Query 036461
Match_columns 369
No_of_seqs 694 out of 1574
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 12:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.6E-61 2.1E-65 432.5 47.6 346 17-368 435-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-59 2.8E-64 425.2 47.6 363 1-369 454-841 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-54 2.2E-59 390.4 36.9 348 2-367 105-453 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.8E-54 1.9E-58 384.3 37.4 348 2-366 141-520 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.3E-53 4.9E-58 390.3 36.6 280 2-295 170-449 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 7.2E-53 1.6E-57 387.0 39.1 352 1-367 270-652 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.5E-28 1.8E-32 225.8 44.5 348 3-368 552-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-27 1.6E-31 219.5 44.9 349 2-368 517-865 (899)
9 PRK11788 tetratricopeptide rep 100.0 6E-25 1.3E-29 186.3 34.3 306 23-341 39-354 (389)
10 TIGR00990 3a0801s09 mitochondr 100.0 5.3E-23 1.2E-27 183.2 43.9 353 1-367 144-569 (615)
11 PRK11788 tetratricopeptide rep 99.9 8.6E-24 1.9E-28 179.3 35.6 301 61-368 36-346 (389)
12 PRK15174 Vi polysaccharide exp 99.9 9.3E-23 2E-27 181.1 40.7 332 21-368 44-380 (656)
13 PRK15174 Vi polysaccharide exp 99.9 2.5E-22 5.5E-27 178.4 41.8 319 1-334 59-381 (656)
14 PRK11447 cellulose synthase su 99.9 1.3E-21 2.7E-26 185.4 43.7 355 1-367 286-738 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 1.4E-22 3E-27 166.4 28.0 62 20-88 117-178 (966)
16 PRK10049 pgaA outer membrane p 99.9 2.2E-20 4.7E-25 169.6 43.6 355 1-368 32-455 (765)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-20 4.6E-25 166.6 42.6 334 21-367 129-535 (615)
18 KOG4626 O-linked N-acetylgluco 99.9 4.7E-22 1E-26 163.4 28.0 349 1-367 133-483 (966)
19 PRK11447 cellulose synthase su 99.9 1.3E-20 2.7E-25 178.6 41.3 316 1-334 368-740 (1157)
20 PRK10049 pgaA outer membrane p 99.9 2E-18 4.4E-23 156.8 41.5 350 4-368 2-421 (765)
21 PRK14574 hmsH outer membrane p 99.9 1.2E-17 2.6E-22 149.5 43.2 194 172-367 299-511 (822)
22 PRK09782 bacteriophage N4 rece 99.9 2.5E-16 5.5E-21 143.9 42.5 347 2-365 360-736 (987)
23 KOG2076 RNA polymerase III tra 99.8 2.3E-16 5E-21 135.5 36.7 356 1-367 156-553 (895)
24 PRK09782 bacteriophage N4 rece 99.8 8.5E-16 1.8E-20 140.5 40.9 321 31-368 354-705 (987)
25 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.4E-20 137.0 40.8 352 2-366 52-476 (822)
26 KOG4422 Uncharacterized conser 99.8 1.1E-15 2.4E-20 121.0 35.6 295 2-300 133-463 (625)
27 KOG4422 Uncharacterized conser 99.8 8.5E-16 1.8E-20 121.6 34.7 341 15-367 203-588 (625)
28 KOG2076 RNA polymerase III tra 99.8 6.1E-16 1.3E-20 133.0 35.0 335 21-366 141-509 (895)
29 PRK10747 putative protoheme IX 99.8 5.3E-16 1.2E-20 130.5 33.8 281 73-366 97-387 (398)
30 TIGR00540 hemY_coli hemY prote 99.8 5E-16 1.1E-20 131.4 33.7 290 71-366 95-396 (409)
31 PF13429 TPR_15: Tetratricopep 99.8 3.5E-19 7.7E-24 143.3 13.2 261 65-332 13-275 (280)
32 PRK10747 putative protoheme IX 99.8 1E-15 2.3E-20 128.8 33.9 283 32-333 97-389 (398)
33 PF13429 TPR_15: Tetratricopep 99.8 3.8E-19 8.1E-24 143.2 12.4 262 100-368 13-276 (280)
34 TIGR00540 hemY_coli hemY prote 99.8 1.1E-15 2.5E-20 129.3 33.5 298 23-332 86-397 (409)
35 KOG2003 TPR repeat-containing 99.8 7.5E-16 1.6E-20 123.1 26.8 350 2-367 255-687 (840)
36 KOG2002 TPR-containing nuclear 99.8 1.4E-15 3E-20 131.8 29.6 333 22-366 345-742 (1018)
37 KOG1155 Anaphase-promoting com 99.8 2.8E-14 6.1E-19 114.1 34.1 335 15-364 160-531 (559)
38 KOG2002 TPR-containing nuclear 99.8 7.3E-15 1.6E-19 127.4 32.6 284 60-347 452-758 (1018)
39 COG2956 Predicted N-acetylgluc 99.8 1.1E-14 2.4E-19 111.1 29.6 285 73-367 48-345 (389)
40 COG2956 Predicted N-acetylgluc 99.8 1.5E-14 3.2E-19 110.5 30.1 290 31-333 47-346 (389)
41 KOG1915 Cell cycle control pro 99.8 1.4E-13 2.9E-18 110.8 35.7 350 2-368 159-535 (677)
42 KOG1126 DNA-binding cell divis 99.8 1.5E-15 3.2E-20 126.6 25.5 289 33-338 333-624 (638)
43 KOG1126 DNA-binding cell divis 99.8 7.9E-16 1.7E-20 128.2 23.6 283 74-366 333-617 (638)
44 KOG0547 Translocase of outer m 99.8 3.4E-14 7.4E-19 114.4 30.9 221 140-366 336-563 (606)
45 COG3071 HemY Uncharacterized e 99.7 1E-13 2.2E-18 109.0 32.2 284 73-366 97-387 (400)
46 COG3071 HemY Uncharacterized e 99.7 9.8E-14 2.1E-18 109.2 31.5 293 25-333 88-389 (400)
47 KOG2003 TPR repeat-containing 99.7 6.8E-14 1.5E-18 112.1 30.5 346 1-355 293-709 (840)
48 KOG1155 Anaphase-promoting com 99.7 1.6E-13 3.5E-18 109.9 31.4 294 27-334 235-536 (559)
49 KOG1915 Cell cycle control pro 99.7 1.3E-12 2.8E-17 105.3 35.8 350 2-368 91-499 (677)
50 KOG0495 HAT repeat protein [RN 99.7 1.4E-12 3.1E-17 109.0 36.4 332 21-367 518-878 (913)
51 KOG0495 HAT repeat protein [RN 99.7 3.8E-12 8.3E-17 106.5 36.3 301 60-368 516-845 (913)
52 PRK12370 invasion protein regu 99.7 2.6E-13 5.6E-18 119.4 28.2 214 2-228 279-501 (553)
53 KOG1129 TPR repeat-containing 99.7 4.1E-14 8.8E-19 108.4 18.8 230 99-334 227-458 (478)
54 PRK12370 invasion protein regu 99.6 9.8E-13 2.1E-17 115.7 30.1 234 17-263 254-501 (553)
55 TIGR02521 type_IV_pilW type IV 99.6 5.3E-13 1.1E-17 105.1 25.6 199 165-367 31-230 (234)
56 TIGR02521 type_IV_pilW type IV 99.6 9.9E-13 2.2E-17 103.5 25.8 201 59-263 30-231 (234)
57 KOG1173 Anaphase-promoting com 99.6 3.9E-12 8.5E-17 104.6 27.9 286 16-315 241-532 (611)
58 KOG1173 Anaphase-promoting com 99.6 9.6E-12 2.1E-16 102.4 28.8 257 103-365 252-514 (611)
59 KOG1129 TPR repeat-containing 99.6 3.4E-13 7.4E-18 103.5 18.9 230 64-299 227-458 (478)
60 PF12569 NARP1: NMDA receptor- 99.6 4.6E-11 9.9E-16 102.0 31.8 296 63-367 7-332 (517)
61 KOG4318 Bicoid mRNA stability 99.6 1.9E-12 4.1E-17 111.8 23.0 254 5-285 11-286 (1088)
62 KOG0547 Translocase of outer m 99.6 1.4E-10 3.1E-15 94.0 30.6 333 21-368 117-531 (606)
63 PF12569 NARP1: NMDA receptor- 99.5 1.4E-10 3E-15 99.1 31.1 298 20-332 5-332 (517)
64 KOG1174 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 91.6 28.0 303 57-367 191-498 (564)
65 KOG1840 Kinesin light chain [C 99.5 2.8E-11 6.1E-16 102.1 24.8 241 92-332 196-477 (508)
66 KOG1156 N-terminal acetyltrans 99.5 2.1E-09 4.6E-14 90.4 34.7 170 16-194 72-248 (700)
67 KOG4162 Predicted calmodulin-b 99.5 9.9E-10 2.2E-14 94.1 33.0 349 7-366 311-780 (799)
68 PRK11189 lipoprotein NlpI; Pro 99.5 1.2E-10 2.7E-15 94.1 26.9 225 28-266 35-267 (296)
69 KOG2047 mRNA splicing factor [ 99.5 4.8E-09 1E-13 88.3 35.6 353 3-366 157-612 (835)
70 KOG1840 Kinesin light chain [C 99.5 9.3E-11 2E-15 99.0 25.7 239 129-367 198-477 (508)
71 KOG1174 Anaphase-promoting com 99.5 1.1E-09 2.3E-14 87.3 29.4 292 29-334 206-500 (564)
72 COG3063 PilF Tfp pilus assembl 99.5 2.6E-10 5.7E-15 83.6 23.8 197 63-263 38-235 (250)
73 KOG4340 Uncharacterized conser 99.5 2.3E-10 5E-15 87.2 24.0 296 19-332 10-337 (459)
74 PRK11189 lipoprotein NlpI; Pro 99.5 2.9E-10 6.4E-15 91.9 26.6 232 74-315 40-281 (296)
75 KOG3785 Uncharacterized conser 99.5 2.5E-09 5.4E-14 83.7 29.4 348 3-366 41-487 (557)
76 COG3063 PilF Tfp pilus assembl 99.5 2.7E-10 5.8E-15 83.6 22.7 199 132-334 37-236 (250)
77 cd05804 StaR_like StaR_like; a 99.4 3.2E-09 6.9E-14 89.2 33.1 305 59-367 5-334 (355)
78 KOG4318 Bicoid mRNA stability 99.4 1.6E-11 3.4E-16 106.3 18.9 253 41-320 12-286 (1088)
79 cd05804 StaR_like StaR_like; a 99.4 8E-09 1.7E-13 86.8 33.6 306 18-333 5-335 (355)
80 KOG1156 N-terminal acetyltrans 99.4 3.2E-08 6.9E-13 83.5 34.7 222 4-239 27-256 (700)
81 KOG2376 Signal recognition par 99.4 2.3E-08 5E-13 83.5 33.0 182 1-195 29-254 (652)
82 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.9E-17 73.4 6.2 49 58-106 1-49 (50)
83 KOG0624 dsRNA-activated protei 99.3 3.3E-08 7.2E-13 77.2 29.0 305 17-335 36-371 (504)
84 PF13041 PPR_2: PPR repeat fam 99.3 4.6E-12 1E-16 72.1 6.3 49 93-141 1-49 (50)
85 PF04733 Coatomer_E: Coatomer 99.3 2.9E-10 6.4E-15 90.6 18.5 251 68-334 9-265 (290)
86 PF04733 Coatomer_E: Coatomer 99.3 4.3E-10 9.2E-15 89.7 17.9 249 103-367 9-263 (290)
87 KOG2047 mRNA splicing factor [ 99.3 3.5E-07 7.5E-12 77.5 35.9 336 21-368 104-578 (835)
88 KOG2376 Signal recognition par 99.3 3E-07 6.6E-12 77.0 34.3 198 20-230 13-254 (652)
