BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036461
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBP|B Chain B, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|B Chain B, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1IE7|B Chain B, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|1S3T|B Chain B, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|B Chain B, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 126
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 180 RVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 232
R EE+ V + +G VF S L NG NKE+ L E+ KG++
Sbjct: 76 RFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKEL--ILQRAKELGYKGVE 126
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG--VVCK- 57
+EA L+ + R G + + + YN L+ +C + ++ G F +V K
Sbjct: 43 LEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101
Query: 58 -PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEA 114
PN T+T + + A ++ +MK I P + +Y + GFC D ++A
Sbjct: 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|1UBP|B Chain B, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|B Chain B, Structure Of Native Urease From Bacillus Pasteurii
Length = 122
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 232
R EE+ V + +G VF S L NG NKE+ L E+ KG++
Sbjct: 71 ARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKEL--ILQRAKELGYKGVE 122
>pdb|3HSB|A Chain A, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3HSB|B Chain B, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3HSB|C Chain C, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3HSB|D Chain D, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3HSB|E Chain E, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3HSB|F Chain F, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
pdb|3AHU|A Chain A, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer.
pdb|3AHU|B Chain B, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer.
pdb|3AHU|C Chain C, Crystal Structure Of Ymah (Hfq) From Bacillus Subtilis In
Complex With An Rna Aptamer
Length = 78
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217
+ N +V L++GF L G+V + V +ES G + ++ ++I KN ++E
Sbjct: 21 KENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAISTFAPQKNVQLE 76
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 67 IDGLCKEGFVDKAKELFLKMKDE 89
ID L KEG +++A+EL+LK+ +E
Sbjct: 253 IDKLKKEGKIEEAQELYLKVNEE 275
>pdb|2DJ6|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DTT|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|D Chain D, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|E Chain E, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|F Chain F, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
Length = 115
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313
V T+ I+G KNGY+++ +EL + + + ELD R N + +
Sbjct: 26 VHGHTFFLEVAIEGEIKNGYVMDFLELRKIVEEITKELDHRNLNNIFE 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,736,913
Number of Sequences: 62578
Number of extensions: 443843
Number of successful extensions: 1361
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 17
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)