Query 036458
Match_columns 445
No_of_seqs 365 out of 2340
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 3E-104 6E-109 790.3 39.7 436 1-437 1-437 (438)
2 KOG1439 RAB proteins geranylge 100.0 1.2E-96 3E-101 699.6 32.0 436 1-437 1-437 (440)
3 PTZ00363 rab-GDP dissociation 100.0 9.6E-95 2.1E-99 731.4 46.0 440 1-441 1-442 (443)
4 COG5044 MRS6 RAB proteins gera 100.0 4.7E-79 1E-83 572.8 30.0 427 1-436 1-433 (434)
5 KOG4405 GDP dissociation inhib 100.0 2.6E-64 5.6E-69 477.0 22.2 429 3-439 7-509 (547)
6 TIGR02734 crtI_fam phytoene de 100.0 9.7E-28 2.1E-32 250.4 31.3 319 7-360 1-379 (502)
7 TIGR02733 desat_CrtD C-3',4' d 100.0 6.9E-27 1.5E-31 243.3 28.1 319 4-359 1-377 (492)
8 COG1233 Phytoene dehydrogenase 100.0 4.7E-27 1E-31 243.1 21.7 252 3-287 2-279 (487)
9 TIGR02730 carot_isom carotene 100.0 4.8E-26 1E-30 236.9 29.2 322 5-359 1-377 (493)
10 COG1232 HemY Protoporphyrinoge 99.9 3.9E-25 8.4E-30 221.6 27.4 380 6-425 2-442 (444)
11 TIGR00562 proto_IX_ox protopor 99.9 3E-24 6.5E-29 221.9 33.2 382 4-426 2-457 (462)
12 PRK07233 hypothetical protein; 99.9 3.3E-24 7.2E-29 219.5 31.5 248 6-286 1-251 (434)
13 PRK12416 protoporphyrinogen ox 99.9 1.7E-23 3.6E-28 216.4 33.4 380 6-426 3-458 (463)
14 PLN02576 protoporphyrinogen ox 99.9 3.3E-23 7.2E-28 216.0 33.9 387 3-426 11-484 (496)
15 PRK11883 protoporphyrinogen ox 99.9 1E-22 2.2E-27 209.6 34.6 379 6-426 2-449 (451)
16 PRK07208 hypothetical protein; 99.9 8.1E-22 1.7E-26 204.7 25.9 251 1-286 1-277 (479)
17 PLN02612 phytoene desaturase 99.9 1.1E-20 2.3E-25 199.0 26.4 253 4-286 93-363 (567)
18 TIGR02732 zeta_caro_desat caro 99.9 7.3E-21 1.6E-25 196.5 24.2 255 6-287 1-282 (474)
19 TIGR02731 phytoene_desat phyto 99.9 3.1E-20 6.8E-25 191.4 25.8 252 6-286 1-273 (453)
20 PLN02487 zeta-carotene desatur 99.9 2.8E-20 6E-25 194.1 24.1 258 5-287 76-358 (569)
21 TIGR03467 HpnE squalene-associ 99.8 1.7E-17 3.7E-22 169.0 21.2 238 18-286 1-251 (419)
22 PLN02268 probable polyamine ox 99.8 7.4E-18 1.6E-22 172.9 17.8 225 5-286 1-249 (435)
23 KOG4254 Phytoene desaturase [C 99.8 6.4E-17 1.4E-21 157.2 21.3 65 223-288 255-320 (561)
24 PRK13977 myosin-cross-reactive 99.8 5.1E-17 1.1E-21 167.0 20.4 240 4-286 22-290 (576)
25 PLN02568 polyamine oxidase 99.7 4.2E-16 9.1E-21 162.7 22.6 78 1-98 2-86 (539)
26 COG2907 Predicted NAD/FAD-bind 99.7 1.5E-15 3.2E-20 143.5 19.6 250 4-285 8-269 (447)
27 PLN02529 lysine-specific histo 99.7 1.6E-15 3.4E-20 161.8 21.9 258 4-310 160-447 (738)
28 PLN02676 polyamine oxidase 99.7 1.2E-15 2.5E-20 158.1 19.7 263 3-310 25-326 (487)
29 PLN02328 lysine-specific histo 99.7 2.2E-15 4.7E-20 161.5 21.7 258 4-310 238-527 (808)
30 COG1231 Monoamine oxidase [Ami 99.7 9.1E-16 2E-20 151.1 14.6 242 3-286 6-259 (450)
31 PLN03000 amine oxidase 99.6 1.5E-14 3.4E-19 155.0 21.3 260 4-310 184-471 (881)
32 KOG1276 Protoporphyrinogen oxi 99.6 2.9E-14 6.3E-19 138.4 21.1 233 4-265 11-282 (491)
33 KOG0029 Amine oxidase [Seconda 99.6 4.8E-15 1E-19 152.4 14.9 75 4-98 15-92 (501)
34 PF01593 Amino_oxidase: Flavin 99.6 2.1E-14 4.5E-19 145.8 11.6 74 14-105 1-75 (450)
35 COG3349 Uncharacterized conser 99.5 3.1E-14 6.7E-19 142.8 12.1 240 6-274 2-260 (485)
36 PF13450 NAD_binding_8: NAD(P) 99.5 5.1E-14 1.1E-18 105.3 7.2 63 9-91 1-66 (68)
37 TIGR00031 UDP-GALP_mutase UDP- 99.5 2E-12 4.3E-17 128.8 16.9 92 5-121 2-96 (377)
38 PLN02976 amine oxidase 99.4 7.3E-12 1.6E-16 138.4 19.8 60 4-82 693-752 (1713)
39 KOG0685 Flavin-containing amin 99.4 5.3E-12 1.2E-16 124.6 16.8 72 3-94 20-94 (498)
40 COG0562 Glf UDP-galactopyranos 99.3 2.1E-11 4.7E-16 114.6 11.5 117 4-145 1-121 (374)
41 PF01266 DAO: FAD dependent ox 99.3 5.7E-11 1.2E-15 117.8 13.0 65 224-289 136-203 (358)
42 COG2081 Predicted flavoprotein 99.2 5.1E-10 1.1E-14 109.1 16.2 60 225-286 103-164 (408)
43 PRK11728 hydroxyglutarate oxid 99.2 3.1E-10 6.7E-15 115.0 15.2 63 225-289 139-204 (393)
44 COG0579 Predicted dehydrogenas 99.2 3.6E-10 7.9E-15 113.3 14.4 63 225-288 143-210 (429)
45 PF03486 HI0933_like: HI0933-l 99.1 6.3E-10 1.4E-14 112.3 13.5 62 224-286 100-163 (409)
46 PRK12409 D-amino acid dehydrog 99.1 3.1E-09 6.6E-14 108.3 15.7 65 224-289 186-258 (410)
47 TIGR01377 soxA_mon sarcosine o 99.1 4.6E-09 9.9E-14 105.8 16.8 63 225-289 135-200 (380)
48 PRK08274 tricarballylate dehyd 99.0 3E-09 6.5E-14 110.3 15.0 61 227-288 126-191 (466)
49 PRK11101 glpA sn-glycerol-3-ph 99.0 3.9E-09 8.4E-14 111.3 15.5 65 224-290 139-212 (546)
50 TIGR01373 soxB sarcosine oxida 99.0 1.2E-08 2.6E-13 103.8 16.9 56 233-288 184-239 (407)
51 PRK00711 D-amino acid dehydrog 99.0 1.4E-08 3E-13 103.7 17.2 64 225-289 191-257 (416)
52 COG3380 Predicted NAD/FAD-depe 99.0 7.4E-10 1.6E-14 102.1 6.5 66 6-91 3-68 (331)
53 PRK11259 solA N-methyltryptoph 99.0 2.9E-08 6.3E-13 99.8 17.7 63 225-289 139-204 (376)
54 PTZ00383 malate:quinone oxidor 98.9 3.8E-08 8.2E-13 102.0 17.5 64 225-289 200-273 (497)
55 COG0578 GlpA Glycerol-3-phosph 98.9 1.4E-08 3E-13 104.1 13.6 67 223-291 153-227 (532)
56 PRK12845 3-ketosteroid-delta-1 98.9 1.5E-08 3.3E-13 106.9 13.8 42 2-44 14-55 (564)
57 TIGR01320 mal_quin_oxido malat 98.9 7.9E-08 1.7E-12 99.7 17.8 65 225-289 168-240 (483)
58 TIGR03329 Phn_aa_oxid putative 98.9 2E-08 4.3E-13 103.9 12.7 62 224-288 172-236 (460)
59 PRK01747 mnmC bifunctional tRN 98.9 3.9E-08 8.4E-13 106.3 15.4 63 224-289 397-463 (662)
60 PRK05257 malate:quinone oxidor 98.9 1.6E-07 3.5E-12 97.5 19.4 65 225-289 173-246 (494)
61 KOG2820 FAD-dependent oxidored 98.9 1.2E-07 2.7E-12 90.1 16.4 55 234-288 155-211 (399)
62 PF06100 Strep_67kDa_ant: Stre 98.8 1.4E-07 3E-12 95.1 17.5 238 4-285 2-270 (500)
63 PRK08773 2-octaprenyl-3-methyl 98.8 8.2E-08 1.8E-12 97.2 15.8 55 233-289 114-169 (392)
64 TIGR03364 HpnW_proposed FAD de 98.8 1.5E-07 3.2E-12 94.4 16.4 34 5-38 1-34 (365)
65 PRK13339 malate:quinone oxidor 98.8 2E-07 4.4E-12 96.3 17.5 42 3-44 5-48 (497)
66 PF01946 Thi4: Thi4 family; PD 98.8 3.9E-09 8.6E-14 95.1 4.2 42 3-44 16-57 (230)
67 PRK06847 hypothetical protein; 98.8 8.5E-08 1.9E-12 96.4 14.3 39 1-39 1-39 (375)
68 PRK06134 putative FAD-binding 98.8 4.4E-07 9.6E-12 96.5 19.5 43 2-44 10-52 (581)
69 COG1635 THI4 Ribulose 1,5-bisp 98.7 8.6E-09 1.9E-13 92.4 4.7 41 4-44 30-70 (262)
70 PRK07190 hypothetical protein; 98.7 2.5E-07 5.4E-12 96.2 15.3 39 1-39 1-40 (487)
71 PRK12843 putative FAD-binding 98.7 9.1E-07 2E-11 94.0 18.7 42 3-44 15-56 (578)
72 COG0654 UbiH 2-polyprenyl-6-me 98.7 4E-07 8.6E-12 92.1 14.7 58 231-289 103-162 (387)
73 PRK08243 4-hydroxybenzoate 3-m 98.6 8.9E-07 1.9E-11 89.7 16.1 35 4-38 2-36 (392)
74 PRK08958 sdhA succinate dehydr 98.6 1.1E-06 2.5E-11 93.4 16.4 55 232-286 143-203 (588)
75 PRK10157 putative oxidoreducta 98.6 5.7E-08 1.2E-12 99.5 5.7 54 234-288 110-163 (428)
76 TIGR00292 thiazole biosynthesi 98.6 5.9E-08 1.3E-12 92.0 5.3 40 4-43 21-60 (254)
77 PRK04176 ribulose-1,5-biphosph 98.6 6.8E-08 1.5E-12 91.8 5.5 41 3-43 24-64 (257)
78 COG0644 FixC Dehydrogenases (f 98.6 6.4E-08 1.4E-12 98.2 5.5 43 3-45 2-44 (396)
79 PRK10015 oxidoreductase; Provi 98.5 8.3E-08 1.8E-12 98.3 5.5 42 1-42 1-43 (429)
80 TIGR02485 CobZ_N-term precorri 98.5 6.9E-07 1.5E-11 91.7 11.7 64 225-288 116-182 (432)
81 TIGR00275 flavoprotein, HI0933 98.5 1.5E-06 3.3E-11 88.2 13.8 61 225-287 97-158 (400)
82 PRK12266 glpD glycerol-3-phosp 98.5 1.2E-07 2.5E-12 99.3 5.8 44 1-44 3-46 (508)
83 PLN02172 flavin-containing mon 98.5 1.4E-07 3E-12 97.3 5.6 45 1-45 7-51 (461)
84 PRK06467 dihydrolipoamide dehy 98.5 1.4E-07 3E-12 97.9 5.4 44 1-44 1-44 (471)
85 PRK06116 glutathione reductase 98.5 1.3E-07 2.7E-12 97.7 5.1 43 1-44 1-43 (450)
86 PRK05249 soluble pyridine nucl 98.4 1.9E-07 4.1E-12 96.7 5.5 43 3-45 4-46 (461)
87 PRK05976 dihydrolipoamide dehy 98.4 2E-07 4.2E-12 96.9 5.5 44 1-45 1-44 (472)
88 PRK08010 pyridine nucleotide-d 98.4 1.9E-07 4.1E-12 96.1 5.1 44 2-45 1-45 (441)
89 PF01494 FAD_binding_3: FAD bi 98.4 1.8E-07 3.8E-12 92.7 4.7 36 4-39 1-36 (356)
90 PRK06115 dihydrolipoamide dehy 98.4 2.2E-07 4.7E-12 96.3 5.1 43 1-44 1-43 (466)
91 PRK13369 glycerol-3-phosphate 98.4 2.8E-07 6.1E-12 96.4 5.7 44 1-44 3-46 (502)
92 COG2072 TrkA Predicted flavopr 98.4 3.6E-07 7.8E-12 93.8 6.3 49 2-50 6-55 (443)
93 PRK06370 mercuric reductase; V 98.4 3E-07 6.5E-12 95.3 5.5 43 1-44 2-44 (463)
94 PRK07251 pyridine nucleotide-d 98.4 2.9E-07 6.2E-12 94.7 5.3 43 1-44 1-44 (438)
95 PRK06327 dihydrolipoamide dehy 98.4 3.8E-07 8.2E-12 94.8 5.5 45 1-45 1-51 (475)
96 TIGR02032 GG-red-SF geranylger 98.4 4.1E-07 9E-12 87.8 5.4 37 5-41 1-37 (295)
97 PF12831 FAD_oxidored: FAD dep 98.4 3.6E-07 7.8E-12 93.6 5.0 40 6-45 1-40 (428)
98 PRK05329 anaerobic glycerol-3- 98.4 2.1E-05 4.6E-10 80.0 17.6 55 233-288 260-317 (422)
99 PRK07818 dihydrolipoamide dehy 98.4 4.6E-07 1E-11 93.9 5.6 44 1-45 1-44 (466)
100 PLN02985 squalene monooxygenas 98.3 1.3E-06 2.9E-11 91.3 8.8 36 3-38 42-77 (514)
101 TIGR03143 AhpF_homolog putativ 98.3 4.5E-07 9.7E-12 95.9 5.3 44 1-45 1-44 (555)
102 PRK07364 2-octaprenyl-6-methox 98.3 5E-07 1.1E-11 92.1 5.4 39 1-39 15-53 (415)
103 PRK12834 putative FAD-binding 98.3 5.4E-07 1.2E-11 95.3 5.6 44 1-44 1-46 (549)
104 PRK06481 fumarate reductase fl 98.3 5.6E-07 1.2E-11 94.2 5.6 43 2-44 59-101 (506)
105 PRK06416 dihydrolipoamide dehy 98.3 5.1E-07 1.1E-11 93.5 5.2 43 2-45 2-44 (462)
106 KOG1298 Squalene monooxygenase 98.3 1.1E-06 2.3E-11 85.1 6.8 34 3-36 44-77 (509)
107 TIGR01350 lipoamide_DH dihydro 98.3 5.7E-07 1.2E-11 93.1 5.3 41 4-45 1-41 (461)
108 TIGR01424 gluta_reduc_2 glutat 98.3 5.2E-07 1.1E-11 93.0 4.9 40 4-44 2-41 (446)
109 PRK05192 tRNA uridine 5-carbox 98.3 5.7E-07 1.2E-11 94.2 5.1 42 1-42 1-43 (618)
110 KOG2844 Dimethylglycine dehydr 98.3 2.8E-06 6E-11 87.4 9.9 65 226-291 178-245 (856)
111 TIGR03378 glycerol3P_GlpB glyc 98.3 1.2E-05 2.7E-10 80.9 14.3 58 232-290 263-324 (419)
112 PRK08163 salicylate hydroxylas 98.3 6.3E-07 1.4E-11 90.8 5.2 39 1-39 1-39 (396)
113 PRK07121 hypothetical protein; 98.3 7.1E-07 1.5E-11 93.2 5.6 58 231-288 176-238 (492)
114 TIGR01421 gluta_reduc_1 glutat 98.3 5.8E-07 1.3E-11 92.7 4.9 41 3-44 1-41 (450)
115 PRK07494 2-octaprenyl-6-methox 98.3 6.9E-07 1.5E-11 90.3 5.4 38 2-39 5-42 (388)
116 PRK09126 hypothetical protein; 98.3 7E-07 1.5E-11 90.3 5.1 39 1-40 1-39 (392)
117 PF13738 Pyr_redox_3: Pyridine 98.3 5.9E-07 1.3E-11 82.0 4.0 38 8-45 1-39 (203)
118 PRK06292 dihydrolipoamide dehy 98.3 8.3E-07 1.8E-11 91.9 5.4 41 3-44 2-42 (460)
119 PRK08013 oxidoreductase; Provi 98.3 8.4E-07 1.8E-11 90.1 5.3 38 1-39 1-38 (400)
120 PRK08849 2-octaprenyl-3-methyl 98.3 7.5E-07 1.6E-11 90.0 4.9 36 1-37 1-36 (384)
121 COG0665 DadA Glycine/D-amino a 98.3 8.7E-07 1.9E-11 89.3 5.4 63 225-289 146-212 (387)
122 PRK07045 putative monooxygenas 98.3 8.8E-07 1.9E-11 89.6 5.0 39 1-39 1-40 (388)
123 PRK13748 putative mercuric red 98.3 9.1E-07 2E-11 93.9 5.2 42 3-45 97-138 (561)
124 PTZ00052 thioredoxin reductase 98.2 1E-06 2.2E-11 92.1 5.3 57 233-290 223-279 (499)
125 PLN00093 geranylgeranyl diphos 98.2 9.4E-07 2E-11 90.9 5.0 35 3-37 38-72 (450)
126 PRK06185 hypothetical protein; 98.2 9.9E-07 2.1E-11 89.7 5.0 38 1-38 3-40 (407)
127 TIGR01292 TRX_reduct thioredox 98.2 1E-06 2.3E-11 85.4 5.0 40 5-45 1-40 (300)
128 COG1148 HdrA Heterodisulfide r 98.2 9.7E-07 2.1E-11 87.7 4.6 44 5-48 125-168 (622)
129 PLN02661 Putative thiazole syn 98.2 1.1E-06 2.4E-11 86.2 4.7 39 4-42 92-131 (357)
130 PF00890 FAD_binding_2: FAD bi 98.2 1E-06 2.2E-11 90.0 4.8 58 230-288 139-202 (417)
131 PRK08850 2-octaprenyl-6-methox 98.2 1.1E-06 2.3E-11 89.5 4.9 36 1-36 1-36 (405)
132 TIGR02023 BchP-ChlP geranylger 98.2 1.3E-06 2.9E-11 88.3 5.4 32 5-36 1-32 (388)
133 PRK12837 3-ketosteroid-delta-1 98.2 1.2E-06 2.6E-11 91.8 5.3 42 2-44 5-46 (513)
134 PF00732 GMC_oxred_N: GMC oxid 98.2 1.1E-06 2.3E-11 85.5 4.5 39 5-43 1-40 (296)
135 TIGR02028 ChlP geranylgeranyl 98.2 1.4E-06 3.1E-11 88.4 5.2 37 5-41 1-37 (398)
136 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.5E-06 3.2E-11 88.8 5.2 45 1-45 1-45 (454)
137 PRK14694 putative mercuric red 98.2 1.5E-06 3.2E-11 90.2 5.3 57 232-290 218-274 (468)
138 TIGR01988 Ubi-OHases Ubiquinon 98.2 1.4E-06 3.1E-11 87.7 4.9 55 233-288 107-162 (385)
139 PF04820 Trp_halogenase: Trypt 98.2 2E-05 4.4E-10 81.2 13.5 55 232-287 154-209 (454)
140 PRK07608 ubiquinone biosynthes 98.2 1.6E-06 3.5E-11 87.5 5.3 38 3-40 4-41 (388)
141 PRK12835 3-ketosteroid-delta-1 98.2 1.5E-06 3.3E-11 92.3 5.1 43 1-43 8-50 (584)
142 PRK08020 ubiF 2-octaprenyl-3-m 98.2 1.4E-06 3.1E-11 88.1 4.7 36 3-38 4-39 (391)
143 TIGR03315 Se_ygfK putative sel 98.2 1.7E-06 3.7E-11 95.7 5.5 42 4-45 537-578 (1012)
144 PRK12844 3-ketosteroid-delta-1 98.2 1.9E-06 4.1E-11 91.2 5.4 42 2-43 4-45 (557)
145 KOG1399 Flavin-containing mono 98.2 1.7E-06 3.7E-11 88.0 4.8 44 3-46 5-48 (448)
146 PRK08132 FAD-dependent oxidore 98.2 2.5E-06 5.5E-11 90.2 6.3 37 3-39 22-58 (547)
147 PLN02464 glycerol-3-phosphate 98.2 2.1E-06 4.5E-11 92.0 5.6 60 231-290 231-297 (627)
148 TIGR02053 MerA mercuric reduct 98.2 1.9E-06 4.1E-11 89.3 5.2 39 5-44 1-39 (463)
149 PTZ00058 glutathione reductase 98.2 2E-06 4.2E-11 90.7 5.3 42 3-45 47-88 (561)
150 PRK05714 2-octaprenyl-3-methyl 98.2 1.7E-06 3.7E-11 88.0 4.7 56 233-289 113-168 (405)
151 PRK12842 putative succinate de 98.2 2.2E-06 4.7E-11 91.2 5.5 42 3-44 8-49 (574)
152 PF06039 Mqo: Malate:quinone o 98.2 5.6E-05 1.2E-09 75.8 15.0 56 231-286 180-241 (488)
153 TIGR01813 flavo_cyto_c flavocy 98.1 2.2E-06 4.7E-11 88.3 5.2 57 232-288 130-191 (439)
154 PRK12779 putative bifunctional 98.1 2E-06 4.4E-11 95.7 5.3 41 4-44 306-346 (944)
155 PRK06184 hypothetical protein; 98.1 2.4E-06 5.3E-11 89.4 5.4 38 1-39 1-38 (502)
156 PRK06175 L-aspartate oxidase; 98.1 2.2E-06 4.7E-11 88.0 4.9 42 1-43 1-42 (433)
157 TIGR01790 carotene-cycl lycope 98.1 2.3E-06 5E-11 86.5 5.0 37 6-42 1-37 (388)
158 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 2.3E-06 5.1E-11 86.6 4.8 35 4-38 2-36 (390)
159 PRK12831 putative oxidoreducta 98.1 2.8E-06 6E-11 88.0 5.4 42 3-44 139-180 (464)
160 PRK06183 mhpA 3-(3-hydroxyphen 98.1 3.8E-06 8.2E-11 88.7 6.4 37 4-40 10-46 (538)
161 PRK14727 putative mercuric red 98.1 2.8E-06 6.1E-11 88.4 4.9 43 3-45 15-57 (479)
162 PRK07236 hypothetical protein; 98.1 3E-06 6.4E-11 85.7 5.0 35 4-38 6-40 (386)
163 TIGR01984 UbiH 2-polyprenyl-6- 98.1 2.9E-06 6.3E-11 85.5 4.7 56 232-288 105-161 (382)
164 PRK12839 hypothetical protein; 98.1 3.6E-06 7.9E-11 89.2 5.5 44 1-44 5-48 (572)
165 COG0492 TrxB Thioredoxin reduc 98.1 3.5E-06 7.5E-11 81.9 4.8 45 3-47 2-46 (305)
166 PRK05732 2-octaprenyl-6-methox 98.1 3.9E-06 8.4E-11 84.9 4.9 36 1-37 1-39 (395)
167 PRK06452 sdhA succinate dehydr 98.1 4.4E-06 9.6E-11 88.6 5.4 43 1-43 1-44 (566)
168 PRK07843 3-ketosteroid-delta-1 98.1 4.5E-06 9.7E-11 88.4 5.4 42 3-44 6-47 (557)
169 TIGR01989 COQ6 Ubiquinone bios 98.1 3.9E-06 8.5E-11 86.3 4.8 34 5-38 1-38 (437)
170 PLN02507 glutathione reductase 98.0 4.5E-06 9.7E-11 87.2 5.2 58 232-290 244-301 (499)
171 TIGR01423 trypano_reduc trypan 98.0 4.5E-06 9.8E-11 86.8 5.2 58 232-290 231-289 (486)
172 PRK06617 2-octaprenyl-6-methox 98.0 3.8E-06 8.3E-11 84.5 4.5 33 5-37 2-34 (374)
173 PRK06753 hypothetical protein; 98.0 4.2E-06 9.1E-11 84.1 4.7 35 6-40 2-36 (373)
174 PLN02463 lycopene beta cyclase 98.0 4.6E-06 9.9E-11 85.6 4.8 36 3-38 27-62 (447)
175 PRK07804 L-aspartate oxidase; 98.0 5.1E-06 1.1E-10 87.6 5.3 40 3-42 15-54 (541)
176 PRK09853 putative selenate red 98.0 5.3E-06 1.1E-10 91.6 5.6 43 3-45 538-580 (1019)
177 PRK08244 hypothetical protein; 98.0 4.7E-06 1E-10 87.1 5.0 36 4-39 2-37 (493)
178 PRK06126 hypothetical protein; 98.0 5.1E-06 1.1E-10 88.0 5.1 36 3-38 6-41 (545)
179 PRK02106 choline dehydrogenase 98.0 5E-06 1.1E-10 88.2 5.1 38 1-38 2-40 (560)
180 PRK07333 2-octaprenyl-6-methox 98.0 5.1E-06 1.1E-10 84.3 4.7 57 232-289 111-167 (403)
181 PRK09564 coenzyme A disulfide 98.0 4.1E-05 8.8E-10 78.9 11.4 57 232-290 191-247 (444)
182 PRK12769 putative oxidoreducta 98.0 6.2E-06 1.4E-10 89.1 5.4 42 3-44 326-367 (654)
183 PRK11445 putative oxidoreducta 98.0 5.6E-06 1.2E-10 82.6 4.7 35 4-39 1-35 (351)
184 PRK06834 hypothetical protein; 98.0 6.6E-06 1.4E-10 85.7 5.3 36 3-38 2-37 (488)
185 PF00743 FMO-like: Flavin-bind 98.0 6.2E-06 1.4E-10 86.4 5.1 41 5-45 2-42 (531)
186 PTZ00367 squalene epoxidase; P 98.0 5.8E-06 1.3E-10 87.2 4.9 35 3-37 32-66 (567)
187 COG3573 Predicted oxidoreducta 98.0 6.9E-06 1.5E-10 78.2 4.7 40 4-43 5-46 (552)
188 TIGR01316 gltA glutamate synth 98.0 7E-06 1.5E-10 84.7 5.2 42 3-44 132-173 (449)
189 TIGR01372 soxA sarcosine oxida 98.0 6.6E-06 1.4E-10 92.6 5.4 43 3-45 162-204 (985)
190 PRK08294 phenol 2-monooxygenas 98.0 6.9E-06 1.5E-10 88.1 5.2 38 1-38 29-67 (634)
191 TIGR01789 lycopene_cycl lycope 98.0 7.4E-06 1.6E-10 82.3 5.1 37 6-42 1-39 (370)
192 PRK06475 salicylate hydroxylas 98.0 8.1E-06 1.7E-10 83.0 5.4 35 5-39 3-37 (400)
193 PRK07538 hypothetical protein; 98.0 6.5E-06 1.4E-10 84.0 4.8 34 6-39 2-35 (413)
194 PLN02697 lycopene epsilon cycl 98.0 7.7E-06 1.7E-10 85.4 5.3 36 3-38 107-142 (529)
195 PLN02546 glutathione reductase 98.0 7.7E-06 1.7E-10 86.3 5.3 42 4-45 79-129 (558)
196 PRK12775 putative trifunctiona 98.0 7E-06 1.5E-10 92.2 5.2 42 3-44 429-470 (1006)
197 PTZ00139 Succinate dehydrogena 98.0 7.6E-06 1.7E-10 87.5 5.2 55 232-286 166-226 (617)
198 PRK10262 thioredoxin reductase 98.0 8.7E-06 1.9E-10 80.2 4.9 42 3-45 5-46 (321)
199 PRK07588 hypothetical protein; 97.9 7.6E-06 1.7E-10 82.8 4.6 34 5-38 1-34 (391)
200 COG2509 Uncharacterized FAD-de 97.9 0.0002 4.3E-09 71.4 14.2 57 231-288 172-229 (486)
201 KOG2614 Kynurenine 3-monooxyge 97.9 1E-05 2.3E-10 79.5 5.2 44 4-47 2-45 (420)
202 PRK08641 sdhA succinate dehydr 97.9 9.1E-06 2E-10 86.6 5.2 40 4-43 3-42 (589)
203 PRK12778 putative bifunctional 97.9 9.6E-06 2.1E-10 89.0 5.6 42 3-44 430-471 (752)
204 PRK15317 alkyl hydroperoxide r 97.9 9.1E-06 2E-10 85.4 5.1 40 3-44 210-249 (517)
205 PRK07803 sdhA succinate dehydr 97.9 9.2E-06 2E-10 87.1 5.1 39 4-42 8-46 (626)
206 PF05834 Lycopene_cycl: Lycope 97.9 9.6E-06 2.1E-10 81.6 4.9 34 6-39 1-36 (374)
207 PTZ00153 lipoamide dehydrogena 97.9 9.5E-06 2.1E-10 86.9 5.1 42 3-44 115-157 (659)
208 PRK12810 gltD glutamate syntha 97.9 1.1E-05 2.3E-10 83.8 5.4 41 4-44 143-183 (471)
209 PRK07395 L-aspartate oxidase; 97.9 9.1E-06 2E-10 85.8 4.9 55 232-286 134-194 (553)
210 PLN00128 Succinate dehydrogena 97.9 9.2E-06 2E-10 87.0 4.9 55 232-286 187-247 (635)
211 PRK09078 sdhA succinate dehydr 97.9 9.5E-06 2.1E-10 86.6 5.0 54 233-286 150-209 (598)
212 PRK07057 sdhA succinate dehydr 97.9 1.1E-05 2.4E-10 85.9 5.4 55 232-286 148-208 (591)
213 PRK07573 sdhA succinate dehydr 97.9 1E-05 2.2E-10 86.9 4.9 40 4-43 35-74 (640)
214 PLN02927 antheraxanthin epoxid 97.9 1.1E-05 2.4E-10 86.0 5.0 35 3-37 80-114 (668)
215 TIGR02462 pyranose_ox pyranose 97.9 1.2E-05 2.7E-10 83.9 5.2 39 5-43 1-39 (544)
216 PRK05335 tRNA (uracil-5-)-meth 97.9 1.3E-05 2.8E-10 80.7 5.1 37 5-41 3-39 (436)
217 PRK05868 hypothetical protein; 97.9 1.2E-05 2.5E-10 81.0 4.7 35 5-39 2-36 (372)
218 PLN02852 ferredoxin-NADP+ redu 97.9 1.4E-05 3.1E-10 82.5 5.4 42 4-45 26-69 (491)
219 PRK12814 putative NADPH-depend 97.9 1.3E-05 2.9E-10 86.4 5.3 41 4-44 193-233 (652)
220 PRK08626 fumarate reductase fl 97.9 1.3E-05 2.7E-10 86.4 5.1 43 1-43 1-44 (657)
221 TIGR03219 salicylate_mono sali 97.9 1.3E-05 2.9E-10 81.7 5.0 35 6-40 2-37 (414)
222 PLN02815 L-aspartate oxidase 97.9 1.3E-05 2.9E-10 85.1 4.9 39 4-43 29-67 (594)
223 PRK12809 putative oxidoreducta 97.9 1.6E-05 3.4E-10 85.7 5.4 42 3-44 309-350 (639)
224 PRK05945 sdhA succinate dehydr 97.9 1.3E-05 2.8E-10 85.3 4.7 55 232-287 135-195 (575)
225 TIGR01812 sdhA_frdA_Gneg succi 97.9 1.5E-05 3.2E-10 84.8 5.1 53 233-286 130-188 (566)
226 KOG0042 Glycerol-3-phosphate d 97.9 2.6E-05 5.7E-10 78.7 6.5 63 233-295 225-293 (680)
227 PRK11749 dihydropyrimidine deh 97.9 1.7E-05 3.6E-10 82.1 5.3 41 4-44 140-180 (457)
228 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.5E-05 3.2E-10 80.7 4.7 36 6-41 2-37 (433)
229 PRK06069 sdhA succinate dehydr 97.9 1.6E-05 3.4E-10 84.7 5.1 43 1-43 1-47 (577)
230 TIGR01318 gltD_gamma_fam gluta 97.8 1.9E-05 4E-10 81.9 5.4 42 3-44 140-181 (467)
231 TIGR03140 AhpF alkyl hydropero 97.8 1.7E-05 3.8E-10 83.2 5.2 39 4-44 212-250 (515)
232 TIGR00551 nadB L-aspartate oxi 97.8 1.7E-05 3.7E-10 82.7 5.1 56 232-288 128-188 (488)
233 COG2303 BetA Choline dehydroge 97.8 1.5E-05 3.2E-10 84.0 4.4 36 1-36 4-39 (542)
234 PTZ00306 NADH-dependent fumara 97.8 1.8E-05 4E-10 90.5 5.2 41 4-44 409-449 (1167)
235 PRK08205 sdhA succinate dehydr 97.8 2.1E-05 4.7E-10 83.7 5.1 55 232-286 140-203 (583)
236 PF01134 GIDA: Glucose inhibit 97.8 1.9E-05 4.1E-10 78.7 4.1 38 6-43 1-39 (392)
237 TIGR01438 TGR thioredoxin and 97.8 2.4E-05 5.3E-10 81.4 5.1 41 4-44 2-50 (484)
238 PRK06854 adenylylsulfate reduc 97.8 2.5E-05 5.3E-10 83.6 5.1 38 4-41 11-50 (608)
239 PRK06996 hypothetical protein; 97.8 2.7E-05 6E-10 79.0 5.0 36 3-38 10-49 (398)
240 PRK08071 L-aspartate oxidase; 97.8 2.6E-05 5.6E-10 81.7 4.8 39 4-43 3-41 (510)
241 COG3075 GlpB Anaerobic glycero 97.8 2.5E-05 5.5E-10 74.4 4.2 56 233-289 259-318 (421)
242 PRK06263 sdhA succinate dehydr 97.8 2.7E-05 5.8E-10 82.3 4.9 56 232-287 134-195 (543)
243 PTZ00188 adrenodoxin reductase 97.7 3.3E-05 7.1E-10 79.0 5.2 42 4-45 39-81 (506)
244 PRK08275 putative oxidoreducta 97.7 2.9E-05 6.3E-10 82.3 5.1 55 232-286 137-197 (554)
245 PF00070 Pyr_redox: Pyridine n 97.7 5.4E-05 1.2E-09 58.3 5.2 35 6-40 1-35 (80)
246 PRK09077 L-aspartate oxidase; 97.7 3.3E-05 7.2E-10 81.5 5.1 40 3-43 7-46 (536)
247 PRK09231 fumarate reductase fl 97.7 3E-05 6.5E-10 82.5 4.8 41 3-43 3-45 (582)
248 COG1053 SdhA Succinate dehydro 97.7 3.5E-05 7.6E-10 81.0 5.1 45 1-45 3-47 (562)
249 PRK12770 putative glutamate sy 97.7 4.5E-05 9.7E-10 76.2 5.4 42 3-44 17-58 (352)
250 TIGR01176 fum_red_Fp fumarate 97.7 3.6E-05 7.8E-10 81.8 4.8 40 4-43 3-44 (580)
251 TIGR01317 GOGAT_sm_gam glutama 97.7 4.5E-05 9.8E-10 79.4 5.3 41 4-44 143-183 (485)
252 PRK06912 acoL dihydrolipoamide 97.7 4.4E-05 9.6E-10 79.0 5.1 57 232-290 211-269 (458)
253 PRK08401 L-aspartate oxidase; 97.7 4.7E-05 1E-09 79.0 5.0 55 232-288 120-174 (466)
254 COG0493 GltD NADPH-dependent g 97.7 4E-05 8.6E-10 78.5 4.2 40 5-44 124-163 (457)
255 PF07992 Pyr_redox_2: Pyridine 97.6 5.4E-05 1.2E-09 68.8 4.6 33 6-38 1-33 (201)
256 PRK12771 putative glutamate sy 97.6 6.8E-05 1.5E-09 79.7 5.5 41 4-44 137-177 (564)
257 PRK06567 putative bifunctional 97.6 6.2E-05 1.4E-09 82.5 5.2 40 3-42 382-421 (1028)
258 KOG2415 Electron transfer flav 97.6 5.6E-05 1.2E-09 74.1 4.2 43 3-45 75-123 (621)
259 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.00059 1.3E-08 68.8 11.0 63 224-289 124-190 (381)
260 KOG0399 Glutamate synthase [Am 97.5 7.8E-05 1.7E-09 80.7 4.6 42 3-44 1784-1825(2142)
261 TIGR03452 mycothione_red mycot 97.5 8.8E-05 1.9E-09 76.6 4.9 56 233-290 211-266 (452)
