2e-09 Score=96.07 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=47.7
Q ss_pred cCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc-cCCCCccccccccc-eeecCcCcccceecCCC
Q 036454 273 FRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLK-WLFLESSESITSFCSGN 350 (410)
Q Consensus 273 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~ 350 (410)
+++|+++++.++ +++.++. .....+++|+++++.+. ++.+... +.+ +++|+ .+.+.+ .++.+...
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~aF~~------~~~L~~~l~l~~--~l~~I~~~- 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQRVFSN------CGRLAGTLELPA--SVTAIEFG- 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTT------CTTCCEEEEECT--TCCEECTT-
T ss_pred cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehHHHhhC------ChhccEEEEEcc--cceEEchh-
Confidence 455666666543 2444432 23455556666666542 3333221 222 45555 555554 45555443
Q ss_pred cccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeE
Q 036454 351 YAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQ 386 (410)
Q Consensus 351 ~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~ 386 (410)
.+.+|++|+.+++.. .+++.++.+ +..+++|+.|+
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 244556666665533 244444432 23455555554
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=7.5e-10 Score=89.67 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=7.2
Q ss_pred ccCceEEEeccccc
Q 036454 191 HNLEKLVLSTCEYK 204 (410)
Q Consensus 191 ~~L~~L~l~~~~~~ 204 (410)
++|+.|++++|.+.
T Consensus 17 ~~l~~L~l~~n~l~ 30 (149)
T 2je0_A 17 SDVKELVLDNSRSN 30 (149)
T ss_dssp GGCSEEECTTCBCB
T ss_pred ccCeEEEccCCcCC
Confidence 45555555555443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=4.5e-09 Score=97.05 Aligned_cols=183 Identities=10% Similarity=0.005 Sum_probs=117.3
Q ss_pred hhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEcc----------
Q 036454 72 LLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNH---------- 141 (410)
Q Consensus 72 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~---------- 141 (410)
+++|++|++.. +++.++.. .+..+++|+.++++++ .+..++...+. .+.++..+....
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~--------aF~~~~~L~~l~l~~n-~i~~i~~~aF~-~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDA--------AFKGCDNLKICQIRKK-TAPNLLPEALA-DSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTT--------TTTTCTTCCEEEBCCS-SCCEECTTSSC-TTTCEEEECTTCTHHHHTSTTT
T ss_pred cCCCcEEECCc--cccchhHH--------HhhcCcccceEEcCCC-Cccccchhhhc-CCCceEEecCcchhhhhccccc
Confidence 78888888876 37777652 4556788888888766 34444444433 233444443222
Q ss_pred -------C-----------------------CccccccEEEeeccCccccccc---ccccccEEEEEeCCCccchhhhhh
Q 036454 142 -------V-----------------------DVFANLEELTLSKCIFTTWRQA---QFHKLKILHFISDGSDFFQVGLLQ 188 (410)
Q Consensus 142 -------~-----------------------~~l~~L~~L~i~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~l~ 188 (410)
| ....++..+.+.+.-....... .+++|+.+++....+..++...+.
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 1 0112233333333211111110 167899999976678888888899
Q ss_pred hcccCceEEEeccccccccccchhhccccccCccc-EEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454 189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK-SLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV 267 (410)
Q Consensus 189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~ 267 (410)
++++|+.+.+..+ +..+.. ..+.++++|+ .+.+.. ++ ..+ +...+..|++|+++++.++ .++.+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~--~l-~~I---~~~aF~~c~~L~~l~l~~n--~i~~I~ 313 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPA--SV-TAI---EFGAFMGCDNLRYVLATGD--KITTLG 313 (329)
T ss_dssp TCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECT--TC-CEE---CTTTTTTCTTEEEEEECSS--CCCEEC
T ss_pred CCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcc--cc-eEE---chhhhhCCccCCEEEeCCC--ccCccc
Confidence 9999999999986 555533 3578899999 999987 45 444 2346888999999999887 566666
Q ss_pred c-CccccCccCEEE
Q 036454 268 P-SSASFRNLTVLK 280 (410)
Q Consensus 268 ~-~~~~~~~L~~L~ 280 (410)
. .+..+++|+.+.
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 5 345677888765
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=1.6e-09 Score=87.71 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=65.0
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++|+.|++++|.+..+ . .+..+++|++|+++++. +....+.....+++|++|++++| .++.+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~ls~N--~i~~~ 103 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-A------NLPKLNKLKKLELSDNR-----VSGGLEVLAEKCPNLTHLNLSGN--KIKDL 103 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-T------TCCCCTTCCEEECCSSC-----CCSCTHHHHHHCTTCCEEECTTS--CCCSH
T ss_pred HhhcCCCcEEECcCCCCCCc-h------hhhcCCCCCEEECCCCc-----ccchHHHHhhhCCCCCEEECCCC--cCCCh
Confidence 46678888888888876655 2 35667777777777732 21111233445777777777777 44443
Q ss_pred c--cCccccCccCEEEEcccCCcccccc--hhhhhcCCCccEEEec
Q 036454 267 V--PSSASFRNLTVLKVCNCWQLISLVT--PQTAKTLVQLRELRVS 308 (410)
Q Consensus 267 ~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~ 308 (410)
+ ..+..+++|++|+++++ .+...+. ......+++|+.|+++
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 3 44566677777777666 3554432 1244666667766654
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=1.3e-08 Score=86.11 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=15.1
Q ss_pred CcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454 47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG 84 (410)
Q Consensus 47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 84 (410)
++|++|+++++ .+..++ .. +.++++|++|+++++.
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~-~~~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KE-LSNYKHLTLIDLSNNR 65 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GG-GGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCchhH-HH-hhcccCCCEEECCCCc
Confidence 34555555444 333332 11 2344555555555443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.84 E-value=4.4e-09 Score=87.74 Aligned_cols=14 Identities=14% Similarity=-0.019 Sum_probs=6.3
Q ss_pred ccCceEEEeccccc
Q 036454 191 HNLEKLVLSTCEYK 204 (410)
Q Consensus 191 ~~L~~L~l~~~~~~ 204 (410)
++|+.|++++|.+.