89 KOG0548 Molecular co-chaperone 99.3 1.1E-07 2.3E-12 78.7 30.1 96 1-105 19-114 (539)
90 KOG3785 Uncharacterized conser 99.3 8E-08 1.7E-12 75.5 28.0 322 26-366 29-454 (557)
91 KOG1125 TPR repeat-containing 99.3 1.2E-09 2.7E-14 90.6 18.4 219 138-366 293-524 (579)
92 PRK04841 transcriptional regul 99.3 2.1E-07 4.5E-12 88.3 36.0 307 62-368 411-759 (903)
93 KOG1125 TPR repeat-containing 99.2 5.6E-09 1.2E-13 86.8 21.6 225 25-263 291-526 (579)
94 PLN02789 farnesyltranstransfer 99.2 8.1E-08 1.8E-12 77.8 26.5 214 21-246 39-266 (320)
95 KOG0624 dsRNA-activated protei 99.2 5.9E-07 1.3E-11 70.4 31.7 285 2-300 56-371 (504)
96 KOG4162 Predicted calmodulin-b 99.2 6.8E-08 1.5E-12 83.2 25.7 312 2-333 462-782 (799)
97 KOG4340 Uncharacterized conser 99.2 3E-08 6.4E-13 76.0 20.9 293 61-365 11-335 (459)
98 PLN02789 farnesyltranstransfer 99.2 1.7E-07 3.8E-12 75.9 26.8 214 98-317 40-267 (320)
99 PRK04841 transcriptional regul 99.2 1.2E-06 2.7E-11 83.1 36.9 301 67-367 381-718 (903)
100 KOG1128 Uncharacterized conser 99.1 1.6E-08 3.4E-13 86.5 19.7 239 15-280 394-633 (777)
101 KOG1914 mRNA cleavage and poly 99.1 2.7E-06 5.7E-11 70.9 33.7 150 216-367 347-499 (656)
102 KOG1070 rRNA processing protei 99.1 1.4E-07 3E-12 86.5 25.7 230 127-360 1455-1691(1710)
103 KOG1070 rRNA processing protei 99.1 2.4E-07 5.2E-12 85.0 26.8 210 17-232 1456-1666(1710)
104 KOG1128 Uncharacterized conser 99.1 1.3E-08 2.8E-13 87.0 17.5 214 133-367 401-614 (777)
105 TIGR03302 OM_YfiO outer membra 99.1 5.8E-08 1.3E-12 76.3 19.6 185 18-229 32-232 (235)
106 PRK14720 transcript cleavage f 99.1 3.1E-07 6.7E-12 83.0 25.7 171 16-229 28-198 (906)
107 KOG0985 Vesicle coat protein c 99.1 3.5E-06 7.6E-11 75.4 31.2 311 5-365 968-1304(1666)
108 KOG0548 Molecular co-chaperone 99.1 1.3E-06 2.8E-11 72.6 26.9 327 27-368 10-454 (539)
109 COG5010 TadD Flp pilus assembl 99.0 1.6E-07 3.4E-12 70.8 19.6 165 164-333 66-230 (257)
110 TIGR03302 OM_YfiO outer membra 99.0 1E-07 2.3E-12 74.9 19.4 185 163-368 31-231 (235)
111 COG5010 TadD Flp pilus assembl 99.0 3.7E-07 8E-12 68.9 20.4 164 129-297 66-229 (257)
112 PRK10370 formate-dependent nit 99.0 5.3E-07 1.1E-11 68.1 20.1 118 109-229 53-173 (198)
113 KOG0985 Vesicle coat protein c 99.0 3.9E-06 8.4E-11 75.1 27.7 264 60-360 1104-1374(1666)
114 PRK10370 formate-dependent nit 98.9 9.4E-08 2E-12 72.1 15.4 128 31-168 51-181 (198)
115 PRK15359 type III secretion sy 98.9 9.3E-08 2E-12 68.3 14.4 95 22-124 27-121 (144)
116 KOG3617 WD40 and TPR repeat-co 98.9 4.7E-06 1E-10 73.1 26.7 163 18-193 756-940 (1416)
117 PRK15359 type III secretion sy 98.9 2.5E-07 5.3E-12 66.1 15.6 95 238-334 27-121 (144)
118 PRK14720 transcript cleavage f 98.9 1.9E-06 4.2E-11 78.1 24.4 235 57-316 28-268 (906)
119 KOG3081 Vesicle coat complex C 98.9 3.7E-06 7.9E-11 63.7 21.9 258 58-334 8-271 (299)
120 KOG3081 Vesicle coat complex C 98.9 4.6E-06 1E-10 63.2 22.4 137 137-284 115-255 (299)
121 KOG1127 TPR repeat-containing 98.9 2.7E-06 5.9E-11 75.9 24.1 164 19-192 492-657 (1238)
122 PF12854 PPR_1: PPR repeat 98.9 3.8E-09 8.3E-14 53.9 4.2 33 335-367 2-34 (34)
123 KOG1127 TPR repeat-containing 98.9 3.6E-06 7.7E-11 75.2 24.4 147 2-158 510-658 (1238)
124 PF12854 PPR_1: PPR repeat 98.9 3.7E-09 8E-14 53.9 3.7 34 13-46 1-34 (34)
125 TIGR02552 LcrH_SycD type III s 98.9 2.4E-07 5.2E-12 65.8 14.4 110 6-124 5-114 (135)
126 PRK15179 Vi polysaccharide bio 98.9 9.6E-07 2.1E-11 79.0 21.0 144 57-204 83-226 (694)
127 PRK15179 Vi polysaccharide bio 98.8 7E-06 1.5E-10 73.6 25.7 215 60-297 28-243 (694)
128 KOG3060 Uncharacterized conser 98.8 9.3E-06 2E-10 61.2 21.4 189 108-300 25-221 (289)
129 KOG3617 WD40 and TPR repeat-co 98.8 8.9E-06 1.9E-10 71.4 23.9 315 18-365 725-1105(1416)
130 KOG1914 mRNA cleavage and poly 98.8 5.7E-05 1.2E-09 63.3 28.9 115 251-368 347-463 (656)
131 KOG3616 Selective LIM binding 98.7 9.5E-06 2.1E-10 70.5 22.0 109 172-293 739-847 (1636)
132 KOG3060 Uncharacterized conser 98.7 4.9E-05 1.1E-09 57.4 25.4 193 32-230 25-221 (289)
133 TIGR02552 LcrH_SycD type III s 98.7 1.8E-06 4E-11 61.3 14.5 101 58-160 15-115 (135)
134 COG4783 Putative Zn-dependent 98.7 2E-05 4.3E-10 65.2 21.6 143 171-334 312-454 (484)
135 COG4783 Putative Zn-dependent 98.7 7.4E-05 1.6E-09 61.9 24.6 123 137-262 313-435 (484)
136 PF09976 TPR_21: Tetratricopep 98.7 4.4E-06 9.6E-11 60.0 15.8 126 237-366 14-144 (145)
137 KOG3616 Selective LIM binding 98.7 4.9E-05 1.1E-09 66.2 24.1 301 23-365 561-907 (1636)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.5E-06 5.4E-11 70.7 15.0 125 203-333 172-296 (395)
139 PF09976 TPR_21: Tetratricopep 98.6 6.5E-06 1.4E-10 59.1 14.5 128 21-155 14-143 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 9.3E-06 2E-10 67.4 16.1 127 166-298 170-296 (395)
141 PF12895 Apc3: Anaphase-promot 98.4 1.2E-06 2.7E-11 56.1 6.9 81 283-365 2-83 (84)
142 cd00189 TPR Tetratricopeptide 98.4 8.6E-06 1.9E-10 53.7 11.0 96 21-124 2-97 (100)
143 KOG2053 Mitochondrial inherita 98.4 0.0015 3.2E-08 58.5 31.8 225 29-265 19-256 (932)
144 PRK15363 pathogenicity island 98.4 1.2E-05 2.6E-10 56.6 11.3 95 62-158 37-131 (157)
145 PRK15363 pathogenicity island 98.4 1.6E-05 3.4E-10 56.1 11.5 98 235-334 35-132 (157)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.4E-05 7.3E-10 53.3 13.1 101 20-124 3-105 (119)
147 cd00189 TPR Tetratricopeptide 98.3 1.4E-05 3.1E-10 52.6 10.0 90 241-332 6-95 (100)
148 KOG0550 Molecular chaperone (D 98.3 0.0015 3.2E-08 53.3 22.8 265 24-300 54-351 (486)
149 PF10037 MRP-S27: Mitochondria 98.3 3E-05 6.5E-10 64.8 12.7 122 197-318 63-186 (429)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.0001 2.2E-09 50.9 13.7 26 273-298 79-104 (119)
151 PF14938 SNAP: Soluble NSF att 98.2 0.00022 4.7E-09 57.6 17.4 164 132-298 37-224 (282)
152 PF10037 MRP-S27: Mitochondria 98.2 3.7E-05 8E-10 64.3 13.0 123 16-142 63-185 (429)
153 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.2E-11 43.9 4.4 32 98-129 3-34 (35)
154 KOG2053 Mitochondrial inherita 98.2 0.0034 7.4E-08 56.4 36.5 100 2-113 27-128 (932)
155 PF05843 Suf: Suppressor of fo 98.2 6E-05 1.3E-09 60.5 13.6 131 20-159 2-136 (280)
156 PF05843 Suf: Suppressor of fo 98.2 0.00013 2.7E-09 58.7 15.4 131 201-334 2-136 (280)
157 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.3E-11 43.9 4.1 34 62-95 2-35 (35)
158 PF12895 Apc3: Anaphase-promot 98.2 4.2E-06 9E-11 53.7 5.7 79 249-329 3-82 (84)
159 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.4E-11 43.3 4.2 32 62-93 3-34 (34)
160 PLN03088 SGT1, suppressor of 98.2 7.7E-05 1.7E-09 62.2 14.4 94 24-125 7-100 (356)
161 PF14938 SNAP: Soluble NSF att 98.2 0.00064 1.4E-08 54.9 19.2 166 96-264 36-225 (282)
162 PRK10866 outer membrane biogen 98.2 0.0016 3.5E-08 51.1 21.0 63 61-124 33-98 (243)
163 PRK10866 outer membrane biogen 98.2 0.0015 3.3E-08 51.2 20.3 183 18-226 31-238 (243)
164 PF13812 PPR_3: Pentatricopept 98.2 3.9E-06 8.4E-11 43.1 4.1 33 96-128 2-34 (34)
165 PLN03088 SGT1, suppressor of 98.2 9.3E-05 2E-09 61.7 13.9 92 207-300 9-100 (356)
166 PRK10153 DNA-binding transcrip 98.1 0.00042 9.1E-09 60.5 17.8 139 13-160 331-483 (517)
167 PRK02603 photosystem I assembl 98.1 0.00031 6.8E-09 52.1 14.8 84 202-286 37-122 (172)
168 CHL00033 ycf3 photosystem I as 98.1 0.00018 3.9E-09 53.2 12.9 63 61-123 36-100 (168)
169 KOG0550 Molecular chaperone (D 98.1 0.0015 3.3E-08 53.3 18.5 266 63-334 52-350 (486)
170 PRK02603 photosystem I assembl 98.1 0.0005 1.1E-08 51.0 15.1 91 165-256 35-127 (172)
171 PF14559 TPR_19: Tetratricopep 98.1 3.4E-05 7.4E-10 47.1 7.5 61 281-344 2-62 (68)
172 PF08579 RPM2: Mitochondrial r 98.1 0.00016 3.4E-09 47.5 10.5 78 64-141 29-115 (120)
173 CHL00033 ycf3 photosystem I as 98.1 0.00025 5.5E-09 52.4 13.3 61 203-263 38-100 (168)
174 PF14559 TPR_19: Tetratricopep 98.0 1.9E-05 4.1E-10 48.3 5.9 53 30-89 2-54 (68)
175 COG4235 Cytochrome c biogenesi 98.0 0.00044 9.6E-09 54.1 14.2 99 234-334 155-256 (287)
176 COG4700 Uncharacterized protei 98.0 0.0025 5.4E-08 46.2 17.2 157 172-332 63-220 (251)
177 COG4235 Cytochrome c biogenesi 98.0 0.00064 1.4E-08 53.2 14.7 102 57-160 153-257 (287)
178 PF13525 YfiO: Outer membrane 98.0 0.0036 7.7E-08 47.8 18.6 67 19-89 5-71 (203)
179 KOG0553 TPR repeat-containing 98.0 0.00018 3.9E-09 56.0 11.3 99 208-310 89-187 (304)