262 PRK13984 putative oxidoreducta 97.5 9.7E-05 2.1E-09 79.2 5.4 42 3-44 282-323 (604)
263 PRK07846 mycothione reductase; 97.5 9.8E-05 2.1E-09 76.3 5.0 39 4-45 1-39 (451)
264 PRK07512 L-aspartate oxidase; 97.5 8.5E-05 1.8E-09 77.9 4.4 54 232-286 136-194 (513)
265 TIGR00136 gidA glucose-inhibit 97.5 0.00011 2.3E-09 77.3 5.0 38 5-42 1-38 (617)
266 TIGR01811 sdhA_Bsu succinate d 97.5 8.8E-05 1.9E-09 79.2 4.4 37 7-43 1-37 (603)
267 TIGR01810 betA choline dehydro 97.5 9.7E-05 2.1E-09 78.0 4.5 33 6-38 1-34 (532)
268 PRK07845 flavoprotein disulfid 97.5 0.00012 2.7E-09 75.9 5.1 58 232-290 218-275 (466)
269 PLN02785 Protein HOTHEAD 97.5 0.00012 2.7E-09 77.7 4.8 35 3-38 54-88 (587)
270 TIGR02061 aprA adenosine phosp 97.5 0.00014 3E-09 77.6 5.2 34 6-39 1-38 (614)
271 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00013 2.8E-09 80.2 4.8 34 6-39 2-37 (765)
272 PRK13800 putative oxidoreducta 97.4 0.00016 3.5E-09 80.8 5.3 35 4-38 13-47 (897)
273 KOG1335 Dihydrolipoamide dehyd 97.4 0.00017 3.6E-09 70.3 4.5 41 4-44 39-79 (506)
274 COG4716 Myosin-crossreactive a 97.4 0.0014 3E-08 63.8 10.1 41 5-45 23-67 (587)
275 KOG2853 Possible oxidoreductas 97.3 0.00024 5.2E-09 68.2 4.3 48 3-50 85-136 (509)
276 COG0029 NadB Aspartate oxidase 97.2 0.00032 7E-09 70.7 4.3 33 6-39 9-41 (518)
277 COG0445 GidA Flavin-dependent 97.2 0.00028 6.1E-09 71.9 3.9 36 1-36 1-36 (621)
278 KOG2404 Fumarate reductase, fl 97.1 0.00056 1.2E-08 65.2 4.5 39 6-44 11-49 (477)
279 PRK09897 hypothetical protein; 97.0 0.00088 1.9E-08 70.2 4.9 39 5-43 2-43 (534)
280 KOG1238 Glucose dehydrogenase/ 96.8 0.0012 2.6E-08 68.8 4.6 38 2-39 55-93 (623)
281 PRK09754 phenylpropionate diox 96.8 0.0014 2.9E-08 66.6 4.9 56 233-290 187-242 (396)
282 KOG2665 Predicted FAD-dependen 96.7 0.0011 2.4E-08 63.1 3.2 41 3-43 47-89 (453)
283 COG0446 HcaD Uncharacterized N 96.7 0.0017 3.6E-08 65.7 4.6 40 5-44 137-176 (415)
284 PTZ00318 NADH dehydrogenase-li 96.6 0.0024 5.2E-08 65.4 4.7 52 233-289 229-280 (424)
285 KOG2960 Protein involved in th 96.5 0.00099 2.1E-08 59.9 1.2 41 4-44 76-118 (328)
286 KOG2311 NAD/FAD-utilizing prot 96.5 0.0024 5.1E-08 64.1 3.9 34 3-36 27-60 (679)
287 PRK13512 coenzyme A disulfide 96.5 0.0031 6.8E-08 64.9 4.8 53 233-290 190-242 (438)
288 TIGR02352 thiamin_ThiO glycine 96.5 0.0083 1.8E-07 59.0 7.6 64 225-289 127-193 (337)
289 KOG4716 Thioredoxin reductase 96.4 0.003 6.6E-08 60.7 3.8 32 4-35 19-50 (503)
290 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0037 8E-08 60.0 3.5 36 5-40 4-39 (439)
291 KOG2852 Possible oxidoreductas 96.2 0.0027 5.9E-08 59.8 2.2 42 3-44 9-56 (380)
292 PF13454 NAD_binding_9: FAD-NA 96.2 0.0056 1.2E-07 53.5 3.9 35 8-43 1-41 (156)
293 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0073 1.6E-07 54.2 4.0 33 6-38 1-33 (180)
294 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0072 1.6E-07 52.9 3.8 32 6-37 1-32 (157)
295 KOG3855 Monooxygenase involved 96.0 0.0077 1.7E-07 59.6 4.3 35 4-38 36-74 (481)
296 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.0094 2E-07 53.7 4.0 33 6-38 2-34 (185)
297 TIGR03169 Nterm_to_SelD pyridi 95.8 0.0098 2.1E-07 59.5 4.5 53 233-290 192-244 (364)
298 KOG0405 Pyridine nucleotide-di 95.7 0.013 2.9E-07 56.7 4.5 42 3-44 19-60 (478)
299 KOG1800 Ferredoxin/adrenodoxin 95.7 0.016 3.4E-07 56.8 4.9 42 4-45 20-63 (468)
300 PRK09754 phenylpropionate diox 95.7 0.013 2.9E-07 59.4 4.7 39 5-43 145-183 (396)
301 PF02558 ApbA: Ketopantoate re 95.3 0.022 4.8E-07 49.2 4.4 31 7-37 1-31 (151)
302 PRK04965 NADH:flavorubredoxin 95.3 0.023 4.9E-07 57.3 5.0 56 233-290 184-240 (377)
303 COG1252 Ndh NADH dehydrogenase 95.3 0.023 5E-07 57.2 4.8 51 233-289 210-262 (405)
304 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.02 4.2E-07 56.1 4.1 33 6-38 4-36 (308)
305 PRK01438 murD UDP-N-acetylmura 95.2 0.024 5.3E-07 59.0 4.9 34 5-38 17-50 (480)
306 PRK04965 NADH:flavorubredoxin 95.2 0.026 5.6E-07 56.9 4.9 37 5-41 142-178 (377)
307 PRK07251 pyridine nucleotide-d 95.1 0.029 6.4E-07 57.7 5.2 38 5-42 158-195 (438)
308 PRK02705 murD UDP-N-acetylmura 95.0 0.025 5.4E-07 58.6 4.4 35 6-40 2-36 (459)
309 PF13434 K_oxygenase: L-lysine 95.0 0.017 3.7E-07 57.3 3.1 37 3-39 1-38 (341)
310 PRK05976 dihydrolipoamide dehy 95.0 0.027 6E-07 58.5 4.7 37 5-41 181-217 (472)
311 COG3634 AhpF Alkyl hydroperoxi 95.0 0.014 3.1E-07 56.4 2.2 39 3-43 210-248 (520)
312 PRK06249 2-dehydropantoate 2-r 94.9 0.036 7.8E-07 54.4 5.1 33 5-37 6-38 (313)
313 PRK07530 3-hydroxybutyryl-CoA 94.9 0.033 7.2E-07 54.0 4.7 37 1-37 1-37 (292)
314 PRK07819 3-hydroxybutyryl-CoA 94.9 0.033 7.1E-07 53.9 4.6 35 5-39 6-40 (286)
315 TIGR01350 lipoamide_DH dihydro 94.8 0.034 7.4E-07 57.5 4.8 37 5-41 171-207 (461)
316 PRK08293 3-hydroxybutyryl-CoA 94.7 0.035 7.5E-07 53.8 4.3 34 5-38 4-37 (287)
317 COG4529 Uncharacterized protei 94.6 0.044 9.5E-07 55.7 4.8 40 5-44 2-44 (474)
318 PRK14989 nitrite reductase sub 94.6 0.044 9.5E-07 60.9 5.3 58 233-290 188-246 (847)
319 PRK06130 3-hydroxybutyryl-CoA 94.6 0.044 9.5E-07 53.6 4.8 37 1-37 1-37 (311)
320 TIGR02053 MerA mercuric reduct 94.6 0.04 8.7E-07 57.1 4.7 37 5-41 167-203 (463)
321 PRK09260 3-hydroxybutyryl-CoA 94.6 0.035 7.7E-07 53.7 4.0 33 6-38 3-35 (288)
322 PRK07066 3-hydroxybutyryl-CoA 94.6 0.047 1E-06 53.6 4.8 34 5-38 8-41 (321)
323 TIGR01421 gluta_reduc_1 glutat 94.6 0.041 9E-07 56.8 4.7 37 5-41 167-203 (450)
324 PRK06370 mercuric reductase; V 94.5 0.047 1E-06 56.6 5.0 38 5-42 172-209 (463)
325 KOG0404 Thioredoxin reductase 94.5 0.056 1.2E-06 49.3 4.6 43 5-47 9-55 (322)
326 PRK13512 coenzyme A disulfide 94.4 0.045 9.7E-07 56.4 4.6 37 5-41 149-185 (438)
327 PRK06115 dihydrolipoamide dehy 94.4 0.049 1.1E-06 56.5 4.9 37 5-41 175-211 (466)
328 TIGR03862 flavo_PP4765 unchara 94.4 0.21 4.5E-06 50.1 9.0 61 222-286 75-138 (376)
329 PRK06912 acoL dihydrolipoamide 94.4 0.052 1.1E-06 56.2 4.9 37 5-41 171-207 (458)
330 PRK06467 dihydrolipoamide dehy 94.4 0.049 1.1E-06 56.6 4.7 38 5-42 175-212 (471)
331 PRK06416 dihydrolipoamide dehy 94.4 0.051 1.1E-06 56.3 4.8 37 5-41 173-209 (462)
332 PRK07846 mycothione reductase; 94.4 0.053 1.1E-06 56.1 4.9 36 5-40 167-202 (451)
333 PRK04148 hypothetical protein; 94.3 0.046 1E-06 46.2 3.5 33 5-38 18-50 (134)
334 PRK06292 dihydrolipoamide dehy 94.3 0.057 1.2E-06 55.9 5.0 37 5-41 170-206 (460)
335 PRK07818 dihydrolipoamide dehy 94.3 0.054 1.2E-06 56.2 4.8 37 5-41 173-209 (466)
336 PRK11064 wecC UDP-N-acetyl-D-m 94.2 0.053 1.1E-06 55.4 4.5 37 1-38 1-37 (415)
337 PRK05249 soluble pyridine nucl 94.1 0.067 1.5E-06 55.4 5.1 37 5-41 176-212 (461)
338 TIGR03385 CoA_CoA_reduc CoA-di 94.1 0.06 1.3E-06 55.2 4.7 36 5-40 138-173 (427)
339 PLN02545 3-hydroxybutyryl-CoA 94.0 0.069 1.5E-06 51.8 4.6 37 1-37 1-37 (295)
340 COG0569 TrkA K+ transport syst 94.0 0.061 1.3E-06 50.1 4.1 33 6-38 2-34 (225)
341 COG1249 Lpd Pyruvate/2-oxoglut 93.9 0.07 1.5E-06 54.9 4.7 36 6-41 175-210 (454)
342 KOG2304 3-hydroxyacyl-CoA dehy 93.9 0.061 1.3E-06 49.1 3.6 38 1-38 8-45 (298)
343 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.063 1.4E-06 52.0 4.1 34 5-38 4-37 (291)
344 PRK06522 2-dehydropantoate 2-r 93.9 0.07 1.5E-06 51.8 4.4 32 6-37 2-33 (304)
345 TIGR03452 mycothione_red mycot 93.8 0.079 1.7E-06 54.8 4.9 37 5-41 170-206 (452)
346 PRK06327 dihydrolipoamide dehy 93.8 0.083 1.8E-06 55.0 5.1 37 5-41 184-220 (475)
347 TIGR02374 nitri_red_nirB nitri 93.8 0.064 1.4E-06 59.4 4.4 55 234-290 184-239 (785)
348 TIGR03377 glycerol3P_GlpA glyc 93.7 0.19 4.1E-06 52.9 7.7 66 224-291 118-192 (516)
349 PRK14106 murD UDP-N-acetylmura 93.7 0.086 1.9E-06 54.4 4.9 34 4-37 5-38 (450)
350 PRK14618 NAD(P)H-dependent gly 93.6 0.099 2.2E-06 51.6 5.0 37 1-37 1-37 (328)
351 TIGR03140 AhpF alkyl hydropero 93.6 0.083 1.8E-06 55.6 4.6 36 5-40 353-388 (515)
352 PRK07845 flavoprotein disulfid 93.5 0.1 2.2E-06 54.1 5.2 38 5-42 178-215 (466)
353 COG1004 Ugd Predicted UDP-gluc 93.5 0.082 1.8E-06 52.4 4.1 32 6-37 2-33 (414)
354 COG0686 Ald Alanine dehydrogen 93.5 0.066 1.4E-06 51.2 3.2 43 5-47 169-219 (371)
355 PRK05708 2-dehydropantoate 2-r 93.4 0.1 2.2E-06 51.0 4.6 33 5-37 3-35 (305)
356 TIGR02374 nitri_red_nirB nitri 93.4 0.085 1.8E-06 58.4 4.6 37 5-41 141-177 (785)
357 PRK05808 3-hydroxybutyryl-CoA 93.4 0.094 2E-06 50.5 4.3 33 6-38 5-37 (282)
358 PRK12921 2-dehydropantoate 2-r 93.4 0.09 2E-06 51.1 4.2 30 6-35 2-31 (305)
359 PRK09564 coenzyme A disulfide 93.4 0.1 2.2E-06 53.7 4.8 37 5-41 150-186 (444)
360 PTZ00153 lipoamide dehydrogena 93.3 0.11 2.3E-06 56.2 5.0 37 5-41 313-349 (659)
361 PTZ00058 glutathione reductase 93.3 0.11 2.4E-06 55.2 4.9 38 4-41 237-274 (561)
362 cd01080 NAD_bind_m-THF_DH_Cycl 93.3 0.14 2.9E-06 45.4 4.8 33 4-36 44-77 (168)
363 PRK08229 2-dehydropantoate 2-r 93.2 0.1 2.2E-06 51.7 4.4 32 6-37 4-35 (341)
364 TIGR01424 gluta_reduc_2 glutat 93.2 0.11 2.4E-06 53.6 4.8 36 5-40 167-202 (446)
365 cd05292 LDH_2 A subgroup of L- 93.2 0.12 2.6E-06 50.6 4.7 33 6-38 2-36 (308)
366 TIGR03026 NDP-sugDHase nucleot 93.1 0.098 2.1E-06 53.4 4.1 33 6-38 2-34 (411)
367 PLN02507 glutathione reductase 93.0 0.12 2.6E-06 54.2 4.8 36 5-40 204-239 (499)
368 PRK10262 thioredoxin reductase 93.0 0.13 2.8E-06 50.5 4.7 36 5-40 147-182 (321)
369 PRK14989 nitrite reductase sub 92.9 0.11 2.5E-06 57.7 4.6 37 5-41 146-182 (847)
370 PRK08010 pyridine nucleotide-d 92.9 0.15 3.2E-06 52.5 5.3 37 5-41 159-195 (441)
371 TIGR01316 gltA glutamate synth 92.9 0.12 2.7E-06 53.3 4.6 34 5-38 273-306 (449)
372 PF01262 AlaDh_PNT_C: Alanine 92.8 0.17 3.7E-06 44.8 4.7 34 4-37 20-53 (168)
373 PRK06116 glutathione reductase 92.8 0.14 3.1E-06 52.8 4.8 36 5-40 168-203 (450)
374 PRK14619 NAD(P)H-dependent gly 92.7 0.16 3.4E-06 49.7 4.8 35 4-38 4-38 (308)
375 TIGR03143 AhpF_homolog putativ 92.7 0.13 2.9E-06 54.6 4.6 35 5-39 144-178 (555)
376 PRK15317 alkyl hydroperoxide r 92.6 0.14 3E-06 53.9 4.6 36 5-40 352-387 (517)
377 PRK07531 bifunctional 3-hydrox 92.5 0.15 3.4E-06 53.2 4.7 34 4-37 4-37 (495)
378 PRK00094 gpsA NAD(P)H-dependen 92.5 0.16 3.5E-06 49.8 4.6 32 6-37 3-34 (325)
379 TIGR01763 MalateDH_bact malate 92.4 0.18 3.9E-06 49.2 4.8 33 6-38 3-36 (305)
380 PLN02546 glutathione reductase 92.3 0.18 3.8E-06 53.6 4.9 37 5-41 253-289 (558)
381 COG3486 IucD Lysine/ornithine 92.3 0.16 3.5E-06 50.5 4.2 39 1-39 2-41 (436)
382 PRK13748 putative mercuric red 92.3 0.18 3.9E-06 53.6 4.9 33 5-37 271-303 (561)
383 PRK07417 arogenate dehydrogena 92.2 0.16 3.5E-06 48.8 4.2 32 6-37 2-33 (279)
384 PRK10157 putative oxidoreducta 92.2 0.37 7.9E-06 49.5 7.0 42 1-42 1-43 (428)
385 PF03446 NAD_binding_2: NAD bi 92.2 0.21 4.6E-06 43.9 4.5 32 6-37 3-34 (163)
386 PRK14694 putative mercuric red 92.1 0.2 4.4E-06 52.0 5.0 33 5-37 179-211 (468)
387 PRK12770 putative glutamate sy 92.0 0.17 3.8E-06 50.3 4.2 34 5-38 173-207 (352)
388 TIGR01292 TRX_reduct thioredox 91.9 0.2 4.4E-06 48.1 4.5 35 5-39 142-176 (300)
389 PRK14620 NAD(P)H-dependent gly 91.7 0.22 4.7E-06 49.1 4.5 32 6-37 2-33 (326)
390 PRK12831 putative oxidoreducta 91.7 0.24 5.1E-06 51.4 5.0 34 5-38 282-315 (464)
391 TIGR02354 thiF_fam2 thiamine b 91.6 0.26 5.7E-06 44.9 4.6 33 4-36 21-54 (200)
392 PRK14727 putative mercuric red 91.6 0.25 5.5E-06 51.4 5.1 33 5-37 189-221 (479)
393 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.5 0.2 4.2E-06 52.5 4.1 34 5-38 6-39 (503)
394 PLN02464 glycerol-3-phosphate 91.5 0.54 1.2E-05 50.7 7.5 41 3-43 70-110 (627)
395 PF01488 Shikimate_DH: Shikima 91.5 0.32 7E-06 41.3 4.7 33 4-36 12-45 (135)
396 PRK07121 hypothetical protein; 91.4 0.7 1.5E-05 48.3 8.2 42 3-44 19-60 (492)
397 PRK15057 UDP-glucose 6-dehydro 91.4 0.19 4.2E-06 50.7 3.8 32 6-38 2-33 (388)
398 COG1748 LYS9 Saccharopine dehy 91.4 0.25 5.4E-06 49.5 4.5 32 5-36 2-34 (389)
399 PRK01710 murD UDP-N-acetylmura 91.4 0.23 4.9E-06 51.5 4.4 32 6-37 16-47 (458)
400 PTZ00052 thioredoxin reductase 91.3 0.23 5E-06 52.1 4.4 32 5-36 183-214 (499)
401 TIGR01423 trypano_reduc trypan 91.3 0.25 5.5E-06 51.5 4.7 37 5-41 188-227 (486)
402 TIGR01438 TGR thioredoxin and 91.3 0.23 5E-06 51.8 4.4 31 6-36 182-212 (484)
403 PRK10015 oxidoreductase; Provi 91.3 0.67 1.5E-05 47.6 7.7 54 233-287 109-162 (429)
404 PF02254 TrkA_N: TrkA-N domain 91.2 0.37 8E-06 39.4 4.7 33 7-39 1-33 (116)
405 TIGR00518 alaDH alanine dehydr 91.2 0.27 5.9E-06 49.4 4.6 34 4-37 167-200 (370)
406 PRK08268 3-hydroxy-acyl-CoA de 91.1 0.27 5.8E-06 51.6 4.6 34 5-38 8-41 (507)
407 PF00890 FAD_binding_2: FAD bi 91.1 0.51 1.1E-05 48.0 6.6 36 6-41 1-36 (417)
408 TIGR01915 npdG NADPH-dependent 91.1 0.29 6.3E-06 45.3 4.4 32 6-37 2-34 (219)
409 cd05291 HicDH_like L-2-hydroxy 91.1 0.29 6.3E-06 47.8 4.6 33 6-38 2-36 (306)
410 PRK04176 ribulose-1,5-biphosph 91.0 0.82 1.8E-05 43.5 7.5 57 232-288 104-172 (257)
411 TIGR01813 flavo_cyto_c flavocy 91.0 0.8 1.7E-05 47.0 8.0 38 6-43 1-39 (439)
412 PTZ00082 L-lactate dehydrogena 91.0 0.36 7.9E-06 47.4 5.2 39 1-39 3-42 (321)
413 PRK04690 murD UDP-N-acetylmura 90.9 0.26 5.7E-06 51.2 4.4 34 5-38 9-42 (468)
414 PLN02353 probable UDP-glucose 90.9 0.28 6E-06 50.9 4.4 33 6-38 3-37 (473)
415 PRK11730 fadB multifunctional 90.8 0.24 5.1E-06 54.3 4.1 33 6-38 315-347 (715)
416 TIGR02032 GG-red-SF geranylger 90.7 0.76 1.6E-05 43.9 7.2 55 233-288 92-147 (295)
417 PRK15116 sulfur acceptor prote 90.7 0.38 8.2E-06 45.9 4.8 36 4-39 30-66 (268)
418 PF07156 Prenylcys_lyase: Pren 90.7 1.3 2.8E-05 44.4 8.8 111 164-287 69-185 (368)
419 TIGR01505 tartro_sem_red 2-hyd 90.7 0.26 5.7E-06 47.7 3.8 32 6-37 1-32 (291)
420 COG1250 FadB 3-hydroxyacyl-CoA 90.3 0.32 6.8E-06 47.3 4.0 32 5-36 4-35 (307)
421 TIGR02437 FadB fatty oxidation 90.3 0.28 6.1E-06 53.6 4.1 33 6-38 315-347 (714)
422 PRK11749 dihydropyrimidine deh 90.2 0.36 7.7E-06 50.0 4.6 34 5-38 274-308 (457)
423 PRK00421 murC UDP-N-acetylmura 90.2 0.32 7E-06 50.4 4.2 37 3-39 6-43 (461)
424 PRK06718 precorrin-2 dehydroge 90.0 0.47 1E-05 43.3 4.7 33 4-36 10-42 (202)
425 PRK06719 precorrin-2 dehydroge 90.0 0.5 1.1E-05 41.3 4.7 31 4-34 13-43 (157)
426 PTZ00318 NADH dehydrogenase-li 90.0 0.39 8.5E-06 49.2 4.6 37 6-42 175-225 (424)
427 COG1893 ApbA Ketopantoate redu 90.0 0.32 6.8E-06 47.6 3.7 33 6-38 2-34 (307)
428 cd01339 LDH-like_MDH L-lactate 89.9 0.37 8E-06 46.9 4.2 31 7-37 1-32 (300)
429 PRK11199 tyrA bifunctional cho 89.9 0.41 9E-06 48.1 4.6 33 5-37 99-132 (374)
430 TIGR01470 cysG_Nterm siroheme 89.8 0.5 1.1E-05 43.3 4.7 34 5-38 10-43 (205)
431 PF13738 Pyr_redox_3: Pyridine 89.7 0.66 1.4E-05 41.8 5.5 55 232-288 82-137 (203)
432 COG0771 MurD UDP-N-acetylmuram 89.6 0.4 8.7E-06 49.0 4.3 36 4-39 7-42 (448)
433 PRK03369 murD UDP-N-acetylmura 89.6 0.38 8.3E-06 50.2 4.3 33 5-37 13-45 (488)
434 PRK06223 malate dehydrogenase; 89.6 0.48 1E-05 46.3 4.7 34 5-38 3-37 (307)
435 PRK15461 NADH-dependent gamma- 89.6 0.4 8.6E-06 46.6 4.1 32 6-37 3-34 (296)
436 PF13241 NAD_binding_7: Putati 89.5 0.39 8.6E-06 38.6 3.4 34 4-37 7-40 (103)
437 PRK04308 murD UDP-N-acetylmura 89.5 0.55 1.2E-05 48.4 5.3 35 5-39 6-40 (445)
438 PRK12835 3-ketosteroid-delta-1 89.4 1.1 2.3E-05 48.1 7.5 57 232-288 213-274 (584)
439 TIGR02441 fa_ox_alpha_mit fatt 89.1 0.37 8.1E-06 52.9 3.8 34 5-38 336-369 (737)
440 KOG3851 Sulfide:quinone oxidor 89.0 0.37 8E-06 46.5 3.2 58 228-287 232-294 (446)
441 PRK02472 murD UDP-N-acetylmura 89.0 0.46 1E-05 48.9 4.3 34 5-38 6-39 (447)
442 PRK00683 murD UDP-N-acetylmura 88.9 0.5 1.1E-05 48.3 4.5 37 1-38 1-37 (418)
443 PRK03803 murD UDP-N-acetylmura 88.6 0.58 1.3E-05 48.3 4.8 38 1-38 3-40 (448)
444 PRK11559 garR tartronate semia 88.6 0.54 1.2E-05 45.5 4.3 32 6-37 4-35 (296)
445 PRK06849 hypothetical protein; 88.6 0.67 1.5E-05 46.8 5.1 39 1-39 1-40 (389)
446 TIGR02440 FadJ fatty oxidation 88.6 0.47 1E-05 51.9 4.1 33 6-38 306-339 (699)
447 TIGR01816 sdhA_forward succina 88.5 1.7 3.7E-05 46.3 8.3 53 233-286 120-178 (565)
448 cd01075 NAD_bind_Leu_Phe_Val_D 88.4 0.66 1.4E-05 42.3 4.5 33 5-37 29-61 (200)
449 PRK07333 2-octaprenyl-6-methox 88.4 1.6 3.5E-05 44.1 7.7 35 4-38 1-37 (403)
450 PRK09424 pntA NAD(P) transhydr 88.3 0.52 1.1E-05 49.2 4.2 34 4-37 165-198 (509)
451 PRK12778 putative bifunctional 88.3 0.52 1.1E-05 52.0 4.4 34 5-38 571-605 (752)
452 PTZ00142 6-phosphogluconate de 88.3 0.51 1.1E-05 48.9 4.0 34 5-38 2-35 (470)
453 PF13478 XdhC_C: XdhC Rossmann 88.3 0.62 1.3E-05 39.7 3.9 32 7-38 1-32 (136)
454 PRK12549 shikimate 5-dehydroge 88.3 0.62 1.3E-05 45.0 4.4 33 5-37 128-161 (284)
455 PRK07688 thiamine/molybdopteri 88.2 0.72 1.6E-05 45.7 4.9 33 4-36 24-57 (339)
456 PRK11154 fadJ multifunctional 88.2 0.49 1.1E-05 51.8 4.0 33 5-37 310-343 (708)
457 KOG3923 D-aspartate oxidase [A 88.1 0.29 6.3E-06 46.7 1.9 31 4-34 3-40 (342)
458 PRK08306 dipicolinate synthase 88.1 0.75 1.6E-05 44.7 4.8 34 4-37 152-185 (296)
459 cd05191 NAD_bind_amino_acid_DH 88.0 0.97 2.1E-05 35.0 4.6 32 4-35 23-55 (86)
460 PRK12839 hypothetical protein; 88.0 1.7 3.7E-05 46.3 7.9 58 232-289 214-276 (572)
461 PRK00141 murD UDP-N-acetylmura 88.0 0.6 1.3E-05 48.6 4.4 33 5-37 16-48 (473)
462 cd01065 NAD_bind_Shikimate_DH 87.8 0.85 1.8E-05 39.3 4.6 33 5-37 20-53 (155)
463 PRK01368 murD UDP-N-acetylmura 87.6 0.66 1.4E-05 48.0 4.4 32 5-37 7-38 (454)
464 cd00401 AdoHcyase S-adenosyl-L 87.6 0.71 1.5E-05 46.9 4.5 34 5-38 203-236 (413)
465 PRK07502 cyclohexadienyl dehyd 87.6 0.77 1.7E-05 44.8 4.7 33 5-37 7-41 (307)
466 TIGR00872 gnd_rel 6-phosphoglu 87.6 0.71 1.5E-05 44.9 4.4 32 6-37 2-33 (298)
467 PF00899 ThiF: ThiF family; I 87.6 0.81 1.8E-05 38.7 4.3 33 4-36 2-35 (135)
468 PRK12266 glpD glycerol-3-phosp 87.5 1.7 3.7E-05 45.6 7.5 57 232-290 155-217 (508)
469 PRK06481 fumarate reductase fl 87.5 1.6 3.4E-05 45.9 7.2 55 233-288 191-250 (506)
470 PRK12475 thiamine/molybdopteri 87.3 0.83 1.8E-05 45.3 4.7 34 4-37 24-58 (338)
471 cd01487 E1_ThiF_like E1_ThiF_l 87.3 0.89 1.9E-05 40.5 4.5 31 6-36 1-32 (174)
472 cd01078 NAD_bind_H4MPT_DH NADP 87.2 0.94 2E-05 40.9 4.7 32 5-36 29-61 (194)
473 TIGR02853 spore_dpaA dipicolin 87.2 0.8 1.7E-05 44.3 4.5 34 5-38 152-185 (287)
474 PRK02006 murD UDP-N-acetylmura 87.1 0.68 1.5E-05 48.5 4.2 33 5-37 8-40 (498)
475 PLN02695 GDP-D-mannose-3',5'-e 87.1 0.92 2E-05 45.5 5.0 37 1-37 18-55 (370)
476 PRK08401 L-aspartate oxidase; 87.0 2.2 4.7E-05 44.3 7.9 33 5-37 2-34 (466)
477 COG0287 TyrA Prephenate dehydr 86.9 0.6 1.3E-05 44.9 3.4 42 5-46 4-45 (279)
478 PRK00066 ldh L-lactate dehydro 86.8 1 2.3E-05 44.1 5.0 35 4-38 6-42 (315)
479 TIGR00507 aroE shikimate 5-deh 86.7 0.97 2.1E-05 43.2 4.7 33 5-37 118-150 (270)
480 TIGR00292 thiazole biosynthesi 86.7 2.7 5.8E-05 39.9 7.7 56 232-287 100-168 (254)
481 PRK09078 sdhA succinate dehydr 86.6 2 4.4E-05 46.1 7.6 40 3-42 11-50 (598)
482 COG0644 FixC Dehydrogenases (f 86.6 2.2 4.9E-05 43.1 7.6 56 233-288 96-151 (396)
483 PF00056 Ldh_1_N: lactate/mala 86.6 1.2 2.6E-05 38.1 4.8 33 6-38 2-37 (141)
484 PRK09496 trkA potassium transp 86.5 0.74 1.6E-05 47.4 4.1 33 6-38 2-34 (453)
485 PF01134 GIDA: Glucose inhibit 86.5 2.7 5.8E-05 42.4 7.8 54 233-287 96-150 (392)
486 TIGR01984 UbiH 2-polyprenyl-6- 86.4 2.2 4.7E-05 42.8 7.3 34 6-39 1-35 (382)
487 PTZ00117 malate dehydrogenase; 86.3 1.1 2.4E-05 44.1 4.9 34 4-37 5-39 (319)
488 PF03807 F420_oxidored: NADP o 86.3 1 2.3E-05 35.3 4.0 32 6-37 1-36 (96)
489 PRK06175 L-aspartate oxidase; 86.2 2.3 5E-05 43.7 7.5 55 232-287 128-187 (433)
490 TIGR02964 xanthine_xdhC xanthi 86.0 1.3 2.8E-05 41.8 5.0 36 3-38 99-134 (246)
491 PRK12844 3-ketosteroid-delta-1 85.9 2.4 5.2E-05 45.1 7.6 56 232-288 208-268 (557)
492 cd05311 NAD_bind_2_malic_enz N 85.9 1 2.3E-05 41.8 4.3 33 5-37 26-61 (226)
493 PRK13369 glycerol-3-phosphate 85.9 2.6 5.6E-05 44.2 7.8 58 232-291 155-217 (502)
494 PRK08275 putative oxidoreducta 85.8 2.7 5.9E-05 44.7 8.0 39 4-42 9-49 (554)
495 PRK09599 6-phosphogluconate de 85.8 1 2.2E-05 43.8 4.4 32 6-37 2-33 (301)
496 PLN02172 flavin-containing mon 85.8 0.82 1.8E-05 47.4 3.9 33 5-37 205-237 (461)
497 PRK05675 sdhA succinate dehydr 85.7 2.2 4.8E-05 45.5 7.3 55 232-286 126-186 (570)
498 PRK12842 putative succinate de 85.6 2.9 6.2E-05 44.7 8.1 57 232-289 214-275 (574)
499 PRK12548 shikimate 5-dehydroge 85.6 1.2 2.6E-05 43.2 4.7 33 5-37 127-160 (289)
500 COG2085 Predicted dinucleotide 85.6 1.2 2.5E-05 40.7 4.3 31 6-36 3-33 (211)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=2.6e-104 Score=790.33 Aligned_cols=436 Identities=59% Similarity=1.011 Sum_probs=373.3
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCC-CCCCCccCCCCCeEEecccce
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-DKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~iDlgp~~ 79 (445)
|+++|||||+|||+.++++|++||++|++|+|+|+|+||||.++|++++++++||... ..+++.++.+|+|+|||.|++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 9999999999999999999999999999999999999999999999999999999877 344567889999999999999
Q ss_pred eecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458 80 MMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159 (445)
Q Consensus 80 l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~ 159 (445)
++++|+|+++|+++++.+|+||+.++++|+|.+|++++||+++.|+|+++++++++||++|||++++.+|++..+.++++
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777777787
Q ss_pred ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458 160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239 (445)
Q Consensus 160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~ 239 (445)
++...++|.+++++|+|+++++++++|+++|+..+.+.+.|+.++++|+++|+.|+++| |++||+||+||+|||+|+||
T Consensus 161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence 77788999999999999999999999999999988888889999999999999999999 99999999999999999999
Q ss_pred HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceE
Q 036458 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQ 319 (445)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~ 319 (445)
|+||++||+|+||++|++|..+++|++.+|.++|++++|++||++|+|+|+++++.++++|+|||+++||+++++..+++
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~ 319 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ 319 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999877899999999999999999999999999877777899999999999999988778899
Q ss_pred EEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCcE
Q 036458 320 VILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHC 399 (445)
Q Consensus 320 i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (445)
|++|+.+.+++++|||+++|+++++||+|+|++|+||.+++++|+++|++++++|+||.++|+.+++.|+|++++..+||
T Consensus 320 IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~i 399 (438)
T PF00996_consen 320 IIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDNI 399 (438)
T ss_dssp EEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTSE
T ss_pred EecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCch
Q 036458 400 FISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLS 437 (445)
Q Consensus 400 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (445)
|||+|||+++|||++++||+++|+||+|+++||++++.