T Consensus 19 ~~L~~L~l~~n~l~ 32 (176)
T 1a9n_A 19 VRDRELDLRGYKIP 32 (176)
T ss_dssp TSCEEEECTTSCCC
T ss_pred CCceEEEeeCCCCc
Confidence 44444444444433
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.8e-08 Score=85.29 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred EEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCc
Q 036454 151 LTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL 230 (410)
Q Consensus 151 L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 230 (410)
++.+++.+..++....++|+.|++....+..++ ..+.++++|+.|+++++.+..+.. ..+.++++|++|++++
T Consensus 15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~- 87 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLLTLILSY- 87 (193)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-
T ss_pred EEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCCEEECCC-
Confidence 333444333333222334444444333444444 345667777777777776655533 1345566666666666
Q ss_pred ccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEccc
Q 036454 231 WLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNC 284 (410)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c 284 (410)
+.+.......+..+++|++|++++| .++.++.. +..+++|++|+++++
T Consensus 88 ----N~l~~i~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 ----NRLRCIPPRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp ----SCCCBCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ----CccCEeCHHHhCCCCCCCEEECCCC--CCCeeChhhhhcCccccEEEeCCC
Confidence 2332222334555666666666666 44444442 345566666666554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.80 E-value=3.1e-08 Score=83.77 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=16.4
Q ss_pred cccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454 44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG 84 (410)
Q Consensus 44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 84 (410)
..+++|++|+++++ .+..+.+..+ .++++|++|+++++.
T Consensus 51 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 51 GRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGENK 89 (192)
T ss_dssp GGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred ccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCCc
Confidence 34444444444444 2333322222 344444444444443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.79 E-value=8.4e-09 Score=86.00 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc--
Q 036454 191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-- 268 (410)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-- 268 (410)
++|+.|++++|.+..+ . .+..+++|++|+++++ .+.......+..+++|++|++++| .+.+++.
T Consensus 42 ~~L~~L~Ls~N~l~~~-~------~l~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~ 107 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL-D------GFPLLRRLKTLLVNNN-----RICRIGEGLDQALPDLTELILTNN--SLVELGDLD 107 (176)
T ss_dssp TCCSEEECCSSCCCEE-C------CCCCCSSCCEEECCSS-----CCCEECSCHHHHCTTCCEEECCSC--CCCCGGGGG
T ss_pred CCCCEEECCCCCCCcc-c------ccccCCCCCEEECCCC-----cccccCcchhhcCCCCCEEECCCC--cCCcchhhH
Confidence 4888888888877665 2 3566778888888773 221111223467788888888887 4565554
Q ss_pred CccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCc
Q 036454 269 SSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECN 311 (410)
Q Consensus 269 ~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~ 311 (410)
.+..+++|++|++++++ +..++.. .....+++|+.|+++++.
T Consensus 108 ~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 56677788888887764 5444321 135677788888777653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=2.6e-08 Score=83.00 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF 247 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 247 (410)
+|+.|++....+...+...+..+++|+.|+++++.+..+.. ..+..+++|++|++++ +.+.......+..
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~-----N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLTKLTILYLHE-----NKLQSLPNGVFDK 98 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTT
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----hHccCCCccCEEECCC-----CCccccCHHHhhC
Confidence 33333333333333333334555666666666555544332 1123445555555554 2221111222344
Q ss_pred cccceEEEEecccccccccccCc-cccCccCEEEEccc
Q 036454 248 LQNLEFLEVKKCALSLISLVPSS-ASFRNLTVLKVCNC 284 (410)
Q Consensus 248 ~~~L~~L~l~~~~~~l~~l~~~~-~~~~~L~~L~l~~c 284 (410)
+++|++|++++| .++.++... ..+++|++|+++++
T Consensus 99 l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 99 LTQLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccCEEECcCC--cceEeCHHHhcCCcccCEEEecCC
Confidence 455555555555 333333322 33445555555443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.75 E-value=2.5e-08 Score=84.40 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=48.2
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++|+.|+++++.+..+.+ ..+.++++|++|++++ +.+.......+..+++|++|++++| .++.+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~ 117 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLGE-----NKIKEISNKMFLGLHQLKTLNLYDN--QISCV 117 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCS-----CCCCEECSSSSTTCTTCCEEECCSS--CCCEE
T ss_pred cccCCCCCEEECCCCCCCCcCH-----hHcCCcccCCEEECCC-----CcCCccCHHHhcCCCCCCEEECCCC--cCCee
Confidence 4566777777777766655532 1345566666666666 2222112233455666777777766 34433
Q ss_pred -ccCccccCccCEEEEccc
Q 036454 267 -VPSSASFRNLTVLKVCNC 284 (410)
Q Consensus 267 -~~~~~~~~~L~~L~l~~c 284 (410)
+..+..+++|++|+++++
T Consensus 118 ~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CTTSSTTCTTCCEEECTTC
T ss_pred CHHHhhcCCCCCEEEeCCC
Confidence 334555666666666654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=6e-08 Score=80.79 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=44.6
Q ss_pred cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454 13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN 92 (410)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 92 (410)
.+.+.+++|+.|+++++. ++.+. +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 22 ~p~~~~~~l~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~- 93 (177)
T 2o6r_A 22 VPTGIPSSATRLELESNK-LQSLP---HGVFDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHENK-LQSLPN- 93 (177)
T ss_dssp CCTTCCTTCSEEECCSSC-CCCCC---TTTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-
T ss_pred CCCCCCCCCcEEEeCCCc-ccEeC---HHHhcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCCC-ccccCH-
Confidence 333444556666665542 22220 122345556666666555 3444433222 355566666665554 444432