180 PF08579 RPM2: Mitochondrial r 98.0 0.00025 5.4E-09 46.5 10.2 78 100-177 30-116 (120)
181 KOG1130 Predicted G-alpha GTPa 98.0 0.00036 7.7E-09 56.8 13.1 265 27-298 25-343 (639)
182 PRK10153 DNA-binding transcrip 98.0 0.0016 3.6E-08 56.9 18.3 137 196-335 333-483 (517)
183 PF13414 TPR_11: TPR repeat; P 98.0 4.4E-05 9.6E-10 46.7 6.5 65 18-89 2-67 (69)
184 PF13432 TPR_16: Tetratricopep 97.9 5.8E-05 1.3E-09 45.5 6.8 58 25-89 3-60 (65)
185 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.6E-08 45.0 13.5 91 25-122 7-102 (120)
186 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.7E-08 45.0 13.6 95 64-158 5-103 (120)
187 KOG0553 TPR repeat-containing 97.9 0.00024 5.2E-09 55.3 11.1 100 69-172 90-189 (304)
188 PF13525 YfiO: Outer membrane 97.9 0.0056 1.2E-07 46.8 18.6 65 60-124 5-71 (203)
189 PF13432 TPR_16: Tetratricopep 97.9 6.7E-05 1.4E-09 45.3 6.4 56 277-333 4-59 (65)
190 KOG2041 WD40 repeat protein [G 97.8 0.013 2.8E-07 51.6 20.9 205 57-296 689-904 (1189)
191 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.6E-10 38.6 3.5 29 62-90 2-30 (31)
192 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.8E-10 38.6 3.6 29 97-125 2-30 (31)
193 PF13414 TPR_11: TPR repeat; P 97.8 0.00019 4.2E-09 43.8 7.5 60 167-227 5-65 (69)
194 KOG2041 WD40 repeat protein [G 97.8 0.022 4.7E-07 50.2 24.5 136 32-191 747-904 (1189)
195 PRK10803 tol-pal system protei 97.8 0.00061 1.3E-08 53.9 11.2 99 236-334 144-246 (263)
196 KOG1130 Predicted G-alpha GTPa 97.7 0.00071 1.5E-08 55.2 11.1 129 237-365 197-340 (639)
197 PRK15331 chaperone protein Sic 97.7 0.0014 3E-08 46.8 11.3 118 215-334 8-134 (165)
198 COG4700 Uncharacterized protei 97.7 0.0086 1.9E-07 43.5 19.0 155 69-227 65-220 (251)
199 PRK10803 tol-pal system protei 97.7 0.0013 2.9E-08 52.0 12.3 99 22-124 146-246 (263)
200 PF03704 BTAD: Bacterial trans 97.7 0.0096 2.1E-07 42.8 15.5 71 272-343 64-139 (146)
201 PF06239 ECSIT: Evolutionarily 97.6 0.001 2.2E-08 49.6 10.0 100 234-352 46-150 (228)
202 KOG1538 Uncharacterized conser 97.6 0.02 4.3E-07 50.0 18.7 22 313-334 825-846 (1081)
203 KOG2796 Uncharacterized conser 97.6 0.018 3.8E-07 44.4 24.1 229 21-265 71-316 (366)
204 PF06239 ECSIT: Evolutionarily 97.6 0.0039 8.4E-08 46.6 12.7 105 162-285 44-153 (228)
205 PRK15331 chaperone protein Sic 97.6 0.011 2.4E-07 42.3 14.2 91 206-298 43-133 (165)
206 PF03704 BTAD: Bacterial trans 97.6 0.0005 1.1E-08 49.4 7.9 74 60-134 62-140 (146)
207 KOG2796 Uncharacterized conser 97.5 0.024 5.1E-07 43.8 22.0 141 202-345 179-324 (366)
208 PF13424 TPR_12: Tetratricopep 97.5 0.00042 9.1E-09 43.6 6.1 61 306-366 6-72 (78)
209 PF07079 DUF1347: Protein of u 97.5 0.041 8.9E-07 46.0 36.3 80 286-367 437-522 (549)
210 PF13424 TPR_12: Tetratricopep 97.5 0.00019 4.1E-09 45.1 4.4 69 19-88 5-74 (78)
211 PF13371 TPR_9: Tetratricopept 97.5 0.00064 1.4E-08 42.1 6.8 55 279-334 4-58 (73)
212 PF13371 TPR_9: Tetratricopept 97.5 0.00093 2E-08 41.3 7.4 56 27-89 3-58 (73)
213 PF13281 DUF4071: Domain of un 97.5 0.044 9.6E-07 45.4 19.6 167 132-300 143-335 (374)
214 PF12921 ATP13: Mitochondrial 97.4 0.0047 1E-07 42.6 10.5 88 18-105 1-98 (126)
215 KOG1538 Uncharacterized conser 97.4 0.027 5.9E-07 49.2 16.8 38 115-155 620-657 (1081)
216 PF13281 DUF4071: Domain of un 97.3 0.07 1.5E-06 44.3 20.8 163 100-264 146-334 (374)
217 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.015 3.2E-07 48.9 13.7 66 16-89 72-141 (453)
218 KOG0543 FKBP-type peptidyl-pro 97.3 0.012 2.6E-07 48.3 12.8 94 205-299 213-320 (397)
219 KOG1258 mRNA processing protei 97.3 0.11 2.3E-06 45.3 25.8 332 18-360 44-420 (577)
220 PF04840 Vps16_C: Vps16, C-ter 97.2 0.082 1.8E-06 43.4 27.5 24 21-44 2-25 (319)
221 PF10300 DUF3808: Protein of u 97.2 0.033 7.1E-07 48.6 15.7 25 24-48 193-217 (468)
222 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.11 2.3E-06 43.7 31.0 81 16-105 39-119 (660)
223 PF10300 DUF3808: Protein of u 97.1 0.066 1.4E-06 46.7 17.0 162 203-367 191-374 (468)
224 COG3898 Uncharacterized membra 97.1 0.11 2.3E-06 42.8 30.1 49 142-191 166-214 (531)
225 COG3898 Uncharacterized membra 97.1 0.11 2.4E-06 42.7 30.1 49 177-226 166-214 (531)
226 KOG0543 FKBP-type peptidyl-pro 97.1 0.025 5.3E-07 46.6 12.9 128 169-298 212-354 (397)
227 COG3118 Thioredoxin domain-con 97.1 0.095 2.1E-06 41.4 17.0 145 27-180 142-287 (304)
228 KOG1585 Protein required for f 97.1 0.089 1.9E-06 40.3 18.1 55 308-363 193-250 (308)
229 PF13428 TPR_14: Tetratricopep 97.0 0.0019 4.2E-08 35.1 4.3 42 20-68 2-43 (44)
230 KOG2280 Vacuolar assembly/sort 97.0 0.24 5.1E-06 44.4 26.9 326 11-363 424-793 (829)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.038 8.3E-07 46.6 12.3 66 57-124 72-141 (453)
232 PF12921 ATP13: Mitochondrial 96.8 0.039 8.5E-07 38.1 10.6 50 266-315 48-98 (126)
233 KOG1258 mRNA processing protei 96.8 0.32 7E-06 42.4 30.0 112 3-123 64-179 (577)
234 PF08631 SPO22: Meiosis protei 96.8 0.22 4.7E-06 40.3 25.1 63 166-229 85-150 (278)
235 PRK11906 transcriptional regul 96.7 0.2 4.4E-06 42.5 15.7 114 2-124 276-401 (458)
236 KOG2610 Uncharacterized conser 96.7 0.1 2.2E-06 42.0 13.0 154 176-332 114-274 (491)
237 COG3118 Thioredoxin domain-con 96.7 0.22 4.8E-06 39.4 17.2 146 139-287 143-289 (304)
238 PF04053 Coatomer_WDAD: Coatom 96.7 0.14 3.1E-06 44.1 14.9 80 164-258 346-425 (443)
239 COG4105 ComL DNA uptake lipopr 96.7 0.21 4.6E-06 38.8 21.1 76 66-141 40-117 (254)
240 PRK11906 transcriptional regul 96.6 0.32 7E-06 41.4 16.2 144 215-363 273-430 (458)
241 PF13512 TPR_18: Tetratricopep 96.6 0.14 3E-06 36.0 11.6 66 20-89 11-76 (142)
242 PF13428 TPR_14: Tetratricopep 96.6 0.011 2.4E-07 32.1 5.2 27 273-299 4-30 (44)
243 KOG1941 Acetylcholine receptor 96.5 0.35 7.7E-06 39.5 15.4 227 70-297 16-273 (518)
244 COG1729 Uncharacterized protei 96.5 0.089 1.9E-06 41.1 11.4 91 30-124 152-244 (262)
245 COG1729 Uncharacterized protei 96.5 0.093 2E-06 41.0 11.4 88 212-299 153-244 (262)
246 KOG4555 TPR repeat-containing 96.5 0.15 3.2E-06 34.9 10.9 90 29-125 53-145 (175)
247 KOG1941 Acetylcholine receptor 96.5 0.22 4.7E-06 40.7 13.6 222 2-228 24-274 (518)
248 KOG2610 Uncharacterized conser 96.5 0.17 3.7E-06 40.8 12.8 156 140-297 113-274 (491)
249 PF04840 Vps16_C: Vps16, C-ter 96.5 0.39 8.5E-06 39.5 25.9 109 237-365 179-287 (319)
250 KOG2280 Vacuolar assembly/sort 96.4 0.65 1.4E-05 41.8 22.4 287 65-366 442-770 (829)
251 KOG4555 TPR repeat-containing 96.4 0.17 3.6E-06 34.7 11.3 92 68-160 51-145 (175)
252 COG4649 Uncharacterized protei 96.4 0.23 4.9E-06 36.0 13.2 139 18-163 58-200 (221)
253 PF04053 Coatomer_WDAD: Coatom 96.4 0.15 3.3E-06 43.9 13.3 161 26-226 268-428 (443)
254 COG4105 ComL DNA uptake lipopr 96.4 0.33 7.2E-06 37.7 20.5 81 21-106 36-117 (254)
255 COG0457 NrfG FOG: TPR repeat [ 96.3 0.38 8.2E-06 37.5 28.5 225 108-334 36-265 (291)
256 KOG1585 Protein required for f 96.3 0.36 7.7E-06 37.2 18.0 29 60-88 31-59 (308)
257 PF04184 ST7: ST7 protein; In 96.2 0.7 1.5E-05 39.7 18.9 76 132-207 261-338 (539)
258 KOG1920 IkappaB kinase complex 96.2 1.2 2.7E-05 42.4 21.5 42 80-123 777-820 (1265)
259 COG3629 DnrI DNA-binding trans 96.1 0.1 2.2E-06 41.5 10.0 79 60-139 153-236 (280)
260 KOG2114 Vacuolar assembly/sort 96.1 0.6 1.3E-05 42.6 15.5 178 133-332 337-517 (933)
261 COG4785 NlpI Lipoprotein NlpI, 96.0 0.48 1E-05 35.8 13.9 177 147-335 82-267 (297)
262 KOG2114 Vacuolar assembly/sort 95.9 0.48 1E-05 43.2 14.2 150 21-189 336-487 (933)
263 COG0457 NrfG FOG: TPR repeat [ 95.8 0.66 1.4E-05 36.1 28.6 225 74-300 37-266 (291)
264 PF08631 SPO22: Meiosis protei 95.8 0.81 1.8E-05 37.0 24.8 164 70-235 3-192 (278)
265 COG3629 DnrI DNA-binding trans 95.8 0.14 3E-06 40.7 9.5 77 236-313 154-235 (280)
266 PF07079 DUF1347: Protein of u 95.8 1 2.2E-05 38.2 31.1 115 216-333 396-523 (549)
267 smart00299 CLH Clathrin heavy 95.6 0.5 1.1E-05 33.6 15.5 43 24-73 12-54 (140)
268 PF13512 TPR_18: Tetratricopep 95.6 0.48 1E-05 33.3 12.8 82 60-142 10-94 (142)
269 PF13176 TPR_7: Tetratricopept 95.6 0.031 6.8E-07 28.7 3.8 23 343-365 2-24 (36)
270 smart00299 CLH Clathrin heavy 95.5 0.55 1.2E-05 33.4 16.0 126 63-211 10-136 (140)
271 PF10602 RPN7: 26S proteasome 95.5 0.44 9.5E-06 35.4 10.8 60 62-121 38-99 (177)
272 KOG3941 Intermediate in Toll s 95.4 0.25 5.4E-06 38.8 9.3 105 162-285 64-173 (406)