T Consensus 400 ~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~~ 437 (438)
T PF00996_consen 400 FISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRKH 437 (438)
T ss_dssp EE-----S-SBSHHHHHHHHHHHHHHHSS---------
T ss_pred EEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCCC
Confidence 99999999999999999999999999999999998764
No 2
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-96 Score=699.65 Aligned_cols=436 Identities=66% Similarity=1.109 Sum_probs=423.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCC-CCCCCccCCCCCeEEecccce
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-DKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~iDlgp~~ 79 (445)
|+++|||||+|||+.+|+++++||++|++|+|+|||++|||..+|+++.++++||+.. ..+|+.++.+|+|++|+.|++
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 8999999999999999999999999999999999999999999999999999999965 778999999999999999999
Q ss_pred eecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458 80 MMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159 (445)
Q Consensus 80 l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~ 159 (445)
++++++++++|+++++++||+|+.++++|+|.+|++++||.++.++|.+++|++++||++|||+.++.+|.+.++.+|++
T Consensus 81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~ 160 (440)
T KOG1439|consen 81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG 160 (440)
T ss_pred hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458 160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239 (445)
Q Consensus 160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~ 239 (445)
+++.+.+|+++++++++..+.++|++|++++..+++|++.|+.++++||++|.+|+++| |.+||+||+||+|||+|+||
T Consensus 161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa 239 (440)
T KOG1439|consen 161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA 239 (440)
T ss_pred cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence 88877899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceE
Q 036458 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQ 319 (445)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~ 319 (445)
|.++.+||+||||+++.+|..+++|++.++..++++..|+.+|++|+|+|+++++.+++.|++||++||++++++.+++|
T Consensus 240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q 319 (440)
T KOG1439|consen 240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ 319 (440)
T ss_pred HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence 99999999999999999999866899999999999999999999999999998888999999999999999999999999
Q ss_pred EEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCcE
Q 036458 320 VILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHC 399 (445)
Q Consensus 320 i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (445)
++||+.+++++++||++..|+++++||+|+|++|++|.+++.+||.++++++++|+||.+.|+.+++.|+|.+.+..+|+
T Consensus 320 iiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~~ 399 (440)
T KOG1439|consen 320 IIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESNI 399 (440)
T ss_pred EEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCch
Q 036458 400 FISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLS 437 (445)
Q Consensus 400 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (445)
|++.+||+|+|||+++.+++++|+|++|+++||+....
T Consensus 400 f~s~syDaT~HFet~~~dv~~i~~~~~~~~~~~~~~~~ 437 (440)
T KOG1439|consen 400 FISTSYDATTHFETTVYDVLDIYKRLTGKELDLSEDDE 437 (440)
T ss_pred EEEcccCCCCchHHHHHHHHHHHHhhcccccccccccc
Confidence 99999999999999999999999999999999987665
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=9.6e-95 Score=731.44 Aligned_cols=440 Identities=63% Similarity=1.099 Sum_probs=416.7
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM 80 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l 80 (445)
|+++|||||||||++||++|++||++|++|+|+|+|++|||+++|+++++++++|.++..+|+.++.+|.|++|+.|+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 89999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred ecCchhHHHhhhccccCceeeEEecceEEE-eCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458 81 MANGGLVRILIHTDVTKYLNFKAVDGSFVY-NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159 (445)
Q Consensus 81 ~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~-~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~ 159 (445)
+++|.++++|.++++.+|++|+.+++.|+| .+|+++++|+++.++|+++++++++|+++|||++++.++.+.++.+++.
T Consensus 81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 999999999999999999999999999998 8899999999999999999999999999999999999988766666776
Q ss_pred ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458 160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239 (445)
Q Consensus 160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~ 239 (445)
.+++.+|+.+|++++++++++++++.+++++...+.|.+.|+.+++.++++|+.|+++| |.+|++||+||+++|+|+|+
T Consensus 161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~ 239 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239 (443)
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence 66667999999999999999999999999998766677779999999999999999999 89999999999999999999
Q ss_pred HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCce
Q 036458 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSC 318 (445)
Q Consensus 240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~ 318 (445)
|.++++||+|+|+++|++|..++++++++|++ +|++++|+.||++++|+|.++++.++++|+|||+++|++++.+..++
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~ 319 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC 319 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence 99999999999999999999865677888875 88899999999999999988777889999999999999998877889
Q ss_pred EEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCc
Q 036458 319 QVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADH 398 (445)
Q Consensus 319 ~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 398 (445)
+|+||+.+++++++||++++|+++++||+|+|++|+||.+++++|+++|++++++|+++.++|+++++.|+|++++.++|
T Consensus 320 ~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 399 (443)
T PTZ00363 320 QIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDN 399 (443)
T ss_pred EEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCchhhhh
Q 036458 399 CFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASA 441 (445)
Q Consensus 399 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
||+|++||+++|||+++++|++||++|+|+++||++.++.+++
T Consensus 400 ~~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (443)
T PTZ00363 400 IFISKSYDATSHFESATEDVLDLYKRITGKDLDLTNIPETADE 442 (443)
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHhhCCcceecCCCccccC
Confidence 9999999999999999999999999999999999988876654
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-79 Score=572.77 Aligned_cols=427 Identities=44% Similarity=0.756 Sum_probs=397.5
Q ss_pred CCCc--ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccc
Q 036458 1 MDED--YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPK 78 (445)
Q Consensus 1 m~~~--~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~ 78 (445)
|++. |||||+||||.+|+.+++||.+|++|+|+|+|++||+..+|++..++.+||+.+...|...+..++|++|+.|+
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 6765 99999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred eeecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccc
Q 036458 79 FMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHE 158 (445)
Q Consensus 79 ~l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~ 158 (445)
+++++++++++|+++++.+||+|+++.++|+|.+|+++++|.++.++|.++++++++||++|||++|+.+|.+ .+.+++
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~ 159 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ 159 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 566677
Q ss_pred cccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHH
Q 036458 159 GLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAF 238 (445)
Q Consensus 159 ~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l 238 (445)
.+...+.++...+++|+++.....+++|+++++.+ ++.|+.++++||.+|++|++.| |.+||+||+||++||+|.|
T Consensus 160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF 235 (434)
T COG5044 160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235 (434)
T ss_pred hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence 66555566777889999999999999999999875 5679999999999999999999 9999999999999999999
Q ss_pred HHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccc---eEEEEEEeec-cCCCCCCC
Q 036458 239 ARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVG---KVARAICIMN-HPIPDTND 314 (445)
Q Consensus 239 ~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~---~~~r~i~i~~-~~i~~~~~ 314 (445)
||.++..||+|+||+++.+|... + .+.+|..++.+.+|..||+.++++|.+.+..+ ++.|++||++ +|.+++..
T Consensus 236 aRssav~GgtymLn~~i~ein~t-k-~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~ 313 (434)
T COG5044 236 ARSSAVYGGTYMLNQAIDEINET-K-DVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG 313 (434)
T ss_pred HHhhhccCceeecCcchhhhccc-c-ceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence 99999999999999999999763 3 24566778889999999999999988776655 7999999988 99988877
Q ss_pred CCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCC
Q 036458 315 SHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNH 394 (445)
Q Consensus 315 ~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 394 (445)
.++.+++||+.++.++++||+...|+++++||+|+|+.|++|..++.+||.++.+++++|+++.+.|+.+...|+|..+
T Consensus 314 ~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq~~ed- 392 (434)
T COG5044 314 LDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED- 392 (434)
T ss_pred cccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeeecccc-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCc
Q 036458 395 EADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDL 436 (445)
Q Consensus 395 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (445)
.+|++++.|+|++.|||+...+++.+|++++|.++.|..++
T Consensus 393 -~~~~~~~~s~De~~~~e~l~~~i~~~y~~~t~~~~vfd~~~ 433 (434)
T COG5044 393 -TNQVYLSDSVDESSHFESLTYEIKGIYKRFTGTPLVFDQRQ 433 (434)
T ss_pred -cceeEEeccccccccHHHHHHHHHHHHHhhcCCccccccCC
Confidence 48999999999999999999999999999999999997654
No 5
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-64 Score=477.04 Aligned_cols=429 Identities=28% Similarity=0.515 Sum_probs=335.9
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchh--------hhhhhh--cC----------C-C--
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLT--------QLWKRF--KG----------D-D-- 59 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~--------~~~~~~--~~----------~-~-- 59 (445)
++|||||||||+.+.++|++.||+|.+|+|+|+|+||||.|+||+.. .+.+.- .. + .
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~ 86 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP 86 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence 57999999999999999999999999999999999999999999987 332221 00 0 0
Q ss_pred CC----------------C-----------C-----ccCCCCCeEEecccceeecCchhHHHhhhccccCceeeEEecce
Q 036458 60 KP----------------P-----------E-----RLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGS 107 (445)
Q Consensus 60 ~~----------------~-----------~-----~~~~~~~~~iDlgp~~l~~~~~l~~~l~~~g~~~~l~~~~~~~~ 107 (445)
.+ | . ....+|.|++||.|+++++.|.++++|+++++.+|.||+.+++.
T Consensus 87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~ 166 (547)
T KOG4405|consen 87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI 166 (547)
T ss_pred CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence 00 1 0 13467999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhh-ccCccccccccCCCCCHHHHHHHcCCChhHHHHHHH
Q 036458 108 FVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE-EDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGH 186 (445)
Q Consensus 108 ~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~ 186 (445)
+.+..|++..||++|.++|.++.+++.|||.+|||+.++.+|. +.++..+.. ..+.||.||+++.++++.++.++.|
T Consensus 167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~--~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVE--FRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHH--hhcCcHHHHHHhcCCChhhHHHHHH
Confidence 9999999999999999999999999999999999999999984 233433333 3568999999999999999999999
Q ss_pred HhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC-c
Q 036458 187 ALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDG-K 265 (445)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g-~ 265 (445)
+++|...+ ...+.+++.+.++|+.|+|+| |++||+||.||.|||||+|||.||++||.|+|+.+|+.|..|.+. +
T Consensus 245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~ 320 (547)
T KOG4405|consen 245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLD 320 (547)
T ss_pred HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccccc
Confidence 99997643 246789999999999999999 999999999999999999999999999999999999999986322 2
Q ss_pred EE-EEEeCCeEEEcCEEEECCCCCCcccc---ccceEEEEEEeeccCCCCCCCCCceEE-EeCCCcCCCCCCEEEEEecC
Q 036458 266 VI-GVTSEGETAKCKKVVCDPSYLPDKVQ---KVGKVARAICIMNHPIPDTNDSHSCQV-ILPQKQLGRKSDMYLFCCSY 340 (445)
Q Consensus 266 ~~-~v~~~g~~~~ad~VI~~~~~~p~~~~---~~~~~~r~i~i~~~~i~~~~~~~~~~i-~~p~~~~~~~~~i~v~~~s~ 340 (445)
+. ++...|+++.|+++|++++|+|+.+. ..++++|+++|++.++..+......++ .+|....+ .-.+.+...++
T Consensus 321 ~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~epg-~~avr~iel~~ 399 (547)
T KOG4405|consen 321 CKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVEPG-AMAVRLIELCS 399 (547)
T ss_pred hhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccCcc-hhhHHHHHhhc
Confidence 22 34468999999999999999986542 235899999999999876542222232 24444322 22343445677
Q ss_pred CccccCCCcEEEEEEeeeCCCCcccccHhHHh-hcCC-----------cccceeeeeeccccCCCCCCCcEEEccCCCCC
Q 036458 341 AHNVAPNGQYIAFVSTEAETDNPEVELKPGID-LLGP-----------VDEIFFDTYDRFVPTNNHEADHCFISTSYDAT 408 (445)
Q Consensus 341 ~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~-~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 408 (445)
+++.||+|.|++|++... +....+.++..+. ++.. +|..+++..+.-.-.....+.|||+++++|..
T Consensus 400 ~t~tc~kg~yLvhlT~~~-s~~~~ed~~S~~~kif~t~~~~E~~kp~llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~n 478 (547)
T KOG4405|consen 400 STMTCPKGTYLVHLTCLS-SKTAREDLESDVVKIFTTEIKNETSKPRLLWALYFTMRDSSVISRSPLAENVYVCPPPDCN 478 (547)
T ss_pred ccccCccceEEEEeeccc-CcccccchhhhHHHHhhhhhccccccceehHHHHhhHHhhcccccCCCCCceEECCCCCCC
Confidence 889999999999998643 2334444554444 3321 12222222221111111247999999999999
Q ss_pred CccHhHHHHHHHHHHHhcCCCcccccCchhh
Q 036458 409 THFESTVQDVLEMYTKITGKAVDLSVDLSAA 439 (445)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (445)
+|++.+|++++++|++|+|.+-.|...++.+
T Consensus 479 L~y~~aVe~a~~Lf~k~~p~edf~p~~p~pe 509 (547)
T KOG4405|consen 479 LGYDEAVEQARTLFQKIFPSEDFLPRAPNPE 509 (547)
T ss_pred cChHHHHHHHHHHHHHhCChhhhCCCCCCHH
Confidence 9999999999999999999887776555433
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=9.7e-28 Score=250.35 Aligned_cols=319 Identities=16% Similarity=0.229 Sum_probs=208.8
Q ss_pred EEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCchh
Q 036458 7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGL 86 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~~l 86 (445)
|||||||++||+||++|+++|++|+||||++++||+++|++. .+|.||.|++++..++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~~~~ 60 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED--------------------DGFRFDTGPTVITMPEAL 60 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------CCeEEecCCeEEccccHH
Confidence 699999999999999999999999999999999999999998 569999999999866555
Q ss_pred HHHhhhccc--cCceeeEEecceE--EEeCCeEEEccCChHHHhhccccCch--hHHHHHHHHHHHHhhhc--------c
Q 036458 87 VRILIHTDV--TKYLNFKAVDGSF--VYNKGKIYKVPATDVEALKSPLMGLF--EKRRARKFFIYVQEYEE--------D 152 (445)
Q Consensus 87 ~~~l~~~g~--~~~l~~~~~~~~~--~~~~g~~~~vp~~~~~~~~~~l~~~~--~k~~~~~f~~~~~~~~~--------~ 152 (445)
.+++.++|+ .+++++...++.| .+.+|+.+.+|.+ .+.+...+..++ +...+.+|+..+..... .
T Consensus 61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566666764 5678888877665 3456777888877 555555444432 34455666554443211 0
Q ss_pred Ccccc----c------cccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCC
Q 036458 153 DPKSH----E------GLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGS 222 (445)
Q Consensus 153 ~~~~~----~------~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s 222 (445)
..... . .......|+.++++++..++.++.++.........+ ..+.++...+- .+ ..+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~-p~~~~~~~~l~---~~----~~~--~~ 209 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGN-PFRTPSIYALI---SA----LER--EW 209 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccC-cccchHHHHHH---HH----HHh--hc
Confidence 00000 0 001134788888887766777776653211121111 11223222211 11 112 12
Q ss_pred ceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC-------Cccc--
Q 036458 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL-------PDKV-- 292 (445)
Q Consensus 223 ~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~-------p~~~-- 292 (445)
..+||.+|++.++++|.+.++..|++|+++++|++|..+ ++++++|++ +|+++.||.||++.+.. +...
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~ 288 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR 288 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence 346899999999999999999999999999999999984 677778875 67889999999987642 1111
Q ss_pred ----cccc--eEEEEE----Eeec---cCCCCCCCCCceEEEeCC------------CcCCCCCCEEEEEec-CCccccC
Q 036458 293 ----QKVG--KVARAI----CIMN---HPIPDTNDSHSCQVILPQ------------KQLGRKSDMYLFCCS-YAHNVAP 346 (445)
Q Consensus 293 ----~~~~--~~~r~i----~i~~---~~i~~~~~~~~~~i~~p~------------~~~~~~~~i~v~~~s-~~~~~aP 346 (445)
+... +.+.+. +.++ .+++. ..++.+++.+ ..++.++.+|++.+| .|+..+|
T Consensus 289 ~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP 365 (502)
T TIGR02734 289 RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ---LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAP 365 (502)
T ss_pred cccccccccCCcCCeeeEEEEeeccccCcCCC---cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCC
Confidence 0000 111122 2234 23321 1234444422 123346789998876 5789999
Q ss_pred CCcEEEEEEeeeCC
Q 036458 347 NGQYIAFVSTEAET 360 (445)
Q Consensus 347 ~G~~~~~vst~~~~ 360 (445)
+|+.++++.++++.
T Consensus 366 ~G~~~~~~~~~~~~ 379 (502)
T TIGR02734 366 PGCENLYVLAPVPH 379 (502)
T ss_pred CCCccEEEEEeCCC
Confidence 99999988887653
No 7
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.96 E-value=6.9e-27 Score=243.32 Aligned_cols=319 Identities=14% Similarity=0.165 Sum_probs=191.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA- 82 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~- 82 (445)
+.||||||||++||+||++|+++|++|+|+||++++||+++|+++ ++|.||.|++++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~ 60 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR--------------------RGFTFDVGATQVAGL 60 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc--------------------CCEEEeecceEEEec
Confidence 358999999999999999999999999999999999999999998 56999999999864
Q ss_pred -Cch-hHHHhhhccccCceeeEEecceE--EEeCC-eEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhh-------
Q 036458 83 -NGG-LVRILIHTDVTKYLNFKAVDGSF--VYNKG-KIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE------- 150 (445)
Q Consensus 83 -~~~-l~~~l~~~g~~~~l~~~~~~~~~--~~~~g-~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~------- 150 (445)
++. +-+++.++|+... .+...++.+ .+.+| ..+.++.+ .+.+...+...+... .+|+..+....
T Consensus 61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d-~~~~~~~l~~~~p~~--~~~~~~~~~~~~~~~~~~ 136 (492)
T TIGR02733 61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHD-PDRWQKERERQFPGS--ERFWQLCSQLHQSNWRFA 136 (492)
T ss_pred CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecC-HHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHHHh
Confidence 333 4455556776521 133344433 44566 45667777 555554443333111 11222211100
Q ss_pred ccCc----cc---------------cccccCCCCCHHHHHHHcC--CChhHHHHHHHHhhccccCCCCCCcHHHHHHHHH
Q 036458 151 EDDP----KS---------------HEGLDLNKVTAREIISKYG--LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIK 209 (445)
Q Consensus 151 ~~~~----~~---------------~~~~~~~~~s~~~~~~~~~--l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~ 209 (445)
...+ .. .........|+.+++++++ -++.++.++.....++......+.++...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~--- 213 (492)
T TIGR02733 137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGAT--- 213 (492)
T ss_pred hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHH---
Confidence 0000 00 0000122478888888764 3556676664332222211110112221110
Q ss_pred HHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCC-----eEEEcCEEEE
Q 036458 210 LYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEG-----ETAKCKKVVC 283 (445)
Q Consensus 210 ~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g-----~~~~ad~VI~ 283 (445)
+..+.. .....+||+||+++|+++|++.++..|++|+++++|++|..+ ++++.+|. .+| +++.||.||+
T Consensus 214 --~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~ 288 (492)
T TIGR02733 214 --VLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVA 288 (492)
T ss_pred --Hhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEE
Confidence 001111 112246899999999999999999999999999999999984 66666665 344 6789999999
Q ss_pred CCCCC------Cc-----cc-cccc--eEE----EEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCcccc
Q 036458 284 DPSYL------PD-----KV-QKVG--KVA----RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVA 345 (445)
Q Consensus 284 ~~~~~------p~-----~~-~~~~--~~~----r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~a 345 (445)
+.++. +. .. +... +.+ ...+.++..........+...++.+ ...+|++..+.++..|
T Consensus 289 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~a 363 (492)
T TIGR02733 289 NLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRA 363 (492)
T ss_pred CCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCC
Confidence 87642 21 10 0010 111 1223345422111112233333322 2378998877778899
Q ss_pred CCCcEEEEEEeeeC
Q 036458 346 PNGQYIAFVSTEAE 359 (445)
Q Consensus 346 P~G~~~~~vst~~~ 359 (445)
|+|+++++++++++
T Consensus 364 P~G~~~l~~~~~~~ 377 (492)
T TIGR02733 364 PQGEATLIASSFTD 377 (492)
T ss_pred CCCceEEEEEcCCC
Confidence 99999998888764
No 8
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=4.7e-27 Score=243.06 Aligned_cols=252 Identities=22% Similarity=0.296 Sum_probs=157.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA 82 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~ 82 (445)
+.+||||||||++||+||++||++|++|+|||||+++||+++|+++ .+|.||+||+++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~--------------------~Gf~fd~G~~~~~~ 61 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL--------------------DGFRFDTGPSWYLM 61 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec--------------------cceEeccCcceeec
Confidence 3699999999999999999999999999999999999999999998 46999999998875
Q ss_pred Cc--hhHHHhhhccccCceeeEEecceE-E-EeCCeEEEccCChHHHhhccccCc--hhHHHHHHHHHHHHh-hhcc---
Q 036458 83 NG--GLVRILIHTDVTKYLNFKAVDGSF-V-YNKGKIYKVPATDVEALKSPLMGL--FEKRRARKFFIYVQE-YEED--- 152 (445)
Q Consensus 83 ~~--~l~~~l~~~g~~~~l~~~~~~~~~-~-~~~g~~~~vp~~~~~~~~~~l~~~--~~k~~~~~f~~~~~~-~~~~--- 152 (445)
.. ++++.|.. .....+++...++.+ + +.+|....+..+ .+.+...+... .+...+++++..+.+ ++..
T Consensus 62 ~~~~~~~~~l~~-l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 62 PDPGPLFRELGN-LDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred CchHHHHHHhcc-CcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 43 44444443 233347777766666 3 345778888877 44444333322 344455555553332 1100
Q ss_pred C--cccccc---cc----------CCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhh
Q 036458 153 D--PKSHEG---LD----------LNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLAR 217 (445)
Q Consensus 153 ~--~~~~~~---~~----------~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~ 217 (445)
. +..... .. ....+..+++..+--++.++..+.... ++.. ..-.++. ++- .++. ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~-~~~~-~~p~~~~--a~~---~~~~-~~~ 211 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSA-VYGG-APPSTPP--ALY---LLLS-HLG 211 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHH-HhcC-CCCCchh--HHH---HHHH-Hhc
Confidence 0 000000 00 011233333433311223333222221 1110 0001121 111 1111 111
Q ss_pred ccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458 218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY 287 (445)
Q Consensus 218 ~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~ 287 (445)
+ .....||+||++.|+++|++.++++||+|+++++|++|.. ++|+.+++++ +|+.+++|.||++.++
T Consensus 212 ~--~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 212 L--SGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred c--cCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 1 2234699999999999999999999999999999999999 5777666664 5568999999998765
No 9
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=4.8e-26 Score=236.86 Aligned_cols=322 Identities=18% Similarity=0.232 Sum_probs=201.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN- 83 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~- 83 (445)
|||||||+|++||++|.+|+++|++|+||||++++||++++++. .||.||.|++++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~fd~g~~~~~~~~ 60 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER--------------------EGYRFDVGASMIFGFG 60 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc--------------------CCEEEEecchhheecC
Confidence 79999999999999999999999999999999999999999988 569999999997531
Q ss_pred -----chhHHHhhhccccCceeeEEecceE--EEeCCeEEEccCChHHHhhccccCch--hHHHHHHHHHHHHhhhc---
Q 036458 84 -----GGLVRILIHTDVTKYLNFKAVDGSF--VYNKGKIYKVPATDVEALKSPLMGLF--EKRRARKFFIYVQEYEE--- 151 (445)
Q Consensus 84 -----~~l~~~l~~~g~~~~l~~~~~~~~~--~~~~g~~~~vp~~~~~~~~~~l~~~~--~k~~~~~f~~~~~~~~~--- 151 (445)
..+.+.+...+. .+++...+..+ .+.+|....++.+ .+.+...+...+ +...+.+|+..+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 137 (493)
T TIGR02730 61 DKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHRE-YDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN 137 (493)
T ss_pred CcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecC-HHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 123334443442 24444333323 3456767788877 666666654443 44556676665443110
Q ss_pred -c------Ccccc------------ccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHH
Q 036458 152 -D------DPKSH------------EGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYA 212 (445)
Q Consensus 152 -~------~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~ 212 (445)
. .+... ........|+.++++++..++.++.++.............+.|+...+.. +
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~---~- 213 (493)
T TIGR02730 138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMV---F- 213 (493)
T ss_pred hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHh---h-
Confidence 0 00000 00001236777888887778888876643222111111112233322211 1
Q ss_pred HHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC---
Q 036458 213 ESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL--- 288 (445)
Q Consensus 213 ~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~--- 288 (445)
..+ .....+||.+|+++|+++|.+.++.+|++|+++++|++|.. +++++.+|++ +|++++||.||++++.+
T Consensus 214 ---~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 214 ---SDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred ---ccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 111 11234689999999999999999999999999999999998 4678888875 78889999999987643
Q ss_pred ----Ccc-c--------cccc---eEEEEEEeeccCCCCCCCCCceEEEeCCC-c-CCCCCCEEEEEec-CCccccCCCc
Q 036458 289 ----PDK-V--------QKVG---KVARAICIMNHPIPDTNDSHSCQVILPQK-Q-LGRKSDMYLFCCS-YAHNVAPNGQ 349 (445)
Q Consensus 289 ----p~~-~--------~~~~---~~~r~i~i~~~~i~~~~~~~~~~i~~p~~-~-~~~~~~i~v~~~s-~~~~~aP~G~ 349 (445)
|.. . +... .....-+.++.+..... ...+.++++.- . ....+.+|++.++ .|++++|+|+
T Consensus 289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~ 367 (493)
T TIGR02730 289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPG-TECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH 367 (493)
T ss_pred HHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCC-CCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence 211 0 0000 11112223444332111 12223444421 1 1235678998876 5789999999
Q ss_pred EEEEEEeeeC
Q 036458 350 YIAFVSTEAE 359 (445)
Q Consensus 350 ~~~~vst~~~ 359 (445)
+++++.++.+
T Consensus 368 ~~i~~~~~~~ 377 (493)
T TIGR02730 368 HIIHTFTPSS 377 (493)
T ss_pred EEEEEecCCC
Confidence 9988777643
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.94 E-value=3.9e-25 Score=221.60 Aligned_cols=380 Identities=16% Similarity=0.224 Sum_probs=240.0
Q ss_pred cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
.|+|||||++||+||+.|+++| .+|+|||+.++.||..+|+.. .+|.||.||+.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~--------------------~G~~~e~G~~~f~~~ 61 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI--------------------DGFLFERGPHHFLAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee--------------------CCEEEeechhheecc
Confidence 5899999999999999999999 999999999999999999987 569999999988765
Q ss_pred -chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccC
Q 036458 84 -GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDL 162 (445)
Q Consensus 84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~ 162 (445)
..+++++.++|+.+.+.+......|+|.+|+++++|... ++.-+....-++..+.++ +.++.. ++.+. ..
T Consensus 62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~~~~~~~---~~~~~~--~~~~~--~~ 132 (444)
T COG1232 62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLSSEAGLARA---LQEFIR--PKSWE--PK 132 (444)
T ss_pred hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccc--eeecCCccccchhHHHHH---HHhhhc--ccCCC--CC
Confidence 689999999999988887766667899999999999773 333332222112222222 222211 11111 22
Q ss_pred CCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHH----HHHHHHHHhhhc-----c----CCCceEEe
Q 036458 163 NKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVK----RIKLYAESLARF-----Q----GGSPYIYP 227 (445)
Q Consensus 163 ~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~----~i~~~~~s~~~~-----~----g~s~~~~p 227 (445)
.+.++.+|++++ +.+++.+ ++...+ +.+..+. .+-++..++. +.+.|...+..+ . ....|.++
T Consensus 133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~-~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA-DKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH-HHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 568999999754 4555554 443332 3333211 0112221111 112222221100 0 01257788
Q ss_pred CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC------Ccc-----ccc--
Q 036458 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL------PDK-----VQK-- 294 (445)
Q Consensus 228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~------p~~-----~~~-- 294 (445)
++|++.|++++++.+... ++++++|+.|.++ ......+..+|+.+.||.||++.+.. ++. .+.
T Consensus 211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~ 286 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQ 286 (444)
T ss_pred CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhcc
Confidence 999999999999887765 9999999999984 44445566788899999999986532 110 011
Q ss_pred cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEE-Eec-CCccccCCCcEEEEEEeeeCCCC------cccc
Q 036458 295 VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLF-CCS-YAHNVAPNGQYIAFVSTEAETDN------PEVE 366 (445)
Q Consensus 295 ~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~-~~s-~~~~~aP~G~~~~~vst~~~~~~------~~~~ 366 (445)
...+..++..++++ .+...++.+++.+|..... +-.+ .+| .-+...|+|+.++++....++++ .|+.
T Consensus 287 ~~s~~~vv~~~~~~-~~~~~~~~~g~~iad~~~~----~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~ 361 (444)
T COG1232 287 YTSVVTVVVGLDEK-DNPALPDGYGLLIADDDPY----ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEEL 361 (444)
T ss_pred ccceEEEEEEeccc-cccCCCCceEEEEecCCCc----ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHH
Confidence 12344555556654 1112245678888865421 2222 233 45778999999999887665433 3455
Q ss_pred cHhHHhhcC---Cc--ccceeeeee------ccc--------cCCCCCC---CcEEEccCCCCCCccHhHHHHHHHHHHH
Q 036458 367 LKPGIDLLG---PV--DEIFFDTYD------RFV--------PTNNHEA---DHCFISTSYDATTHFESTVQDVLEMYTK 424 (445)
Q Consensus 367 l~~~~~~l~---~~--~~~~~~~~~------~~~--------~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 424 (445)
++.+++-|. .+ .+.|+.+.. +|+ +.....+ .+|.+++++......-+|+......=++
T Consensus 362 ~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~ 441 (444)
T COG1232 362 VAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQ 441 (444)
T ss_pred HHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHH
Confidence 555555332 22 222333221 232 2222233 7999998888778888999888775544
Q ss_pred h
Q 036458 425 I 425 (445)
Q Consensus 425 ~ 425 (445)
+
T Consensus 442 l 442 (444)
T COG1232 442 L 442 (444)
T ss_pred h
Confidence 3
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.94 E-value=3e-24 Score=221.86 Aligned_cols=382 Identities=13% Similarity=0.138 Sum_probs=227.7
Q ss_pred cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~ 79 (445)
..||+|||||++||+||+.|+++ |++|+|+|+++++||++.|.+. .||.+|+|+++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~--------------------~g~~~e~G~~~ 61 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE--------------------DGYLIERGPDS 61 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEee--------------------CCEEEecCccc
Confidence 46999999999999999999999 9999999999999999999876 46999999999
Q ss_pred eecCc-hhHHHhhhccccCceeeEEecceEEEeC-CeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccc
Q 036458 80 MMANG-GLVRILIHTDVTKYLNFKAVDGSFVYNK-GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSH 157 (445)
Q Consensus 80 l~~~~-~l~~~l~~~g~~~~l~~~~~~~~~~~~~-g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~ 157 (445)
++... .+.+++.++|+..++.+......|++.+ |+.+++|.+..+.+...+.++.++.+.. +.. +. +..