Q ss_pred CCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454 93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFY 123 (410)
Q Consensus 93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 123 (410)
..+..+++|+.|+++++ .+..++
T Consensus 94 -------~~~~~l~~L~~L~l~~N-~l~~~~ 116 (177)
T 2o6r_A 94 -------GVFDKLTQLKELALDTN-QLKSVP 116 (177)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred -------HHhhCCcccCEEECcCC-cceEeC
Confidence 12344555666666555 344433
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=1.3e-06 Score=82.48 Aligned_cols=231 Identities=10% Similarity=0.096 Sum_probs=136.1
Q ss_pred cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcc
Q 036454 48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMH 127 (410)
Q Consensus 48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 127 (410)
+|+.+.+... ++.+....+. + .+|+++.+.. +++.++.. .+..+++|+.+++.++ .++.++...+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~--------aF~~c~~L~~l~l~~n-~l~~I~~~aF 200 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS--TLEQLKED--------IFYYCYNLKKADLSKT-KITKLPASTF 200 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT--TCCEECSS--------TTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC--CccEehHH--------HhhCcccCCeeecCCC-cceEechhhE
Confidence 5666666432 4445444332 3 2566666654 35555531 3345566666666654 4555544443
Q ss_pred cCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceE
Q 036454 128 ILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKL 196 (410)
Q Consensus 128 ~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 196 (410)
. +.+|+.+.+... ..+++|+.+.+..+ ...+.... -.+|+.+.+ ...+..+....+.++++|+.+
T Consensus 201 ~--~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 201 V--YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp T--TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEE
T ss_pred e--ecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEE
Confidence 2 356666665433 23456677766653 22222222 457888888 344566666778899999999
Q ss_pred EEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCc
Q 036454 197 VLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRN 275 (410)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~ 275 (410)
.+.++..............+.++++|+.+.+.+ ++ ..+ +...+..|++|+.+.+.. .++.+... +..+ +
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i-~~I---~~~aF~~c~~L~~l~lp~---~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SI-RIL---GQGLLGGNRKVTQLTIPA---NVTQINFSAFNNT-G 346 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TC-CEE---CTTTTTTCCSCCEEEECT---TCCEECTTSSSSS-C
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC--ce-EEE---hhhhhcCCCCccEEEECc---cccEEcHHhCCCC-C
Confidence 998865431100012234578899999999974 34 444 234578899999999966 34555432 3455 8
Q ss_pred cCEEEEcccCCcccccchhhhhcC-CCccEEEecc
Q 036454 276 LTVLKVCNCWQLISLVTPQTAKTL-VQLRELRVSE 309 (410)
Q Consensus 276 L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 309 (410)
|+.+.+.+. .+..+.. .....+ ..++.|++-.
T Consensus 347 L~~l~l~~n-~~~~l~~-~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 347 IKEVKVEGT-TPPQVFE-KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEEEECCS-SCCBCCC-SSCCCSCTTCCEEEECG
T ss_pred CCEEEEcCC-CCccccc-ccccCCCCCccEEEeCH
Confidence 999999775 3444432 122334 4688888865
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.65 E-value=7e-09 Score=88.27 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=53.0
Q ss_pred hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS 265 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 265 (410)
.+..+++|+.|++++|.+..+.. +..+++|++|+++++. + ..+ +.....+++|++|++++| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~-------~~~l~~L~~L~l~~n~-l-~~l----~~~~~~~~~L~~L~L~~N--~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISS-------LSGMENLRILSLGRNL-I-KKI----ENLDAVADTLEELWISYN--QIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCC-------HHHHTTCCEEEEEEEE-E-CSC----SSHHHHHHHCSEEEEEEE--ECCC
T ss_pred HHhcCCCCCEEECCCCCCccccc-------cccCCCCCEEECCCCC-c-ccc----cchhhcCCcCCEEECcCC--cCCc
Confidence 34556666666666665544321 3445566666665521 1 111 123344456666666665 3444
Q ss_pred cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 266 LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 266 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
++ .+..+++|++|+++++ .+..++.......+++|++|+++++
T Consensus 108 l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 108 LS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 43 3445555666666554 2433322123445555666666554
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=3.4e-06 Score=79.70 Aligned_cols=254 Identities=12% Similarity=0.118 Sum_probs=161.3
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS 124 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 124 (410)
.+..++.+.+-+ .++.++...+. ++ +|+.+.+... ++.++...| .. .+|+.+.+.. .++.+..
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~-~~-~L~~i~l~~~--i~~I~~~aF--------~~-~~L~~i~lp~--~l~~I~~ 173 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFR-NS-QIAKVVLNEG--LKSIGDMAF--------FN-STVQEIVFPS--TLEQLKE 173 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTT-TC-CCSEEECCTT--CCEECTTTT--------TT-CCCCEEECCT--TCCEECS
T ss_pred ecCCccEEEECC--ccCEehHhhcc-cC-CccEEEeCCC--ccEECHHhc--------CC-CCceEEEeCC--CccEehH
Confidence 557788888753 35566555543 44 7999998753 778876332 22 4689998875 5666666
Q ss_pred CcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhccc
Q 036454 125 GMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHN 192 (410)
Q Consensus 125 ~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~ 192 (410)
..+. .+++|+.+++.++ -...+|+.+.+..+ ...+.... +++|+.+.+.. .+..+....+.+ .+
T Consensus 174 ~aF~-~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFY-YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SG 249 (401)
T ss_dssp STTT-TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CC
T ss_pred HHhh-CcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CC
Confidence 6654 7899999999764 11357888888743 44444333 77899998833 245555555666 78
Q ss_pred CceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-Ccc
Q 036454 193 LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSA 271 (410)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~ 271 (410)
|+.+.+.. .+..+.. ..+.++++|+.+.+.+...........+...+..|++|+.+.+.+ .++.+.. .+.