273 PF13431 TPR_17: Tetratricopep 95.4 0.024 5.2E-07 28.7 2.8 32 7-39 2-33 (34)
274 PF13431 TPR_17: Tetratricopep 95.3 0.024 5.2E-07 28.7 2.7 32 42-80 2-33 (34)
275 PF09205 DUF1955: Domain of un 95.3 0.58 1.3E-05 32.2 12.8 67 269-336 85-151 (161)
276 PF13176 TPR_7: Tetratricopept 95.2 0.053 1.1E-06 27.8 3.8 27 21-47 1-27 (36)
277 COG4649 Uncharacterized protei 95.2 0.84 1.8E-05 33.2 13.9 139 199-338 58-200 (221)
278 PF10602 RPN7: 26S proteasome 95.1 0.44 9.5E-06 35.4 9.7 64 96-159 37-102 (177)
279 PF09613 HrpB1_HrpK: Bacterial 95.0 0.88 1.9E-05 32.8 12.8 51 30-88 21-72 (160)
280 PF13170 DUF4003: Protein of u 95.0 1.6 3.5E-05 35.6 19.5 138 181-320 78-232 (297)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 95.0 0.21 4.6E-06 32.0 6.5 60 2-68 25-84 (103)
282 COG5107 RNA14 Pre-mRNA 3'-end 95.0 2 4.4E-05 36.5 22.0 127 133-263 400-530 (660)
283 PF04097 Nic96: Nup93/Nic96; 94.9 3 6.6E-05 38.2 22.7 222 137-366 265-531 (613)
284 KOG1920 IkappaB kinase complex 94.8 4 8.8E-05 39.3 20.1 77 276-363 971-1049(1265)
285 KOG0890 Protein kinase of the 94.7 6.3 0.00014 41.1 25.4 322 24-368 1388-1730(2382)
286 KOG3941 Intermediate in Toll s 94.7 0.61 1.3E-05 36.8 9.7 105 127-250 64-173 (406)
287 PF07035 Mic1: Colon cancer-as 94.6 1.2 2.7E-05 32.5 15.5 38 5-42 15-52 (167)
288 PF04184 ST7: ST7 protein; In 94.6 2.7 5.8E-05 36.4 19.8 164 66-244 174-340 (539)
289 PF02284 COX5A: Cytochrome c o 94.4 0.32 7E-06 31.6 6.4 59 3-68 29-87 (108)
290 COG4785 NlpI Lipoprotein NlpI, 94.3 1.8 3.8E-05 33.0 15.7 30 270-299 237-266 (297)
291 PRK15180 Vi polysaccharide bio 94.2 3.2 6.9E-05 35.7 13.8 128 25-161 295-422 (831)
292 PF09205 DUF1955: Domain of un 94.1 1.3 2.8E-05 30.6 15.4 64 237-301 88-151 (161)
293 PF07035 Mic1: Colon cancer-as 93.9 1.8 3.9E-05 31.6 15.0 134 81-228 15-148 (167)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.73 1.6E-05 29.7 7.2 45 253-297 25-69 (103)
295 PF07719 TPR_2: Tetratricopept 93.8 0.2 4.4E-06 24.9 4.1 27 341-367 2-28 (34)
296 PF00515 TPR_1: Tetratricopept 93.7 0.22 4.7E-06 24.9 4.1 27 341-367 2-28 (34)
297 PRK15180 Vi polysaccharide bio 93.7 4.2 9E-05 35.1 14.5 124 69-195 298-421 (831)
298 TIGR02561 HrpB1_HrpK type III 93.7 1.8 3.8E-05 30.7 11.9 52 30-89 21-73 (153)
299 PF00515 TPR_1: Tetratricopept 93.7 0.19 4.1E-06 25.2 3.8 30 20-49 2-31 (34)
300 PRK11619 lytic murein transgly 93.6 5.9 0.00013 36.5 30.6 310 29-367 43-373 (644)
301 KOG4570 Uncharacterized conser 93.6 0.82 1.8E-05 36.7 8.6 104 159-264 58-164 (418)
302 PF07719 TPR_2: Tetratricopept 93.5 0.2 4.4E-06 24.9 3.8 30 20-49 2-31 (34)
303 KOG1550 Extracellular protein 93.4 5.9 0.00013 35.9 26.3 180 2-195 230-427 (552)
304 COG2976 Uncharacterized protei 93.3 2.6 5.6E-05 31.5 13.9 89 242-335 96-189 (207)
305 PF13170 DUF4003: Protein of u 93.2 4 8.7E-05 33.3 20.9 130 76-207 78-224 (297)
306 TIGR02561 HrpB1_HrpK type III 93.2 2.2 4.8E-05 30.3 10.5 53 246-300 21-74 (153)
307 KOG1550 Extracellular protein 93.1 6.5 0.00014 35.6 26.8 245 76-334 228-504 (552)
308 PF13374 TPR_10: Tetratricopep 93.1 0.27 5.9E-06 25.9 4.1 25 342-366 4-28 (42)
309 PF11207 DUF2989: Protein of u 93.1 0.9 2E-05 34.1 7.8 74 36-115 123-198 (203)
310 PF11207 DUF2989: Protein of u 93.1 1.5 3.2E-05 32.9 8.9 80 104-185 116-198 (203)
311 KOG4234 TPR repeat-containing 93.0 1.6 3.5E-05 32.7 8.8 91 208-299 103-197 (271)
312 PF08424 NRDE-2: NRDE-2, neces 93.0 4.7 0.0001 33.5 16.0 107 7-122 8-129 (321)
313 KOG4234 TPR repeat-containing 92.9 1.8 3.9E-05 32.4 8.9 90 243-334 103-197 (271)
314 PF02284 COX5A: Cytochrome c o 92.9 1.8 3.8E-05 28.4 9.2 47 253-299 28-74 (108)
315 PF07721 TPR_4: Tetratricopept 92.8 0.21 4.6E-06 23.3 2.9 22 343-364 4-25 (26)
316 PF09613 HrpB1_HrpK: Bacterial 92.8 2.8 6E-05 30.3 12.7 51 211-263 21-72 (160)
317 COG2909 MalT ATP-dependent tra 92.7 8.8 0.00019 35.9 27.8 227 104-330 424-684 (894)
318 COG4455 ImpE Protein of avirul 92.5 1.5 3.1E-05 33.4 8.2 76 22-104 4-81 (273)
319 PF13174 TPR_6: Tetratricopept 92.4 0.21 4.5E-06 24.7 2.9 26 343-368 3-28 (33)
320 PF13929 mRNA_stabil: mRNA sta 92.3 5 0.00011 32.2 13.8 137 216-352 144-290 (292)
321 PF00637 Clathrin: Region in C 92.1 0.2 4.2E-06 35.8 3.4 86 241-333 13-98 (143)
322 KOG4570 Uncharacterized conser 92.1 2.3 4.9E-05 34.4 9.2 101 232-334 61-164 (418)
323 COG1747 Uncharacterized N-term 92.0 7.9 0.00017 33.8 25.4 181 92-280 63-249 (711)
324 PF13174 TPR_6: Tetratricopept 91.9 0.27 5.8E-06 24.2 2.9 29 21-49 2-30 (33)
325 PF13181 TPR_8: Tetratricopept 91.6 0.61 1.3E-05 23.2 4.1 26 342-367 3-28 (34)
326 PF02259 FAT: FAT domain; Int 91.2 8.2 0.00018 32.5 23.3 66 198-263 144-212 (352)
327 PF13374 TPR_10: Tetratricopep 91.2 0.73 1.6E-05 24.2 4.3 26 97-122 4-29 (42)
328 PF06552 TOM20_plant: Plant sp 91.0 2.8 6.2E-05 30.9 8.1 95 216-315 7-123 (186)
329 COG2909 MalT ATP-dependent tra 90.5 15 0.00033 34.5 24.0 191 174-367 424-645 (894)
330 PF07163 Pex26: Pex26 protein; 90.1 5.6 0.00012 31.7 9.5 123 66-188 41-181 (309)
331 PF06552 TOM20_plant: Plant sp 89.7 3.2 7E-05 30.6 7.5 108 2-125 9-137 (186)
332 PF13181 TPR_8: Tetratricopept 89.6 1.1 2.4E-05 22.2 4.0 27 62-88 3-29 (34)
333 TIGR03504 FimV_Cterm FimV C-te 89.5 0.75 1.6E-05 24.8 3.3 22 276-297 5-26 (44)
334 COG4455 ImpE Protein of avirul 89.5 3.7 8E-05 31.3 7.8 77 237-314 3-81 (273)
335 KOG4648 Uncharacterized conser 89.2 3.4 7.3E-05 33.9 8.0 90 27-124 105-194 (536)
336 PF00637 Clathrin: Region in C 89.2 0.22 4.7E-06 35.6 1.4 130 205-356 12-141 (143)
337 COG1747 Uncharacterized N-term 88.8 16 0.00034 32.1 25.3 182 127-316 63-250 (711)
338 PF10579 Rapsyn_N: Rapsyn N-te 88.6 1.5 3.3E-05 27.1 4.5 45 317-361 18-64 (80)
339 COG3947 Response regulator con 88.6 11 0.00025 30.3 15.9 58 133-191 282-339 (361)
340 KOG0276 Vesicle coat complex C 88.5 18 0.00039 32.5 13.1 151 30-226 597-747 (794)
341 PF07163 Pex26: Pex26 protein; 88.5 11 0.00024 30.1 12.8 120 104-223 44-181 (309)
342 KOG4077 Cytochrome c oxidase, 88.5 3.7 8.1E-05 28.1 6.6 47 3-49 68-114 (149)
343 KOG4642 Chaperone-dependent E3 88.5 10 0.00022 29.6 10.2 119 209-331 19-143 (284)
344 PF10345 Cohesin_load: Cohesin 88.4 21 0.00045 33.0 35.6 182 3-191 40-251 (608)
345 KOG4648 Uncharacterized conser 88.4 6 0.00013 32.5 8.8 91 171-263 103-193 (536)
346 KOG0276 Vesicle coat complex C 88.0 13 0.00028 33.3 11.1 26 166-191 667-692 (794)
347 cd08819 CARD_MDA5_2 Caspase ac 87.2 5.7 0.00012 25.2 6.8 68 2-81 20-87 (88)
348 PF13929 mRNA_stabil: mRNA sta 87.2 14 0.00031 29.8 16.1 115 75-189 143-262 (292)
349 TIGR03504 FimV_Cterm FimV C-te 87.1 2.6 5.5E-05 22.8 4.3 18 104-121 8-25 (44)
350 KOG4642 Chaperone-dependent E3 87.0 13 0.00028 29.0 10.7 81 31-121 22-104 (284)
351 COG2976 Uncharacterized protei 86.8 11 0.00025 28.3 14.9 93 206-300 95-189 (207)
352 KOG1464 COP9 signalosome, subu 86.7 14 0.00031 29.3 18.5 208 89-297 20-259 (440)
353 KOG4077 Cytochrome c oxidase, 86.3 7.9 0.00017 26.6 7.1 45 254-298 68-112 (149)
354 PF08424 NRDE-2: NRDE-2, neces 86.1 19 0.0004 30.0 16.6 98 197-296 16-128 (321)
355 PF02259 FAT: FAT domain; Int 85.4 21 0.00045 30.0 22.5 67 162-228 143-212 (352)
356 KOG1586 Protein required for f 85.2 16 0.00035 28.5 21.3 15 73-87 27-41 (288)
357 COG5159 RPN6 26S proteasome re 85.0 18 0.0004 29.0 12.1 23 204-226 129-151 (421)
358 PRK09687 putative lyase; Provi 84.9 19 0.00042 29.2 27.6 234 58-316 35-278 (280)
359 PF10579 Rapsyn_N: Rapsyn N-te 84.4 4.8 0.0001 25.0 5.1 46 282-327 18-65 (80)
360 PF07575 Nucleopor_Nup85: Nup8 84.1 34 0.00073 31.3 19.0 75 221-297 391-465 (566)
361 PF07575 Nucleopor_Nup85: Nup8 84.1 31 0.00066 31.6 12.3 25 167-191 407-431 (566)
362 KOG2471 TPR repeat-containing 83.8 29 0.00063 30.4 15.3 279 71-353 28-382 (696)
363 KOG3364 Membrane protein invol 83.3 13 0.00029 26.0 8.4 68 267-334 29-100 (149)
364 KOG4507 Uncharacterized conser 82.9 8.6 0.00019 34.2 7.8 99 213-313 620-718 (886)
365 smart00028 TPR Tetratricopepti 82.4 3.4 7.4E-05 19.3 3.6 30 20-49 2-31 (34)
366 COG3947 Response regulator con 81.6 26 0.00057 28.3 16.1 60 272-332 281-340 (361)
367 PF14689 SPOB_a: Sensor_kinase 81.6 3.3 7.2E-05 24.4 3.6 46 286-333 6-51 (62)
368 PF04190 DUF410: Protein of un 81.3 26 0.00057 28.1 15.1 26 268-293 88-113 (260)