T Consensus 62 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~---~~---~~~- 132 (462)
T TIGR00562 62 FLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAG--MDF---IR---PAS- 132 (462)
T ss_pred cccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhh--hhh---cc---CCC-
Confidence 98654 4888888899876654322334566665 8888999876666666666766553322 111 11 110
Q ss_pred ccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHH-------Hh------------h
Q 036458 158 EGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAE-------SL------------A 216 (445)
Q Consensus 158 ~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~-------s~------------~ 216 (445)
...++|+.||+++. +.+.+.+ ++.... ..+..+ ..+.++..+++++..... .+ .
T Consensus 133 ---~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 207 (462)
T TIGR00562 133 ---PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGD-PSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQ 207 (462)
T ss_pred ---CCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCC-HHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccc
Confidence 11248999999865 4454443 333332 222221 111233333333321110 00 0
Q ss_pred hcc-C-CCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC-----
Q 036458 217 RFQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL----- 288 (445)
Q Consensus 217 ~~~-g-~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~----- 288 (445)
.|. + +..+.++.+|+++|++++++.+. .++|++|++|++|..+ ++++. |+ .+|++++||+||++.+..
T Consensus 208 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~l 283 (462)
T TIGR00562 208 LTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNYT-LELDNGVTVETDSVVVTAPHKAAAGL 283 (462)
T ss_pred ccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcEE-EEECCCcEEEcCEEEECCCHHHHHHH
Confidence 110 1 12256789999999999987664 3789999999999884 44443 44 467789999999986531
Q ss_pred -Cc---cc----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEe-cCCccccCCCcEEEEEEee
Q 036458 289 -PD---KV----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCC-SYAHNVAPNGQYIAFVSTE 357 (445)
Q Consensus 289 -p~---~~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~-s~~~~~aP~G~~~~~vst~ 357 (445)
|. .. .. ...+....+.++++... .....+.+++|.... ...+-+... +..+..+|+|..++.+...
T Consensus 284 l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~-~~~~~~g~l~~~~~~--~~~~~~i~~s~~~p~~~p~g~~~l~~~~~ 360 (462)
T TIGR00562 284 LSELSNSASSHLDKIHSPPVANVNLGFPEGSVD-GELEGFGFLISRSSK--FAILGCIFTSKLFPNRAPPGKTLLTAYIG 360 (462)
T ss_pred hcccCHHHHHHHhcCCCCceEEEEEEEchHHcC-CCCCceEEEccCCCC--CceEEEEEEccccCCcCCCCcEEEEEEeC
Confidence 21 11 11 12344444555554211 112345555664431 112222223 3346778999877644332
Q ss_pred eCC------CCcccccHhHHhhcC---Cccc--ceee---eee---ccccC--------CC---CCCCcEEEccCCCCCC
Q 036458 358 AET------DNPEVELKPGIDLLG---PVDE--IFFD---TYD---RFVPT--------NN---HEADHCFISTSYDATT 409 (445)
Q Consensus 358 ~~~------~~~~~~l~~~~~~l~---~~~~--~~~~---~~~---~~~~~--------~~---~~~~~~~~~~~~d~~~ 409 (445)
... .++++.++.+++-|. .+.. .+.. |.. .|.+- .. ....+|+++.++-.+.
T Consensus 361 g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~ 440 (462)
T TIGR00562 361 GATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGV 440 (462)
T ss_pred CCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCC
Confidence 111 122333444444332 1211 1211 111 12111 00 1125999999998888
Q ss_pred ccHhHHHHHHHHHHHhc
Q 036458 410 HFESTVQDVLEMYTKIT 426 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (445)
.+|+|+...+++-+++.
T Consensus 441 ~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 441 GIPDCIDQGKAAASDVL 457 (462)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999988874
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=3.3e-24 Score=219.52 Aligned_cols=248 Identities=22% Similarity=0.305 Sum_probs=167.1
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-Cc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NG 84 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~ 84 (445)
+|||||||++||+||+.|+++|++|+|+|+++++||++.|++. ++|.+|.|+|++.. ..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~--------------------~g~~~d~g~~~~~~~~~ 60 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEF--------------------GGLPIERFYHHIFKSDE 60 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCcchhhhhhhhccccH
Confidence 5999999999999999999999999999999999999999887 46999999998875 45
Q ss_pred hhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCC
Q 036458 85 GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNK 164 (445)
Q Consensus 85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 164 (445)
++.+++.++|+...+.+...... ++.+|+.++++.. .+.+....+++.++.++......... ..... ..+.
T Consensus 61 ~~~~l~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~ 131 (434)
T PRK07233 61 ALLELLDELGLEDKLRWRETKTG-YYVDGKLYPLGTP-LELLRFPHLSLIDKFRLGLLTLLARR-----IKDWR--ALDK 131 (434)
T ss_pred HHHHHHHHcCCCCceeeccCceE-EEECCeEecCCCH-HHHHcCCCCCHHHHHHhHHHHHhhhh-----ccccc--cccc
Confidence 77888888998766555442222 3446666655422 44444444555554333222111111 00011 2346
Q ss_pred CCHHHHHHHcCCChhHHHHHHHHhh-ccccCCCCCCcHHHHHHHHHHHHHHhhhccC-CCceEEeCCCcchHHHHHHHHH
Q 036458 165 VTAREIISKYGLEDDTIDFIGHALA-LHINDSYLEEPAMDFVKRIKLYAESLARFQG-GSPYIYPLYGLGELPQAFARLS 242 (445)
Q Consensus 165 ~s~~~~~~~~~l~~~~~~~i~~~~~-l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g-~s~~~~p~gG~~~L~q~l~r~~ 242 (445)
+|+.+|++++..++....++...+. ++.. ...+.++...+.++..+.. ..+.. ...+.||++|++.|+++|.+.+
T Consensus 132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~l~~~l 208 (434)
T PRK07233 132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGD-YADDVSAAWLWSRIKRRGN--RRYSLFGEKLGYLEGGFATLIDALAEAI 208 (434)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhcccCC-CccccCHHHHHHHHhhhhc--cccccCCceEeccCCCHHHHHHHHHHHH
Confidence 8999999876544444444433322 2221 1113355555544433211 11100 2246799999999999999999
Q ss_pred HHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458 243 AVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS 286 (445)
Q Consensus 243 ~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~ 286 (445)
...|++|+++++|++|..+ +++++++..+++++.||+||++.+
T Consensus 209 ~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p 251 (434)
T PRK07233 209 EARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAP 251 (434)
T ss_pred HhcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCC
Confidence 9999999999999999984 566666777888999999999865
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.93 E-value=1.7e-23 Score=216.38 Aligned_cols=380 Identities=10% Similarity=0.136 Sum_probs=218.3
Q ss_pred cEEEECCChhHHHHHHHhhhC------CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458 6 DVIVLGTGLKECILSGVLSVD------GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~------G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~ 79 (445)
+|+|||||++||+||+.|+++ |++|+|||+++++||++.|.+. .+|.+|+|+++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~--------------------~g~~~e~G~~~ 62 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--------------------KDFIMESGADS 62 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEee--------------------CCEEEecCcHH
Confidence 699999999999999999986 3799999999999999999886 46999999999
Q ss_pred eecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCC--------hHHHhhccccCchhHHHHHHHHHHHHhhh
Q 036458 80 MMAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPAT--------DVEALKSPLMGLFEKRRARKFFIYVQEYE 150 (445)
Q Consensus 80 l~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~--------~~~~~~~~l~~~~~k~~~~~f~~~~~~~~ 150 (445)
++.. ..+.+++.++|+.+++.+..-...|+|.+|..+++|.+ ..+.+...++++..|. ..+.++-
T Consensus 63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~ 136 (463)
T PRK12416 63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKI------VALKDFI 136 (463)
T ss_pred HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHH------Hhhhhhc
Confidence 9754 46778888899887655544445677777777777644 2223333333332221 1111111
Q ss_pred ccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhh-----------h
Q 036458 151 EDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLA-----------R 217 (445)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~-----------~ 217 (445)
. +. .. ..++.|+.+|+++. +.++..+ ++...+ +++..+ ..+.++...+..+..+....+ .
T Consensus 137 ~--~~--~~-~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~-~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 209 (463)
T PRK12416 137 T--KN--KE-FTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGK-LNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ 209 (463)
T ss_pred c--CC--CC-CCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCC-cccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc
Confidence 1 11 00 12468999999865 4454443 343332 223221 112233223333222211110 0
Q ss_pred --ccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC------
Q 036458 218 --FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL------ 288 (445)
Q Consensus 218 --~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~------ 288 (445)
..++..+.++++|++.|+++|++.+.. ++|++|++|++|..+ ++++ .|+ .+|+++.||.||++.+..
T Consensus 210 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll 285 (463)
T PRK12416 210 FQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPHDIAETLL 285 (463)
T ss_pred cCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCHHHHHhhc
Confidence 013345778999999999999887643 689999999999985 4444 454 477789999999986421
Q ss_pred --Cc---cccc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecC--CccccCCCcEEEEEEeee-
Q 036458 289 --PD---KVQK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSY--AHNVAPNGQYIAFVSTEA- 358 (445)
Q Consensus 289 --p~---~~~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~--~~~~aP~G~~~~~vst~~- 358 (445)
|. .... ...+....+.++++..... ...+.+++|+.. +. .+--+..++ -+..+|++..++.+..-.
T Consensus 286 ~~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~g~G~l~~~~~-~~--~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~ 361 (463)
T PRK12416 286 QSNELNEQFHTFKNSSLISIYLGFDILDEQLP-ADGTGFIVTENS-DL--HCDACTWTSRKWKHTSGKQKLLVRMFYKST 361 (463)
T ss_pred CCcchhHHHhcCCCCceEEEEEEechhhcCCC-CCceEEEeeCCC-CC--eEEEEEeecCCCCCcCCCCeEEEEEEeCCC
Confidence 11 0111 1233334445554422111 234555666442 11 111112221 234567666655443210
Q ss_pred -C-----CCCccccc-HhHH---h-hcCCccc-cee---eee---eccccC--------CC---CCCCcEEEccCCCCCC
Q 036458 359 -E-----TDNPEVEL-KPGI---D-LLGPVDE-IFF---DTY---DRFVPT--------NN---HEADHCFISTSYDATT 409 (445)
Q Consensus 359 -~-----~~~~~~~l-~~~~---~-~l~~~~~-~~~---~~~---~~~~~~--------~~---~~~~~~~~~~~~d~~~ 409 (445)
+ ...+++++ +.++ + +|+...+ ... .|. ..|... .. ....+|+++.++-.+.
T Consensus 362 ~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 362 NPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred CCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 0 01123333 2222 2 5542111 111 111 122111 00 1236999999999999
Q ss_pred ccHhHHHHHHHHHHHhc
Q 036458 410 HFESTVQDVLEMYTKIT 426 (445)
Q Consensus 410 ~~~~~~~~~~~~~~~~~ 426 (445)
.++.|+...++.-++|.
T Consensus 442 ~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 442 GIGACIGNGKNTANEII 458 (463)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999988874
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=3.3e-23 Score=215.98 Aligned_cols=387 Identities=16% Similarity=0.160 Sum_probs=226.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM 81 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~ 81 (445)
..+||+|||||++||+||++|+++ |++|+|+|+++++||++.|.+. .+|.+|.|||++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~--------------------~g~~~d~G~~~~~ 70 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSE--------------------DGFIWEEGPNSFQ 70 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEecc--------------------CCeEEecCCchhc
Confidence 457999999999999999999999 9999999999999999999887 4699999999998
Q ss_pred cCchhHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccc
Q 036458 82 ANGGLVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGL 160 (445)
Q Consensus 82 ~~~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~ 160 (445)
...+.+..+.+.|+.+++.+... ...|++.+|+++++|.+..+.+...++++.+|.++..- .. .+.. +..
T Consensus 71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~--~~~---- 141 (496)
T PLN02576 71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLG--AF-GWKR--PPP---- 141 (496)
T ss_pred cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHH--Hh-hccC--CCC----
Confidence 87777777777788777655432 34567789999999988666666667777665433211 11 1100 100
Q ss_pred cCCCCCHHHHHHHcCCChhHHHH-HHHHh-hccccCCCCCCcHHHHHHHHHHHHH-----------Hh------------
Q 036458 161 DLNKVTAREIISKYGLEDDTIDF-IGHAL-ALHINDSYLEEPAMDFVKRIKLYAE-----------SL------------ 215 (445)
Q Consensus 161 ~~~~~s~~~~~~~~~l~~~~~~~-i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~-----------s~------------ 215 (445)
...++|+.+|+++. +.+.+.+. +.... +++..+ .-+.++..+++++..... ..
T Consensus 142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~ 219 (496)
T PLN02576 142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGD-PSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPR 219 (496)
T ss_pred CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCC-HHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccc
Confidence 12468999999875 66665543 33322 222221 111233334443322110 00
Q ss_pred ----hhccCCCceEEeCCCcchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEE-EEEe-CC-eEEEcCEEEECCCC
Q 036458 216 ----ARFQGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVI-GVTS-EG-ETAKCKKVVCDPSY 287 (445)
Q Consensus 216 ----~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~-~v~~-~g-~~~~ad~VI~~~~~ 287 (445)
... +.....++++|+++|+++|++.+ + ++|++|++|++|..+.++.+. .+.. +| +++.||+||++.+.
T Consensus 220 ~~~~~~~-~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 220 DPRLPKP-KGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred ccccccc-cCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 000 11234677999999999998643 5 789999999999985333232 2222 45 47999999998642
Q ss_pred C------Cc---cc----cc--cceEEEEEEeeccCCCCCC-----CCCceEEEeCCCcCCCCCCEEEEEe-cCCccccC
Q 036458 288 L------PD---KV----QK--VGKVARAICIMNHPIPDTN-----DSHSCQVILPQKQLGRKSDMYLFCC-SYAHNVAP 346 (445)
Q Consensus 288 ~------p~---~~----~~--~~~~~r~i~i~~~~i~~~~-----~~~~~~i~~p~~~~~~~~~i~v~~~-s~~~~~aP 346 (445)
. +. .. .. ...+....+.++++....+ ....+..+.|+.+ ..+.+-+... ...+..+|
T Consensus 296 ~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~~~lg~~~~s~~~p~~~~ 373 (496)
T PLN02576 296 YVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQ--GVKTLGTIYSSSLFPDRAP 373 (496)
T ss_pred HHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCC--CCceEEEEeecCcCCCCCC
Confidence 1 11 00 11 1223333444444321110 1123434444332 1122222223 23456788
Q ss_pred CCcEEEEEEeeeC------CCCcccccHhHHh----hcCCcc--c-cee---eeee---ccccC--------CC--CCC-
Q 036458 347 NGQYIAFVSTEAE------TDNPEVELKPGID----LLGPVD--E-IFF---DTYD---RFVPT--------NN--HEA- 396 (445)
Q Consensus 347 ~G~~~~~vst~~~------~~~~~~~l~~~~~----~l~~~~--~-~~~---~~~~---~~~~~--------~~--~~~- 396 (445)
+|..++.+-.... ..++++.++.+++ +++.-. + ..+ .|.. .|.+- .. ...
T Consensus 374 ~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~ 453 (496)
T PLN02576 374 EGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLG 453 (496)
T ss_pred CCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcC
Confidence 8876543222111 1122333333333 333111 1 111 1221 12110 00 012
Q ss_pred -CcEEEccCCCCCCccHhHHHHHHHHHHHhc
Q 036458 397 -DHCFISTSYDATTHFESTVQDVLEMYTKIT 426 (445)
Q Consensus 397 -~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 426 (445)
.|++++..+-.+...++|+..++++-++|.
T Consensus 454 ~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 484 (496)
T PLN02576 454 LPGLFLGGNYRGGVALGKCVESGYEAADLVI 484 (496)
T ss_pred CCCEEEeccccCCccHHHHHHHHHHHHHHHH
Confidence 599999988888888999999999999884
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.93 E-value=1e-22 Score=209.63 Aligned_cols=379 Identities=12% Similarity=0.120 Sum_probs=217.7
Q ss_pred cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
+|+|||||++||+||+.|+++| ++|+|||+++++||++.|.+. .++.+|+|++++...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~~ 61 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK--------------------DGFPIELGPESFLAR 61 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee--------------------CCeEEecChHHhcCC
Confidence 6999999999999999999988 899999999999999999887 469999999987654
Q ss_pred -chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChH--------HHhhccccCchhHHHHHHHHHHHHhhhccCc
Q 036458 84 -GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDV--------EALKSPLMGLFEKRRARKFFIYVQEYEEDDP 154 (445)
Q Consensus 84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~--------~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~ 154 (445)
.++.+++.++|+..++.+..-...+++.+|+.+++|.... ..+...+++..++.+ ....+. .
T Consensus 62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~ 132 (451)
T PRK11883 62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR------AAADLR---P 132 (451)
T ss_pred cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH------hhCccc---C
Confidence 3677888889987654433223346777888888775310 111111222111111 011110 0
Q ss_pred cccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHH-----------hhh---c
Q 036458 155 KSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAES-----------LAR---F 218 (445)
Q Consensus 155 ~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s-----------~~~---~ 218 (445)
. ......++|+.+|+++. +++...+ ++.... .++.. +..+.++...+..+..+..+ ... +
T Consensus 133 ~--~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (451)
T PRK11883 133 P--RWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK 208 (451)
T ss_pred C--CCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC
Confidence 0 01112468999999763 5555443 333222 23322 11122333333222221111 000 1
Q ss_pred cCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC-------Ccc
Q 036458 219 QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL-------PDK 291 (445)
Q Consensus 219 ~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~-------p~~ 291 (445)
....+.++++|++.|++++++.+... +|++|++|++|..+ ++.+.....+|++++||+||++.+.. +..
T Consensus 209 -~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~ 284 (451)
T PRK11883 209 -TKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPP 284 (451)
T ss_pred -CCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeEEEEECCCCEEEcCEEEECCCHHHHHHhccChh
Confidence 12345689999999999988765432 89999999999884 44443233578889999999986531 111
Q ss_pred c----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEE-EEEec-CCccccCCCcEEEEEEeeeCC---
Q 036458 292 V----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMY-LFCCS-YAHNVAPNGQYIAFVSTEAET--- 360 (445)
Q Consensus 292 ~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~-v~~~s-~~~~~aP~G~~~~~vst~~~~--- 360 (445)
. +. ...+.+..+.++++++.. .....++++... +.++. +...+ ..+..+|+|..++.+....+.
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~ 359 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATNL--PDGTGFLVARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEA 359 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCCC--CCceEEEecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCch
Confidence 0 11 234455556667764211 223445565432 22332 22233 346678999888766553321
Q ss_pred ---CCcccccHhHHhhc----CC-cccceee---eee---ccccC--------CCCC--CCcEEEccCCCCCCccHhHHH
Q 036458 361 ---DNPEVELKPGIDLL----GP-VDEIFFD---TYD---RFVPT--------NNHE--ADHCFISTSYDATTHFESTVQ 416 (445)
Q Consensus 361 ---~~~~~~l~~~~~~l----~~-~~~~~~~---~~~---~~~~~--------~~~~--~~~~~~~~~~d~~~~~~~~~~ 416 (445)
.++++.++.+++.| +. ....... |.. .|.+. .... -+|+|+++.+-.+...+.|+.
T Consensus 360 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~ 439 (451)
T PRK11883 360 VVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIA 439 (451)
T ss_pred hccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHH
Confidence 12333344444433 31 1111111 111 11111 0011 248999987777778999999
Q ss_pred HHHHHHHHhc
Q 036458 417 DVLEMYTKIT 426 (445)
Q Consensus 417 ~~~~~~~~~~ 426 (445)
..+.+-++|.
T Consensus 440 sg~~~a~~i~ 449 (451)
T PRK11883 440 QAKRAAARLL 449 (451)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 16
>PRK07208 hypothetical protein; Provisional
Probab=99.90 E-value=8.1e-22 Score=204.70 Aligned_cols=251 Identities=19% Similarity=0.221 Sum_probs=160.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM 80 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l 80 (445)
|....||+|||||++||+||+.|+++|++|+|+|+++++||++.|.+. .+|.+|+|+|++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~--------------------~g~~~d~G~h~~ 60 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY--------------------KGNRFDIGGHRF 60 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc--------------------CCceEccCCcee
Confidence 677899999999999999999999999999999999999999999876 469999999998
Q ss_pred ecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458 81 MAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159 (445)
Q Consensus 81 ~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~ 159 (445)
+.. .++.+++.+++..+.+... ....+++.+|+.+.+|.+..+.+. .+++.++ ++....++... ..+
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~~--~~~~~~~~~~~--~~~----- 128 (479)
T PRK07208 61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWRT--AKCGASYLKAR--LRP----- 128 (479)
T ss_pred ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhHH--HHHHHHHHHHh--cCC-----
Confidence 854 4667777777763332222 223456668888888876333332 2333322 11111222211 001
Q ss_pred ccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHH---------HHHHHHHhh--------hcc-
Q 036458 160 LDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKR---------IKLYAESLA--------RFQ- 219 (445)
Q Consensus 160 ~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~---------i~~~~~s~~--------~~~- 219 (445)
..+++|+.+|+++. +.+.+.+ ++... ..++..+ .-+.++..++.+ ++..+.... ...
T Consensus 129 -~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T PRK07208 129 -RKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVP-CDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETS 205 (479)
T ss_pred -CCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCC-hHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccc
Confidence 01458999999864 4444433 33332 2233321 111222222211 111121110 000
Q ss_pred CCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCC
Q 036458 220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 220 g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~ 286 (445)
....+.||++|+++|+++|.+.++..|++|++|++|++|..++++.+.++.. +|+ ++.||+||++.+
T Consensus 206 ~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 206 LIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP 277 (479)
T ss_pred ceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 0235789999999999999999999999999999999999854444444443 343 689999999865
No 17
>PLN02612 phytoene desaturase
Probab=99.88 E-value=1.1e-20 Score=198.99 Aligned_cols=253 Identities=16% Similarity=0.178 Sum_probs=167.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
..+|+|||+|++||+||++|+++|++|+++|+++++||++.|++.. +++++|.|+|+++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~ 153 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA 153 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence 4789999999999999999999999999999999999999998752 468999999999854
Q ss_pred -chhHHHhhhccccCceeeEEecceEEEe--CCeEE--E----ccCC---hHHHhh-ccccCchhHHHHHH-HHHHHHhh
Q 036458 84 -GGLVRILIHTDVTKYLNFKAVDGSFVYN--KGKIY--K----VPAT---DVEALK-SPLMGLFEKRRARK-FFIYVQEY 149 (445)
Q Consensus 84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~--~g~~~--~----vp~~---~~~~~~-~~l~~~~~k~~~~~-f~~~~~~~ 149 (445)
.++.+++.++|+.+.+.|......+.+. ++... . .|.. ..+.+. ...+++.+|.++.. ++....
T Consensus 154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~-- 231 (567)
T PLN02612 154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIV-- 231 (567)
T ss_pred CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhc--
Confidence 4678888899998777766544433222 22222 2 2222 122222 23345545433211 110000
Q ss_pred hccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458 150 EEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP 227 (445)
Q Consensus 150 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p 227 (445)
...+. .. ..++.|+.+|+++.+.++.+.+ ++...+ ++...+ ..+.++...+..+..++. .. +++...|+
T Consensus 232 -~~~~~-~~--~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~S~~~~l~~l~~~l~--~~--~gs~~~~~ 302 (567)
T PLN02612 232 -GGQAY-VE--AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFIN-PDELSMQCILIALNRFLQ--EK--HGSKMAFL 302 (567)
T ss_pred -ccchh-hh--hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-HHHhhHHHHHHHHHHHHh--cc--CCceEeee
Confidence 00010 11 2356899999999999987765 443332 232211 112234444444443322 11 34566777
Q ss_pred CCCc-chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458 228 LYGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS 286 (445)
Q Consensus 228 ~gG~-~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~ 286 (445)
.|+. ..|++++++.++..|++|++|++|++|..+++++++++. .+|+++.||+||++.+
T Consensus 303 ~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 303 DGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred cCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 7775 678999999888899999999999999986567666676 4788999999999854
No 18
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.88 E-value=7.3e-21 Score=196.47 Aligned_cols=255 Identities=19% Similarity=0.214 Sum_probs=168.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-c
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-G 84 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~ 84 (445)
+|+|||+|++||++|+.|+++|++|+|+|+++++||+++++... ++|.+|.|+|+++.. .
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA 61 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence 58999999999999999999999999999999999999998531 469999999999853 4
Q ss_pred hhHHHhhhccccCceeeEEecceEEEeCCeEEE--------cc-CChHHHhhccccCchhHHHHHHHHHH---HHh---h
Q 036458 85 GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYK--------VP-ATDVEALKSPLMGLFEKRRARKFFIY---VQE---Y 149 (445)
Q Consensus 85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~--------vp-~~~~~~~~~~l~~~~~k~~~~~f~~~---~~~---~ 149 (445)
++.+++.++|+.+.+.+......|...+++... .| ......++...+++.+|.++...... ... +
T Consensus 62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 777888889987665544322223333444322 23 12245566677888887655443311 111 1
Q ss_pred hccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458 150 EEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP 227 (445)
Q Consensus 150 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p 227 (445)
... ...++ ..+++|+.+|+++++.++.+.+ ++...+ ++...+ ..+.++..++..++.+. ... .++...++
T Consensus 142 ~~~-~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~-~~~~Sa~~~~~~~~~~~--~~~--~~s~~~~~ 213 (474)
T TIGR02732 142 DGA-MKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFID-CENISARCMLTIFMLFA--AKT--EASKLRML 213 (474)
T ss_pred chh-hhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHH--hCC--Ccceeeee
Confidence 100 01111 2246899999999998886444 443322 222211 11234445555444222 222 34566789
Q ss_pred CCCcch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC--CC--cEEEEEe-CC---eEEEcCEEEECCCC
Q 036458 228 LYGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG--DG--KVIGVTS-EG---ETAKCKKVVCDPSY 287 (445)
Q Consensus 228 ~gG~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~~~~v~~-~g---~~~~ad~VI~~~~~ 287 (445)
++|+++ +.+.+.+.++..||+|+++++|++|..++ ++ ++++|.. +| +++.||+||++.+.
T Consensus 214 ~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 214 KGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred cCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 999877 77889999999999999999999998743 23 2666654 33 56899999998654
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.87 E-value=3.1e-20 Score=191.44 Aligned_cols=252 Identities=17% Similarity=0.182 Sum_probs=161.5
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-c
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-G 84 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~ 84 (445)
+|+|||+|++||+||++|+++|++|+|+|+++++||++.|++.. .++.+|.|+|++... .
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP 61 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence 58999999999999999999999999999999999999998531 468999999998753 4
Q ss_pred hhHHHhhhccccCceeeEEecceEEEe--CCeEE--Ecc---CCh---HHHhh-ccccCchhHHHHHHHHHHHHhhhccC
Q 036458 85 GLVRILIHTDVTKYLNFKAVDGSFVYN--KGKIY--KVP---ATD---VEALK-SPLMGLFEKRRARKFFIYVQEYEEDD 153 (445)
Q Consensus 85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~--~g~~~--~vp---~~~---~~~~~-~~l~~~~~k~~~~~f~~~~~~~~~~~ 153 (445)
.+.+++.++|+.+.+.+......|... ++... ..| ... .+.+. ...+++.++.++..-+. .......
T Consensus 62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 139 (453)
T TIGR02731 62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLL--PAIVRGQ 139 (453)
T ss_pred hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhH--HHHhcCc
Confidence 778888889987766655433322211 22222 122 210 11121 12344444433221111 1000000
Q ss_pred ccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC-
Q 036458 154 PKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG- 230 (445)
Q Consensus 154 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG- 230 (445)
+. .. ..+++|+.+|+++.+.++.+.+ ++.... +++..+ ..+.++...+..+..++. ..+ ++...+..+|
T Consensus 140 ~~-~~--~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~-p~~~S~~~~~~~l~~~~~--~~~--g~~~~~~~g~~ 211 (453)
T TIGR02731 140 KY-VE--EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFIN-PDELSMTVVLTALNRFLQ--ERH--GSKMAFLDGAP 211 (453)
T ss_pred cc-hh--hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHh--cCC--CCeeEeecCCC
Confidence 10 11 2357899999999999998765 443332 333221 112244455555444332 122 3333455555
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCe-----EEEcCEEEECCC
Q 036458 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGE-----TAKCKKVVCDPS 286 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~-----~~~ad~VI~~~~ 286 (445)
++.+++++.+.++..|++|++|++|++|..++++++++|+. +|+ ++.||.||++.+
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p 273 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMP 273 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCC
Confidence 57899999999989999999999999998755677777774 454 789999999864
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.86 E-value=2.8e-20 Score=194.12 Aligned_cols=258 Identities=18% Similarity=0.204 Sum_probs=168.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-C
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-N 83 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~ 83 (445)
.+|+|||+|++||++|+.|+++|++|+|+|+++++||++.++... +++.+|.|+|+++. .
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~ 136 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY 136 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence 589999999999999999999999999999999999999998631 46899999999875 4
Q ss_pred chhHHHhhhccccCceeeEEecceEEEeCCeEEE----ccCC-h----HHHhhccccCchhHHHHHHHH--H-HHHhhhc
Q 036458 84 GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYK----VPAT-D----VEALKSPLMGLFEKRRARKFF--I-YVQEYEE 151 (445)
Q Consensus 84 ~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~----vp~~-~----~~~~~~~l~~~~~k~~~~~f~--~-~~~~~~~ 151 (445)
.++.+++.++|+.+.+.+......|...+|.... +|.. . ...+....+++.+|.++..-+ . .+...
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al-- 214 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRAL-- 214 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhc--
Confidence 5788899999998766554322223344555422 2221 1 144455667776765442111 0 01110
Q ss_pred cCcc--ccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccc-cCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeC
Q 036458 152 DDPK--SHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHI-NDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPL 228 (445)
Q Consensus 152 ~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~-~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~ 228 (445)
..+. ...+...++.|+.+|+++++.++.+.+.+...+.+.. ..+..+.++..++..+..+. .+- ..+...||+
T Consensus 215 ~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~---~~~-~~~~l~~~~ 290 (569)
T PLN02487 215 VDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA---TKT-EASLLRMLK 290 (569)
T ss_pred cCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---hcC-CcceeeecC
Confidence 0000 0011123569999999999888855543333332221 11111223333433332111 111 234568999
Q ss_pred CCcch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC--CC--cEEEEEe--C--CeEEEcCEEEECCCC
Q 036458 229 YGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG--DG--KVIGVTS--E--GETAKCKKVVCDPSY 287 (445)
Q Consensus 229 gG~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~~~~v~~--~--g~~~~ad~VI~~~~~ 287 (445)
+|+++ |++.+++.++..||+|+++++|++|..+. ++ ++++|+. + ++++.||.||++.+.
T Consensus 291 Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 291 GSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV 358 (569)
T ss_pred CCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence 99995 99999999999999999999999999852 22 3677765 3 457899999998664
No 21
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.78 E-value=1.7e-17 Score=168.95 Aligned_cols=238 Identities=18% Similarity=0.170 Sum_probs=147.5
Q ss_pred HHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-chhHHHhhhcccc
Q 036458 18 ILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-GGLVRILIHTDVT 96 (445)
Q Consensus 18 ~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~~l~~~l~~~g~~ 96 (445)
+||++|+++|++|+|||+++++||++.|++.++ -++.+|+|+|++... ..+.+++.++|+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~ 62 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE 62 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence 489999999999999999999999999998743 135699999999864 4677888888987
Q ss_pred CceeeEEecceEEEeCCeEEE-----ccC--Ch-HHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCCCCHH
Q 036458 97 KYLNFKAVDGSFVYNKGKIYK-----VPA--TD-VEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAR 168 (445)
Q Consensus 97 ~~l~~~~~~~~~~~~~g~~~~-----vp~--~~-~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~s~~ 168 (445)
..+.+......+...++.... +|. .. ...+....++..++.++.+++..+.... . . ..+..|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~----~--~~~~~s~~ 134 (419)
T TIGR03467 63 PRLQGPRLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTR--F----R--ALDDTTVG 134 (419)
T ss_pred hhhhcccCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcC--c----c--ccCCCCHH
Confidence 665432211111122333211 221 10 1122334455556655555443332211 0 1 23568999
Q ss_pred HHHHHcCCChhHHHHH-HHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHH-HHHHHHHHHc
Q 036458 169 EIISKYGLEDDTIDFI-GHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELP-QAFARLSAVY 245 (445)
Q Consensus 169 ~~~~~~~l~~~~~~~i-~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~-q~l~r~~~~~ 245 (445)
+|+++++.++.+.+.+ ... .+++..+ ..+.++..++..++. .+........+.||++|++++. +++++.++..
T Consensus 135 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~ 210 (419)
T TIGR03467 135 DWLQAAGQSERLIERLWEPLLLSALNTP-PERASAALAAKVLRD---SFLAGRAASDLLLPRVPLSELFPEPARRWLDSR 210 (419)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH---HHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHc
Confidence 9999988888777643 322 2232211 111233333332221 1111101335789999988866 5588888888
Q ss_pred CcEEEeCCcceeEEEcCCCcEEEE-EeCCeEEEcCEEEECCC
Q 036458 246 GGTYMLNKPECKVEFDGDGKVIGV-TSEGETAKCKKVVCDPS 286 (445)
Q Consensus 246 Gg~i~l~~~V~~I~~~~~g~~~~v-~~~g~~~~ad~VI~~~~ 286 (445)
|++|++|++|++|..+ ++++..+ ..+|+++.||.||++.+
T Consensus 211 g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p 251 (419)
T TIGR03467 211 GGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVP 251 (419)
T ss_pred CCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCC
Confidence 9999999999999985 4444333 34788899999999865
No 22
>PLN02268 probable polyamine oxidase
Probab=99.77 E-value=7.4e-18 Score=172.93 Aligned_cols=225 Identities=16% Similarity=0.182 Sum_probs=127.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN- 83 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~- 83 (445)
.+|||||||++||+||+.|.++|++|+|||+++++||++.|.+. .++.+|+|++|++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~ 60 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC 60 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence 37999999999999999999999999999999999999998654 468999999999742
Q ss_pred --chhHHHhhhccccCceeeEEe-cceEEEeCC---------eEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhc
Q 036458 84 --GGLVRILIHTDVTKYLNFKAV-DGSFVYNKG---------KIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEE 151 (445)
Q Consensus 84 --~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g---------~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~ 151 (445)
.++.+++.++|+..+ ... +..+++.++ ....+|.+....+ ...+.+++..+....