T Consensus 250 L~~i~lp~-~i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF~ 320 (401)
T 4fdw_A 250 ITTVKLPN-GVTNIAS-----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLLG 320 (401)
T ss_dssp CSEEEEET-TCCEECT-----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTTT
T ss_pred ccEEEeCC-CccEECh-----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhhc
Confidence 99999954 3444422 357788999999997621100000001234578899999999985 4555554 345
Q ss_pred ccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccc-cccceeecCc
Q 036454 272 SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVF-SKLKWLFLES 339 (410)
Q Consensus 272 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~ 339 (410)
.+++|+.+.+.. +++.+.. .....+ +|+++.+.+... ..+. ..+.+ + .+++.|.+-.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~-~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~------~~~~l~~l~vp~ 379 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINF-SAFNNT-GIKEVKVEGTTP-PQVFEKVWYG------FPDDITVIRVPA 379 (401)
T ss_dssp TCCSCCEEEECT--TCCEECT-TSSSSS-CCCEEEECCSSC-CBCCCSSCCC------SCTTCCEEEECG
T ss_pred CCCCccEEEECc--cccEEcH-HhCCCC-CCCEEEEcCCCC-cccccccccC------CCCCccEEEeCH
Confidence 678999999954 4666543 334666 899999987532 2222 22222 3 3677777765
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.54 E-value=6.7e-08 Score=98.62 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=64.3
Q ss_pred ccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhh
Q 036454 216 AEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQT 295 (410)
Q Consensus 216 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 295 (410)
+..+++|+.|+|+++... .+ ...+..+++|++|++++| .++.+|..++.+++|++|+++++ .+..++ ..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~--~l----~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp--~~ 288 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF--NI----SANIFKYDFLTRLYLNGN--SLTELPAEIKNLSNLRVLDLSHN-RLTSLP--AE 288 (727)
T ss_dssp --CCCCCCEEECTTSCCS--CC----CGGGGGCCSCSCCBCTTS--CCSCCCGGGGGGTTCCEEECTTS-CCSSCC--SS
T ss_pred hccCCCCcEEECCCCCCC--CC----ChhhcCCCCCCEEEeeCC--cCcccChhhhCCCCCCEEeCcCC-cCCccC--hh
Confidence 455667777777763211 11 222345677777777777 45566666666777777777665 355554 23
Q ss_pred hhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454 296 AKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS 340 (410)
Q Consensus 296 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 340 (410)
+..+++|++|++++| .++.++..++. +++|+.|+|+++
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~------l~~L~~L~L~~N 326 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGN------LCNLQFLGVEGN 326 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTS------CTTCCCEECTTS
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhc------CCCccEEeCCCC
Confidence 466677777777764 45566666666 677777777764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=6.9e-09 Score=88.29 Aligned_cols=123 Identities=20% Similarity=0.134 Sum_probs=75.5
Q ss_pred cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454 166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD 245 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 245 (410)
+++|+.|+++...+..++ .+.++++|+.|++++|.+..+.. ....+++|++|+++++. + ..+ ..+
T Consensus 47 l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~------~~~~~~~L~~L~L~~N~-l-~~l-----~~~ 111 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN------LDAVADTLEELWISYNQ-I-ASL-----SGI 111 (198)
T ss_dssp TTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS------HHHHHHHCSEEEEEEEE-C-CCH-----HHH
T ss_pred CCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc------hhhcCCcCCEEECcCCc-C-CcC-----Ccc
Confidence 455555555333333444 45677888888888877665543 33445788888887742 2 111 245
Q ss_pred cccccceEEEEeccccccccccc--CccccCccCEEEEcccCCcccccc---------hhhhhcCCCccEEE
Q 036454 246 SFLQNLEFLEVKKCALSLISLVP--SSASFRNLTVLKVCNCWQLISLVT---------PQTAKTLVQLRELR 306 (410)
Q Consensus 246 ~~~~~L~~L~l~~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~~l~~L~~L~ 306 (410)
..+++|++|++++| .++.++. .+..+++|++|++++++ +....+ ......+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 67788888888888 4554432 45678888888887763 322211 12346778888776
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.53 E-value=9.5e-08 Score=97.53 Aligned_cols=107 Identities=20% Similarity=0.059 Sum_probs=49.8
Q ss_pred hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454 187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL 266 (410)
Q Consensus 187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l 266 (410)
+..+++|+.|++++|.+..+.. ....+++|++|+|+++ .+. ..+..+..+++|++|++++| .++.+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~------~~~~l~~L~~L~Ls~N-----~l~-~lp~~~~~l~~L~~L~Ls~N--~l~~l 285 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA------NIFKYDFLTRLYLNGN-----SLT-ELPAEIKNLSNLRVLDLSHN--RLTSL 285 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG------GGGGCCSCSCCBCTTS-----CCS-CCCGGGGGGTTCCEEECTTS--CCSSC
T ss_pred hccCCCCcEEECCCCCCCCCCh------hhcCCCCCCEEEeeCC-----cCc-ccChhhhCCCCCCEEeCcCC--cCCcc
Confidence 3445555555555555443332 1224455555555542 221 11223445555555555555 34445
Q ss_pred ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454 267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 310 (410)
|..++.+++|++|+++++ .+..++. .+..+++|++|+++++
T Consensus 286 p~~~~~l~~L~~L~L~~N-~l~~lp~--~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDN-MVTTLPW--EFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSSGGGGTTCSEEECCSS-CCCCCCS--STTSCTTCCCEECTTS
T ss_pred ChhhcCCCCCCEEECCCC-CCCccCh--hhhcCCCccEEeCCCC
Confidence 555555555555555444 3444432 2445555555555554
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=7.6e-08 Score=79.12 Aligned_cols=89 Identities=11% Similarity=0.280 Sum_probs=40.8
Q ss_pred cceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh---cCCCccEEEeccCcccchhc-cccCCCCc
Q 036454 250 NLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK---TLVQLRELRVSECNRLEEIV-ANDGDADD 325 (410)
Q Consensus 250 ~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~~-~~~~~~~~ 325 (410)
+|++|++++|. ....-...+..+++|++|++++|.++++........ ..++|++|++++|+.+++.- ..+..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~--- 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH--- 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG---
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc---
Confidence 45666666653 221112223455666666666665555443211111 12345555555555544321 11122
Q ss_pred cccccccceeecCcCcccce
Q 036454 326 EIVFSKLKWLFLESSESITS 345 (410)
Q Consensus 326 ~~~~~~L~~L~l~~c~~l~~ 345 (410)
+++|++|++++|+.+++
T Consensus 138 ---~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 ---FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ---CTTCCEEEEESCTTCCC
T ss_pred ---CCCCCEEECCCCCCCCc
Confidence 45555555555555554
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.4e-07 Score=77.53 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=70.2
Q ss_pred CccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc-cCCCCccccccccceeecCcCcccceecCCCcc
Q 036454 274 RNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLKWLFLESSESITSFCSGNYA 352 (410)
Q Consensus 274 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 352 (410)
.+|++|++++|. +++... ..+..+++|++|++++|..+++.... +.. .....++|+.|+|++|+++++......