369 KOG4507 Uncharacterized conser 81.1 12 0.00026 33.4 8.0 103 127-230 604-706 (886)
370 PRK09687 putative lyase; Provi 81.0 28 0.00062 28.3 28.7 234 93-351 35-278 (280)
371 KOG2396 HAT (Half-A-TPR) repea 81.0 38 0.00083 29.8 33.2 92 273-366 463-556 (568)
372 KOG1464 COP9 signalosome, subu 80.8 27 0.00058 27.9 18.0 204 56-260 22-256 (440)
373 PF09986 DUF2225: Uncharacteri 80.6 24 0.00052 27.3 8.9 25 100-124 170-194 (214)
374 PF10345 Cohesin_load: Cohesin 80.2 50 0.0011 30.6 33.8 196 17-227 28-252 (608)
375 PRK10941 hypothetical protein; 79.8 30 0.00066 27.9 9.9 55 277-332 188-242 (269)
376 cd00280 TRFH Telomeric Repeat 79.0 22 0.00048 26.5 7.7 22 277-298 118-139 (200)
377 COG0790 FOG: TPR repeat, SEL1 78.3 36 0.00077 27.8 24.2 50 75-127 92-145 (292)
378 PRK12798 chemotaxis protein; R 78.1 44 0.00095 28.7 23.4 198 142-340 124-330 (421)
379 PF14689 SPOB_a: Sensor_kinase 77.6 12 0.00026 22.0 5.3 23 205-227 28-50 (62)
380 PF11846 DUF3366: Domain of un 76.7 13 0.00027 28.2 6.5 33 302-334 141-173 (193)
381 COG0735 Fur Fe2+/Zn2+ uptake r 76.3 24 0.00051 25.3 7.3 63 5-74 7-69 (145)
382 cd00280 TRFH Telomeric Repeat 75.5 27 0.00059 26.0 7.3 49 286-334 85-140 (200)
383 PF11817 Foie-gras_1: Foie gra 75.3 23 0.00049 28.2 7.7 57 310-366 183-244 (247)
384 KOG3364 Membrane protein invol 75.1 26 0.00057 24.6 8.4 67 58-124 30-100 (149)
385 KOG1586 Protein required for f 75.0 38 0.00083 26.5 21.5 55 144-198 128-187 (288)
386 PF09670 Cas_Cas02710: CRISPR- 74.7 54 0.0012 28.1 12.3 55 209-264 140-198 (379)
387 PF11846 DUF3366: Domain of un 74.6 11 0.00023 28.6 5.6 44 4-49 131-174 (193)
388 PF09477 Type_III_YscG: Bacter 74.2 23 0.0005 23.6 7.7 81 32-125 19-99 (116)
389 KOG2063 Vacuolar assembly/sort 73.7 90 0.0019 30.2 18.2 26 22-47 507-532 (877)
390 PF05944 Phage_term_smal: Phag 73.5 29 0.00062 24.4 6.9 31 272-302 50-80 (132)
391 PRK10941 hypothetical protein; 73.0 48 0.001 26.8 9.9 78 62-140 183-261 (269)
392 PF12862 Apc5: Anaphase-promot 72.7 19 0.00042 23.3 5.7 55 280-334 8-70 (94)
393 KOG0686 COP9 signalosome, subu 72.2 62 0.0013 27.7 14.8 62 132-193 152-215 (466)
394 KOG1308 Hsp70-interacting prot 71.9 3 6.5E-05 34.1 2.1 92 72-165 126-217 (377)
395 KOG0376 Serine-threonine phosp 71.6 14 0.00031 31.9 6.0 105 26-140 11-115 (476)
396 PF12862 Apc5: Anaphase-promot 71.4 25 0.00054 22.8 6.4 58 29-88 8-69 (94)
397 KOG2471 TPR repeat-containing 71.4 73 0.0016 28.2 17.0 109 208-317 248-381 (696)
398 PF12926 MOZART2: Mitotic-spin 71.1 24 0.00052 22.4 5.7 46 4-49 28-73 (88)
399 PF05944 Phage_term_smal: Phag 70.8 34 0.00073 24.0 7.8 27 65-91 53-79 (132)
400 smart00386 HAT HAT (Half-A-TPR 69.8 10 0.00022 18.0 3.2 29 33-68 1-29 (33)
401 PF04097 Nic96: Nup93/Nic96; 69.7 96 0.0021 28.8 21.5 88 207-299 265-356 (613)
402 PF10255 Paf67: RNA polymerase 69.5 59 0.0013 28.1 9.1 68 21-88 124-192 (404)
403 PF10255 Paf67: RNA polymerase 69.2 50 0.0011 28.5 8.6 24 342-365 166-189 (404)
404 KOG0686 COP9 signalosome, subu 69.1 74 0.0016 27.3 14.8 173 96-277 151-351 (466)
405 KOG0376 Serine-threonine phosp 68.9 13 0.00028 32.2 5.2 104 207-315 11-115 (476)
406 KOG2300 Uncharacterized conser 67.8 87 0.0019 27.7 29.1 335 31-367 59-472 (629)
407 COG0735 Fur Fe2+/Zn2+ uptake r 67.8 43 0.00092 24.0 7.7 59 120-179 11-69 (145)
408 PF09454 Vps23_core: Vps23 cor 67.6 11 0.00024 22.5 3.4 51 16-73 5-55 (65)
409 COG5108 RPO41 Mitochondrial DN 66.9 64 0.0014 29.7 9.0 76 24-106 33-114 (1117)
410 PF14561 TPR_20: Tetratricopep 66.9 31 0.00068 22.2 8.2 30 269-298 21-50 (90)
411 KOG1308 Hsp70-interacting prot 66.0 4.4 9.6E-05 33.2 1.9 121 27-158 122-243 (377)
412 KOG0890 Protein kinase of the 65.9 2.1E+02 0.0045 31.3 24.8 288 21-333 1422-1730(2382)
413 PF09670 Cas_Cas02710: CRISPR- 65.9 87 0.0019 26.9 11.0 57 172-229 138-198 (379)
414 TIGR02508 type_III_yscG type I 65.4 37 0.0008 22.5 8.2 79 250-335 20-98 (115)
415 PRK10564 maltose regulon perip 64.5 25 0.00055 28.6 5.7 36 168-203 260-295 (303)
416 KOG4567 GTPase-activating prot 64.3 80 0.0017 26.0 9.0 41 257-297 265-305 (370)
417 PRK12798 chemotaxis protein; R 64.2 96 0.0021 26.8 22.6 195 73-269 125-329 (421)
418 PF02184 HAT: HAT (Half-A-TPR) 64.2 14 0.00031 18.3 2.7 25 1-27 4-28 (32)
419 PF13762 MNE1: Mitochondrial s 63.7 52 0.0011 23.6 11.6 93 86-178 28-128 (145)
420 PF11817 Foie-gras_1: Foie gra 63.7 74 0.0016 25.3 8.4 23 25-47 16-38 (247)
421 PRK10564 maltose regulon perip 63.6 20 0.00043 29.2 5.0 30 63-92 260-289 (303)
422 PF07720 TPR_3: Tetratricopept 63.5 19 0.00041 18.4 3.8 22 343-364 4-25 (36)
423 cd08819 CARD_MDA5_2 Caspase ac 63.2 37 0.0008 21.7 6.8 36 177-217 48-83 (88)
424 PF10366 Vps39_1: Vacuolar sor 63.1 44 0.00094 22.5 7.6 26 203-228 42-67 (108)
425 PF14561 TPR_20: Tetratricopep 62.8 39 0.00084 21.8 9.2 64 6-75 10-73 (90)
426 KOG2066 Vacuolar assembly/sort 62.0 1.4E+02 0.0031 28.1 24.9 153 26-193 363-533 (846)
427 KOG1839 Uncharacterized protei 61.7 1.4E+02 0.0031 30.0 10.8 108 16-123 970-1085(1236)
428 KOG0545 Aryl-hydrocarbon recep 61.6 80 0.0017 25.1 8.8 98 236-334 179-293 (329)
429 COG0790 FOG: TPR repeat, SEL1 61.2 89 0.0019 25.5 24.0 144 3-161 60-222 (292)
430 PF11838 ERAP1_C: ERAP1-like C 60.2 99 0.0021 25.7 12.5 117 31-153 142-260 (324)
431 KOG2066 Vacuolar assembly/sort 59.5 1.6E+02 0.0035 27.9 23.7 125 19-158 392-533 (846)
432 PF14853 Fis1_TPR_C: Fis1 C-te 59.3 31 0.00067 19.6 5.7 29 21-49 3-31 (53)
433 COG5108 RPO41 Mitochondrial DN 59.1 1.1E+02 0.0024 28.3 9.0 74 65-141 33-114 (1117)
434 PF04762 IKI3: IKI3 family; I 58.8 1.8E+02 0.0039 28.8 11.2 195 170-366 699-927 (928)
435 PRK11639 zinc uptake transcrip 58.4 73 0.0016 23.6 7.2 63 8-77 15-77 (169)
436 KOG4521 Nuclear pore complex, 57.5 2.1E+02 0.0046 28.7 15.0 56 133-188 986-1044(1480)
437 PF11663 Toxin_YhaV: Toxin wit 57.1 15 0.00032 25.7 2.9 30 143-174 108-137 (140)
438 PF13762 MNE1: Mitochondrial s 57.0 70 0.0015 22.9 10.4 86 22-108 42-128 (145)
439 KOG2659 LisH motif-containing 57.0 93 0.002 24.3 8.9 114 231-346 22-144 (228)
440 PF11848 DUF3368: Domain of un 56.8 32 0.00069 19.0 4.8 13 113-125 20-32 (48)
441 PF09454 Vps23_core: Vps23 cor 56.5 41 0.00089 20.1 4.8 51 56-107 4-54 (65)
442 KOG2062 26S proteasome regulat 55.5 1.9E+02 0.004 27.4 21.5 120 244-367 510-633 (929)
443 PF00244 14-3-3: 14-3-3 protei 54.8 1.1E+02 0.0023 24.3 11.0 38 101-138 7-44 (236)
444 PF15297 CKAP2_C: Cytoskeleton 54.6 72 0.0016 26.7 6.8 62 2-71 121-186 (353)
445 PF04910 Tcf25: Transcriptiona 53.8 1.4E+02 0.0031 25.5 18.6 101 162-262 37-166 (360)
446 PRK11619 lytic murein transgly 53.6 2E+02 0.0043 27.1 34.0 121 239-363 316-462 (644)
447 KOG0128 RNA-binding protein SA 52.9 2.2E+02 0.0047 27.3 28.9 110 251-361 442-555 (881)
448 PF09986 DUF2225: Uncharacteri 52.4 1.1E+02 0.0024 23.8 10.8 29 167-195 167-195 (214)
449 KOG1839 Uncharacterized protei 52.0 2.7E+02 0.0059 28.3 12.6 100 129-228 972-1085(1236)
450 TIGR02508 type_III_yscG type I 51.1 71 0.0015 21.2 8.7 12 141-152 50-61 (115)
451 KOG2062 26S proteasome regulat 49.9 2.3E+02 0.005 26.8 19.3 186 35-229 39-239 (929)
452 KOG0991 Replication factor C, 48.6 1.4E+02 0.0029 23.7 15.3 35 268-303 237-271 (333)
453 COG2256 MGS1 ATPase related to 48.5 1.8E+02 0.0039 25.2 16.1 141 75-232 164-321 (436)
454 PF07678 A2M_comp: A-macroglob 47.6 1.2E+02 0.0026 24.1 7.2 45 252-298 116-160 (246)
455 KOG2396 HAT (Half-A-TPR) repea 47.2 2.1E+02 0.0046 25.6 25.4 242 78-333 300-558 (568)
456 PF04910 Tcf25: Transcriptiona 46.8 1.9E+02 0.004 24.8 21.2 120 104-228 19-167 (360)
457 PF11663 Toxin_YhaV: Toxin wit 46.0 17 0.00037 25.4 1.9 31 72-104 107-137 (140)
458 PRK13342 recombination factor 45.8 2.1E+02 0.0045 25.1 18.5 58 178-235 243-305 (413)
459 COG4941 Predicted RNA polymera 45.8 1.8E+02 0.004 24.4 10.8 113 251-366 272-391 (415)
460 PF13934 ELYS: Nuclear pore co 45.6 1.5E+02 0.0032 23.3 16.3 20 241-260 114-133 (226)
461 cd07153 Fur_like Ferric uptake 45.4 68 0.0015 21.7 4.9 10 114-123 19-28 (116)
462 KOG2659 LisH motif-containing 45.4 1.5E+02 0.0032 23.3 11.4 99 197-297 23-130 (228)
463 PF11123 DNA_Packaging_2: DNA 45.4 71 0.0015 19.6 4.7 35 32-73 10-44 (82)
464 KOG2422 Uncharacterized conser 45.1 2.5E+02 0.0053 25.7 16.1 172 175-350 248-460 (665)