T Consensus 61 ~~~~~~~l~~~lgl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~- 127 (435)
T PLN02268 61 NENPLAPLIGRLGLPLY---RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVR- 127 (435)
T ss_pred CCchHHHHHHHhCCceE---eccCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHH-
Confidence 357778888887421 111 112222221 1112221100000 011122222222111
Q ss_pred cCccccccccCCCCCHHHHHHHcC----------CChhHHHHH-HHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccC
Q 036458 152 DDPKSHEGLDLNKVTAREIISKYG----------LEDDTIDFI-GHALALHINDSYLEEPAMDFVKRIKLYAESLARFQG 220 (445)
Q Consensus 152 ~~~~~~~~~~~~~~s~~~~~~~~~----------l~~~~~~~i-~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g 220 (445)
. . ..++.|+.++++.+. +.+...++. ......+.. +..+.++.. + .....+.|
T Consensus 128 --~---~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ls~~~-------~-~~~~~~~g 191 (435)
T PLN02268 128 --D---E--HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAA-DADTISLKS-------W-DQEELLEG 191 (435)
T ss_pred --h---c--cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCC-ChHhCchhh-------c-CCccccCC
Confidence 0 0 124578888775432 122222211 110111111 000001110 0 00001113
Q ss_pred CCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS 286 (445)
Q Consensus 221 ~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~ 286 (445)
.. .+..+|++.|++++++ |..|++|++|++|..+ ++.+.....+|+++.||+||++.+
T Consensus 192 ~~--~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~ad~VIva~P 249 (435)
T PLN02268 192 GH--GLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVKVTVEDGTTFVADAAIIAVP 249 (435)
T ss_pred Cc--eeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEEEEECCCcEEEcCEEEEecC
Confidence 22 3567899999988864 5579999999999985 444443335778899999999754
No 23
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.76 E-value=6.4e-17 Score=157.16 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=60.0
Q ss_pred ceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 223 ~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~ 288 (445)
.+.||.||+|+++.++++.++.+|++|.+++.|.+|..| +|+++||+ .+|+++.++.||+|++.|
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchH
Confidence 456999999999999999999999999999999999995 79999998 599999999999998765
No 24
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.76 E-value=5.1e-17 Score=166.97 Aligned_cols=240 Identities=14% Similarity=0.205 Sum_probs=152.1
Q ss_pred cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~ 79 (445)
+.+|+|||||++||+||++|++. |++|+|||+++++||++.++.... .||.+|.||.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------~Gy~~~~G~~~ 83 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------KGYVARGGREM 83 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------CCEEEECCCCc
Confidence 46899999999999999999996 689999999999999999876533 68999999986
Q ss_pred eecCchhHHHhhhc------c---ccCceeeEEecceE-----EEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHH
Q 036458 80 MMANGGLVRILIHT------D---VTKYLNFKAVDGSF-----VYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIY 145 (445)
Q Consensus 80 l~~~~~l~~~l~~~------g---~~~~l~~~~~~~~~-----~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~ 145 (445)
......+.+++.+. | ..++..+.+.++.| ++.+|.... ...+++-.|. .+.+++.
T Consensus 84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L~~k~-r~~Ll~l 152 (576)
T PRK13977 84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGLSKKD-RKELLKL 152 (576)
T ss_pred cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCCCHHH-HHHHHHH
Confidence 44445677777553 2 22555665555543 122232222 2233433332 2222332
Q ss_pred HHhhhccCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceE
Q 036458 146 VQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYI 225 (445)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~ 225 (445)
+.. + .+ .+++.++.||++...+....-. .+.++..-... .++.+....+++|+.-+....-.+...
T Consensus 153 ~l~-----~--e~--~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~ 218 (576)
T PRK13977 153 LLT-----P--EE--KLDDKTIEDWFSPEFFETNFWY---YWRTMFAFEKW--HSALEMRRYMHRFIHHIGGLPDLSGLK 218 (576)
T ss_pred hcc-----C--HH--HhCCcCHHHHHhhcCchhHHHH---HHHHHHCCchh--hHHHHHHHHHHHHHHhhccCCcccccc
Confidence 221 1 11 2467899999987555443332 22233321111 356666555666654443331133444
Q ss_pred EeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEECCC
Q 036458 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-GD--GKVIGVTS--EGE-----TAKCKKVVCDPS 286 (445)
Q Consensus 226 ~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~-~~--g~~~~v~~--~g~-----~~~ad~VI~~~~ 286 (445)
+.+|- ...|.+.|.+.++.+|++++++++|++|..+ ++ +++++|.. +|+ ...+|.||++.+
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 55555 4679999999999999999999999999984 23 56888864 332 346888888643
No 25
>PLN02568 polyamine oxidase
Probab=99.73 E-value=4.2e-16 Score=162.68 Aligned_cols=78 Identities=9% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCC-----CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEec
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDG-----LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDM 75 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G-----~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDl 75 (445)
|.+.+||||||||++||+||..|+++| ++|+|||+++++||+++|++. .+|.+|+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~ 61 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF--------------------GGERIEM 61 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe--------------------CCeEEec
Confidence 445689999999999999999999988 999999999999999999887 4699999
Q ss_pred ccceeec--CchhHHHhhhccccCc
Q 036458 76 IPKFMMA--NGGLVRILIHTDVTKY 98 (445)
Q Consensus 76 gp~~l~~--~~~l~~~l~~~g~~~~ 98 (445)
|+++++. ..++.+++.++|+.+.
T Consensus 62 G~~~~~g~~~~~~~~l~~~~g~~~~ 86 (539)
T PLN02568 62 GATWIHGIGGSPVYKIAQEAGSLES 86 (539)
T ss_pred CCceeCCCCCCHHHHHHHHhCCccc
Confidence 9999984 4567788888888543
No 26
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=143.46 Aligned_cols=250 Identities=16% Similarity=0.188 Sum_probs=149.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA- 82 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~- 82 (445)
..+|+|||+|++||+||++|++. ++|+++|++++.||+++|...+- -..++-+|.|-.++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~----------------d~~g~~vDtGfiVyn~~ 70 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT----------------DGGGVFVDTGFIVYNER 70 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc----------------cCCceeecceeEEecCC
Confidence 36899999999999999999987 89999999999999999986321 1156889999887764
Q ss_pred -CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccC--ChHHHhh--ccccCchhHHHHHHHHHHHHhhhccCcccc
Q 036458 83 -NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA--TDVEALK--SPLMGLFEKRRARKFFIYVQEYEEDDPKSH 157 (445)
Q Consensus 83 -~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~--~~~~~~~--~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~ 157 (445)
...+.+++...|+...-.+....- -+.+|.+. +-. .....|. ..++. .++-+++..+..+........
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v--~~d~gglE-y~g~tgl~~L~aqk~n~l~----pRf~~mlaeiLrf~r~~~~~~ 143 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSV--SLDMGGLE-YSGLTGLAGLLAQKRNLLR----PRFPCMLAEILRFYRSDLAPS 143 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEE--EecCCcee-eccCCCccchhhccccccc----hhHHHHHHHHHHHhhhhccch
Confidence 457888998899854333322111 12223221 111 0011121 11211 234444444444433111111
Q ss_pred ccccCCCCCHHHHHHHcCCChhHHHHHHHHh--hcccc--CCCCCCcHHHHHHHHHHHHHHhhh-ccCCCceEEe-CCCc
Q 036458 158 EGLDLNKVTAREIISKYGLEDDTIDFIGHAL--ALHIN--DSYLEEPAMDFVKRIKLYAESLAR-FQGGSPYIYP-LYGL 231 (445)
Q Consensus 158 ~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~--~l~~~--~~~~~~~~~~~l~~i~~~~~s~~~-~~g~s~~~~p-~gG~ 231 (445)
........|+.+|+++.++++...+.....+ +.++. .+...-|+...+ .|....+. +.-+.|.|+. .||+
T Consensus 144 d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~----~f~~nhGll~l~~rp~wrtV~ggS 219 (447)
T COG2907 144 DNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL----VFTDNHGLLYLPKRPTWRTVAGGS 219 (447)
T ss_pred hhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH----HHHhccCceecCCCCceeEcccch
Confidence 1112245899999999999988775332322 23321 000011333322 23332222 1135666654 5677
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDP 285 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~ 285 (445)
..-.|.+. +..++++.++++|.+|.+-.+|+ +.+..+|++-.+|.||.+.
T Consensus 220 ~~yvq~la---a~~~~~i~t~~~V~~l~rlPdGv-~l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 220 RAYVQRLA---ADIRGRIETRTPVCRLRRLPDGV-VLVNADGESRRFDAVVIAT 269 (447)
T ss_pred HHHHHHHh---ccccceeecCCceeeeeeCCCce-EEecCCCCccccceeeeec
Confidence 77777554 66788999999999999866663 3344679988899888754
No 27
>PLN02529 lysine-specific histone demethylase 1
Probab=99.69 E-value=1.6e-15 Score=161.81 Aligned_cols=258 Identities=14% Similarity=0.190 Sum_probs=148.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
..||+|||+|++||+||..|+++|++|+++|+++++||++.|..... ....+.+|+|++|++..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~----------------~g~~~~~DlGaswi~g~ 223 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR----------------KGQFAAVDLGGSVITGI 223 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC----------------CCCceEEecCCeecccc
Confidence 57999999999999999999999999999999999999999987631 00225899999999853
Q ss_pred -c-hhHHHhhhccccCceeeEEecce--EEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458 84 -G-GLVRILIHTDVTKYLNFKAVDGS--FVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159 (445)
Q Consensus 84 -~-~l~~~l~~~g~~~~l~~~~~~~~--~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~ 159 (445)
+ ++..+..+.|+.-. .+... +.+.+|.......+ +.+ ++ .+.+++..+.++......
T Consensus 224 ~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~~~--------~~-~~~~~l~~~~~l~~~~~~---- 284 (738)
T PLN02529 224 HANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--SNI--------EF-IFNKLLDKVTELRQIMGG---- 284 (738)
T ss_pred ccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--hhH--------HH-HHHHHHHHHHHHHHhccc----
Confidence 2 45556666675321 12221 22335544311111 000 00 111222222211111010
Q ss_pred ccCCCCCHHHHHHHcC------CChhHHHHHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcc
Q 036458 160 LDLNKVTAREIISKYG------LEDDTIDFIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLG 232 (445)
Q Consensus 160 ~~~~~~s~~~~~~~~~------l~~~~~~~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~ 232 (445)
..++.|+.+++++.. +++..++++.... .+.... -.+ ...+. +..+.. -..|..+.......+|++
T Consensus 285 -~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~--~~~--~s~LS-l~~~~~-~~~~e~~G~~~~i~GG~~ 357 (738)
T PLN02529 285 -FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN--AGC--LSDLS-AAYWDQ-DDPYEMGGDHCFLAGGNW 357 (738)
T ss_pred -CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec--CCC--hHHhh-hhHhhh-ccccccCCceEEECCcHH
Confidence 124578999886543 4555454443222 221110 001 11111 111111 111212233567899999
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC----------CCc---c-c---cc-
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY----------LPD---K-V---QK- 294 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~----------~p~---~-~---~~- 294 (445)
.|+++|++ +..|+||++|++|..++++ + .|+++++++.||+||++.+. .|. . . +.
T Consensus 358 ~Li~aLA~-----~L~IrLnt~V~~I~~~~dG-V-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL 430 (738)
T PLN02529 358 RLINALCE-----GVPIFYGKTVDTIKYGNDG-V-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL 430 (738)
T ss_pred HHHHHHHh-----cCCEEcCCceeEEEEcCCe-E-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence 99998875 3359999999999985333 3 45567788999999998542 121 1 0 11
Q ss_pred -cceEEEEEEeeccCCC
Q 036458 295 -VGKVARAICIMNHPIP 310 (445)
Q Consensus 295 -~~~~~r~i~i~~~~i~ 310 (445)
.+.+.+.++.+++++-
T Consensus 431 ~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 431 GFGLLNKVAMVFPSVFW 447 (738)
T ss_pred CCceeEEEEEEeCCccc
Confidence 2567777888888753
No 28
>PLN02676 polyamine oxidase
Probab=99.69 E-value=1.2e-15 Score=158.05 Aligned_cols=263 Identities=15% Similarity=0.161 Sum_probs=143.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM 81 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~ 81 (445)
..+||||||+|++||+||..|+++|. +|+|+|+++++||++.+.+. .++.+|+|++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF--------------------AGVSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC--------------------CCeEEecCCEEEE
Confidence 46899999999999999999999998 69999999999999998776 4689999999996
Q ss_pred c-----CchhHHHhhhccccCcee-eEEecceEEE-eCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCc
Q 036458 82 A-----NGGLVRILIHTDVTKYLN-FKAVDGSFVY-NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDP 154 (445)
Q Consensus 82 ~-----~~~l~~~l~~~g~~~~l~-~~~~~~~~~~-~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~ 154 (445)
. ..++.+++.+.|+..... +.. ....+| .+|+.+ |. +.. ..+. ..+.++..++..+.....
T Consensus 85 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~g~~~--~~---~~~-~~~~-----~~~~~~~~~~~~~~~~~~ 152 (487)
T PLN02676 85 GVGGPESNPIWELANKLKLRTFYSDFDN-LSSNIYKQDGGLY--PK---KVV-QKSM-----KVADASDEFGENLSISLS 152 (487)
T ss_pred cccCcccChHHHHHHhcCCceeecCccc-cceeEECCCCCCC--CH---HHH-HHHH-----HHHHHHHHHHHHHHHhhc
Confidence 3 346777887788753211 111 012223 244433 21 110 0000 011122222222221100
Q ss_pred cccccccCCCCCHHH--HHHHcC-CChh--HHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe-C
Q 036458 155 KSHEGLDLNKVTARE--IISKYG-LEDD--TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP-L 228 (445)
Q Consensus 155 ~~~~~~~~~~~s~~~--~~~~~~-l~~~--~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p-~ 228 (445)
....++.++.+ .+.... .... ..+++.. ......+ ....++...+. ......+ |...+... +
T Consensus 153 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~S~~~~~~-----~~~~~~~-g~~~~~~~~~ 220 (487)
T PLN02676 153 ----AKKAVDISILTAQRLFGQVPKTPLEMVIDYYNY-DYEFAEP-PRVTSLKNTEP-----NPTFVDF-GEDEYFVADP 220 (487)
T ss_pred ----ccCCCCccHHHHHHHHhhCCCCHHHHHHHHHhc-cceeccC-ccccchhhcCc-----ccccccC-CCceEEeecC
Confidence 01123455522 333221 1111 1111110 0001111 00112211110 0001112 33333332 6
Q ss_pred CCcchHHHHHHHHHHHc------CcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC-------------C
Q 036458 229 YGLGELPQAFARLSAVY------GGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL-------------P 289 (445)
Q Consensus 229 gG~~~L~q~l~r~~~~~------Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~-------------p 289 (445)
+|++.|+++|++.+... ++.|+||++|++|..+ ++.+...+.+|++++||+||++.+.- |
T Consensus 221 ~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 221 RGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 89999999998755222 3679999999999985 44444334578899999999986521 2
Q ss_pred ccc----c--ccceEEEEEEeeccCCC
Q 036458 290 DKV----Q--KVGKVARAICIMNHPIP 310 (445)
Q Consensus 290 ~~~----~--~~~~~~r~i~i~~~~i~ 310 (445)
... + ..+.+.|.++..++|+-
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW 326 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFW 326 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCC
Confidence 111 1 13567777777788764
No 29
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.69 E-value=2.2e-15 Score=161.48 Aligned_cols=258 Identities=15% Similarity=0.189 Sum_probs=148.1
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.+++..+. .-.+.+|+|++|++..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~----------------~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD----------------GVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC----------------CcceeccCCceeecCC
Confidence 579999999999999999999999999999999999999999887430 0125799999999753
Q ss_pred -c-hhHHHhhhccccCceeeEEecc--eEEEeCCeEEE--ccCChHHHhhccccCchhHHHHHHHHHHHHhhhcc-Cccc
Q 036458 84 -G-GLVRILIHTDVTKYLNFKAVDG--SFVYNKGKIYK--VPATDVEALKSPLMGLFEKRRARKFFIYVQEYEED-DPKS 156 (445)
Q Consensus 84 -~-~l~~~l~~~g~~~~l~~~~~~~--~~~~~~g~~~~--vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~-~~~~ 156 (445)
+ ++..+..++|+.. ..+.. .+++.+|+... ++.. . + ..+.+++..+.++... .+.
T Consensus 302 ~~npl~~l~~~lgl~~----~~~~~~~~~~~~dG~~~~~~~~~~-v-----------~-~~f~~lL~~~~klr~~~~~~- 363 (808)
T PLN02328 302 NGNPLGVLARQLGLPL----HKVRDICPLYLPDGKAVDAEIDSK-I-----------E-ASFNKLLDRVCKLRQAMIEE- 363 (808)
T ss_pred CccHHHHHHHHcCCce----EecCCCceEEeCCCcCcchhhhhh-H-----------H-HHHHHHHHHHHHHHHhhhhc-
Confidence 3 4556677788642 22222 23445665432 1211 1 1 1122233222222110 010
Q ss_pred cccccCCCCCHHHHHHHc------CCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458 157 HEGLDLNKVTAREIISKY------GLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG 230 (445)
Q Consensus 157 ~~~~~~~~~s~~~~~~~~------~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG 230 (445)
.. ..+.|+.++++++ ..++..+..+...++... +........+.. ..+. .-..|.....+.+..+|
T Consensus 364 ~~---~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE---~~~gs~ls~LSl-~~w~-qd~~~e~~G~~~~v~GG 435 (808)
T PLN02328 364 VK---SVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLE---YANASLMSNLSM-AYWD-QDDPYEMGGDHCFIPGG 435 (808)
T ss_pred cc---ccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHh---ccchhhHHHHHh-hhhh-ccccccCCCeEEEECCc
Confidence 01 1236888877643 233443333322221110 100011111110 1111 00112112235567899
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC----------C---ccc----c
Q 036458 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL----------P---DKV----Q 293 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~----------p---~~~----~ 293 (445)
++.|+++|++.+ .|++|++|++|..+.++ + .|.++|++++||+||++.+.- | ... +
T Consensus 436 ~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~ 508 (808)
T PLN02328 436 NDTFVRELAKDL-----PIFYERTVESIRYGVDG-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508 (808)
T ss_pred HHHHHHHHHhhC-----CcccCCeeEEEEEcCCe-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence 999999998754 28999999999985333 3 345678899999999985421 1 110 1
Q ss_pred c--cceEEEEEEeeccCCC
Q 036458 294 K--VGKVARAICIMNHPIP 310 (445)
Q Consensus 294 ~--~~~~~r~i~i~~~~i~ 310 (445)
. .+.+.+.++.+++++-
T Consensus 509 ~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 509 RLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred cCCCcceEEEEEEeCCccc
Confidence 1 3567777777777754
No 30
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.67 E-value=9.1e-16 Score=151.08 Aligned_cols=242 Identities=20% Similarity=0.233 Sum_probs=126.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA 82 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~ 82 (445)
...||||||+|++||++|+.|+++|++|+|||+++++|||+.+.+.. +=++|++.+++..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~--------------------~~~~d~gG~~i~p 65 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAG--------------------GEYTDLGGQYINP 65 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEecc--------------------ceeeccCCcccCc
Confidence 45899999999999999999999999999999999999999998862 3456777666543
Q ss_pred -CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHH-HHHHHHHHHhhhccCcc-cccc
Q 036458 83 -NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRR-ARKFFIYVQEYEEDDPK-SHEG 159 (445)
Q Consensus 83 -~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~-~~~f~~~~~~~~~~~~~-~~~~ 159 (445)
...++....+.|+... +|.......+-..+.....|.-..+.. .+.+. ...|.......++.++. +...
T Consensus 66 ~~~~~l~~~k~~gv~~~-~fi~~g~~~~~~~~~~~~~p~~~~~~~-------~d~~~~~~~~~~~a~~~~~~~~~~t~~~ 137 (450)
T COG1231 66 THDALLAYAKEFGVPLE-PFIRDGDNVIGYVGSSKSTPKRSLTAA-------ADVRGLVAELEAKARSAGELDPGLTPED 137 (450)
T ss_pred cchhhhhhHHhcCCCCC-ceeccCcccccccccccccchhccchh-------hhhcchhhhhhhhhhcccccCcccCcch
Confidence 3456666667777532 232211111100010010111000000 01110 11111111111111111 0011
Q ss_pred ccCCCCCHHHHHHH---cCCChhHHHHHHHHhhccc--cCCCCCCcHHHHHHHHHHHHHHhhhccC---CCceEEeCCCc
Q 036458 160 LDLNKVTAREIISK---YGLEDDTIDFIGHALALHI--NDSYLEEPAMDFVKRIKLYAESLARFQG---GSPYIYPLYGL 231 (445)
Q Consensus 160 ~~~~~~s~~~~~~~---~~l~~~~~~~i~~~~~l~~--~~~~~~~~~~~~l~~i~~~~~s~~~~~g---~s~~~~p~gG~ 231 (445)
...+.+++.+| +. ++++.. ++.-+.... ..+++ ....+.. .+....+.++.+ ....+++.|||
T Consensus 138 ~e~~~~~~~~W-~~~~~~~~~~~----~~a~~~~g~~~~~~~~---~~~d~~~-~~~~~~~~~~~~~e~~~~~~~~~GGm 208 (450)
T COG1231 138 RELDLESLAAW-KTSSLRGLSRD----PGARVSPGPIEPGDVS---LLHDALP-LRSASVVDRGIGGEIRTQMLQRLGGM 208 (450)
T ss_pred hhhhhHHHHhh-hhccccccccC----ccceeccCCCCccccc---chhhhhh-hhhhhhccccccccccchhhccCccH
Confidence 12233555666 10 111110 000011110 11111 0111111 111222222211 23445777999
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC-eEEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG-ETAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g-~~~~ad~VI~~~~ 286 (445)
+.|+++|++ ..|..|.++++|.+|..+++| +.|++.. +++++|+||++.+
T Consensus 209 d~la~Afa~---ql~~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 209 DQLAEAFAK---QLGTRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HHHHHHHHH---HhhceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEecC
Confidence 999999985 567899999999999986444 4466554 8899999999865
No 31
>PLN03000 amine oxidase
Probab=99.64 E-value=1.5e-14 Score=154.96 Aligned_cols=260 Identities=13% Similarity=0.163 Sum_probs=144.2
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN 83 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~ 83 (445)
..+|+|||+|++||+||..|++.|++|+|+|+++++||++.|.+..+ ...++.+|+|++|++..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g----------------~~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA----------------NRVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC----------------CCCceEeecCCeEEeCC
Confidence 57999999999999999999999999999999999999999988643 11358999999999864
Q ss_pred -c-hhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccccc
Q 036458 84 -G-GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLD 161 (445)
Q Consensus 84 -~-~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~ 161 (445)
+ ++..++.++|+.-+ .+.. ...+++.+|+.. |.+....+ +. .+..++..+..+...... .
T Consensus 248 ~~npl~~L~~qlgl~l~-~~~~-~~~ly~~~Gk~v--~~~~~~~v--------e~-~fn~lLd~~~~lr~l~~~--~--- 309 (881)
T PLN03000 248 LGNPLGIIARQLGSSLY-KVRD-KCPLYRVDGKPV--DPDVDLKV--------EV-AFNQLLDKASKLRQLMGD--V--- 309 (881)
T ss_pred CccHHHHHHHHcCCcee-ecCC-CCeEEEeCCcCC--chhhhhhH--------HH-HHHHHHHHHHHHHHHhcc--c---
Confidence 3 34455667776421 1111 222345566543 32211000 00 111122111111110000 0
Q ss_pred CCCCCHHHHHHH----c--CCChhHHHHHH-HHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchH
Q 036458 162 LNKVTAREIISK----Y--GLEDDTIDFIG-HALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGEL 234 (445)
Q Consensus 162 ~~~~s~~~~~~~----~--~l~~~~~~~i~-~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L 234 (445)
..+.|+.++++. . .+.++.+..+. +...+... .......+. + .++.....|..........+|++.|
T Consensus 310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~----~as~ls~LS-l-~~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYA----NAGLVSKLS-L-AFWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcc----cccCHHHHH-H-HHhhhcccccCCCceEEeCCCHHHH
Confidence 012444443321 1 22332222221 11112111 001111111 0 1111111121122345578999999
Q ss_pred HHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC----------CC---ccc----c--cc
Q 036458 235 PQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY----------LP---DKV----Q--KV 295 (445)
Q Consensus 235 ~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~----------~p---~~~----~--~~ 295 (445)
+++|++.+ .|+++++|++|..+ ++.+ .|++++++++||+||++.+. .| ... . ..
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~ 456 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGF 456 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCC
Confidence 99998754 38999999999985 3333 35566678999999998542 12 111 1 13
Q ss_pred ceEEEEEEeeccCCC
Q 036458 296 GKVARAICIMNHPIP 310 (445)
Q Consensus 296 ~~~~r~i~i~~~~i~ 310 (445)
+.+.+.++.+++++-
T Consensus 457 G~l~KViL~Fd~~FW 471 (881)
T PLN03000 457 GLLNKVAMLFPYVFW 471 (881)
T ss_pred cceEEEEEEeCCccc
Confidence 567888888888764
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.64 E-value=2.9e-14 Score=138.35 Aligned_cols=233 Identities=17% Similarity=0.160 Sum_probs=147.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEE--EEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVL--HMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM 81 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~Vl--vlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~ 81 (445)
..+|+|+|+|++||++|++|++.+-+|+ ++|+.+|+||..+| ...+ ++|-||.||..+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS-~r~~------------------ng~ifE~GPrtlr 71 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS-DRMQ------------------NGFIFEEGPRTLR 71 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee-ccCC------------------CceeeccCCCccC
Confidence 3589999999999999999999997764 49999999999999 3322 6899999999997
Q ss_pred cCch----hHHHhhhccccCceeeEEec-----ceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhcc
Q 036458 82 ANGG----LVRILIHTDVTKYLNFKAVD-----GSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEED 152 (445)
Q Consensus 82 ~~~~----l~~~l~~~g~~~~l~~~~~~-----~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~ 152 (445)
..++ .++++.++|+.+.+.-.+.+ ..|+|..|++..+|++........+.++ -|..+..|+....+-...
T Consensus 72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~ 150 (491)
T KOG1276|consen 72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS 150 (491)
T ss_pred cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence 6554 78888899997644322221 2467889999999988554333333333 343444444332211101
Q ss_pred CccccccccCCCCCHHHHHHHcCCChhHHHHHHHHh--hccccCCCCCCcHHHHHHHHHHHHHHh---------hhcc--
Q 036458 153 DPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHAL--ALHINDSYLEEPAMDFVKRIKLYAESL---------ARFQ-- 219 (445)
Q Consensus 153 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~--~l~~~~~~~~~~~~~~l~~i~~~~~s~---------~~~~-- 219 (445)
. ...++|+.+|+++. +.+++.+++..++ ..+..| .-+-+...+|..+...-... +++.
T Consensus 151 ~-------~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD-~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 151 D-------PSADESVESFARRR-FGKEVADRLISPFIRGIYAGD-PSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK 221 (491)
T ss_pred C-------CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCC-hHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence 1 22458999998642 4477766543332 233322 11223444444332211111 1110
Q ss_pred ---------------CCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCc
Q 036458 220 ---------------GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGK 265 (445)
Q Consensus 220 ---------------g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~ 265 (445)
+.-+.+-.++|+..+|++++..+...+..+.+..++..+.....|+
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~ 282 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN 282 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence 0111133477899999999999888888889999998887644443
No 33
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=4.8e-15 Score=152.37 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=62.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCe-EEecccceeec
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEY-NVDMIPKFMMA 82 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~iDlgp~~l~~ 82 (445)
..+|||||||++||+||..|...|++|+|||+++++|||+.|++... + .+|+|.+++..
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~--------------------~~~vd~Gas~~~g 74 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEG--------------------GDHVDLGASVLTG 74 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCC--------------------CCeeecCCceecC
Confidence 57999999999999999999999999999999999999999998732 3 59999999985
Q ss_pred C-c-hhHHHhhhccccCc
Q 036458 83 N-G-GLVRILIHTDVTKY 98 (445)
Q Consensus 83 ~-~-~l~~~l~~~g~~~~ 98 (445)
. + ++.-+..++|+..+
T Consensus 75 ~~~npl~~l~~qlgl~~~ 92 (501)
T KOG0029|consen 75 VYNNPLALLSKQLGLELY 92 (501)
T ss_pred cCccHHHHHHHHhCcccc
Confidence 3 3 44444455776543
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.55 E-value=2.1e-14 Score=145.83 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=58.8
Q ss_pred hhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-CchhHHHhhh
Q 036458 14 LKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NGGLVRILIH 92 (445)
Q Consensus 14 l~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~~l~~~l~~ 92 (445)
|+||+||++|+++|++|+|||+++++||++.|++.+. .+|.+|+|++++.. ...+.+++.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN------------------PGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT------------------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc------------------cceeecCCcccccccchhhHHHHHH
Confidence 6999999999999999999999999999999999841 26999999999985 4456777777
Q ss_pred ccccCceeeEEec
Q 036458 93 TDVTKYLNFKAVD 105 (445)
Q Consensus 93 ~g~~~~l~~~~~~ 105 (445)
+++...++.....
T Consensus 63 l~~~~~~~~~~~~ 75 (450)
T PF01593_consen 63 LGLELSLETFPFP 75 (450)
T ss_dssp HTHHTTEEEEEES
T ss_pred hhhcccccccccc
Confidence 7776555554443
No 35
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.1e-14 Score=142.82 Aligned_cols=240 Identities=19% Similarity=0.229 Sum_probs=140.7
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-Cc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NG 84 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~ 84 (445)
.|+|+|||++||+||+.|+.+|++|+++|+++++||.++||+.. .|-+.+.|-|+++. ..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y~ 62 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCYY 62 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhHH
Confidence 59999999999999999999999999999999999999999984 36778899998875 56
Q ss_pred hhHHHhhhccccCceeeEEecceEEEe---CCeEE--Ec-----cCCh-HHHhhccccCchhHHHHHHHHHHHHhhhccC
Q 036458 85 GLVRILIHTDVTKYLNFKAVDGSFVYN---KGKIY--KV-----PATD-VEALKSPLMGLFEKRRARKFFIYVQEYEEDD 153 (445)
Q Consensus 85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~---~g~~~--~v-----p~~~-~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~ 153 (445)
+++++|.+++....+.++.....|+-. .|.+- .. |... .+.+..+.+...+ ..+|+--+.......
T Consensus 63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~g~ 139 (485)
T COG3349 63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRRE---KIRFVLRLGDAPIGA 139 (485)
T ss_pred HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHH---HhHHhhccccccchh
Confidence 899999998887555555433333211 12211 11 1111 1222222222222 233322111110000
Q ss_pred ccccccccCCCCCHHHHHHHcCCChhHHH--HHHHHhhccc-cCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458 154 PKSHEGLDLNKVTAREIISKYGLEDDTID--FIGHALALHI-NDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG 230 (445)
Q Consensus 154 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~~--~i~~~~~l~~-~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG 230 (445)
.. ...++++.|++||+++++....... |.....++.- ..+ ..++.-.+....+++ +..+ +.+-.....++
T Consensus 140 ~~--~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e--~~sa~~~lt~~~~~~--~~~~-~~~i~~~~~g~ 212 (485)
T COG3349 140 DR--SLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE--GCSARFFLTILNLFL--IVTL-EASILRNLRGS 212 (485)
T ss_pred HH--HHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc--cCcchhHHHHHHHHH--Hhcc-CcchhhhhcCC
Confidence 01 1124577999999999887654432 2212222211 111 112222222111111 2222 23333445666
Q ss_pred cch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC---CCcEEEEEeCCe
Q 036458 231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG---DGKVIGVTSEGE 274 (445)
Q Consensus 231 ~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~---~g~~~~v~~~g~ 274 (445)
..| +.+.+.+.+.+.|.+++.+.+|+.|..+. +.++.++...+.
T Consensus 213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~ 260 (485)
T COG3349 213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGP 260 (485)
T ss_pred CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCc
Confidence 444 56777788888999999999999998753 445677765453
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.50 E-value=5.1e-14 Score=105.30 Aligned_cols=63 Identities=22% Similarity=0.465 Sum_probs=53.2
Q ss_pred EECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC---ch
Q 036458 9 VLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN---GG 85 (445)
Q Consensus 9 IIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~---~~ 85 (445)
|||+|++||++|++|+++|++|+|+|+++++||+++++.. .++.+|.+++++... .+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~~~~~~~~ 60 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI--------------------PGYRFDLGAHYFFPPDDYPN 60 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE--------------------TTEEEETSS-SEEETTSCHH
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE--------------------CCEEEeeccEEEeCCCCchH
Confidence 8999999999999999999999999999999999999988 359999999998763 34
Q ss_pred hHHHhh
Q 036458 86 LVRILI 91 (445)
Q Consensus 86 l~~~l~ 91 (445)
+.+++.