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--LENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHT--CHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHh--cccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 469999999996 766544 23478999999999999988764221 111 000135899999999999998776544
Q ss_pred cCCCCccEEEEecCCCCcc
Q 036454 353 FSFPSLEDLIVENCPKLNT 371 (410)
Q Consensus 353 ~~~~~L~~L~l~~c~~l~~ 371 (410)
..|++|++|++++|+.++.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 3699999999999999875
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.38 E-value=8.3e-07 Score=73.62 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=66.2
Q ss_pred cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454 22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT 101 (410)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 101 (410)
+.+++++. .++.+ |..+ .++|++|+++++ .+..+++..+ +++++|++|+++++. +..++. ..
T Consensus 15 ~~l~~~~n-~l~~i----P~~~--~~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i~~--------~~ 76 (174)
T 2r9u_A 15 TLVNCQNI-RLASV----PAGI--PTDKQRLWLNNN-QITKLEPGVF-DHLVNLQQLYFNSNK-LTAIPT--------GV 76 (174)
T ss_dssp SEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT--------TT
T ss_pred cEEEeCCC-CCCcc----CCCc--CCCCcEEEeCCC-CccccCHHHh-cCCcCCCEEECCCCC-CCccCh--------hH
Confidence 56777765 34444 5554 388999999888 5666655443 688999999998886 777765 13
Q ss_pred cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEcc
Q 036454 102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNH 141 (410)
Q Consensus 102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 141 (410)
+..+++|+.|+++++ .++.++...+. .+++|++|++.+
T Consensus 77 ~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~L~~L~L~~ 114 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDN-HLKSIPRGAFD-NLKSLTHIYLYN 114 (174)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCSEEECCS
T ss_pred hCCcchhhEEECCCC-ccceeCHHHhc-cccCCCEEEeCC
Confidence 467889999999887 66666654332 344444444333
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.38 E-value=7.1e-07 Score=73.71 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=10.9
Q ss_pred hhhhcccCceEEEeccccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~ 206 (410)
.+.++++|+.|++++|.+..+
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCCC
T ss_pred hhcCcccCCEEECCCCCcCcc
Confidence 344555555555555554443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=2.3e-05 Score=73.90 Aligned_cols=164 Identities=10% Similarity=0.085 Sum_probs=100.2
Q ss_pred cccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC
Q 036454 190 IHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS 269 (410)
Q Consensus 190 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~ 269 (410)
..+|+.+.+.... ..+.. ..+.++.+|+.+.+..- . ..+ ....+..++.++.+...... +.. ..
T Consensus 229 ~~~l~~i~ip~~~-~~i~~-----~~f~~~~~l~~~~~~~~--~-~~i---~~~~F~~~~~l~~~~~~~~~--i~~--~~ 292 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGK-----SVFYGCTDLESISIQNN--K-LRI---GGSLFYNCSGLKKVIYGSVI--VPE--KT 292 (394)
T ss_dssp TCCCCEEEECTTC-CEECS-----STTTTCSSCCEEEECCT--T-CEE---CSCTTTTCTTCCEEEECSSE--ECT--TT
T ss_pred cCCCceEEECCCc-eeccc-----ccccccccceeEEcCCC--c-cee---eccccccccccceeccCcee--ecc--cc
Confidence 4678888876432 22211 23566788888888651 2 222 22345667788877766542 111 12
Q ss_pred ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeecCcCcccceecC
Q 036454 270 SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFLESSESITSFCS 348 (410)
Q Consensus 270 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 348 (410)
...+.+|+.+.+.. +++.+.. .....+.+|+.+++.. .++.+. ..+.+ +++|+++.+.. .++.+..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~aF~~------c~~L~~i~lp~--~l~~I~~ 359 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGKRSFRG------CTSLSNINFPL--SLRKIGA 359 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTTTTTT------CTTCCEECCCT--TCCEECT
T ss_pred cccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhHHhccC------CCCCCEEEECc--cccEehH
Confidence 35677888888854 3555542 3446778899988853 344442 22334 78899988864 3777766
Q ss_pred CCcccCCCCccEEEEecCCCCcccCCCCCCCCCccee
Q 036454 349 GNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAV 385 (410)
Q Consensus 349 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l 385 (410)
. .+.+|++|+.+.+.. +++.+...+...++|+.+
T Consensus 360 ~-aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 N-AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp T-TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred H-HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 5 366899999999864 455554455567777776
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=1.1e-06 Score=81.68 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=26.0
Q ss_pred cccccEEEEEeCCCccch----hhhhhhcccCceEEEecccccc
Q 036454 166 FHKLKILHFISDGSDFFQ----VGLLQNIHNLEKLVLSTCEYKK 205 (410)
Q Consensus 166 l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 205 (410)
+++|+.|+++.+.+.+.. ...+.++++|+.|+++.|.+..
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 667888888555444422 1233567899999998886543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.34 E-value=1.3e-06 Score=72.14 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=67.6
Q ss_pred CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454 20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA 99 (410)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 99 (410)
..+++++++. .++.+ |..+ .++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.
T Consensus 10 ~~~~l~~s~n-~l~~i----p~~~--~~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~-------- 71 (170)
T 3g39_A 10 SGTTVDCSGK-SLASV----PTGI--PTTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNNQ-LTVLPA-------- 71 (170)
T ss_dssp ETTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCT--------
T ss_pred CCCEEEeCCC-CcCcc----CccC--CCCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCCC-cCccCh--------
Confidence 3567888776 44444 5553 488999999988 6666655444 688999999999886 777765
Q ss_pred cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEE
Q 036454 100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEV 139 (410)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 139 (410)
..+..+++|+.|+++++ .++.++...+. .+++|++|++
T Consensus 72 ~~f~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L 109 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDN-QLKSIPRGAFD-NLKSLTHIWL 109 (170)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEEC
T ss_pred hhccCCCCCCEEECCCC-ccCEeCHHHhc-CCCCCCEEEe
Confidence 13467889999999987 67666654332 3444433333
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.31 E-value=1.3e-06 Score=72.35 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=10.8
Q ss_pred hhhhcccCceEEEeccccccc
Q 036454 186 LLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 186 ~l~~l~~L~~L~l~~~~~~~~ 206 (410)
.+.++++|+.|++++|.+..+
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCC
T ss_pred HhcCCcCCCEEECCCCCCCcc
Confidence 344555555555555554443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=1.2e-07 Score=88.93 Aligned_cols=171 Identities=16% Similarity=0.049 Sum_probs=84.9
Q ss_pred cccCCcEEEecCcccccc-ccccCCcccc-ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454 17 AATQLRELHVFHLPKLTK-LWNKDPQGKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG 94 (410)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~-~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 94 (410)
.+++|+.|+++++. ++. -+......+. ..++|++|++++| .+.+.....++..+++|++|++++|. +...+....