465 PF03745 DUF309: Domain of unk 44.7 65 0.0014 19.0 6.1 50 28-83 8-62 (62)
466 COG5191 Uncharacterized conser 44.6 1.1E+02 0.0023 25.4 6.2 67 16-89 104-171 (435)
467 PF04190 DUF410: Protein of un 43.6 1.7E+02 0.0038 23.6 20.0 25 164-188 89-113 (260)
468 cd07153 Fur_like Ferric uptake 43.6 97 0.0021 20.9 5.4 46 136-181 6-51 (116)
469 PRK11639 zinc uptake transcrip 43.1 1.4E+02 0.0029 22.2 7.3 38 107-144 37-74 (169)
470 KOG0128 RNA-binding protein SA 43.1 3.1E+02 0.0068 26.3 30.0 200 17-228 111-340 (881)
471 PF10963 DUF2765: Protein of u 42.6 88 0.0019 19.9 4.9 33 15-47 12-44 (83)
472 PF01475 FUR: Ferric uptake re 42.2 59 0.0013 22.2 4.2 13 112-124 24-36 (120)
473 PRK09462 fur ferric uptake reg 42.0 1.3E+02 0.0028 21.6 7.2 34 146-179 33-66 (148)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 41.9 1.2E+02 0.0026 21.1 8.5 77 4-87 50-126 (126)
475 PRK09462 fur ferric uptake reg 41.2 1.3E+02 0.0029 21.5 7.6 35 110-144 32-66 (148)
476 COG4941 Predicted RNA polymera 41.1 2.2E+02 0.0047 24.0 11.6 117 76-195 272-395 (415)
477 KOG0551 Hsp90 co-chaperone CNS 40.7 2.2E+02 0.0048 24.0 8.2 97 236-333 82-181 (390)
478 KOG2582 COP9 signalosome, subu 40.5 2.3E+02 0.005 24.1 16.5 19 175-193 193-211 (422)
479 PF02847 MA3: MA3 domain; Int 40.4 1.1E+02 0.0024 20.4 9.2 23 169-191 6-28 (113)
480 cd08326 CARD_CASP9 Caspase act 40.1 98 0.0021 19.7 6.6 61 5-79 20-80 (84)
481 KOG2297 Predicted translation 40.0 2.2E+02 0.0047 23.6 18.2 74 212-290 267-341 (412)
482 PF14669 Asp_Glu_race_2: Putat 39.9 1.7E+02 0.0036 22.3 16.6 182 13-224 2-205 (233)
483 COG4976 Predicted methyltransf 39.5 73 0.0016 25.0 4.4 55 245-300 5-59 (287)
484 PF01475 FUR: Ferric uptake re 39.3 94 0.002 21.2 4.8 45 136-180 13-57 (120)
485 COG4715 Uncharacterized conser 39.0 3E+02 0.0066 25.0 19.1 241 96-368 304-549 (587)
486 KOG3677 RNA polymerase I-assoc 38.9 2.7E+02 0.0057 24.3 8.8 59 64-122 239-299 (525)
487 PF07378 FlbT: Flagellar prote 38.8 1.3E+02 0.0028 21.0 5.2 18 349-366 100-117 (126)
488 COG5159 RPN6 26S proteasome re 38.8 2.2E+02 0.0048 23.4 22.6 200 24-229 8-235 (421)
489 PF04348 LppC: LppC putative l 38.6 10 0.00022 34.1 0.0 86 242-327 31-120 (536)
490 PF11838 ERAP1_C: ERAP1-like C 38.1 2.3E+02 0.0051 23.5 19.6 30 269-298 200-229 (324)
491 KOG4567 GTPase-activating prot 37.8 2.4E+02 0.0052 23.5 10.2 57 220-281 263-319 (370)
492 PF07064 RIC1: RIC1; InterPro 37.6 2.2E+02 0.0047 23.0 16.6 26 22-47 85-110 (258)
493 PRK09857 putative transposase; 37.5 2.4E+02 0.0051 23.3 9.2 54 246-300 217-270 (292)
494 PF11768 DUF3312: Protein of u 37.0 3.3E+02 0.0071 24.8 12.1 61 169-229 412-473 (545)
495 PF07678 A2M_comp: A-macroglob 36.9 2.2E+02 0.0047 22.7 9.0 29 94-122 131-159 (246)
496 PHA02537 M terminase endonucle 36.6 1.1E+02 0.0024 24.0 5.2 106 257-367 70-175 (230)
497 PF10475 DUF2450: Protein of u 36.2 2.5E+02 0.0053 23.2 10.0 120 66-191 104-223 (291)
498 PF00244 14-3-3: 14-3-3 protei 36.1 2.2E+02 0.0048 22.6 12.5 58 135-192 6-64 (236)
499 COG4976 Predicted methyltransf 35.8 1E+02 0.0022 24.3 4.7 54 29-89 5-58 (287)
500 cd08790 DED_DEDD Death Effecto 35.1 81 0.0017 20.7 3.5 17 33-49 38-54 (97)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-61 Score=432.52 Aligned_cols=346 Identities=25% Similarity=0.405 Sum_probs=339.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
||..+|+.++.+|++.|+++.|.++|+.|.+.+ +.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 788999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCccHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ--IGVRPNAFVYNTLMDG 174 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 174 (369)
+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5789999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (369)
|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 335 VLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|+.||..+|+.++.+|.+.|++++|.+++++|.+
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-59 Score=425.23 Aligned_cols=363 Identities=18% Similarity=0.304 Sum_probs=349.3
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.+ +.||..+|+.+|.+|++.|++++|.
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 4689999999999999999999999999999999999999999999988 7899999999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD--QGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.|++|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----c-------------------CchHHHHHHHHHhhcC
Q 036461 319 GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----D-------------------GKMDKARDLFLDMEAK 369 (369)
Q Consensus 319 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 369 (369)
|+++.|.+++++|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|.++
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999876542 1 2246789999999863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-54 Score=390.38 Aligned_cols=348 Identities=22% Similarity=0.334 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHcC-CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 2 EAAALFMKLRVFG-CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
+|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.+ +.||..+|+.++..|++.|+++.|.
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHHH
Confidence 5777888887654 56777888888888888888888888888887777 6777777888888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|..+.+.+++..+.+.|
T Consensus 179 ~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 179 RLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 88877753 57777888888888878888888888877777777777766666666666666666666666666666
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 66666666666666666666666666666554 24555666666666666666666666666666666666666666
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence 666666666666666666666665555555555555555555555555555555554 3455555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 321 LKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|++|.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.8e-54 Score=384.31 Aligned_cols=348 Identities=20% Similarity=0.324 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
.|.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|++
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCeeeHHHHHHHHHHCcCHHHHHH
Confidence 5788999999999999999999999999999999999999998853 788999999999999999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------------------------------
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV------------------------------- 130 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------- 130 (369)
+|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|..||.
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~ 290 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT 290 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh
Confidence 9999988887777766655555555544444444444444444444444
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY 210 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (369)
.+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|++++..+++.++.+|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.
T Consensus 371 ~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 555555555555554432 3444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 291 ELFRTLRI-LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 291 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
++|+.|.+ .++.|+..+|+.++.+|++.|++++|.++++++. +.|+..+|+.++.+|...|+++.|..+++++
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 55555543 3445555555555555555555555555554442 3445555555555555555555555555444
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-53 Score=390.29 Aligned_cols=280 Identities=20% Similarity=0.319 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+++|++|.+.|+.||..+|+.++.+|+..+++..+.+++..+.+.+ +.||..+++.|+.+|++.|+++.|.+
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHH
Confidence 577777777777777777777666666666665555555555555555 45566666666666666666666666
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+|++|.. ||..+|+.++.+|++.|++++|+.+|++|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|.