T Consensus 61 ~~~l~~ 66 (68)
T PF13450_consen 61 LFRLLR 66 (68)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444443
No 37
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.46 E-value=2e-12 Score=128.76 Aligned_cols=92 Identities=16% Similarity=0.282 Sum_probs=68.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeE-EecccceeecC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYN-VDMIPKFMMAN 83 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-iDlgp~~l~~~ 83 (445)
+||+|||||++||++|..|++.|++|+|+|+++++||.+.+... .++. .+.|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~--------------------~g~~~~~~G~h~f~t~ 61 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVD--------------------ETILFHQYGPHIFHTN 61 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecC--------------------CCceEEeecceeEecC
Confidence 79999999999999999999999999999999999998877543 2333 48899999865
Q ss_pred ch-hHHHhhhc-cccCceeeEEecceEEEeCCeEEEccCC
Q 036458 84 GG-LVRILIHT-DVTKYLNFKAVDGSFVYNKGKIYKVPAT 121 (445)
Q Consensus 84 ~~-l~~~l~~~-g~~~~l~~~~~~~~~~~~~g~~~~vp~~ 121 (445)
.. ..+.+.+. +.. .+. ....++.+|+.+++|-+
T Consensus 62 ~~~v~~~~~~~~~~~---~~~--~~~~~~~~g~~~~~P~~ 96 (377)
T TIGR00031 62 NQYVWDYISPFFELN---NYQ--HRVLALYNNLDLTLPFN 96 (377)
T ss_pred cHHHHHHHHhhcccc---cee--EEEEEEECCeEEccCCC
Confidence 44 33433332 211 122 12345678999999987
No 38
>PLN02976 amine oxidase
Probab=99.42 E-value=7.3e-12 Score=138.43 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=54.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA 82 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~ 82 (445)
.+||+|||+|++|+++|..|+++|++|+|+|+++++||++.+.... .++.+|+|++|++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G 752 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITG 752 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEec
Confidence 4799999999999999999999999999999999999999886541 36889999999875
No 39
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.42 E-value=5.3e-12 Score=124.65 Aligned_cols=72 Identities=13% Similarity=0.328 Sum_probs=60.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM 81 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~ 81 (445)
+...|+|||||++||+||-+|-..| .+|+|+|+.+|.|||+.|+.+.+ =.||+|++|++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d--------------------~~ielGAqwih 79 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFAD--------------------GVIELGAQWIH 79 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCC--------------------CeEeecceeec
Confidence 4568999999999999999998665 69999999999999999999843 38999999999
Q ss_pred c-Cc-hhHHHhhhcc
Q 036458 82 A-NG-GLVRILIHTD 94 (445)
Q Consensus 82 ~-~~-~l~~~l~~~g 94 (445)
+ .+ ++.++..+.|
T Consensus 80 G~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 80 GEEGNPVYELAKEYG 94 (498)
T ss_pred CCCCChHHHHHHHhC
Confidence 7 55 4555655565
No 40
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=2.1e-11 Score=114.63 Aligned_cols=117 Identities=21% Similarity=0.393 Sum_probs=78.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE-ecccceeec
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV-DMIPKFMMA 82 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Dlgp~~l~~ 82 (445)
.||.+|||+|++|+++|..|++.|++|+|+||++++||.|-+...++ .|-.+ --|||+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~------------------tGIlvHkYGpHIFHT 62 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ------------------TGILVHKYGPHIFHT 62 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC------------------CCeEEeeccCceeec
Confidence 38999999999999999999999999999999999999998876632 22222 348999987
Q ss_pred Cch-hHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccC-chhHHHHHHHHHH
Q 036458 83 NGG-LVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMG-LFEKRRARKFFIY 145 (445)
Q Consensus 83 ~~~-l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~-~~~k~~~~~f~~~ 145 (445)
++. .++.+.. ..||..- .+..-..+|+.+++|.+ ...+. ++++ .+.....++|+..
T Consensus 63 ~~~~Vwdyv~~-----F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~-ql~G~~~~p~~a~~~i~~ 121 (374)
T COG0562 63 DNKRVWDYVNQ-----FTEFNPYQHRVLALVNGQLYPLPFN-LNTIN-QLFGKNFTPDEARKFIEE 121 (374)
T ss_pred CchHHHHHHhh-----hhhhhhhccceeEEECCeeeecccc-HHHHH-HHhCccCCHHHHHHHHHH
Confidence 653 3333321 2233221 12234568999999988 44443 3333 2333345555543
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.25 E-value=5.7e-11 Score=117.83 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=53.1
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
.++|.+| ...+.++|.+.++..|++++.+++|++|..+ ++++.+|.++.+.+.||.||.+++++.
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccc
Confidence 4577888 7889999999999999999999999999984 777888887555599999999988763
No 42
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.20 E-value=5.1e-10 Score=109.13 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=50.2
Q ss_pred EEeC-CCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458 225 IYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS 286 (445)
Q Consensus 225 ~~p~-gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~ 286 (445)
.||. .....|.+++.+.+++.|++++++++|.+|..+ +. ...+. .+|++++||.+|.+.+
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~~-~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-DS-GFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-Cc-eEEEEcCCCCEEEccEEEEecC
Confidence 6888 678999999999999999999999999999984 43 34455 4677899999998754
No 43
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.19 E-value=3.1e-10 Score=114.99 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
++|..| ...+.++|.+.++..|++++++++|.+|..+ ++.+ .|.++++++.||.||.+++.+.
T Consensus 139 ~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 139 FVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred EcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcch
Confidence 456666 4678899999998999999999999999874 4444 4655555799999999888764
No 44
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.18 E-value=3.6e-10 Score=113.28 Aligned_cols=63 Identities=30% Similarity=0.376 Sum_probs=49.8
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeE-EEcCEEEECCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGET-AKCKKVVCDPSYL 288 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~-~~ad~VI~~~~~~ 288 (445)
+.|.+| .+++..+|++.+..+|++++||++|++|....+| ++.+. .+|++ ++|+.||.+++..
T Consensus 143 ~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 143 LVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred EcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchh
Confidence 345555 6789999999999999999999999999985454 33343 46665 9999999988754
No 45
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.13 E-value=6.3e-10 Score=112.34 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=47.3
Q ss_pred eEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCC
Q 036458 224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPS 286 (445)
Q Consensus 224 ~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~ 286 (445)
..||.-. ...+.++|.+.+...|++++++++|++|..+ ++.+..|.+ +++++.||.||.+.+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence 4688875 7889999999999999999999999999984 566677887 889999999998754
No 46
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.07 E-value=3.1e-09 Score=108.31 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=47.6
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eC----CeEEEcCEEEECCCCCC
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SE----GETAKCKKVVCDPSYLP 289 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~----g~~~~ad~VI~~~~~~p 289 (445)
+++|..| ...+.++|.+.++..|++++.+++|++|..+ ++.+...+ .. +.+++||+||.+.+.+.
T Consensus 186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4566654 3456788889999999999999999999874 55443332 22 23789999999988764
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.06 E-value=4.6e-09 Score=105.76 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=47.5
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
+.|.+| ...+.+++.+.++..|++++.+++|++|..+ ++.+ .|.+++.++.||.||.+.+.+.
T Consensus 135 ~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 135 LDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred EcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence 345555 3467888888888899999999999999873 5544 4555555799999998877653
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.05 E-value=3e-09 Score=110.27 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=48.6
Q ss_pred eCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeC-----CeEEEcCEEEECCCCC
Q 036458 227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE-----GETAKCKKVVCDPSYL 288 (445)
Q Consensus 227 p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~-----g~~~~ad~VI~~~~~~ 288 (445)
+.+|...+.+.|.+.++..|++++++++|++|.. +++++++|... ...++|+.||.+.+-+
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 3445567889998888999999999999999998 47888887642 3468999999987644
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.04 E-value=3.9e-09 Score=111.27 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=50.5
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCc
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~ 290 (445)
+++|. | -..+..++++.+..+|++++.+++|++|.. +++++++|.. +| .+++|+.||.+++.|..
T Consensus 139 ~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 139 VKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 35663 4 346778888888899999999999999988 4677777653 23 47999999999988754
No 50
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.00 E-value=1.2e-08 Score=103.79 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
.+.++|++.+...|++++.+++|++|...+++++.+|.++..++.|++||.+++.+
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence 56777888888999999999999999763356677777655579999988776544
No 51
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.00 E-value=1.4e-08 Score=103.67 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=51.7
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
++|..| ...+.++|.+.++..|++|+++++|++|..+ ++++.+|++++.++.||+||.+.+.+.
T Consensus 191 ~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 191 RLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcch
Confidence 456655 3477889998888899999999999999874 566667777777899999999988764
No 52
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=7.4e-10 Score=102.05 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=58.0
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCch
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGG 85 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~~ 85 (445)
+++|||+|++||+||+.|+.+|++|+|+||..=+|||.+|-++. +-.+|.|.+++..+++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~--------------------~g~~DhGAqYfk~~~~ 62 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD--------------------GGRFDHGAQYFKPRDE 62 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC--------------------CccccccceeecCCch
Confidence 69999999999999999999999999999999999999998884 3459999999988776
Q ss_pred hHHHhh
Q 036458 86 LVRILI 91 (445)
Q Consensus 86 l~~~l~ 91 (445)
++-.++
T Consensus 63 ~F~~~V 68 (331)
T COG3380 63 LFLRAV 68 (331)
T ss_pred HHHHHH
Confidence 554443
No 53
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.96 E-value=2.9e-08 Score=99.76 Aligned_cols=63 Identities=27% Similarity=0.274 Sum_probs=46.4
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
+.|..| ...+.+++.+.+...|++++++++|++|..+ ++.+ .|.+++.+++||.||.+.+.+.
T Consensus 139 ~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 139 FEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred EcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCCEEEeeEEEEecCcch
Confidence 345555 2456777777778889999999999999874 5443 4555444799999999887663
No 54
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.93 E-value=3.8e-08 Score=101.97 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=49.3
Q ss_pred EEeCC-C---cchHHHHHHHHHHH----cC--cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLY-G---LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~g-G---~~~L~q~l~r~~~~----~G--g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
+.|.. | .+.+.++|.+.++. .| ++++++++|++|..+ ++..+.|.++..+++||.||.+++.+.
T Consensus 200 ~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 200 YVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYS 273 (497)
T ss_pred EeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhH
Confidence 45644 3 36789999998888 77 678999999999873 455666776555799999999887664
No 55
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.92 E-value=1.4e-08 Score=104.07 Aligned_cols=67 Identities=25% Similarity=0.223 Sum_probs=52.1
Q ss_pred ceEEeCCC--cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCCcc
Q 036458 223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLPDK 291 (445)
Q Consensus 223 ~~~~p~gG--~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~~ 291 (445)
.+.|+-+= -..|.-..++.++.+|++++..++|+++.. +++ +++|.. +|+ +++|+.||.++++|.+.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 45666554 236777778888999999999999999998 466 888874 343 58999999999998654
No 56
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.90 E-value=1.5e-08 Score=106.85 Aligned_cols=42 Identities=29% Similarity=0.522 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+.+|||||||+| +|++||...+++|.+|+|+||++.+||.++
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 458999999999 999999999999999999999999999776
No 57
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.88 E-value=7.9e-08 Score=99.69 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=48.4
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE---eCC--eEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT---SEG--ETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~---~~g--~~~~ad~VI~~~~~~p 289 (445)
+.|..| ...+.++|.+.++..|++++++++|++|..++++.+.... .+| .+++||+||.+++.+.
T Consensus 168 ~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 168 WAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 456666 4688999999998899999999999999874344333221 123 3689999999888764
No 58
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.86 E-value=2e-08 Score=103.94 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=47.4
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
.+.|..| ...+.++|.+.+...|++|+.+++|++|.. ++ .+.|.+++.++.||.||.+.+.+
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDGQVTADKVVLALNAW 236 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCcEEECCEEEEccccc
Confidence 3456666 346889999999999999999999999964 23 24466655579999999886655
No 59
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.86 E-value=3.9e-08 Score=106.29 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=48.4
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p 289 (445)
.++|..| ...+.+++.+.+.. |++++.+++|++|..+ ++.+. |.+ +|..+.||.||.+.+.+.
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 4577777 34788889888877 9999999999999874 55554 554 556678999999887663
No 60
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.86 E-value=1.6e-07 Score=97.51 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=48.2
Q ss_pred EEeCCC---cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~p 289 (445)
+.|.+| .+.+.++|.+.++..| ++++++++|++|..++++.+..... +|+ ++.|++||.+++.+.
T Consensus 173 ~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 173 RIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred EcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 456665 5689999999988887 5999999999998754554433221 343 689999999887764
No 61
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=1.2e-07 Score=90.14 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCcEEEeCCcceeEEE-cCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458 234 LPQAFARLSAVYGGTYMLNKPECKVEF-DGDGKVIGVT-SEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~-~~~g~~~~v~-~~g~~~~ad~VI~~~~~~ 288 (445)
-..+|...++.+|+.++-+..|..+.. ++++..++|. ++|..+.|+.+|.+.+.|
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 346677788999999999999999884 3455566665 588889999999987765
No 62
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.84 E-value=1.4e-07 Score=95.07 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=125.0
Q ss_pred cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF 79 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~ 79 (445)
+.++-|||+|+++|+||..|-|. |.++.+||+.+.+||.+-+....+ +||.+--|-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~------------------~GYv~RgGR~~ 63 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE------------------NGYVIRGGRMM 63 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC------------------CCeeecCCccc
Confidence 45789999999999999999887 569999999999999987655422 56766444222
Q ss_pred eecCchhHHHhhhc------c--c-cCceeeEEecceE-----EEeCCeEEEccCChHHHhhccccCc--hhHHHHHHHH
Q 036458 80 MMANGGLVRILIHT------D--V-TKYLNFKAVDGSF-----VYNKGKIYKVPATDVEALKSPLMGL--FEKRRARKFF 143 (445)
Q Consensus 80 l~~~~~l~~~l~~~------g--~-~~~l~~~~~~~~~-----~~~~g~~~~vp~~~~~~~~~~l~~~--~~k~~~~~f~ 143 (445)
-....-+.++|... | + .++..|...++.+ +..+|+.... ..-+++ .++..+.+++
T Consensus 64 ~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~Ls~k~r~eL~kL~ 134 (500)
T PF06100_consen 64 EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFGLSEKDRMELIKLL 134 (500)
T ss_pred cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCCCCHHHHHHHHHHh
Confidence 11111233333221 1 0 1111111111111 1122322111 111333 3333344432
Q ss_pred HHHHhhhccCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCc
Q 036458 144 IYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSP 223 (445)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~ 223 (445)
.. ++ + .+.+.++.|++..--+..+.- ..+-++..-..+ .++.+.=..+++|+.-+....--+.
T Consensus 135 ---l~-----~E--~--~L~~~~I~d~F~~~FF~SnFW---~~W~T~FAFqpW--hSa~E~rRyl~Rf~h~~~~l~~l~~ 197 (500)
T PF06100_consen 135 ---LT-----PE--E--DLGDKRIEDWFSESFFESNFW---YMWSTMFAFQPW--HSAVEFRRYLHRFIHEIPGLNDLSG 197 (500)
T ss_pred ---cC-----CH--H--HhCcccHHHhcchhhhcCchh---HhHHHhhccCcc--hhHHHHHHHHHHHHHhcCCCCCccc
Confidence 21 11 1 235577777775322222221 123333332222 2444443344445443333211233
Q ss_pred eEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC---cEEEEE--eCCe--EE---EcCEEEECC
Q 036458 224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDG---KVIGVT--SEGE--TA---KCKKVVCDP 285 (445)
Q Consensus 224 ~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g---~~~~v~--~~g~--~~---~ad~VI~~~ 285 (445)
..+.+|- ...|..-+.+.++.+|+.+++|+.|+.|..+.++ .+..+. .+|+ ++ .-|.|+++.
T Consensus 198 l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~ 270 (500)
T PF06100_consen 198 LDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTN 270 (500)
T ss_pred cccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEEC
Confidence 4566776 5678899999999999999999999999975322 233333 2443 33 356777753
No 63
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.83 E-value=8.2e-08 Score=97.23 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p 289 (445)
.|.+.|.+.++..|++++.+++|+++..+ ++.+. ++ .+|++++||.||.+.+..+
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 45566667777789999999999999874 44444 44 4678899999999877654
No 64
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.80 E-value=1.5e-07 Score=94.36 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|||+|||+|++|+++|+.|+++|++|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 65
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.80 E-value=2e-07 Score=96.33 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~~ 44 (445)
+.+||||||||++|+++|+.|++. |.+|+|+||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 468999999999999999999999 999999999778876544
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.80 E-value=3.9e-09 Score=95.12 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++||+|||+|.+||+||++|+++|+||+++|++..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 368999999999999999999999999999999999998764
No 67
>PRK06847 hypothetical protein; Provisional
Probab=98.79 E-value=8.5e-08 Score=96.38 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|.+..||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 888999999999999999999999999999999998764
No 68
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.77 E-value=4.4e-07 Score=96.48 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+.++||+|||+|.+|+++|..++++|++|+++||++..||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 4679999999999999999999999999999999999999865
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.75 E-value=8.6e-09 Score=92.45 Aligned_cols=41 Identities=32% Similarity=0.465 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+-||+|+|+|.+||+||++||++|.||+++||+-++||-++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46999999999999999999999999999999999998764
No 70
>PRK07190 hypothetical protein; Provisional
Probab=98.72 E-value=2.5e-07 Score=96.23 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|++ .+||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 553 489999999999999999999999999999999876
No 71
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.68 E-value=9.1e-07 Score=94.03 Aligned_cols=42 Identities=36% Similarity=0.665 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++||+|||+|.+|++||..++++|++|+++||++..||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999999765
No 72
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.67 E-value=4e-07 Score=92.11 Aligned_cols=58 Identities=21% Similarity=0.108 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458 231 LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p 289 (445)
...|-++|.+.+...+ .+++.+++|+.+..+ ++.+..... +|++++||.||.+.+...
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCch
Confidence 3455666777777666 699999999999985 455554445 889999999999987653
No 73
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.63 E-value=8.9e-07 Score=89.71 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999984
No 74
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.1e-06 Score=93.36 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
..|...|.+.+...|+++++++.|+++..+++|+++|+.. +|+ .+.|+.||++.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 3588888887777899999999999999855788999863 453 578999998754
No 75
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.58 E-value=5.7e-08 Score=99.50 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
+-+.|.+.++..|++++.+++|++|..+ ++++++++++|+++.|+.||.+.+..
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 3345666677789999999999999874 66777777778889999999887654
No 76
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.58 E-value=5.9e-08 Score=92.04 Aligned_cols=40 Identities=35% Similarity=0.567 Sum_probs=38.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
+|||+|||+|++||+||++|+++|++|+++||+..+||..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 6899999999999999999999999999999999998763
No 77
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.57 E-value=6.8e-08 Score=91.85 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
.++||+|||+|++||+||..|+++|++|+++|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 36899999999999999999999999999999999998854
No 78
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.56 E-value=6.4e-08 Score=98.18 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.+|||+|||||++|++||+.|+++|.+|+++||.+.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4699999999999999999999999999999999999987655
No 79
>PRK10015 oxidoreductase; Provisional
Probab=98.54 E-value=8.3e-08 Score=98.30 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=38.1
Q ss_pred CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
|+ ++|||||||+|++|++||+.|+++|++|+++||++++|-.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 65 4699999999999999999999999999999999988643
No 80
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.52 E-value=6.9e-07 Score=91.74 Aligned_cols=64 Identities=14% Similarity=0.065 Sum_probs=51.0
Q ss_pred EEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEe--CCeEEEcCEEEECCCCC
Q 036458 225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTS--EGETAKCKKVVCDPSYL 288 (445)
Q Consensus 225 ~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~--~g~~~~ad~VI~~~~~~ 288 (445)
.+|.++...+.++|.+.++..|++++++++|++|..++ ++++++|.. ++.+++|+.||++.+-+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 35566667899999999999999999999999998753 577887764 34689999999876633
No 81
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.51 E-value=1.5e-06 Score=88.22 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred EEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458 225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY 287 (445)
Q Consensus 225 ~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~ 287 (445)
.||... ..++.+.+.+.++..|++++++++|++|..+ ++ .+.++.+++++.||.||.+.+.
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence 455543 5678899999999999999999999999763 44 3456667778999999998664
No 82
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.51 E-value=1.2e-07 Score=99.30 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=40.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|++.|||||||||++|+++|+.||++|.+|+++||++..+|..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 77889999999999999999999999999999999988777653
No 83
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.49 E-value=1.4e-07 Score=97.29 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=41.4
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|.+..+|+|||||++||+||..|.++|++|+++||++.+||.|.-
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 345689999999999999999999999999999999999999864
No 84
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=1.4e-07 Score=97.95 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=41.7
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|+.+|||+|||+|.+|+.||..|++.|++|+++|+++.+||.|.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 78889999999999999999999999999999999999999763
No 85
>PRK06116 glutathione reductase; Validated
Probab=98.48 E-value=1.3e-07 Score=97.70 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=40.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|+.+|||+|||+|.+|++||..|++.|++|+++|++ .+||.|.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 777899999999999999999999999999999996 8999774
No 86
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.45 E-value=1.9e-07 Score=96.70 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.+|||+|||+|++|+.||..|++.|++|+++|+++.+||.|..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 4799999999999999999999999999999999999998743
No 87
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=2e-07 Score=96.87 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=41.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|...|||+|||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 888999999999999999999999999999999996 88998853
No 88
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.44 E-value=1.9e-07 Score=96.12 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC-CCCcccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY-YGGESTS 45 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~-~GG~~~s 45 (445)
.++|||||||||.+|+.||..|++.|++|+++|+.+. +||.|..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 0469999999999999999999999999999999874 8998853
No 89
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.44 E-value=1.8e-07 Score=92.66 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 589999999999999999999999999999998765
No 90
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=2.2e-07 Score=96.34 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=40.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|. +|||+|||+|.+|++||..+++.|++|+++|+++.+||.|.
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 64 59999999999999999999999999999999899999873
No 91
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.41 E-value=2.8e-07 Score=96.36 Aligned_cols=44 Identities=30% Similarity=0.473 Sum_probs=39.8
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|..+|||+|||||++|+++|+.|+++|.+|+++||++..+|..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 66789999999999999999999999999999999987666543
No 92
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.41 E-value=3.6e-07 Score=93.77 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCCCCCcccccchhh
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAYYGGESTSLNLTQ 50 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~GG~~~s~~~~~ 50 (445)
.+.+||+|||||++|+++|++|.++|.. +++|||++.+||.|...+..+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 4679999999999999999999999998 999999999999988765533
No 93
>PRK06370 mercuric reductase; Validated
Probab=98.40 E-value=3e-07 Score=95.28 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=39.4
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|..+|||+|||+|.+|++||..|++.|++|+++|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 778899999999999999999999999999999996 6777764
No 94
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=2.9e-07 Score=94.72 Aligned_cols=43 Identities=35% Similarity=0.529 Sum_probs=39.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC-CCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY-YGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~-~GG~~~ 44 (445)
|. +|||+|||||.+|++||..|++.|++|+++||++. +||.|-
T Consensus 1 ~~-~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 1 ML-TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CC-ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 64 69999999999999999999999999999999975 799763
No 95
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=3.8e-07 Score=94.81 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=41.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEec------CCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDR------NAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~------n~~~GG~~~s 45 (445)
|+.+||+||||+|.+|++||.+|++.|++|+++|+ +..+||.|..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 88899999999999999999999999999999998 4789998854
No 96
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.37 E-value=4.1e-07 Score=87.81 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
|||+|||||++||++|..|++.|.+|+|+||++.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999998765
No 97
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.36 E-value=3.6e-07 Score=93.63 Aligned_cols=40 Identities=33% Similarity=0.520 Sum_probs=34.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
||||||||++|++||..+||+|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 98
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.36 E-value=2.1e-05 Score=79.96 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG--ETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g--~~~~ad~VI~~~~~~ 288 (445)
++.+.|.+.++..|+++++++.|.++..+ ++++..+.. +| ..++||.||++.+.+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 78899999998999999999999999874 566666543 44 458999999887654
No 99
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=4.6e-07 Score=93.94 Aligned_cols=44 Identities=32% Similarity=0.526 Sum_probs=39.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|.++|||+|||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 566799999999999999999999999999999985 78887754
No 100
>PLN02985 squalene monooxygenase
Probab=98.35 E-value=1.3e-06 Score=91.32 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..+||+|||||++||++|..|+++|++|+++||...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 468999999999999999999999999999999753
No 101
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.34 E-value=4.5e-07 Score=95.94 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=40.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|...|||+|||||.+||+||..|++.|++|+++|++ .+||.+..
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 788899999999999999999999999999999996 68997653
No 102
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.34 E-value=5e-07 Score=92.14 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|+..+||+|||||++||++|..|+++|++|+|+||++..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345799999999999999999999999999999999865
No 103
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.33 E-value=5.4e-07 Score=95.30 Aligned_cols=44 Identities=36% Similarity=0.570 Sum_probs=41.3
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC--CCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA--YYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~--~~GG~~~ 44 (445)
|..++||||||+|++||+||..++++|.+|+||||++ .+||.++
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 7788999999999999999999999999999999999 8899664
No 104
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.33 E-value=5.6e-07 Score=94.20 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+.++||||||+|.+|++||..++++|.+|+||||++..||...
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 3578999999999999999999999999999999999999653
No 105
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=5.1e-07 Score=93.50 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
+.+|||+|||+|++|++||..|++.|++|+++|++. +||.|..
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 467999999999999999999999999999999988 9998754
No 106
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.32 E-value=1.1e-06 Score=85.14 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
..+||||||||++|+++|+.|+|.|.+|+|+||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 5689999999999999999999999999999997
No 107
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.32 E-value=5.7e-07 Score=93.13 Aligned_cols=41 Identities=32% Similarity=0.528 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.|||+|||+|++|+.||..|++.|++|+++|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 899998754
No 108
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.31 E-value=5.2e-07 Score=93.02 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=37.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+|||+|||+|.+|++||..+++.|++|+++|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 69999999999999999999999999999999 58999876
No 109
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.31 E-value=5.7e-07 Score=94.19 Aligned_cols=42 Identities=36% Similarity=0.492 Sum_probs=38.1
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGE 42 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~ 42 (445)
|..+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 566799999999999999999999999999999998 477763
No 110
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.31 E-value=2.8e-06 Score=87.45 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=55.1
Q ss_pred EeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCcc
Q 036458 226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDK 291 (445)
Q Consensus 226 ~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~ 291 (445)
.|.-| -..++|++++.+..+|+.|..|++|++|.. +.++..+|.+.-..++|.+||.+++.|...
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSIETECVVNAAGVWARE 245 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcceecceEEechhHHHHH
Confidence 46666 346899999999999999999999999998 566677998876779999999999998643
No 111
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=1.2e-05 Score=80.91 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEECCCCC-Cc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG--ETAKCKKVVCDPSYL-PD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g--~~~~ad~VI~~~~~~-p~ 290 (445)
..|.++|.+.++.+||+++.+++|.++.. +++++.+|.+ ++ .+++||+||.+++.| ..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 36888999999999999999999999988 4777887774 44 489999999988877 54
No 112
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=6.3e-07 Score=90.79 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=36.7
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|.+..||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 778899999999999999999999999999999999754
No 113
>PRK07121 hypothetical protein; Validated
Probab=98.30 E-value=7.1e-07 Score=93.21 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEc-CEEEECCCCC
Q 036458 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKC-KKVVCDPSYL 288 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~a-d~VI~~~~~~ 288 (445)
...+.+.|.+.++..|++++++++|++|..+++|++++|.. ++ ..++| +.||.+.+-+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 45688899998899999999999999999855678888863 33 35788 9999887654
No 114
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.30 E-value=5.8e-07 Score=92.72 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
++|||+|||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 4699999999999999999999999999999995 6899774
No 115
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.30 E-value=6.9e-07 Score=90.29 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
.+.+||+|||+|++||++|..|+++|++|+|+|+++.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 34689999999999999999999999999999999765
No 116
>PRK09126 hypothetical protein; Provisional
Probab=98.29 E-value=7e-07 Score=90.33 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=35.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
|. ++||+|||||++||++|..|+++|++|+|+||.+.++
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 39 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA 39 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 55 5999999999999999999999999999999998753
No 117
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.28 E-value=5.9e-07 Score=82.04 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=32.6
Q ss_pred EEECCChhHHHHHHHhhhCCCe-EEEEecCCCCCCcccc
Q 036458 8 IVLGTGLKECILSGVLSVDGLK-VLHMDRNAYYGGESTS 45 (445)
Q Consensus 8 iIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~GG~~~s 45 (445)
+|||||++||++|+.|.+.|.+ |+++|+++.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999874
No 118
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=8.3e-07 Score=91.91 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
++|||||||+|.+|++||..|++.|++|+++|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 359999999999999999999999999999999 78999875
No 119
>PRK08013 oxidoreductase; Provisional
Probab=98.28 E-value=8.4e-07 Score=90.14 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|+ ++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 55 499999999999999999999999999999999864
No 120
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.28 E-value=7.5e-07 Score=89.99 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|+ .+||+|||||++||++|..|+++|++|+++|+.+
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 77 4999999999999999999999999999999875
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.27 E-value=8.7e-07 Score=89.32 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=48.3
Q ss_pred EEeCCC---cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
++|..| ...+.+++++.+...| ..+..+++|..+..+ . +..+|.+++.++.|++||.+.+.+.
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~ 212 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWA 212 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHH
Confidence 456666 3468899999999999 566669999999773 3 5677777655599999999988663
No 122
>PRK07045 putative monooxygenase; Reviewed
Probab=98.26 E-value=8.8e-07 Score=89.56 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.9
Q ss_pred CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|. ..+||+|||||++||++|..|+++|++|+|+||++..
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 44 6789999999999999999999999999999999854
No 123
>PRK13748 putative mercuric reductase; Provisional
Probab=98.25 E-value=9.1e-07 Score=93.93 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
++|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999998 89998753
No 124
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.25 E-value=1e-06 Score=92.08 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.++..|.++++++.|.+|... ++.+.....+|+++.+|.||.+.+..|.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 46677778888899999999999999763 3333322347888999999998877664
No 125
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.25 E-value=9.4e-07 Score=90.92 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.+|||+|||||++|++||..|+++|++|+++|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46999999999999999999999999999999985
No 126
>PRK06185 hypothetical protein; Provisional
Probab=98.24 E-value=9.9e-07 Score=89.74 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=35.1
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|.+++||+|||||++||++|..|+++|++|+++|+++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34679999999999999999999999999999999864
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.24 E-value=1e-06 Score=85.36 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=36.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|||+|||||++||+||..|++.|++|+++|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 799999999999999999999999999999997 7887653
No 128
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.24 E-value=9.7e-07 Score=87.73 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=41.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccch
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNL 48 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~ 48 (445)
-+++|||||++|++||..||+.|++|.++||++..||+.+.++.
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k 168 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNK 168 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhc
Confidence 47999999999999999999999999999999999999887663
No 129
>PLN02661 Putative thiazole synthesis
Probab=98.23 E-value=1.1e-06 Score=86.20 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=36.5
Q ss_pred cccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGE 42 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~ 42 (445)
++||+|||+|++||+||+.|+++ |++|+++||+..+||.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 58999999999999999999986 8999999999999873
No 130
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.23 E-value=1e-06 Score=90.00 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL 288 (445)
Q Consensus 230 G~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~ 288 (445)
+...+.+.+.+.++++|++|+++++|+++.++ +++++|+.. +|+ +++|+.||.+.+-+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 45678899999999999999999999999994 889999873 354 57899999887654
No 131
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.23 E-value=1.1e-06 Score=89.48 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=33.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
|.+.+||+|||||++||++|..|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 455799999999999999999999999999999997
No 132
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.22 E-value=1.3e-06 Score=88.34 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
|||+|||||++|++||..|+++|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 133
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.22 E-value=1.2e-06 Score=91.81 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=38.5
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|.++||||||+| +||+||+.++++|.+|+||||++.+||.++
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 357899999999 999999999999999999999999998653
No 134
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.22 E-value=1.1e-06 Score=85.49 Aligned_cols=39 Identities=33% Similarity=0.565 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGES 43 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~ 43 (445)
||+||||+|.+|+++|.+||++| ++|+|||+.+++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 89999999999999999999998 6999999999887666
No 135
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.21 E-value=1.4e-06 Score=88.39 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
+||+|||||++|++||..|+++|++|+++||+...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 6999999999999999999999999999999865543
No 136
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.20 E-value=1.5e-06 Score=88.84 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=42.4
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|..+||+||||+|.+|..||.++++.|++|.++|+...+||.|-.
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 677899999999999999999999999999999999999998854
No 137
>PRK14694 putative mercuric reductase; Provisional
Probab=98.20 E-value=1.5e-06 Score=90.24 Aligned_cols=57 Identities=9% Similarity=0.172 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.++++++.|++|..+ ++. ..+..+++++.+|.||.+.+..|.
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence 467788888888999999999999999763 433 335555567999999998876653
No 138
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.19 E-value=1.4e-06 Score=87.69 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
.+.+.|.+.+...| ++++.+++|++|..+ ++.+.....+|+++.||.||.+.+..
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 45666777777777 899999999999874 45443223578889999999877654
No 139
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=2e-05 Score=81.20 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY 287 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~ 287 (445)
..+-+.|.+.+...|++++.++ |+++..+++|.+.+|+. +|++++||.||=+.+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 4566778888889999998774 88888777888888875 7889999999976553
No 140
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=87.51 Aligned_cols=38 Identities=32% Similarity=0.421 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
..+||+|||||++||++|..|++.|++|+|+||++.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 46899999999999999999999999999999998754
No 141
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=1.5e-06 Score=92.34 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=39.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++.++||||||+|++||+||..++++|.+|+||||++..||.+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 3567999999999999999999999999999999999999853
No 142
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.18 E-value=1.4e-06 Score=88.09 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
+.|||+|||||++||++|..|+++|++|+++|+++.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 569999999999999999999999999999999863
No 143
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.18 E-value=1.7e-06 Score=95.74 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=39.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.++|+|||||++||+||+.|++.|++|+|+|+++.+||..+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 579999999999999999999999999999999999999753
No 144
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.17 E-value=1.9e-06 Score=91.21 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
+.++||||||+|.+|++||..|+++|.+|+||||++.+||.+
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 457999999999999999999999999999999999999965
No 145
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=1.7e-06 Score=88.02 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=41.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL 46 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 46 (445)
...+|+|||||.+||++|..|.++|++|+++||.+.+||.|.--
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 46799999999999999999999999999999999999999754
No 146
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=2.5e-06 Score=90.25 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
.++||+|||||++||++|..|++.|++|+|+||++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 5689999999999999999999999999999999854
No 147
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.16 E-value=2.1e-06 Score=91.99 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEe----CCe--EEEcCEEEECCCCCCc
Q 036458 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTS----EGE--TAKCKKVVCDPSYLPD 290 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~ 290 (445)
-..+..++++.++..|++++.+++|++|..++ ++++++|.. +++ ++.||.||.+++.|.+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 34688889999999999999999999998743 467777652 344 6899999999988854
No 148
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.16 E-value=1.9e-06 Score=89.33 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=36.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|||||||+|.+|++||..|++.|++|+++|++. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999986 888764
No 149
>PTZ00058 glutathione reductase; Provisional
Probab=98.16 E-value=2e-06 Score=90.71 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.+|||||||+|.+|+.||..+++.|++|+++|++ .+||.|-.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 4699999999999999999999999999999996 79998743
No 150
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.16 E-value=1.7e-06 Score=87.95 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
.+-++|.+.++..|++++.+++|++|..+ ++.+.....+|++++||.||.+.+...