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHH
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHH
Confidence 35667777777763 221 1110001011 2257777777777 34433333344556677777777764 433221000
Q ss_pred CCCCCccc-ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-------ccc
Q 036454 95 RGNDAATK-FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-------AQF 166 (410)
Q Consensus 95 ~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-------~~l 166 (410)
+..+ ...++|+.|++++| .+.+.....+...+ ...++|++|++++|.+..... ...
T Consensus 147 ----~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L-----------~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 147 ----RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL-----------AGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ----HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH-----------HTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred ----HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH-----------hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 0011 12456777777776 33332111110000 112456666666665443211 015
Q ss_pred ccccEEEEEeCCCccchh----hhhhhcccCceEEEeccccccc
Q 036454 167 HKLKILHFISDGSDFFQV----GLLQNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 167 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~ 206 (410)
++|+.|+++.+.++.... ..+...++|+.|++++|.+...
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 578888885555554332 2345678999999999876544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=1e-06 Score=81.87 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=17.5
Q ss_pred ccccceeecCcCcccceecCCC---cccCCCCccEEEEecC
Q 036454 329 FSKLKWLFLESSESITSFCSGN---YAFSFPSLEDLIVENC 366 (410)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c 366 (410)
+++|++|+|+. +.+.+..... ...++++|+.|+++.|
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 55666666654 3344421111 1123566666666555
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=6e-05 Score=71.00 Aligned_cols=124 Identities=12% Similarity=0.008 Sum_probs=76.9
Q ss_pred cccccccceEEEEecccccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc-ccC
Q 036454 244 LDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDG 321 (410)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 321 (410)
.+..+.+++.+.+.... ..+. .....+..++.+..... .++ ......+.+|+++.+.. .++.+.. .+.
T Consensus 248 ~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~----~i~-~~~F~~~~~L~~i~l~~--~i~~I~~~aF~ 317 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSV----IVP-EKTFYGCSSLTEVKLLD--SVKFIGEEAFE 317 (394)
T ss_dssp TTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSS----EEC-TTTTTTCTTCCEEEECT--TCCEECTTTTT
T ss_pred cccccccceeEEcCCCc---ceeeccccccccccceeccCce----eec-ccccccccccccccccc--ccceechhhhc
Confidence 45566777777776542 1222 22345566666655332 111 12346678899888854 3444432 233
Q ss_pred CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC-CCCCCcceeEec
Q 036454 322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV-LKTPRLQAVQNW 388 (410)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~~~ 388 (410)
+ +++|+++.+.. .++.+... .+.+|.+|+.+.+.. +++.+.... ..+++|+.+.+.
T Consensus 318 ~------c~~L~~i~lp~--~v~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 318 S------CTSLVSIDLPY--LVEEIGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp T------CTTCCEECCCT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred C------CCCCCEEEeCC--cccEEhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 4 78899998864 47777655 356799999998853 477776553 467999999995
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=1.3e-07 Score=88.56 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=6.8
Q ss_pred cccCceEEEecccc
Q 036454 190 IHNLEKLVLSTCEY 203 (410)
Q Consensus 190 l~~L~~L~l~~~~~ 203 (410)
+++|+.|++++|.+
T Consensus 125 L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 125 FLRARKLGLQLNSL 138 (372)
T ss_dssp HHTEEEEECCSSCC
T ss_pred HHhccHhhcCCCCC
Confidence 34455555555443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.94 E-value=2.4e-05 Score=72.36 Aligned_cols=102 Identities=21% Similarity=0.144 Sum_probs=64.4
Q ss_pred EEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCccc
Q 036454 23 ELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATK 102 (410)
Q Consensus 23 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 102 (410)
.+++.+...++.+ |. +..+++|++|+|+++..+..+++..+ +++++|++|+++++. +..++. ..+
T Consensus 12 ~v~~~~~n~l~~i----p~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~--------~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDSL----HH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAP--------DAF 76 (347)
T ss_dssp CEECCSSCCCTTT----TT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECT--------TGG
T ss_pred EEEcCCCCCCCcc----CC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCc-cceeCH--------HHh
Confidence 3455544344444 66 77788888888886336776765443 578888888888875 777664 145
Q ss_pred ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC
Q 036454 103 FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV 142 (410)
Q Consensus 103 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 142 (410)
..+++|+.|+|+++ .+..++...+. .++ |+.|++.++
T Consensus 77 ~~l~~L~~L~l~~N-~l~~~~~~~~~-~~~-L~~l~l~~N 113 (347)
T 2ifg_A 77 HFTPRLSRLNLSFN-ALESLSWKTVQ-GLS-LQELVLSGN 113 (347)
T ss_dssp GSCSCCCEEECCSS-CCSCCCSTTTC-SCC-CCEEECCSS
T ss_pred cCCcCCCEEeCCCC-ccceeCHHHcc-cCC-ceEEEeeCC
Confidence 67788888888887 66666654432 122 444444443
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.0023 Score=60.07 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred cccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccch
Q 036454 215 HAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTP 293 (410)
Q Consensus 215 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 293 (410)
.+.++.+|+.+.+.. .+ ..+ +...+..+++|+.+.+.. .++.+... ...+.+|+.+.|.. +++.+..