T Consensus 244 lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 244 VFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 6666643 355666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 6666666666666666666666666666554 245555566666666666666666666655555555555555555
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRT 295 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (369)
+.+|.+.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555555555555555555444444444444444444444444444433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-53 Score=386.99 Aligned_cols=352 Identities=19% Similarity=0.313 Sum_probs=299.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.+ +.||..+|+.|+.+|++.|++++|.
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHH
Confidence 3688889999888889999999999999999999999999999988888 7889999999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|
T Consensus 344 ~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99998864 58888999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..||+.
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 999999999999999999999999999988863 5677888888888888888888888888875 47788887777
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCC------------------------------CcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGV------------------------------AADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++.+|.+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|++.|+.++|.
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 77666666666666555555554443 456777888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc-cCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP-RGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888 67888888888888888888888888888888873
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=8.5e-28 Score=225.80 Aligned_cols=348 Identities=13% Similarity=0.049 Sum_probs=211.1
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
|+.+|+++.+.+ +.+...+..++..+.+.|++++|+.+++.+.... +.+...|..++.++...|++++|+..
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344433332 2333344444444444444444444444444332 33344455555555555555555555
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
|+++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +
T Consensus 624 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 55554432 2234444455555555555555555555554432 2234445555555555555555555555555443 3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
.+...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|++++|...+.++.+..+ .+...+..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344555555566666666666666666665543 3334555566666666666666666666666532 3556666677
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..+...|++++|..+|+++.+.. +.++..+..++..+...|+ .+|+..++++.... +.++..+..++..+...|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777654 3466677777777777777 66777777777654 445667777888888999999
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+|...|+++.+.+.. +..++..++.++.+.|++++|++++++|.+
T Consensus 855 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 855 RALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999887544 888899999999999999999999998864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.2e-27 Score=219.53 Aligned_cols=349 Identities=15% Similarity=0.104 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|++.|+++.+.+ +.+..++..+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 3445555554443 3344455555555555555555555555555443 3344555555666666666666666
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+++.+.+. .+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+..
T Consensus 589 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 66665543 23455566666666666666666666666665543 2244455566666666666666666666666543
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
+.+..++..++..+...|++++|.++++.+.... +.+...+..+...+...|++++|...|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 3345566666666666666666666666666554 4455566666677777777777777777777653 333556667
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
+.++...|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..+++.++..+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 777777777777777777776653 4466677777777777888888888888777665 5567777777777777777
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
++|+..++++.... +-++.++..+..++.+.|++++|.++|+++.+
T Consensus 820 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 820 PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66777777776642 22556677777888888888888888888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=6e-25 Score=186.31 Aligned_cols=306 Identities=14% Similarity=0.095 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYN 99 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 99 (369)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 334455678899999999999999876 45677889999999999999999999999887532221 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGF 175 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 175 (369)
.++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 88889999999999999999998753 44677888899999999999999999999887653322 22345677778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..+++++...+......++..++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999988764 44566777888889999999999999999987644333456788888999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHhcc
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK---SGRLKIAWELFRSLP 332 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 332 (369)
..++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999998875 356666688888899999999999999988876 5777788877777664 558889999999888
Q ss_pred cCCcccCHH
Q 036461 333 RGVLIADVV 341 (369)
Q Consensus 333 ~~~~~~~~~ 341 (369)
+.++.|++.
T Consensus 346 ~~~~~~~p~ 354 (389)
T PRK11788 346 GEQLKRKPR 354 (389)
T ss_pred HHHHhCCCC
Confidence 776666654
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=5.3e-23 Score=183.16 Aligned_cols=353 Identities=15% Similarity=0.034 Sum_probs=277.5
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+..|++.++. .|++..|..+..++.+.|++++|+..++...+.+ |.+...|..+..++...|++++|+
T Consensus 144 ~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 144 NKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3689999998875 5788899999999999999999999999999876 556889999999999999999998
Q ss_pred HHHHHhHhCCC-----------------------------CCCHHhHHHH------------------------------
Q 036461 81 ELFLKMKDENI-----------------------------NPNVVTYNSL------------------------------ 101 (369)
Q Consensus 81 ~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------------------ 101 (369)
..|..+...+. +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76654432110 0010000000
Q ss_pred HHHH------HhcCCHHHHHHHHHHHHhcC-C-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 102 IHGF------CYANDWNEAKCLFIEMMDQG-V-QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 102 ~~~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
+... ...+++++|...|++....+ . +.....+..+...+...|++++|+..++..++.. +.....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999998764 1 2244567888888899999999999999999874 335678888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
++...|++++|...|+.+.... +.+..++..+...+...|++++|...|++.++..+. +...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 566888999999999999999999999999987533 56677888899999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHcCCCHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR------AYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~ 327 (369)
|+..++...+.. +.+...+..+...+...|++++|+..|++........+.. .++..+..+...|++++|..+
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998763 4467889999999999999999999999998764221111 122222334457999999999
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+++..... +.+...+..+..++.+.|++++|+++|++..
T Consensus 531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99988764 2345678899999999999999999998864
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=8.6e-24 Score=179.26 Aligned_cols=301 Identities=14% Similarity=0.087 Sum_probs=249.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN---VVSFNVIM 137 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 137 (369)
.........+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 333444556678899999999999999873 44677899999999999999999999999987532221 24677889
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch----HHHHHHHHHHHhhc
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN----VFSYSILINGYCKN 213 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 213 (369)
..+...|++++|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998864 45678899999999999999999999999987642221 22456677788899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|...++++.+... .+...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998643 2456778888999999999999999999987643333466788999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh---cCchHHHHHHHHHhhc
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA---DGKMDKARDLFLDMEA 368 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 368 (369)
+++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+
T Consensus 273 ~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 273 RRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999876 466667788999999999999999999999875 6888888888877764 5689999999998875
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=9.3e-23 Score=181.09 Aligned_cols=332 Identities=14% Similarity=0.059 Sum_probs=274.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
-...++..+.+.|++++|..+++...... +.+...+..++.+....|+++.|+..++++.... |.+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35567788899999999999999999876 5567788888888889999999999999998863 447788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999998863 335678888999999999999999999988776433 33344333 34788999
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH----HHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER----AFK 256 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 256 (369)
+++|...++.+......++...+..+...+...|++++|...++++...++. +...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999877643344445556677888999999999999999987543 67778889999999999985 899
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...|+++...
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 999998864 3467788999999999999999999999999875 556778888999999999999999999999875
Q ss_pred ccCH-HHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 337 IADV-VTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 337 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|+. ..+..+..++...|++++|++.|++..+
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3443 3344457788999999999999998754
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=2.5e-22 Score=178.35 Aligned_cols=319 Identities=12% Similarity=0.038 Sum_probs=266.0
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+.+++...... +-+..++..++.++...|++++|+..|+++.... |.+...+..+...+...|++++|+
T Consensus 59 ~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 59 DVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred chhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHH
Confidence 46888888888874 5667778888888889999999999999999987 567888999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..++++... .+.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999886 2446788889999999999999999999988766433 33344333 45788999999999999988775
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH----HHHHHHHHHhCCCCCcHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG----ALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~ 236 (369)
..++......+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.+..+. +..
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~ 285 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVR 285 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHH
Confidence 44445555666788899999999999999999875 5677888889999999999986 89999999987543 677
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+..++.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~ 363 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 88999999999999999999999999864 3456778888999999999999999999998764 333344555677899
Q ss_pred cCCCHHHHHHHHHhcccC
Q 036461 317 KSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~ 334 (369)
..|++++|...|+++.+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998775
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.3e-21 Score=185.37 Aligned_cols=355 Identities=12% Similarity=0.064 Sum_probs=229.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhH------------HHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY------------TTIID 68 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~ 68 (369)
++|+..|++.++.. |.+..++..+..++.+.|++++|+..|++..+..+. .++...| .....
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-----~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-----SSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ccchhHHHHHHHhhhHHHHHHHHH
Confidence 47899999999875 568889999999999999999999999999986621 1111112 22345
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----------
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM----------- 137 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------- 137 (369)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+... .+...+..+.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHH
Confidence 6778999999999999998863 44677888899999999999999999999987632 2333333332
Q ss_pred -------------------------------HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 036461 138 -------------------------------NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEE 186 (369)
Q Consensus 138 -------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (369)
..+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445677777777777777664 3355666677777788888888888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC------------------------------------
Q 036461 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG------------------------------------ 230 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------ 230 (369)
.++++.... +.+...+..+...+...++.++|+..++.+....
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 887776543 3333333333333344444444444444322110
Q ss_pred ---CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 036461 231 ---IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRA 307 (369)
Q Consensus 231 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (369)
.+.+...+..+...+...|++++|+..++.+.+.. +.+...+..++..+...|++++|+..++.+.... +.+...
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~ 673 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNT 673 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHH
Confidence 12233344555666666666777777766666653 3355666666666666777777777776665442 334455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCcc--c---CHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPRGVLI--A---DVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+..+..++...|++++|.++++++...... | +...+..+...+...|++++|++.|++..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555666666677777777777666553211 1 12344455666666777777777666543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-22 Score=166.45 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
++|..+...+...|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 344444444444455555555554444433 22344444444444444444444444444443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2.2e-20 Score=169.56 Aligned_cols=355 Identities=12% Similarity=0.007 Sum_probs=266.4
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+++|.+..... +.+...+..+...+.+.|++++|..+|+++.... |.+...+..++.++...|++++|+
T Consensus 32 ~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 32 AEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36788888887643 5566678999999999999999999999988876 566778888888999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHH-------
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLL------- 153 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------- 153 (369)
..++++.+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..+.|+..+
T Consensus 104 ~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 104 VKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 999999876 344666 888888999999999999999999886432 4555555666666556655444333
Q ss_pred ---------------------------------------HHHHHc-CCCccHH-HH----HHHHHHHHhcCChHHHHHHH
Q 036461 154 ---------------------------------------ELMIQI-GVRPNAF-VY----NTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 154 ---------------------------------------~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~ 188 (369)
+.+.+. ...|+.. .+ ...+..+...|++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333322 1112111 11 11133456779999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
+.+.+.+.+........+..+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+..
T Consensus 261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 999877522111222335778999999999999999988754221 13456667778899999999999999988753
Q ss_pred C-----------CcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 036461 266 V-----------AAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSL 331 (369)
Q Consensus 266 ~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 331 (369)
. .|+ ...+..+...+...|++++|+..++++.... |.+...+..++..+...|++++|+..++++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 123 2345667788899999999999999998775 667889999999999999999999999999
Q ss_pred ccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 332 PRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.... +.+...+..++..+...|++++|..+++++.+
T Consensus 420 l~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 420 EVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8863 23466777888889999999999999998875
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.1e-20 Score=166.64 Aligned_cols=334 Identities=15% Similarity=0.038 Sum_probs=261.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+......+.+.|++++|+..|++..... |++..|..+..+|.+.|++++|++.++...+.. +.+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 35567788999999999999999999854 778899999999999999999999999999863 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-----------------------------CCChhhHHHHHHH------------
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGV-----------------------------QPNVVSFNVIMNE------------ 139 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~------------ 139 (369)
+..+|...|++++|+..|..+...+. +++...+..+...
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432110 0111111111000
Q ss_pred ------------------H------HhCCChhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 140 ------------------L------CKNGKMDEASRLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 140 ------------------~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
. ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..+++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11256888999999988764 233456788888899999999999999999988
Q ss_pred cCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHH
Q 036461 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (369)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (369)
.. +.....|..+...+...|++++|...|+++.+..+. +..++..+...+...|++++|...|+..++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 74 445678888999999999999999999999887533 67788999999999999999999999999874 3467778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-----H-HHHHHH
Q 036461 274 RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-----V-TYNIMI 347 (369)
Q Consensus 274 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~-~~~~l~ 347 (369)
..+..++.+.|++++|+..+++..... +.+...++.+...+...|++++|...|++........+. . .+...+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888999999999999999999998764 557889999999999999999999999998775322111 1 122222
Q ss_pred HHHHhcCchHHHHHHHHHhh
Q 036461 348 HALCADGKMDKARDLFLDME 367 (369)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~m~ 367 (369)
..+...|++++|.+++++..