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 44556666666778999999999999874 444432235778899999999877653
No 151
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.16 E-value=2.2e-06 Score=91.17 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++||||||+|++||+||..++++|.+|+++||++..||..+
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999998764
No 152
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.15 E-value=5.6e-05 Score=75.83 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEE-EE--e--CCeEEEcCEEEECCC
Q 036458 231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIG-VT--S--EGETAKCKKVVCDPS 286 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~-v~--~--~g~~~~ad~VI~~~~ 286 (445)
.|+|.+.|.+.+... |.+++++++|++|.+..+|.... +. . +..++.|+.|++.++
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 789999999988877 88999999999999976775432 22 1 336899999998664
No 153
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.15 E-value=2.2e-06 Score=88.26 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~ 288 (445)
.++.+.|.+.++..|++++++++|++|..++++++++|.. +++ .+.++.||.+.+-+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4688899999999999999999999999865678887753 343 47899999877644
No 154
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.15 E-value=2e-06 Score=95.67 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=39.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..+|+|||+|++||+||..|+++|++|+|+|+++.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 47899999999999999999999999999999999999865
No 155
>PRK06184 hypothetical protein; Provisional
Probab=98.14 E-value=2.4e-06 Score=89.44 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|. ++||+|||||++||++|..|+++|.+|+|+||++.+
T Consensus 1 ~~-~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 1 YT-TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CC-CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 44 589999999999999999999999999999999765
No 156
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.14 E-value=2.2e-06 Score=87.98 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
|..++||||||+|.+||+||..++ +|.+|+++||.+..||..
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence 777899999999999999999975 799999999999988753
No 157
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.13 E-value=2.3e-06 Score=86.46 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=34.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
||||||||++|+++|+.|+++|++|+++|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999877753
No 158
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.12 E-value=2.3e-06 Score=86.59 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999984
No 159
>PRK12831 putative oxidoreductase; Provisional
Probab=98.12 E-value=2.8e-06 Score=87.95 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..||+|||+|++||+||..|++.|++|+++|+++.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999874
No 160
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.12 E-value=3.8e-06 Score=88.73 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
.+||+|||+|++||++|..|++.|++|+|+||++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6899999999999999999999999999999998664
No 161
>PRK14727 putative mercuric reductase; Provisional
Probab=98.10 E-value=2.8e-06 Score=88.39 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=40.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
.+|||||||+|.+|+++|..|++.|++|+++|+++.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3599999999999999999999999999999999999999864
No 162
>PRK07236 hypothetical protein; Provisional
Probab=98.10 E-value=3e-06 Score=85.69 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..||+|||||++||++|..|+++|++|+|+||++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 48999999999999999999999999999999864
No 163
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.09 E-value=2.9e-06 Score=85.48 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
.++.+.|.+.+.. .|++++++++|++|..+ ++.+.....+|+++.||.||.+.+..
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEECCCCEEEeeEEEEecCCC
Confidence 3566777777776 48999999999999874 44443333577789999999987754
No 164
>PRK12839 hypothetical protein; Provisional
Probab=98.09 E-value=3.6e-06 Score=89.18 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=40.7
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
|+.++||+|||+|.+|++||+.|+++|.+|+++||+...||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 34679999999999999999999999999999999999999765
No 165
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.5e-06 Score=81.91 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN 47 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~ 47 (445)
+.|||||||+|++||+||.+++|+|.++.+++....+||......
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 469999999999999999999999999777777778887766555
No 166
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.06 E-value=3.9e-06 Score=84.94 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhC---CCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVD---GLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~---G~~VlvlE~n~ 37 (445)
|+ .+||+|||||++||++|..|+++ |.+|+|+||+.
T Consensus 1 m~-~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 1 MS-RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CC-cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 54 59999999999999999999998 99999999963
No 167
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=4.4e-06 Score=88.57 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=38.9
Q ss_pred CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
|+ .++||||||+|++||.||..++++|.+|+++||....||.+
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 66 46899999999999999999999999999999998877744
No 168
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.05 E-value=4.5e-06 Score=88.40 Aligned_cols=42 Identities=26% Similarity=0.594 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+++||+|||+|.+|++||..++++|.+|++|||++.+||.++
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 579999999999999999999999999999999999998653
No 169
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.05 E-value=3.9e-06 Score=86.31 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHhhh----CCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSV----DGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~n~~ 38 (445)
|||+|||||++||++|..|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 170
>PLN02507 glutathione reductase
Probab=98.05 E-value=4.5e-06 Score=87.22 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+.+..|.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 356666777788899999999999999863 3433323346788999999998877654
No 171
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=4.5e-06 Score=86.75 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.++++++.|++|..++++. ..+. .+|+++.+|.||.+.+..|.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 4677788888888999999999999998643432 3343 46778999999998776653
No 172
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.05 E-value=3.8e-06 Score=84.55 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+||+|||||++|+++|..|+++|++|+|+|+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 173
>PRK06753 hypothetical protein; Provisional
Probab=98.04 E-value=4.2e-06 Score=84.06 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=33.1
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 79999999999999999999999999999998753
No 174
>PLN02463 lycopene beta cyclase
Probab=98.03 E-value=4.6e-06 Score=85.63 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|||+|||||++||++|..|+++|++|+++|+++.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 358999999999999999999999999999999753
No 175
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.03 E-value=5.1e-06 Score=87.63 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
.++||+|||+|++||.||..++++|.+|+++||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999988774
No 176
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.03 E-value=5.3e-06 Score=91.59 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 3468999999999999999999999999999999999998753
No 177
>PRK08244 hypothetical protein; Provisional
Probab=98.03 E-value=4.7e-06 Score=87.05 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
++||+|||||++||++|..|++.|.+|+|+||++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999998653
No 178
>PRK06126 hypothetical protein; Provisional
Probab=98.02 E-value=5.1e-06 Score=87.95 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.++||+|||||++||++|..|++.|++|+|+||++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 458999999999999999999999999999999863
No 179
>PRK02106 choline dehydrogenase; Validated
Probab=98.02 E-value=5e-06 Score=88.22 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=35.4
Q ss_pred CCCcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~ 38 (445)
|..+||+||||+|.+|+++|.+||+ .|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 5678999999999999999999999 8999999999965
No 180
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.01 E-value=5.1e-06 Score=84.33 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
..+.+.|.+.+...|++++.+++|++|..+ ++.+.....+|+++.||.||.+.+..+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 356677777777789999999999999874 444433335788899999999877653
No 181
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.01 E-value=4.1e-05 Score=78.92 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.+++++++|++|.. ++++..+..+++++.||.||.+++..|.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 45777777888899999999999999954 4455566667778999999999887663
No 182
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.00 E-value=6.2e-06 Score=89.07 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..+|+|||+|++||+||..|++.|++|+|+|+++.+||..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999864
No 183
>PRK11445 putative oxidoreductase; Provisional
Probab=98.00 E-value=5.6e-06 Score=82.61 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
.|||+|||+|++||++|..|+++ ++|+++|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999864
No 184
>PRK06834 hypothetical protein; Provisional
Probab=98.00 E-value=6.6e-06 Score=85.68 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
+.+||+|||+|++||++|..|+++|.+|+|+||++.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 358999999999999999999999999999999975
No 185
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.99 E-value=6.2e-06 Score=86.36 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 46999999999999999999999999999999999999963
No 186
>PTZ00367 squalene epoxidase; Provisional
Probab=97.99 E-value=5.8e-06 Score=87.19 Aligned_cols=35 Identities=40% Similarity=0.655 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..+||||||||++|+++|..|+++|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999985
No 187
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.99 E-value=6.9e-06 Score=78.21 Aligned_cols=40 Identities=35% Similarity=0.582 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC--CCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY--YGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~--~GG~~ 43 (445)
.+||||||+|++||.||+.||.+|++|+++|+... +||.+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 58999999999999999999999999999987653 66654
No 188
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.99 E-value=7e-06 Score=84.69 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+.++|+|||+|.+||++|..|++.|++|+++|+++.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 457999999999999999999999999999999999999763
No 189
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.98 E-value=6.6e-06 Score=92.65 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=40.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
..+||+|||||++||+||.+|++.|++|+++|+++.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3689999999999999999999999999999999999998753
No 190
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.98 E-value=6.9e-06 Score=88.13 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~ 38 (445)
|.+++||+|||||++||++|..|++ .|.+|+|+|+++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5678999999999999999999999 5999999999864
No 191
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.98 E-value=7.4e-06 Score=82.28 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=34.8
Q ss_pred cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCc
Q 036458 6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGE 42 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~ 42 (445)
||+|||||++||++|+.|+++ |++|+++|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999987764
No 192
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.98 E-value=8.1e-06 Score=82.96 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
-+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 47999999999999999999999999999998754
No 193
>PRK07538 hypothetical protein; Provisional
Probab=97.98 E-value=6.5e-06 Score=84.00 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 7999999999999999999999999999998754
No 194
>PLN02697 lycopene epsilon cyclase
Probab=97.98 E-value=7.7e-06 Score=85.42 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|||+|||+|++||++|..|++.|++|+++|+...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p 142 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 142 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence 469999999999999999999999999999998633
No 195
>PLN02546 glutathione reductase
Probab=97.97 E-value=7.7e-06 Score=86.26 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=37.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecC---------CCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN---------AYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n---------~~~GG~~~s 45 (445)
+|||+|||+|.+|..||..|++.|++|+++|++ ..+||.|-.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 599999999999999999999999999999973 578997753
No 196
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.97 E-value=7e-06 Score=92.19 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..+|+|||||++||+||..|++.|++|+|+|+.+++||..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 357999999999999999999999999999999999999764
No 197
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.97 E-value=7.6e-06 Score=87.54 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
..|.+.|.+.+...|++++.++.|+++..+++|++.||.. +|+ .+.|+.||.+.+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 3688888888888999999999999998745788988862 453 678999998653
No 198
>PRK10262 thioredoxin reductase; Provisional
Probab=97.95 E-value=8.7e-06 Score=80.15 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
+.+||+|||+|++||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887654
No 199
>PRK07588 hypothetical protein; Provisional
Probab=97.95 E-value=7.6e-06 Score=82.82 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.||+|||||++||++|..|+++|++|+++||.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999999864
No 200
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.94 E-value=0.0002 Score=71.42 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~ 288 (445)
+-.+.+.+.+.+..+|++|++++.|.+|.. +++.+.+|. ++|+++.||+||.+++--
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 456678888889999999999999999998 566666776 578899999999998743
No 201
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.94 E-value=1e-05 Score=79.51 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=37.2
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN 47 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~ 47 (445)
+-+||||||||+||++|..|+|.|.+|+|+|++.-+=|.-++++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~ 45 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSIN 45 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCccee
Confidence 45899999999999999999999999999999877655544433
No 202
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=9.1e-06 Score=86.58 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++||||||+|++||+||..++++|.+|+|+||....||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 5799999999999999999999999999999999877743
No 203
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.94 E-value=9.6e-06 Score=89.03 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
...+|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999864
No 204
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.94 E-value=9.1e-06 Score=85.37 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..|||+|||||++|++||.+|++.|++|+++|+. +||.+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 3589999999999999999999999999999864 999875
No 205
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=9.2e-06 Score=87.11 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=36.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
++||||||+|++||.||..++++|.+|+++||+...||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876653
No 206
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.93 E-value=9.6e-06 Score=81.64 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHh--hhCCCeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVL--SVDGLKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~L--a~~G~~VlvlE~n~~~ 39 (445)
||||||+|++||++|.+| ++.|++|+++|++..+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 207
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.93 E-value=9.5e-06 Score=86.86 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~~~ 44 (445)
.+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 3799999999999999999999999999999984 47999874
No 208
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.93 E-value=1.1e-05 Score=83.84 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999754
No 209
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.93 E-value=9.1e-06 Score=85.84 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHc-CcEEEeCCcceeEEEcC-CCcEEEEEe--CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDG-DGKVIGVTS--EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~-~g~~~~v~~--~g~--~~~ad~VI~~~~ 286 (445)
..+..+|.+.++.. |+++++++.|+++..++ +|+++|+.. +|+ .+.|+.||++.+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG 194 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG 194 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence 46788888877654 89999999999998853 378888863 454 478999998754
No 210
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.93 E-value=9.2e-06 Score=87.05 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
.+|.++|.+.+...|.+++.++.++++..+++|++.|+.. +|+ .+.|+.||.+.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 3678888888878899999999999988754678888863 453 678999998754
No 211
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=9.5e-06 Score=86.57 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
.|.++|.+.+...|++++.++.|+++..+++|+++||.. +|+ .+.|+.||++.+
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 588888888888899999999999999854478988863 453 688999998764
No 212
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=1.1e-05 Score=85.94 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
..|.+.|.+.+...|.+++.++.|+++..+++|++.||.. +|+ .+.|+.||.+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 3588888888888899999999999999854678888853 343 578999998754
No 213
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1e-05 Score=86.89 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=36.8
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++||+|||+|++||+||..++++|.+|+|+||+..+|+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~ 74 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAH 74 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Confidence 5899999999999999999999999999999998887543
No 214
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.90 E-value=1.1e-05 Score=85.97 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+..+|+|||||++||++|..|+++|++|+|+||++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 215
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.90 E-value=1.2e-05 Score=83.88 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=37.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
|||+|||+|++|+++|..|+++|++|+++|+....||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 799999999999999999999999999999999999865
No 216
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.90 E-value=1.3e-05 Score=80.70 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
.||+|||||++||.||+.|++.|++|+++|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5899999999999999999999999999998876543
No 217
>PRK05868 hypothetical protein; Validated
Probab=97.89 E-value=1.2e-05 Score=81.00 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
.||+|||+|++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 38999999999999999999999999999998764
No 218
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.89 E-value=1.4e-05 Score=82.54 Aligned_cols=42 Identities=26% Similarity=0.217 Sum_probs=38.9
Q ss_pred cccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~s 45 (445)
..+|+|||+|++||.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999987 79999999999999998864
No 219
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.88 E-value=1.3e-05 Score=86.37 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=38.8
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..+|+|||+|++||++|..|++.|++|+++|+++++||.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999864
No 220
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.88 E-value=1.3e-05 Score=86.41 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
|++ ++||+|||+|++||.||..++++|.+|+|+||.+..||.+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s 44 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHS 44 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcch
Confidence 553 5899999999999999999999999999999998877643
No 221
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.88 E-value=1.3e-05 Score=81.72 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYG 40 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~G 40 (445)
+|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987654
No 222
>PLN02815 L-aspartate oxidase
Probab=97.87 E-value=1.3e-05 Score=85.13 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++||+|||+|++||.||..++++| +|+|+||....||..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 899999999988843
No 223
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.86 E-value=1.6e-05 Score=85.69 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..+|+|||+|++||++|..|++.|++|+++|+++.+||.++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 357899999999999999999999999999999999999864
No 224
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.3e-05 Score=85.30 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSY 287 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~ 287 (445)
..|.+.|.+.+...|.+++.++.|+++.. ++|++.|+.. +|+ .+.|+.||.+.+-
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 46888898888888999999999999988 4788887752 453 5899999987653
No 225
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.86 E-value=1.5e-05 Score=84.82 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
.+.+.|.+.+...|++++.++.|++|..+ +|++.|+.. +|+ .+.|+.||.+.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 188 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG 188 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence 57788888887889999999999999984 788888752 454 589999998765
No 226
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.86 E-value=2.6e-05 Score=78.71 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCCcccccc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLPDKVQKV 295 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~~~~~~ 295 (445)
.+.-+++=-++.+|+++.-..+|.++..++++++.|++. .|+ .|+|+.||.+.+++.+..+++
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence 355555555678899999999999999887888877753 454 578999999999887665543
No 227
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.85 E-value=1.7e-05 Score=82.12 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 47899999999999999999999999999999999999753
No 228
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.85 E-value=1.5e-05 Score=80.66 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=33.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
||+|||||++||.||..|++.|++|+++|+++..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999887655
No 229
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=1.6e-05 Score=84.72 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCC-cccEEEECCChhHHHHHHHhhhCC---CeEEEEecCCCCCCcc
Q 036458 1 MDE-DYDVIVLGTGLKECILSGVLSVDG---LKVLHMDRNAYYGGES 43 (445)
Q Consensus 1 m~~-~~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~n~~~GG~~ 43 (445)
|+. ++||+|||+|++||+||..++++| .+|+++||+...||.+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 453 589999999999999999999998 8999999999887744
No 230
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.84 E-value=1.9e-05 Score=81.91 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 357899999999999999999999999999999999999764
No 231
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.84 E-value=1.7e-05 Score=83.22 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.|||+|||||.+|++||.+|++.|++|+++|. ++||.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 59999999999999999999999999999985 6999875
No 232
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.84 E-value=1.7e-05 Score=82.71 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~ad~VI~~~~~~ 288 (445)
..|.+.|.+.++. .|.+++.++.|++|..+ ++++.++.. .+ ..+.|+.||.+.+-+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 4688888888876 58999999999999874 677887763 23 468999999876543
No 233
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.83 E-value=1.5e-05 Score=84.00 Aligned_cols=36 Identities=33% Similarity=0.625 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
|..+||+||||+|.+|+++|..|+..|++|++||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 557899999999999999999999999999999997
No 234
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.81 E-value=1.8e-05 Score=90.46 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=38.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
++||||||+|.+||+||...+++|.+|+++||.+..||.++
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 58999999999999999999999999999999999999753
No 235
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.80 E-value=2.1e-05 Score=83.71 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCC---CcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGD---GKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~---g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
..|.+.|.+.+...|.+++.++.|++|..+++ |++.|+.. +|+ .+.|+.||.+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 203 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG 203 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence 46788888888888999999999999987532 78888853 454 578999998754
No 236
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.79 E-value=1.9e-05 Score=78.72 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEE-ecCCCCCCcc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHM-DRNAYYGGES 43 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~Vlvl-E~n~~~GG~~ 43 (445)
||||||||++||.||+.+|+.|.+|+++ ++.+.+|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~ 39 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS 39 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc
Confidence 8999999999999999999999999999 5555555443
No 237
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.78 E-value=2.4e-05 Score=81.40 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=37.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecC-----C---CCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-----A---YYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-----~---~~GG~~~ 44 (445)
+||+||||+|.+|+.||..+++.|++|+++|+. . .+||.|-
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 599999999999999999999999999999974 2 5899764
No 238
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.77 E-value=2.5e-05 Score=83.57 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGG 41 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG 41 (445)
++||||||+|.+||.||..++++ |.+|+++||+...|+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 58999999999999999999998 999999999987544
No 239
>PRK06996 hypothetical protein; Provisional
Probab=97.76 E-value=2.7e-05 Score=79.02 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHhhhCC----CeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDG----LKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~n~~ 38 (445)
.++||+|||||++|+++|..|+++| ++|+++|+.+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4689999999999999999999997 47999999865
No 240
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.76 E-value=2.6e-05 Score=81.73 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++||+|||+|.+||.||..+++ |.+|+++||.+..||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 6899999999999999999976 99999999999988754
No 241
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.75 E-value=2.5e-05 Score=74.42 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCe--EEEcCEEEE-CCCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGE--TAKCKKVVC-DPSYLP 289 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~--~~~ad~VI~-~~~~~p 289 (445)
.+-+.+.+.....||.++.+-+|.+... .++++..|-+ ++. .++||..|. +.+++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeecccccc
Confidence 5778898999999999999999999998 5888888865 443 467885555 566764
No 242
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.75 E-value=2.7e-05 Score=82.34 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE----eCCe--EEEcCEEEECCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT----SEGE--TAKCKKVVCDPSY 287 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~----~~g~--~~~ad~VI~~~~~ 287 (445)
.++...|.+.+...|+++++++.|+++..+++++++|+. .+|+ .+.|+.||.+.+-
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 467788888777789999999999999885444488765 2453 5899999987653
No 243
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.75 E-value=3.3e-05 Score=79.05 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHHh-hhCCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVL-SVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~L-a~~G~~VlvlE~n~~~GG~~~s 45 (445)
...|+|||+|++||.||..| ++.|++|+++|+.+.+||.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 35799999999999999965 5779999999999999999874
No 244
>PRK08275 putative oxidoreductase; Provisional
Probab=97.74 E-value=2.9e-05 Score=82.25 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
.++.+.|.+.++..|++++.++.|++|..++++++.|+.. +|+ .+.|+.||.+.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 3677888888888899999999999998844678888752 454 588999998754
No 245
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.74 E-value=5.4e-05 Score=58.30 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
.|+|||+|+.|+-+|..|++.|++|+++++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999999988
No 246
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.73 E-value=3.3e-05 Score=81.48 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
.++||||||+|++||.||..+++. .+|+++||....||..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 468999999999999999999986 8999999999888853
No 247
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.72 E-value=3e-05 Score=82.52 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~ 43 (445)
.++||+|||+|++||.||..++++| .+|+++||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 3589999999999999999999874 7999999998888744
No 248
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.72 E-value=3.5e-05 Score=81.01 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
|..++||||||+|.+||.||..++.+|.+|+++||....||....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 346799999999999999999999999999999999999966543
No 249
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.70 E-value=4.5e-05 Score=76.17 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
...+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 346899999999999999999999999999999999999764
No 250
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.69 E-value=3.6e-05 Score=81.81 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES 43 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~ 43 (445)
++||+|||+|++||.||..++++ |.+|+++||+...||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 57999999999888854
No 251
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.69 E-value=4.5e-05 Score=79.43 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..+|+|||+|++|+++|..|++.|++|+++|+.+++||...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 36999999999999999999999999999999999999764
No 252
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=4.4e-05 Score=79.00 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC--eEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG--ETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g--~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.++++++.|++|..+ ++. ..+..+| +++.+|.||.+.+..|.
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence 357777778888899999999999999763 332 3344444 46899999998876664
No 253
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.66 E-value=4.7e-05 Score=78.98 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
..+.+.|.+.+...|++++.+ .|+.+.. ++++++++..+++.++|+.||.+.+-+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFLDGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEECCEEEEeCeEEECCCcC
Confidence 368889988888889999765 7888877 477888888888889999999987654
No 254
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=4e-05 Score=78.52 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..|.|||+|++||+||..|+++|++|+++|+.+..||+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 5799999999999999999999999999999999999986
No 255
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.64 E-value=5.4e-05 Score=68.81 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
||+|||||.+|+.||..|++.|.+|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999977754
No 256
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.61 E-value=6.8e-05 Score=79.70 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..+|+|||+|++||++|..|++.|++|+++|+++.+||...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 46899999999999999999999999999999999999764
No 257
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.61 E-value=6.2e-05 Score=82.48 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=36.4
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
+..+|+|||+|++||+||+.|++.|++|+++|+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 4568999999999999999999999999999998877664
No 258
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.61 E-value=5.6e-05 Score=74.14 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=37.7
Q ss_pred CcccEEEECCChhHHHHHHHhhh----C--CCeEEEEecCCCCCCcccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSV----D--GLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~----~--G~~VlvlE~n~~~GG~~~s 45 (445)
+++||+|||+|.+||+||.+|.+ + -.+|+|+||...+||.+-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 46999999999999999998853 2 3699999999999998765
No 259
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.55 E-value=0.00059 Score=68.81 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=49.2
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p 289 (445)
.++|..| ...+.++|.+.+.. |++++.+++|++|..+ +++ +.|+ .+|.+++||+||.+.+.+.
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 3466666 35788999888888 9999999999999874 554 4455 4666789999999988774
No 260
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=7.8e-05 Score=80.69 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+...|.|||+|.+||+||..|-|+||.|+|+||.+++||...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 346899999999999999999999999999999999999875
No 261
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.54 E-value=8.8e-05 Score=76.64 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.. ..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+++..|.
T Consensus 211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFTEIA-KKKWDIRLGRNVTAVEQD-GDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHHH-hcCCEEEeCCEEEEEEEc-CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 4555555443 458899999999999864 4433322346778999999999887664
No 262
>PRK13984 putative oxidoreductase; Provisional
Probab=97.53 E-value=9.7e-05 Score=79.20 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+..+|+|||+|.+|+++|..|++.|++|+++|+++++||..+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 356899999999999999999999999999999999999764
No 263
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=9.8e-05 Score=76.26 Aligned_cols=39 Identities=26% Similarity=0.578 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s 45 (445)
+||+||||+|.+|..||.. ..|++|+++|+ +.+||.|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 4999999999999988866 46999999998 468997744
No 264
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.51 E-value=8.5e-05 Score=77.94 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad~VI~~~~ 286 (445)
..+.++|.+.+... |++++.+++|++|.. ++++++|+.. +++ ++.|+.||++.+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATG 194 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATG 194 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence 46888898887765 889999999999987 4788888763 333 689999998754
No 265
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.51 E-value=0.00011 Score=77.30 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
|||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998654444
No 266
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.49 E-value=8.8e-05 Score=79.25 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=33.8
Q ss_pred EEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
|||||+|++||+||..++++|.+|+|+||++.+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~ 37 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAH 37 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCcc
Confidence 7999999999999999999999999999999776543
No 267
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.48 E-value=9.7e-05 Score=77.97 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~ 38 (445)
|+||||+|.+|+++|.+||++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 69999999864
No 268
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.48 E-value=0.00012 Score=75.87 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
.++.+.+.+.++..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+.+..|.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 356677777788899999999999999764 3444323357888999999998776654
No 269
>PLN02785 Protein HOTHEAD
Probab=97.45 E-value=0.00012 Score=77.67 Aligned_cols=35 Identities=37% Similarity=0.641 Sum_probs=32.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..||+||||+|.+||++|.+|++ +.+|++||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999999 699999999864
No 270
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.45 E-value=0.00014 Score=77.56 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHhh----hCCCeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVLS----VDGLKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~n~~~ 39 (445)
||+|||+|.+||.||..++ ++|.+|+++||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999999873
No 271
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.43 E-value=0.00013 Score=80.21 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~ 39 (445)
+|+|||||++||++|..|++. |++|+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 699999999999999999998 8999999999873
No 272
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.41 E-value=0.00016 Score=80.85 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
++||+|||+|.+||.||..++++|.+|+++||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999985
No 273
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.40 E-value=0.00017 Score=70.28 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=39.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
+|||+|||+|++|-.||...++.|.+...+|++..+||.|-
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 69999999999999999999999999999999999999874
No 274
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.36 E-value=0.0014 Score=63.78 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s 45 (445)
..+-|||+|++||++|..|-|. |.++.++|--+..||..-.
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 4689999999999999999875 6799999999999997654
No 275
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.30 E-value=0.00024 Score=68.15 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHhh----hCCCeEEEEecCCCCCCcccccchhh
Q 036458 3 EDYDVIVLGTGLKECILSGVLS----VDGLKVLHMDRNAYYGGESTSLNLTQ 50 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~n~~~GG~~~s~~~~~ 50 (445)
..+||+|||+|..|++.|+-|. +.|.+|+|+|+++.|--...-++..+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGG 136 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGG 136 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecc
Confidence 4689999999999999999886 34799999999998754444444443
No 276
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.21 E-value=0.00032 Score=70.73 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
||+|||+|++||++|..|++. ++|+|+=|++.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999999 999999998776
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.00028 Score=71.87 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
|.+.|||||||||.+|+-||.+.||.|.+++++=-|
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 556799999999999999999999999999998554
No 278
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.10 E-value=0.00056 Score=65.22 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=36.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
-|||||+|++||+|+..+-..|-.|+++|++...||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 499999999999999999999988999999999999864
No 279
>PRK09897 hypothetical protein; Provisional
Probab=96.96 E-value=0.00088 Score=70.21 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCC-Ccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYG-GES 43 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~G-G~~ 43 (445)
++|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a 43 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP 43 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence 47999999999999999998765 4899999999999 653
No 280
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.84 E-value=0.0012 Score=68.83 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCC
Q 036458 2 DEDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYY 39 (445)
Q Consensus 2 ~~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~ 39 (445)
+.+||.||||||-+||++|++||+. ..+||+||+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3579999999999999999999988 4799999998666
No 281
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.82 E-value=0.0014 Score=66.63 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.++..|.++++++.|++|.. ++.+.....+|+++.||.||.+.+..|.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 4555667777889999999999999864 3333323357889999999999887764
No 282
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.73 E-value=0.0011 Score=63.06 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~ 43 (445)
+.||.||||+|+.||+.|..|+-+ +.+|.|||+....+=..
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq 89 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ 89 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence 469999999999999999999977 99999999997665433
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.71 E-value=0.0017 Score=65.69 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=38.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.+|+|||+|..||.+|..|++.|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999885
No 284
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.58 E-value=0.0024 Score=65.45 Aligned_cols=52 Identities=21% Similarity=0.080 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
++.+.+.+.++..|.+++++++|++|.. + .+ +..+|+++.+|.||++++..|
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-~v--~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K-EV--VLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C-EE--EECCCCEEEccEEEEccCCCC
Confidence 4667777788999999999999999853 2 22 245788999999999987654
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.52 E-value=0.00099 Score=59.87 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~~ 44 (445)
+-||||+|+|-+||+||+..+++ ..+|.++|..-.+||-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 45999999999999999999955 589999999999998653
No 286
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0024 Score=64.07 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=30.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
+.|||||||||.+|+-||++.||-|-+.+++-.|
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 5799999999999999999999999988887654
No 287
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.47 E-value=0.0031 Score=64.88 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.++..|.++++++.|++|.. .. .+..+|+++.+|.||.+.+..|.
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~--v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING---NE--VTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE--EEECCCCEEEeCEEEECcCCCcC
Confidence 5667777888889999999999999842 22 12246778999999999887663
No 288
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.47 E-value=0.0083 Score=59.01 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=53.2
Q ss_pred EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458 225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP 289 (445)
Q Consensus 225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p 289 (445)
++|..| ...+.+++.+.+...|++++.+++|++|.. +++++.+|.++++++.||.||.+.+.+.
T Consensus 127 ~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 127 FYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSGDVQADQVVLAAGAWA 193 (337)
T ss_pred EcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCCEEECCEEEEcCChhh
Confidence 456666 567889999999999999999999999987 4666777877656899999999988764
No 289
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.003 Score=60.70 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDR 35 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 35 (445)
+||.||||+|-+||+||-..|..|++|.+||-
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 69999999999999999999999999999985
No 290
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.0037 Score=59.97 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
--|.|||+||+|+-||+.++++|.+|.++|-++.=+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 468999999999999999999999999999987655
No 291
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.19 E-value=0.0027 Score=59.79 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHHHhhhCC------CeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDG------LKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~n~~~GG~~~ 44 (445)
....++|+|+|+.|+.+|++|++.+ ..|+++|+....||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 4568999999999999999999998 89999999999988654
No 292
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.15 E-value=0.0056 Score=53.55 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.9
Q ss_pred EEECCChhHHHHHHHhhhC-----CCeEEEEecCCCCC-Ccc
Q 036458 8 IVLGTGLKECILSGVLSVD-----GLKVLHMDRNAYYG-GES 43 (445)
Q Consensus 8 iIIGaGl~Gl~aA~~La~~-----G~~VlvlE~n~~~G-G~~ 43 (445)
+|||+|++|++++..|.+. ..+|+|+|+++. | |..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~ 41 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGA 41 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-ccccc
Confidence 5999999999999999987 469999999766 5 433
No 293
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.99 E-value=0.0073 Score=54.19 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|..|...|..++++|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999754
No 294
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.99 E-value=0.0072 Score=52.93 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||+|-.|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999986
No 295
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.99 E-value=0.0077 Score=59.57 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~ 38 (445)
.|||+|+|||+.|++.|+.|..+ -+||+++|..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 79999999999999999999855 479999999844
No 296
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.84 E-value=0.0094 Score=53.72 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||.|..||.+|..||++|++|+-+|.|..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999974
No 297
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.82 E-value=0.0098 Score=59.49 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.++..|.++++++.|++|.. + . .+..+|+++.+|.||.+++..|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-~--v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G-A--LILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C-e--EEeCCCCEEecCEEEEccCCChh
Confidence 4566777788899999999999998842 2 2 12347889999999999886653
No 298
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.013 Score=56.68 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
..||..|||+|-+|+++|.+.+..|-+|.++|..-.+||.|-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 469999999999999999999999999999999999999884
No 299
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.016 Score=56.83 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=37.4
Q ss_pred cccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCcccc
Q 036458 4 DYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGESTS 45 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~s 45 (445)
...|.|||+|++|.-+|..|-+ .+.+|.++|+.+.++|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 3579999999999999998877 47999999999999999864
No 300
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.65 E-value=0.013 Score=59.41 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999887653
No 301
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.33 E-value=0.022 Score=49.20 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|+|+|+|-.|+..|++|+++|++|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998874
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.31 E-value=0.023 Score=57.27 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~ 290 (445)
++.+.+.+.++..|.+++++++|++|..+ ++.. .+. .+|+++.||.||.+.+..|.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcCCcEEECCEEEECcCCCcc
Confidence 45566777788899999999999999763 3333 344 57889999999999887764
No 303
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.27 E-value=0.023 Score=57.20 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCe-EEEcCEEEECCCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGE-TAKCKKVVCDPSYLP 289 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~-~~~ad~VI~~~~~~p 289 (445)
++.+...+.++.+|++++++++|++|.. ++ |+ .+|+ ++.|+.+|++++.-+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcC
Confidence 4556666788999999999999999854 33 33 3555 599999999988654
No 304
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.02 Score=56.08 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 305
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.024 Score=59.01 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4699999999999999999999999999998864
No 306
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.17 E-value=0.026 Score=56.86 Aligned_cols=37 Identities=30% Similarity=0.246 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence 4799999999999999999999999999999988654
No 307
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.10 E-value=0.029 Score=57.68 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 46999999999999999999999999999999887544
No 308
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.025 Score=58.57 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
.|.|||.|.+|+++|..|.++|++|++.|++....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~ 36 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE 36 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 48999999999999999999999999999988753
No 309
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.02 E-value=0.017 Score=57.30 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=27.9
Q ss_pred CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY 39 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~ 39 (445)
+.||+|+||.|+++|++|++|...+ .+++.||+++..