T Consensus 260 aF~~c~~L~~i~lp~--~~-~~I---~~~aF~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~- 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SV-VSI---GTGAFMNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPE--GITQILD- 327 (394)
T ss_dssp TTTTCSSCCEEECCT--TC-CEE---CTTTTTTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCT--TCCEECT-
T ss_pred eeeecccccEEeccc--cc-cee---cCcccccccccccccCCC---cccccCceeecCCCCcCEEEeCC--cccEehH-
Confidence 356677888887754 11 222 223466778888888864 45555443 34567888888853 3555532
Q ss_pred hhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEe
Q 036454 294 QTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVE 364 (410)
Q Consensus 294 ~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 364 (410)
.....+.+|+++.+-. .++.+. ..+.+ +++|+++.+.+... ... .+..+.+|+.+.+.
T Consensus 328 ~aF~~C~~L~~i~ip~--sv~~I~~~aF~~------C~~L~~i~~~~~~~--~~~---~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS--SVTKIPESAFSN------CTALNNIEYSGSRS--QWN---AISTDSGLQNLPVA 386 (394)
T ss_dssp TTTTTCTTCCEEEECT--TCCBCCGGGGTT------CTTCCEEEESSCHH--HHH---TCBCCCCC------
T ss_pred hHhhCCCCCCEEEECc--ccCEEhHhHhhC------CCCCCEEEECCcee--ehh---hhhccCCCCEEEeC
Confidence 3456778888888853 233332 22334 78888888877421 111 22357778777664
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.69 E-value=5.7e-05 Score=69.75 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=32.0
Q ss_pred cccccEEEEEe-CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454 166 FHKLKILHFIS-DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK 229 (410)
Q Consensus 166 l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 229 (410)
+.+|+.|+++. +.+..++...+.++++|+.|++++|.+..+.+ ..+..+++|+.|+|++
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-----DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-----TGGGSCSCCCEEECCS
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-----HHhcCCcCCCEEeCCC
Confidence 44566666643 55555555555556666666666655555433 1234455566666555
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.53 E-value=0.018 Score=53.79 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=15.3
Q ss_pred ccccceeecCcCcccceecCCCcccCCCCccEEEEec
Q 036454 329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVEN 365 (410)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 365 (410)
+++|+++.|-. .++.+... -+.+|++|+.+++.+
T Consensus 333 C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESS
T ss_pred CCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECC
Confidence 45555555532 23333332 233455555555543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.074 Score=49.25 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=22.3
Q ss_pred ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEec
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVA 91 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 91 (410)
...+|+.+.+-. .++.++...+ .++.+|+++++.. +++.++.
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~aF-~~C~~L~~I~lp~--~v~~Ig~ 85 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEANF-NSCYNMTKVTVAS--TVTSIGD 85 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTTT-TTCTTCCEEEECT--TCCEECT
T ss_pred cccCCEEEEeCC--CccChHHHHh-hCCCCCCEEEeCC--cceEech
Confidence 345666666642 3444544333 4666666666643 2555554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.093 Score=48.58 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=146.1
Q ss_pred cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454 17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG 96 (410)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 96 (410)
...+|+.+.+.+ +++.+- ..-+..+.+|+.+.+-. .++.+....+ .++ +|+.+.+. .+++.++.
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig---~~aF~~C~~L~~I~lp~--~v~~Ig~~aF-~~c-~l~~i~~~--~~l~~I~~----- 107 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIG---EANFNSCYNMTKVTVAS--TVTSIGDGAF-ADT-KLQSYTGM--ERVKKFGD----- 107 (379)
T ss_dssp GGGGCSEEEECT--TEEEEC---TTTTTTCTTCCEEEECT--TCCEECTTTT-TTC-CCCEEEEC--TTCCEECT-----
T ss_pred cccCCEEEEeCC--CccChH---HHHhhCCCCCCEEEeCC--cceEechhhh-cCC-CCceEECC--ceeeEecc-----
Confidence 356788888864 344441 12245788899999853 3555655444 344 57766664 33666665
Q ss_pred CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCccccccc---
Q 036454 97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQA--- 164 (410)
Q Consensus 97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~--- 164 (410)
......+|+.+.+... +..+....+ ...+++.+.+... .....++...+...........
T Consensus 108 ----~aF~~~~L~~i~lp~~--~~~i~~~~F--~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (379)
T 4h09_A 108 ----YVFQGTDLDDFEFPGA--TTEIGNYIF--YNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL 179 (379)
T ss_dssp ----TTTTTCCCSEEECCTT--CCEECTTTT--TTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred ----ceeccCCcccccCCCc--ccccccccc--ccceeeeeeccceeeccccchhcccccccccccccccceeeccccee
Confidence 2223346777777542 222222221 1123444433222 1123444444332221111000
Q ss_pred ------------ccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454 165 ------------QFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL 232 (410)
Q Consensus 165 ------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 232 (410)
....+..+.+. .............+.+|+.+.+... +..+.. ..+.++.+|+.+.+.. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~-----~~f~~~~~L~~i~lp~--~ 250 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIP-STVKTVTAYGFSYGKNLKKITITSG-VTTLGD-----GAFYGMKALDEIAIPK--N 250 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECC-TTCCEECTTTTTTCSSCSEEECCTT-CCEECT-----TTTTTCSSCCEEEECT--T
T ss_pred cccccceeccccccccccccccc-cceeEEeecccccccccceeeeccc-eeEEcc-----ccccCCccceEEEcCC--C
Confidence 02233333331 1112222233456678888877543 222211 1355678888888854 2
Q ss_pred ccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454 233 IEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN 311 (410)
Q Consensus 233 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 311 (410)
+ +.+ +...+..+.+|+.+.+.. .+..+.. ....+.+|+.+.+.+. .++.+.. .....+.+|+.+.+..
T Consensus 251 v-~~I---~~~aF~~~~~l~~i~l~~---~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~-~aF~~c~~L~~i~lp~-- 319 (379)
T 4h09_A 251 V-TSI---GSFLLQNCTALKTLNFYA---KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEP-RVFMDCVKLSSVTLPT-- 319 (379)
T ss_dssp C-CEE---CTTTTTTCTTCCEEEECC---CCSEECTTTTTTCTTCCEEEECCT-TCCEECT-TTTTTCTTCCEEECCT--
T ss_pred c-cEe---Cccccceeehhccccccc---cceecccccccccccccccccccc-ccceehh-hhhcCCCCCCEEEcCc--
Confidence 3 333 233567788888888865 3444443 2356788999888543 3555543 3456778899988853
Q ss_pred ccchhcc-ccCCCCccccccccceeecCcCcccceecCC
Q 036454 312 RLEEIVA-NDGDADDEIVFSKLKWLFLESSESITSFCSG 349 (410)
Q Consensus 312 ~l~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 349 (410)
.++.+.. .+.+ +++|+++.+-. .++.+...