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3589999999999999999999887 999999998753
No 310
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.02 E-value=0.027 Score=58.51 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999987643
No 311
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.014 Score=56.41 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
..|||+|||+|++|-+||.+.||+|.+.=++ .++.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 3599999999999999999999999988775 46788865
No 312
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.036 Score=54.36 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..|.|||+|.-|+..|.+|+++|++|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999999999999999865
No 313
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.033 Score=53.99 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=33.0
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|..-..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4444579999999999999999999999999999874
No 314
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.033 Score=53.89 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
..|.|||+|.-|...|..|+++|++|+++|+++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 36999999999999999999999999999998654
No 315
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.81 E-value=0.034 Score=57.53 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4799999999999999999999999999999988653
No 316
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.035 Score=53.75 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 317
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=0.044 Score=55.67 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCC---CeEEEEecCCCCCCccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDG---LKVLHMDRNAYYGGEST 44 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~n~~~GG~~~ 44 (445)
++|+|||+|.+|+..|..|.+.- -++.++|+.+..|+-.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 68999999999999999998662 23999999999997654
No 318
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.64 E-value=0.044 Score=60.94 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~ 290 (445)
+..+.+.+.++..|.++++++.|++|..+.++....+. .+|+++.+|.||.+++..|.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 34456667788899999999999999753223344454 58889999999999887764
No 319
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.63 E-value=0.044 Score=53.64 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|+.-..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 6666679999999999999999999999999999875
No 320
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.60 E-value=0.04 Score=57.09 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 4799999999999999999999999999999987654
No 321
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.58 E-value=0.035 Score=53.70 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999999864
No 322
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.58 E-value=0.047 Score=53.55 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|.|||+|.-|...|..++++|++|+++|.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999999863
No 323
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.58 E-value=0.041 Score=56.82 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|..|+-+|..|++.|++|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4699999999999999999999999999999988753
No 324
>PRK06370 mercuric reductase; Validated
Probab=94.55 E-value=0.047 Score=56.60 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999987654
No 325
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.056 Score=49.33 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEec---CCC-CCCcccccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDR---NAY-YGGESTSLN 47 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~---n~~-~GG~~~s~~ 47 (445)
-.|+|||+|+++-+||.+++|+-.|.+++|- |+. +||...|-+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 4799999999999999999999999999994 444 588776654
No 326
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.45 E-value=0.045 Score=56.36 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+++|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4799999999999999999999999999999988754
No 327
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.43 E-value=0.049 Score=56.53 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 4699999999999999999999999999999887644
No 328
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.40 E-value=0.21 Score=50.12 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=48.0
Q ss_pred CceEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCeEEEcCEEEECCC
Q 036458 222 SPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGETAKCKKVVCDPS 286 (445)
Q Consensus 222 s~~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~~~~ad~VI~~~~ 286 (445)
...+||.-. ..++.++|.+.++..|++++++++|++| . +++ ..+.+ ++++++||.||.+.+
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECCCceEEecCEEEEcCC
Confidence 345799766 8899999999999999999999999999 2 233 34553 345799999998754
No 329
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.38 E-value=0.052 Score=56.20 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999987643
No 330
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.36 E-value=0.049 Score=56.61 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987543
No 331
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.35 E-value=0.051 Score=56.28 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 4699999999999999999999999999999988754
No 332
>PRK07846 mycothione reductase; Reviewed
Probab=94.35 E-value=0.053 Score=56.06 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 479999999999999999999999999999998765
No 333
>PRK04148 hypothetical protein; Provisional
Probab=94.32 E-value=0.046 Score=46.22 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 459999999 999889999999999999999987
No 334
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.28 E-value=0.057 Score=55.87 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999998765
No 335
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.27 E-value=0.054 Score=56.21 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 3799999999999999999999999999999887643
No 336
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.25 E-value=0.053 Score=55.39 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|.. ..|.|||.|..|+..|..|+++|++|+.+|++..
T Consensus 1 m~~-~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSF-ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCc-cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 553 5799999999999999999999999999998764
No 337
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.13 E-value=0.067 Score=55.37 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4699999999999999999999999999999987754
No 338
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.11 E-value=0.06 Score=55.16 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998763
No 339
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.01 E-value=0.069 Score=51.85 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|..--.|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5555579999999999999999999999999999876
No 340
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.061 Score=50.06 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
+++|||+|--|...|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 589999999999999999999999999999854
No 341
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.93 E-value=0.07 Score=54.87 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=34.0
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
.++|||+|..|+-.|..+++-|.+|+++|+++++--
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999999755
No 342
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.89 E-value=0.061 Score=49.08 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=34.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|.....|.|||+|+-|+-.|-..+.+|+.|.++|+|.-
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 44567899999999999999999999999999999864
No 343
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.063 Score=52.01 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999999864
No 344
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.85 E-value=0.07 Score=51.79 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.|.|||+|--|+..|..|+++|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.81 E-value=0.079 Score=54.78 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988753
No 346
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.81 E-value=0.083 Score=54.97 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 4799999999999999999999999999999988754
No 347
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.79 E-value=0.064 Score=59.37 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458 234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~ 290 (445)
+.+.+.+.++..|.++++++.|++|.. +++..+|. .+|+++.+|.||.+++..|.
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 345566677889999999999999864 34455565 57889999999999887763
No 348
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.74 E-value=0.19 Score=52.92 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=51.4
Q ss_pred eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCcc
Q 036458 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPDK 291 (445)
Q Consensus 224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~~ 291 (445)
+.|| .| ...+..++++.+..+|++++.+++|++|.. +++++++|+. +| .+++|+.||.+++.|...
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 3466 45 346788899999999999999999999988 4677766653 34 378999999999888543
No 349
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.086 Score=54.39 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
...|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999986
No 350
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.63 E-value=0.099 Score=51.58 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|.....|.|||+|--|...|..|+++|++|++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4555679999999999999999999999999999964
No 351
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.57 E-value=0.083 Score=55.60 Aligned_cols=36 Identities=19% Similarity=-0.001 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 479999999999999999999999999999988774
No 352
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.52 E-value=0.1 Score=54.14 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
-.++|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 36999999999999999999999999999999887654
No 353
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.51 E-value=0.082 Score=52.44 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
++.|||+|..||+.|..||+.||+|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999999874
No 354
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.47 E-value=0.066 Score=51.24 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecC--------CCCCCcccccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN--------AYYGGESTSLN 47 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n--------~~~GG~~~s~~ 47 (445)
-+|+|||+|..|.-+|....--|-+|+++|.| +.+||+..++.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 47999999999999999999999999999999 67888876654
No 355
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.42 E-value=0.1 Score=51.05 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.+|.|||+|--|...|++|+++|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 356
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.41 E-value=0.085 Score=58.42 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 4699999999999999999999999999999887643
No 357
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.38 E-value=0.094 Score=50.54 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999997754
No 358
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.37 E-value=0.09 Score=51.12 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDR 35 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 35 (445)
+|.|||+|--|+..|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999988
No 359
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.35 E-value=0.1 Score=53.72 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-+|..|++.|++|+++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4799999999999999999999999999999887543
No 360
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.30 E-value=0.11 Score=56.17 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 3699999999999999999999999999999998765
No 361
>PTZ00058 glutathione reductase; Provisional
Probab=93.27 E-value=0.11 Score=55.16 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
.-+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 35799999999999999999999999999999987653
No 362
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.27 E-value=0.14 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.9
Q ss_pred cccEEEECCCh-hHHHHHHHhhhCCCeEEEEecC
Q 036458 4 DYDVIVLGTGL-KECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~n 36 (445)
...|+|||+|- .|..+|.+|.+.|.+|+++.|+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999995 7999999999999999999986
No 363
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.24 E-value=0.1 Score=51.70 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||+|.-|+..|..|+++|++|++++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 59999999999999999999999999999864
No 364
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.23 E-value=0.11 Score=53.63 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-.++|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 369999999999999999999999999999988764
No 365
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.15 E-value=0.12 Score=50.58 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~ 38 (445)
+|.|||+|..|+++|+.|++.| ..|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 5999999999999999999999 58999999753
No 366
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.08 E-value=0.098 Score=53.39 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999764
No 367
>PLN02507 glutathione reductase
Probab=93.03 E-value=0.12 Score=54.17 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-+|+|||+|..|+-+|..|++.|.+|+++++.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 369999999999999999999999999999988753
No 368
>PRK10262 thioredoxin reductase; Provisional
Probab=93.02 E-value=0.13 Score=50.52 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-.|+|||+|..|+-+|..|++.|++|+++++.+...
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~ 182 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR 182 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC
Confidence 479999999999999999999999999999988763
No 369
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.93 E-value=0.11 Score=57.72 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.++|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 3689999999999999999999999999999987543
No 370
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.92 E-value=0.15 Score=52.49 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3699999999999999999999999999999887654
No 371
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.89 E-value=0.12 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998865
No 372
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.79 E-value=0.17 Score=44.77 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
...|+|+|+|..|..||..|...|.+|+++|.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3579999999999999999999999999999863
No 373
>PRK06116 glutathione reductase; Validated
Probab=92.75 E-value=0.14 Score=52.81 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 479999999999999999999999999999988764
No 374
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.70 E-value=0.16 Score=49.74 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45799999999999999999999999999999753
No 375
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.68 E-value=0.13 Score=54.58 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
-+|+|||+|..|+-+|..|++.|++|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 46999999999999999999999999999998865
No 376
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.61 E-value=0.14 Score=53.92 Aligned_cols=36 Identities=17% Similarity=-0.031 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG 40 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G 40 (445)
-+|+|||||.+|+-+|..|+..|++|+++++.+.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~ 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc
Confidence 479999999999999999999999999999988763
No 377
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.52 E-value=0.15 Score=53.25 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
-..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3469999999999999999999999999999874
No 378
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.45 E-value=0.16 Score=49.79 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||+|.-|+..|..|+++|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999974
No 379
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.40 E-value=0.18 Score=49.22 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~ 38 (445)
.|.|||+|.-|+..|+.|+..|+ +|+++|.++.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 69999999999999999999887 8999998543
No 380
>PLN02546 glutathione reductase
Probab=92.33 E-value=0.18 Score=53.56 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999887654
No 381
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.32 E-value=0.16 Score=50.51 Aligned_cols=39 Identities=31% Similarity=0.458 Sum_probs=35.6
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~ 39 (445)
|.+.+|+|.||-|+.-|++|++|+..+ ++++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 678899999999999999999999876 889999999864
No 382
>PRK13748 putative mercuric reductase; Provisional
Probab=92.26 E-value=0.18 Score=53.64 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
-.++|||+|..|+-+|..|++.|++|++++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 469999999999999999999999999999864
No 383
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.23 E-value=0.16 Score=48.84 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.|.|||.|+-|...|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999874
No 384
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=92.20 E-value=0.37 Score=49.48 Aligned_cols=42 Identities=31% Similarity=0.584 Sum_probs=38.7
Q ss_pred CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
|. ++|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 65 4699999999999999999999999999999999988764
No 385
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.16 E-value=0.21 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|..|...|..|.++|++|.++|++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 58999999999999999999999999999874
No 386
>PRK14694 putative mercuric reductase; Provisional
Probab=92.13 E-value=0.2 Score=52.01 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
-.++|||+|..|+-+|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999753
No 387
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.97 E-value=0.17 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~ 38 (445)
-.|+|||+|..|+-+|..|++.|.+ |+++++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999987 999998765
No 388
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.95 E-value=0.2 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
.+|+|||+|.+|+-+|..|++.|++|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999998755
No 389
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.71 E-value=0.22 Score=49.12 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 390
>PRK12831 putative oxidoreductase; Provisional
Probab=91.70 E-value=0.24 Score=51.43 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
-+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 391
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.62 E-value=0.26 Score=44.91 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n 36 (445)
...|+|||+|--|+.+|..|++.|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999998 69999877
No 392
>PRK14727 putative mercuric reductase; Provisional
Probab=91.62 E-value=0.25 Score=51.45 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
-.|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 469999999999999999999999999999753
No 393
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.54 E-value=0.2 Score=52.49 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998854
No 394
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=91.50 E-value=0.54 Score=50.74 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES 43 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~ 43 (445)
++|||||||||+.|+++|+.|+++|++|+++|+++.-+|.+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS 110 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence 46999999999999999999999999999999998766643
No 395
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.47 E-value=0.32 Score=41.27 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCe-EEEEecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLK-VLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n 36 (445)
...|+|||+|=+|-+++.+|+..|.+ |+++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999976 9999887
No 396
>PRK07121 hypothetical protein; Validated
Probab=91.43 E-value=0.7 Score=48.33 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST 44 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~ 44 (445)
.++||||||+|++||+||..++++|.+|+||||++..||..+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 397
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.42 E-value=0.19 Score=50.73 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|.-|+..|..|+. |++|+.+|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48999999999999988885 999999998764
No 398
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.37 E-value=0.25 Score=49.53 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCC-CeEEEEecC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRN 36 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n 36 (445)
.+|+|||+|-.|.++|..||+.| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 36999999999999999999999 999999998
No 399
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.37 E-value=0.23 Score=51.49 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999876
No 400
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.32 E-value=0.23 Score=52.06 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
-+++|||+|..|+-+|..|++.|.+|++++++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999975
No 401
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.29 E-value=0.25 Score=51.54 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhh---hCCCeEEEEecCCCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLS---VDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~n~~~GG 41 (445)
-.|+|||+|..|+-+|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999997665 44999999999998753
No 402
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.28 E-value=0.23 Score=51.84 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999999999974
No 403
>PRK10015 oxidoreductase; Provisional
Probab=91.28 E-value=0.67 Score=47.56 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY 287 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~ 287 (445)
.+-+.|.+.++..|++++.+++|++|.. +++++.++.+++++++|+.||.+.+.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCc
Confidence 4455677778888999999999999987 46677777777788999999998664
No 404
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.17 E-value=0.37 Score=39.37 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|+|+|.|-.|..+|..|.+.|.+|+++|++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 799999999999999999988899999999643
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.16 E-value=0.27 Score=49.37 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..+|+|||+|..|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999874
No 406
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.09 E-value=0.27 Score=51.59 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
-.|.|||+|.-|...|..|+++|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999998865
No 407
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=91.08 E-value=0.51 Score=48.04 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG 41 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG 41 (445)
||||||+|++||+||..++++|.+|+|+||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 408
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.07 E-value=0.29 Score=45.26 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=29.3
Q ss_pred cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
++.||| +|.-|.+.|..|+++|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999998865
No 409
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.07 E-value=0.29 Score=47.80 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~ 38 (445)
.|+|||+|..|.++|+.|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 58999999754
No 410
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.99 E-value=0.82 Score=43.46 Aligned_cols=57 Identities=21% Similarity=0.089 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeC------------CeEEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE------------GETAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~------------g~~~~ad~VI~~~~~~ 288 (445)
.++.+.|.+.+...|+++++++.|+++..++++++.++..+ ..+++|+.||.+.+..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 57888898888889999999999999987544477776531 2579999999887644
No 411
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=90.99 E-value=0.8 Score=47.02 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=36.4
Q ss_pred cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcc
Q 036458 6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGES 43 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~ 43 (445)
||||||+|++||+||..++++| .+|+||||++..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 412
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.96 E-value=0.36 Score=47.45 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~ 39 (445)
|-....|+|||+|-.|..+|..|+..|. +|.++|.++..
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3445689999999999999999999996 99999998764
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.94 E-value=0.26 Score=51.16 Aligned_cols=34 Identities=12% Similarity=-0.164 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 414
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.90 E-value=0.28 Score=50.90 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~ 38 (445)
.|.|||+|..|+.+|..||++ |++|+.+|.+..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 599999999999999999998 488999997653
No 415
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.84 E-value=0.24 Score=54.29 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|..|...|..++++|++|+++|.++.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999998843
No 416
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=90.75 E-value=0.76 Score=43.88 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEE-EEeCCeEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIG-VTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~-v~~~g~~~~ad~VI~~~~~~ 288 (445)
++-+.|.+.++..|++++++++|+++..+ ++.+.. ++.++++++||.||.+.+..
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 56677888888889999999999999874 444332 23455789999999987654
No 417
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.69 E-value=0.38 Score=45.89 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY 39 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~ 39 (445)
...|+|||.|-.|+.+|..|++.| .+++++|....-
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 467999999999999999999999 799999977543
No 418
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=90.69 E-value=1.3 Score=44.39 Aligned_cols=111 Identities=22% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHH
Q 036458 164 KVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSA 243 (445)
Q Consensus 164 ~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~ 243 (445)
+.|..|++++.|+++..++-+..+.... .|-++.-..+|.. +-|++. .....+-.+||...|++.|.+.
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRv---NYgQ~~~i~a~~G----~vSla~--a~~gl~sV~GGN~qI~~~ll~~-- 137 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRV---NYGQNVNIHAFAG----LVSLAG--ATGGLWSVEGGNWQIFEGLLEA-- 137 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEe---ecccccchhhhhh----heeeee--ccCCceEecCCHHHHHHHHHHH--
Confidence 3677888888899887775443332211 1222111222211 112221 1233466799999999988764
Q ss_pred HcCcEEEeCCcceeE-EEcCCCc-EEEEE--e-CC-eEEEcCEEEECCCC
Q 036458 244 VYGGTYMLNKPECKV-EFDGDGK-VIGVT--S-EG-ETAKCKKVVCDPSY 287 (445)
Q Consensus 244 ~~Gg~i~l~~~V~~I-~~~~~g~-~~~v~--~-~g-~~~~ad~VI~~~~~ 287 (445)
-|+++ ++++|++| ....++. ...|. . .+ ..-..|.||.+.+.
T Consensus 138 -S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 138 -SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred -ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 57889 99999999 3323333 22232 2 22 23346999998765
No 419
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.66 E-value=0.26 Score=47.67 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 47899999999999999999999999999885
No 420
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.31 E-value=0.32 Score=47.27 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
..|.|||+|.-|...|..++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46999999999999999999988999999999
No 421
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.30 E-value=0.28 Score=53.62 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.|.|||+|..|...|..++++|++|+++|.+.-
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 589999999999999999999999999999853
No 422
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.21 E-value=0.36 Score=49.99 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~ 38 (445)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999997 9999998764
No 423
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.15 E-value=0.32 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.097 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHH-HHHHhhhCCCeEEEEecCCCC
Q 036458 3 EDYDVIVLGTGLKECI-LSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~n~~~ 39 (445)
+...|.|||.|-+|++ +|.+|.+.|++|++.|.+...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~ 43 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA 43 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh
Confidence 3346999999999999 699999999999999988753
No 424
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.03 E-value=0.47 Score=43.34 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
...|+|||||=.|...|..|.++|.+|+|++++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457999999999999999999999999999764
No 425
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.98 E-value=0.5 Score=41.29 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=28.8
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEe
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMD 34 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE 34 (445)
...|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4579999999999999999999999999995
No 426
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.97 E-value=0.39 Score=49.18 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHhhh--------------CCCeEEEEecCCCCCCc
Q 036458 6 DVIVLGTGLKECILSGVLSV--------------DGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~--------------~G~~VlvlE~n~~~GG~ 42 (445)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~ 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence 79999999999999999985 58999999999877543
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.97 E-value=0.32 Score=47.56 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.+.|+|+|--|+..|+.|+++|.+|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 589999999999999999999999998877765
No 428
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.92 E-value=0.37 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458 7 VIVLGTGLKECILSGVLSVDGL-KVLHMDRNA 37 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~ 37 (445)
|.|||+|..|..+|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999985
No 429
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.87 E-value=0.41 Score=48.15 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=30.7
Q ss_pred ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..|.||| +|+-|...|..|.++|+.|.++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 4699999 89999999999999999999999875
No 430
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.84 E-value=0.5 Score=43.28 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|+|||+|-.|...+..|.+.|.+|+|++.+..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4799999999999999999999999999987643
No 431
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.68 E-value=0.66 Score=41.80 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~ 288 (445)
.++.+-+.+.++.+|..++++++|++|..+ +++ ..|+. +++++.|++||.+.+..
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeecc
Confidence 345566666777888889999999999996 444 44554 56789999999987753
No 432
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.62 E-value=0.4 Score=49.01 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
...|.|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 357999999999999999999999999999988776
No 433
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.58 E-value=0.38 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
-.|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 369999999999999999999999999999763
No 434
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.57 E-value=0.48 Score=46.26 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~ 38 (445)
.+|.|||+|..|...|..|+..|. .|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999654
No 435
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.55 E-value=0.4 Score=46.62 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999874
No 436
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.51 E-value=0.39 Score=38.65 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
...|+|||+|-.+..-+..|.+.|-+|+|+....
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4679999999999999999999999999998885
No 437
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.49 E-value=0.55 Score=48.38 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
..++|+|.|-+|+++|.+|++.|++|++.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987764
No 438
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=89.35 E-value=1.1 Score=48.07 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcC-EEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCK-KVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad-~VI~~~~~~ 288 (445)
..+...|.+.++..|++|+++++|++|..+++|+++||.. +|+ ++.|+ .||++.+-+
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf 274 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGF 274 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcc
Confidence 4577777778888899999999999999866789999863 443 47787 488765544
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.07 E-value=0.37 Score=52.86 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3599999999999999999999999999998853
No 440
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=88.96 E-value=0.37 Score=46.48 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE--eC-C--eEEEcCEEEECCCC
Q 036458 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT--SE-G--ETAKCKKVVCDPSY 287 (445)
Q Consensus 228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~--~~-g--~~~~ad~VI~~~~~ 287 (445)
..|....+++|.+.++....++.+.....++..+ +.+++ .. .+ | +++..+.+-.+|+-
T Consensus 232 iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~-~~~Av-Fe~L~kPG~t~ei~yslLHv~Ppm 294 (446)
T KOG3851|consen 232 IFGVKHYADALEKVIQERNITVNYKRNLIEVRTN-DRKAV-FENLDKPGVTEEIEYSLLHVTPPM 294 (446)
T ss_pred eecHHHHHHHHHHHHHhcceEeeeccceEEEecc-chhhH-HHhcCCCCceeEEeeeeeeccCCC
Confidence 3577788899999999999999999999988763 33321 11 12 4 45667766666654
No 441
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.96 E-value=0.46 Score=48.91 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|+|+|+|-.|+++|..|+++|++|++.|++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 3589999999999999999999999999998753
No 442
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.91 E-value=0.5 Score=48.29 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.5
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|.. -.|.|||-|.+|.++|.+|.+.|++|...|++..
T Consensus 1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 444 3699999999999999999999999999998754
No 443
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.61 E-value=0.58 Score=48.27 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
|.+.--|+|||-|-+|.++|..|.+.|++|++.|.++.
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45555699999999999999999999999999998763
No 444
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.58 E-value=0.54 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|.-|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999875
No 445
>PRK06849 hypothetical protein; Provisional
Probab=88.57 E-value=0.67 Score=46.84 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCcccEEEECCCh-hHHHHHHHhhhCCCeEEEEecCCCC
Q 036458 1 MDEDYDVIVLGTGL-KECILSGVLSVDGLKVLHMDRNAYY 39 (445)
Q Consensus 1 m~~~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~n~~~ 39 (445)
|++...|+|+|++. .|+..|..|.++|++|.++|.+...
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 77788999999998 6999999999999999999998643
No 446
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.55 E-value=0.47 Score=51.86 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHhh-hCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLS-VDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~n~~ 38 (445)
.|.|||+|..|...|..++ ++|++|+++|.++.
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 5999999999999999998 69999999999853
No 447
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=88.48 E-value=1.7 Score=46.30 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
.|.++|.+.+...|++++.+++|+++..+ +|+++|+.. +|+ .+.|+.||++.+
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 68889988888889999999999999984 889999863 453 578999998754
No 448
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.44 E-value=0.66 Score=42.28 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..++|+|.|--|..+|..|.+.|.+|++.|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999999873
No 449
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.37 E-value=1.6 Score=44.05 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~ 38 (445)
.|||+|||||++||++|..|+++| .+|+|+||++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999996 99999999974
No 450
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.35 E-value=0.52 Score=49.15 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.-.|+|+|+|..||.|+..+...|-+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999875
No 451
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.30 E-value=0.52 Score=52.04 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~ 38 (445)
-.|+|||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998765
No 452
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.28 E-value=0.51 Score=48.90 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
.+|.|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999754
No 453
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.26 E-value=0.62 Score=39.67 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
++|+|+|.-+..+|..++.-|++|+++|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998843
No 454
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.25 E-value=0.62 Score=44.99 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~ 37 (445)
..|+|||+|-+|.++|+.|++.|. +|++++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999996 899999974
No 455
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.16 E-value=0.72 Score=45.73 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n 36 (445)
...|+|||+|--|+.+|..|+++|. +++++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3579999999999999999999998 99999984
No 456
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.16 E-value=0.49 Score=51.77 Aligned_cols=33 Identities=36% Similarity=0.283 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHhh-hCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLS-VDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~n~ 37 (445)
..|.|||+|..|...|..++ ++|++|+++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 35999999999999999999 9999999999875
No 457
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=88.10 E-value=0.29 Score=46.71 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=25.2
Q ss_pred cccEEEECCChhHHHHHHHhhhCC-------CeEEEEe
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDG-------LKVLHMD 34 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE 34 (445)
..+++|||+|+.||+.|..+++.+ .+|++++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 468999999999999998888755 3566664
No 458
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.07 E-value=0.75 Score=44.71 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
...|+|||.|-.|..+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999985
No 459
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.01 E-value=0.97 Score=34.95 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHhhhC-CCeEEEEec
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD-GLKVLHMDR 35 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~ 35 (445)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 689999988
No 460
>PRK12839 hypothetical protein; Provisional
Probab=87.98 E-value=1.7 Score=46.35 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe-EE-EcCEEEECCCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE-TA-KCKKVVCDPSYLP 289 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~-~~-~ad~VI~~~~~~p 289 (445)
..|.+.|.+.+...|++|+++++|++|..+++|+++||.. +|+ ++ .++.||++.+-+.
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 4678888888888999999999999998755788999863 343 34 4578888776553
No 461
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.97 E-value=0.6 Score=48.58 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..|.|+|.|-+|+++|..|.+.|.+|++.|++.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 359999999999999999999999999999764
No 462
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.84 E-value=0.85 Score=39.29 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~ 37 (445)
..++|+|+|..|...|..|++.| ++|.+++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 46999999999999999999996 8999999874
No 463
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.63 E-value=0.66 Score=47.97 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..|+|+|.|.+|.++|..|.+ |.+|++.|.+.
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 469999999999999999995 99999999653
No 464
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.61 E-value=0.71 Score=46.92 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
-.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4699999999999999999999999999998753
No 465
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.59 E-value=0.77 Score=44.80 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~ 37 (445)
..|.|||+|..|.+.|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999994 899999875
No 466
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.58 E-value=0.71 Score=44.90 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999985
No 467
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.57 E-value=0.81 Score=38.67 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=29.3
Q ss_pred cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN 36 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n 36 (445)
+..|+|+|+|-.|+.+|..|++.|. +++++|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4579999999999999999999997 79999876
No 468
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=87.54 E-value=1.7 Score=45.63 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPD 290 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~ 290 (445)
..+..++++.+...|++++.+++|++|..+ ++. +++.. +| .+++|+.||.+.+.|..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 467778888888999999999999999873 443 34442 24 37899999999988754
No 469
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=87.52 E-value=1.6 Score=45.90 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EG--ETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g--~~~~ad~VI~~~~~~ 288 (445)
.+.+.|.+.++..|++++++++|++|.. +++++++|.. ++ .++.|+.||++.+-+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 5888898888999999999999999987 4788888763 32 368999999876533
No 470
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.32 E-value=0.83 Score=45.29 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~ 37 (445)
+..|+|||+|--|+.+|..|+++|. +++++|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999999999999999999997 899998863
No 471
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.28 E-value=0.89 Score=40.46 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRN 36 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n 36 (445)
.|+|||+|-.|+..|..|++.|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999997 59999986
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.20 E-value=0.94 Score=40.88 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=29.2
Q ss_pred ccEEEECC-ChhHHHHHHHhhhCCCeEEEEecC
Q 036458 5 YDVIVLGT-GLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
..++|+|+ |-.|..+|..|++.|++|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999995 999999999999999999999876
No 473
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.20 E-value=0.8 Score=44.28 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
..|+|||+|-.|..+|..|...|.+|++++|+..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4699999999999999999999999999999753
No 474
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.15 E-value=0.68 Score=48.51 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..|.|+|.|.+|+++|.+|.+.|++|...|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 369999999999999999999999999999875
No 475
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.05 E-value=0.92 Score=45.54 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCCcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 1 MDEDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
|.++..|+|.|+ |.-|..++..|.++|++|+.+++..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 345568999998 9999999999999999999999753
No 476
>PRK08401 L-aspartate oxidase; Provisional
Probab=87.04 E-value=2.2 Score=44.31 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+||+|||+|++||+||..++++|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999985
No 477
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.90 E-value=0.6 Score=44.88 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=36.4
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL 46 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~ 46 (445)
..|+|+|.|+-|-+.|..|.++|+.|.++.+....+...+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 469999999999999999999999999999998875554443
No 478
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.78 E-value=1 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAY 38 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~ 38 (445)
..+|.|||+|-.|.++|+.|+..|. .+.++|.|.-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4689999999999999999999997 8999998643
No 479
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.72 E-value=0.97 Score=43.25 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
..++|+|+|-.|.++|..|++.|.+|++++|+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999999999998863
No 480
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=86.68 E-value=2.7 Score=39.86 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC-cEEEEEeC------------CeEEEcCEEEECCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDG-KVIGVTSE------------GETAKCKKVVCDPSY 287 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g-~~~~v~~~------------g~~~~ad~VI~~~~~ 287 (445)
.++.+.|.+.+...|++++.++.|+++..++++ ++.||..+ ..+++|+.||.+.+.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 477888888888899999999999999885332 67787642 247899999987653
No 481
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.65 E-value=2 Score=46.09 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE 42 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~ 42 (445)
.++||||||+|++||.||..++++|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999998877764
No 482
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=86.61 E-value=2.2 Score=43.15 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL 288 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~ 288 (445)
.+-+.|++.+++.|++++.++.|+.+..++++.+.++..++.+++|+.||.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 45566788889999999999999999986455555555666889999999987643
No 483
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.61 E-value=1.2 Score=38.13 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=29.6
Q ss_pred cEEEECC-ChhHHHHHHHhhhCCC--eEEEEecCCC
Q 036458 6 DVIVLGT-GLKECILSGVLSVDGL--KVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGa-Gl~Gl~aA~~La~~G~--~VlvlE~n~~ 38 (445)
+|.|||+ |..|.++|..|...|. ++.++|.+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 6899999 9999999999998874 7999999954
No 484
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.51 E-value=0.74 Score=47.44 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
+|+|+|+|-.|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999999754
No 485
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.51 E-value=2.7 Score=42.40 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY 287 (445)
Q Consensus 233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~ 287 (445)
...+.+.+.++.....-..+.+|++|.. +++++++|.+ +|+.+.||.||.+.+.
T Consensus 96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTIIQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEEES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEEEEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4456666677776665557899999998 5899999985 7899999999988765
No 486
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=86.45 E-value=2.2 Score=42.75 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY 39 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~ 39 (445)
||+|||||++||++|..|+++| ++|+|+||.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999999764
No 487
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.28 E-value=1.1 Score=44.05 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458 4 DYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA 37 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~ 37 (445)
..+|.|||+|-.|.++|..|+..| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999999 6899999875
No 488
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.26 E-value=1 Score=35.27 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHhhhCC---CeEEEE-ecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDG---LKVLHM-DRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G---~~Vlvl-E~n~ 37 (445)
.+.|||+|--|.+.+..|.++| .+|++. ++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 3789999999999999999999 999966 8774
No 489
>PRK06175 L-aspartate oxidase; Provisional
Probab=86.24 E-value=2.3 Score=43.67 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEE--eCCe--EEEcCEEEECCCC
Q 036458 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVT--SEGE--TAKCKKVVCDPSY 287 (445)
Q Consensus 232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~--~~g~--~~~ad~VI~~~~~ 287 (445)
.++.+.|.+.++. .|++++++++|++|..+ ++++.+|. .+++ ++.|+.||.+.+-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3688888877765 48999999999999874 67788864 3444 5899999987653
No 490
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.95 E-value=1.3 Score=41.84 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=32.3
Q ss_pred CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458 3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY 38 (445)
Q Consensus 3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~ 38 (445)
....++|+|+|.-+..+|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999996654
No 491
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=85.92 E-value=2.4 Score=45.11 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcC-EEEECCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCK-KVVCDPSYL 288 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad-~VI~~~~~~ 288 (445)
..|.+.|.+.++..|++++++++|++|+.+ ++++++|.. +|+ .+.|+ .||++.+-+
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 467888888888999999999999999984 788999864 453 47785 577765443
No 492
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.89 E-value=1 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHhhhCCC---eEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGL---KVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~---~VlvlE~n~ 37 (445)
..|+|+|+|=+|..+|..|.+.|. ++.++||+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 479999999999999999999996 599999983
No 493
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.88 E-value=2.6 Score=44.20 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC----eEEEcCEEEECCCCCCcc
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG----ETAKCKKVVCDPSYLPDK 291 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g----~~~~ad~VI~~~~~~p~~ 291 (445)
..+..++...++..|++++.+++|++|..+ ++. ++|.. ++ .+++|+.||.+.+.|.+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 467777888888999999999999999874 443 44542 32 368999999999887543
No 494
>PRK08275 putative oxidoreductase; Provisional
Probab=85.81 E-value=2.7 Score=44.68 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCc
Q 036458 4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGE 42 (445)
Q Consensus 4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~ 42 (445)
++||||||+|++||.||..++++ |.+|+++||.+..+|.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g 49 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSG 49 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence 58999999999999999999987 7899999999985443
No 495
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.78 E-value=1 Score=43.83 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 58999999999999999999999999999874
No 496
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.76 E-value=0.82 Score=47.40 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~ 37 (445)
.+|+|||+|.+|+=.|..|++.+++|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 469999999999999999999999999999865
No 497
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.66 E-value=2.2 Score=45.48 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS 286 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~ 286 (445)
..|.++|.+.+...|.+++.++.++++..+++|+++|+.. +|+ .+.|+.||++.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 4688889888888899999999999999855789999863 453 578999998754
No 498
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=85.64 E-value=2.9 Score=44.71 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe-EEEcC-EEEECCCCCC
Q 036458 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE-TAKCK-KVVCDPSYLP 289 (445)
Q Consensus 232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~-~~~ad-~VI~~~~~~p 289 (445)
.+|.++|.+.++..|++++++++|+++..+ ++++++|.. +++ .+.++ .||++.+-++
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 578888988889999999999999999984 788888763 233 47785 6888776554
No 499
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=85.59 E-value=1.2 Score=43.17 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCC
Q 036458 5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNA 37 (445)
Q Consensus 5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~ 37 (445)
..|+|+|+|=+|.++|..|++.|.+ |+++.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999999999999999999986 99999874
No 500
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=85.57 E-value=1.2 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458 6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRN 36 (445)
Q Consensus 6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n 36 (445)
.+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 4899999999999999999999999997443
Done!