T Consensus 320 ~l~~I~~~aF~~------C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 320 ALKTIQVYAFKN------CKALSTISYPK--SITLIESG 350 (379)
T ss_dssp TCCEECTTTTTT------CTTCCCCCCCT--TCCEECTT
T ss_pred cccEEHHHHhhC------CCCCCEEEECC--ccCEEchh
Confidence 2444322 2334 78888888753 46666554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.48 E-value=0.00094 Score=55.55 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=58.4
Q ss_pred hhhhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc
Q 036454 185 GLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL 263 (410)
Q Consensus 185 ~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l 263 (410)
..+...+.|++|++++| .+...... .........++|++|+|+++..-+... ..-...+...++|++|++++|. +
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~-~l~~~L~~~~~L~~L~Ls~n~i~~~g~-~~l~~~L~~n~~L~~L~L~~N~--i 105 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGTRSNDPVA-FALAEMLKVNNTLKSLNVESNF--I 105 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTSCCCHHHH-HHHHHHHHHCSSCCEEECCSSC--C
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHH-HHHHHHHhCCCcCEEECcCCCCChHHH-HHHHHHHHhCCCcCEEECcCCc--C
Confidence 34566777888888777 55432110 001122334677777777743210000 0001123344667777777763 3
Q ss_pred cc-----cccCccccCccCEEEE--cccCCcccccc---hhhhhcCCCccEEEeccC
Q 036454 264 IS-----LVPSSASFRNLTVLKV--CNCWQLISLVT---PQTAKTLVQLRELRVSEC 310 (410)
Q Consensus 264 ~~-----l~~~~~~~~~L~~L~l--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c 310 (410)
.+ +...+...++|++|++ +++ .+..-.. ...+...++|++|++++|
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 22 2233444556777777 433 3433221 122344566777777654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.44 E-value=0.0018 Score=57.08 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=10.7
Q ss_pred hhcccCceEEEeccccccc
Q 036454 188 QNIHNLEKLVLSTCEYKKI 206 (410)
Q Consensus 188 ~~l~~L~~L~l~~~~~~~~ 206 (410)
.++++|+.|++++|.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l 185 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL 185 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC
T ss_pred hhCCCCCEEECCCCCCCCC
Confidence 3456666666666655443
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.28 E-value=0.0027 Score=52.74 Aligned_cols=43 Identities=7% Similarity=-0.050 Sum_probs=21.3
Q ss_pred hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454 70 RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL 116 (410)
Q Consensus 70 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 116 (410)
...++|++|++++|..+....... ....+...++|++|+|+++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~----l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKA----CAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHH----HHHHHTTCCSCCEEECTTS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHH----HHHHHHhCCCcCEEECcCC
Confidence 456677777777662243211100 0002333456777777666
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.23 E-value=0.0029 Score=55.67 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=52.6
Q ss_pred ccCcccEEEeccCcCccccCch-hHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCC--CccEEeeccCCCccc
Q 036454 45 IFRNLVVVRIFDCQSLKNIFPT-SIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP--SLTFLRLRDLPDLTT 121 (410)
Q Consensus 45 ~l~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~ 121 (410)
.+++|++|+|+++ .+..+.+. ..+..+++|++|+++++. +..+. .+..+. +|+.|++++++--..
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~----------~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER----------ELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG----------GGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCch----------hhhhcccCCcceEEccCCcCccc
Confidence 6889999999988 55554332 233688999999998876 65542 233333 899999998864433
Q ss_pred cccC-----cccCCCCCceEEE
Q 036454 122 FYSG-----MHILECPELRKLE 138 (410)
Q Consensus 122 ~~~~-----~~~~~~~~L~~L~ 138 (410)
++.. .+...+|+|+.|+
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 3210 1123577777765
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.16 E-value=0.63 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=17.1
Q ss_pred cccEEEEEeCCCccchhhhhhhcccCceEEEecc
Q 036454 168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTC 201 (410)
Q Consensus 168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 201 (410)
+|+.|+|+.+.+..++...+..+++|+.|.+.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444334444444445555566666666654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.91 E-value=2.5 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=15.3
Q ss_pred cccEEEeccCcCccccCchhHHhhhhccceEeeccc
Q 036454 48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC 83 (410)
Q Consensus 48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 83 (410)
+|++|+|+++ .++.+++.. +..+++|++|+++++
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGL-LDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTT-GGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChhh-hhhccccCEEEecCC
Confidence 4555555544 344443322 234455555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=71.19 E-value=1.4 Score=36.52 Aligned_cols=119 Identities=16% Similarity=0.056 Sum_probs=53.0
Q ss_pred hhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454 187 LQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS 265 (410)
Q Consensus 187 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~ 265 (410)
+.+-+.|+.|+++++ .+..-....+. .....-..|+.|+|+++..- ..-...-.+.+..-+.|++|++++|. +..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~--Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNF--LTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSB--CCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCc--CCH
Confidence 344567777777654 43221110000 11223356777777764322 10000001223344677777777763 221
Q ss_pred -----cccCccccCccCEEEEcccC--Cccccc---chhhhhcCCCccEEEecc
Q 036454 266 -----LVPSSASFRNLTVLKVCNCW--QLISLV---TPQTAKTLVQLRELRVSE 309 (410)
Q Consensus 266 -----l~~~~~~~~~L~~L~l~~c~--~l~~~~---~~~~~~~l~~L~~L~l~~ 309 (410)
+...+..-..|++|+++++. .+..-. ....+..-+.|++|++..
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 22223334457777776442 222211 112234456677777754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=69.11 E-value=2.3 Score=35.13 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=8.1
Q ss_pred ccccEEEeeccCcc
Q 036454 146 ANLEELTLSKCIFT 159 (410)
Q Consensus 146 ~~L~~L~i~~~~~~ 159 (410)
++|++|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 45666666665553
Done!