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 33445799999999998864
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.7e-22 Score=163.41 Aligned_cols=349 Identities=15% Similarity=0.092 Sum_probs=289.4
Q ss_pred ChHHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHH
Q 036461 1 MEAAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDK 78 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 78 (369)
++|+..++.+++. .|+-. +|..+..++...|+.+.|.+.|....+.+ |+ .-....+...+-..|+.++
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhcccch
Confidence 3688889998875 67776 79999999999999999999999999865 54 3444556666667899999
Q ss_pred HHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 79 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
|...|.+.++.. +-=...|..|...+..+|+.-.|++.|++.....+. -...|..+...|...+.++.|...|.+...
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999999988752 224567889999999999999999999999876422 356788899999999999999999998887
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.. +.....+..+...|...|..+-|+..+++..+.. +.-+..|+.+..++-..|++.+|.+.|.+.+..... .....
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 64 3456778888888999999999999999998875 556788999999999999999999999999987433 55678
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
+.|...+...|.++.|..+|....+-. +--....+.+...|-+.|++++|+..|++.++.. +.-...++.+...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHh
Confidence 899999999999999999999988742 2235578889999999999999999999998764 33457889999999999
Q ss_pred CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 319 GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 319 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.+.|.+.+.+++..+.. =...++.|...|..+|+..+|++-+++..
T Consensus 436 g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 9999999999999885322 35688899999999999999999988754
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.3e-20 Score=178.61 Aligned_cols=316 Identities=11% Similarity=0.035 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++.++.. |.+..++..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|+
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-------p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-------PGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH-hcCHHHHH
Confidence 36888999998875 5677788889999999999999999999999876 344555555555543 23455555
Q ss_pred HHHHHhHhCCCC--------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 81 ELFLKMKDENIN--------PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 81 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.+++.+...... .....+..+...+...|++++|+..|++.++..+ -+...+..+...+...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555443221000 0011233344445555555555555555554421 1334444455555555555555555
Q ss_pred HHHHHHcCCCccHHHHH--------------------------------------------HHHHHHHhcCChHHHHHHH
Q 036461 153 LELMIQIGVRPNAFVYN--------------------------------------------TLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~a~~~~ 188 (369)
++.+.+.. +.+...+. .+...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 55554432 11222222 2234455566666666665
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (369)
+. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|...++.+.+.. +.
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-ND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CC
Confidence 51 2456667778889999999999999999999997543 67888999999999999999999999888753 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE--L---DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+......+..++...|++++|.++++.+...... | +...+..+...+...|++++|...|++....
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888999999999999999999875322 1 2246666788899999999999999998753
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2e-18 Score=156.83 Aligned_cols=350 Identities=11% Similarity=0.021 Sum_probs=258.9
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 83 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (369)
+..++. .+.+ +.++....-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.++|
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666 3333 5667777778888999999999999999998744 455667999999999999999999999
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
++..+. -|.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.
T Consensus 73 ~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 73 QKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 999876 34567788889999999999999999999998873 33555 8888899999999999999999999875 33
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHH----------------------------------------------HHHhc-CC
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFV----------------------------------------------SMESM-GC 196 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------------~~~~~-~~ 196 (369)
+...+..+..++...+..++|+..++ .+.+. ..
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 55565666667766666665554444 33221 00
Q ss_pred CchH-HHH----HHHHHHHhhcCChHHHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc--
Q 036461 197 KHNV-FSY----SILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-- 268 (369)
Q Consensus 197 ~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 268 (369)
.|+. ..+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..++...|++++|...++.+.+.....
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 1111 111 11123445678899999999998887532 332 22235678888999999999999887643211
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 269 -DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----------ELD---IRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 269 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.......+..++...|++++|...++.+..... .|+ ...+..++..+...|++++|+..++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134566677778899999999999998886531 122 23456677788899999999999999887
Q ss_pred CCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 334 GVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.. +.+...+..++..+...|++++|++.+++..+
T Consensus 388 ~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 388 NA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 63 44677888889999999999999999988654
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.2e-17 Score=149.46 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=132.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-----CCcHHhHHHHHHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-----KPDVVIYNTLFIGLF 246 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 246 (369)
+-++...|++.++++.++.+...+.+....+-..+..+|...+.+++|..+++.+..... .++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 335556677777777777777666554556667777888888888888888888766431 223333466777788
Q ss_pred hcccHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 247 EIHQVERAFKLFDEMQRHGV-----------AAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
..+++++|..+++.+.+... .|+ ......++..+...|++.+|.+.++.+.... |-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88888888888888776311 122 1233445666777888888888888887665 66777888888
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 313 DGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+++.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888888888886665542 2245566677777778888888877776554
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2.5e-16 Score=143.90 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=254.0
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC---hHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF---VDK 78 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 78 (369)
+|.+.+..|.+.. +-+......+.-...+.|+.++|.++|+........ ...+......++..|.+.+. ..+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----ARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----cccCHHHHHHHHHHHHhCCcccchHH
Confidence 4556666676652 457778888888889999999999999998873211 12344455577888877765 333
Q ss_pred HHHH----------------------HHHhHhC-C-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 036461 79 AKEL----------------------FLKMKDE-N-INP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS 132 (369)
Q Consensus 79 a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (369)
+..+ ++..... + .++ +...|..+..++.. +++++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3333 1111111 1 234 66777888877776 7888899988887765 355444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
...+...+...|++++|...++.+... +|+...+..+..++.+.|++++|...+++..+.. +.....+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444555567899999999999987664 3444556677788889999999999999998765 3344444444445556
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 699999999999998864 467788888999999999999999999998874 44677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC-HHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD-VVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
++++.+.. |.+...+..+..++...|++++|...|++..+. .|+ ..+.........+..+++.|.+-+++
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99998875 567888899999999999999999999999875 343 34555566666777777777776654
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=2.3e-16 Score=135.50 Aligned_cols=356 Identities=16% Similarity=0.118 Sum_probs=233.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.+++.++++.. |.+..+|.+|...|-+.|+.+++...+-.+...+ |.|...|..+.....+.|++++|.
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcccHHHHH
Confidence 36777777777775 6677778888888888888888777766666655 556677777777777788888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh----HHHHHHHHHhCCChhHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS----FNVIMNELCKNGKMDEASRLLELM 156 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~ 156 (369)
-.|.++++.. |++...+-.-...|-+.|+...|...|.++....++.|..- -..++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888877763 44555555666777777888888888877776643222222 223345556666667777777766
Q ss_pred HHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------------------------CCchHHHHHHHHH
Q 036461 157 IQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---------------------------CKHNVFSYSILIN 208 (369)
Q Consensus 157 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~ 208 (369)
...+ -..+...++.++..+.+...++.+........... ..++..+ ..++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 6521 12344556677777777777777777766655411 1122222 12233
Q ss_pred HHhhcCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKG--IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
++.+....+....+........ +.-+...|.-+..++...|.+.+|..++..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3444444444444555555544 33345567777888888888888888888887765445566778888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC--------CcccCHHHHHHHHHHHHhcCchHH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG--------VLIADVVTYNIMIHALCADGKMDK 358 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~ 358 (369)
++|.+.|+.++... |.+..+--.|...+.+.|+.++|.+++..+... +..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 88888888887765 556667777777788888888888888875432 234455555566667777788777
Q ss_pred HHHHHHHhh
Q 036461 359 ARDLFLDME 367 (369)
Q Consensus 359 A~~~~~~m~ 367 (369)
-+...-.|.
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 655554443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=8.5e-16 Score=140.53 Aligned_cols=321 Identities=13% Similarity=0.013 Sum_probs=246.4
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhc
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 108 (369)
..+...++...+..+.+.. +-+......+.....+.|+.++|.++|+..... +..++......++..|.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 3466777777777777764 456777777778888999999999999998762 1223444555778888777
Q ss_pred CC---HHHHHHH----------------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 109 ND---WNEAKCL----------------------FIEMMDQ-GV-QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 109 ~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
+. ..++..+ ++..... +. ++ +...|..+..++.. ++..+|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3333333 1122111 11 33 56677777777776 8899999988888776
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 160 GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
. |+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.++. +...+.
T Consensus 506 ~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~ 580 (987)
T PRK09782 506 Q--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYW 580 (987)
T ss_pred C--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHH
Confidence 3 55544444556667899999999999998765 455555667788899999999999999999987522 333444
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+.......|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..... |.+...++.+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 44445556699999999999999864 578889999999999999999999999999886 667888999999999999
Q ss_pred CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 320 RLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
++++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999998863 33678899999999999999999999998754
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.1e-15 Score=137.00 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+..|++..+.. |.++.....++..+...|+.++|+..+++..... +........++..+...|++++|++
T Consensus 52 ~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 52 PVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-------NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6888899998863 3332233388888889999999999999988422 2334444445678888999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
+|+++.+.. |.++..+..++..+...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 999998874 346777778888999999999999999999876 4555555445445545666666999999999885
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHH------------------------------------------------h
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSME------------------------------------------------S 193 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------------------------------~ 193 (369)
+.+...+..+..++.+.|-...|.++..+-. .
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4466676777777776666555555443221 1
Q ss_pred c-C-CCchHH----HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--
Q 036461 194 M-G-CKHNVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-- 265 (369)
Q Consensus 194 ~-~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 265 (369)
. + .++... +..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 0 0 011111 1122344566778888899999988887755445577788889999999999999999886643
Q ss_pred ---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHcCCCHHHHHHHH
Q 036461 266 ---VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----------ELDI---RAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 266 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+++......|..++...+++++|..+++.+.+... .||. .....++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122344456788888999999999999998886311 1221 23344567788889999999999
Q ss_pred HhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 329 RSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+++.... +-|......+...+...|.+.+|.+.++..
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9987753 448888888889999999999999988654
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.1e-15 Score=120.96 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC--Chh-HHHHHHHHHHcCCCCCCc-------------ccccchhhHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTG--HTI-VALNLFEEMANGNGEFGV-------------VCKPNTVTYTT 65 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~-~A~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 65 (369)
++.-+|+.|+..|++.++..-..|++.-+-.+ ++. .-++.|-.|...+...+. ..|.+..++..
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 57779999999999999998888777544332 222 223344444444432222 13556789999
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK 145 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (369)
+|.++++--..+.|.++|++......+.+..+||.+|.+-.-.. -.+++.+|.+..+.||..|+|.++++..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 99999999999999999999988878889999999987654332 27889999999999999999999999999998
Q ss_pred hhH----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----cCC----CchHHHHHHHHHHHhh
Q 036461 146 MDE----ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR-AEELFVSMES----MGC----KHNVFSYSILINGYCK 212 (369)
Q Consensus 146 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~ 212 (369)
++. |.+++.+|.+.|+.|...+|..+|..+.+-++..+ +..++.++.. ..+ +.+...|...+..|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 764 56788899999999999999999999888888644 4444444432 211 2344456666677777
Q ss_pred cCChHHHHHHHHHHHhCC----CCCc---HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 213 NKEIEGALSLYSEMLSKG----IKPD---VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
..+.+-|..+..-+.... +.|+ ..-|..+....++....+....+|+.|+-.-.-|+..+...++++..-.|.
T Consensus 369 l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 369 LRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred hhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 777777766655444321 1222 122344445555555566666666666554445555565666666655666
Q ss_pred HHHHHHHHHHHHHcC
Q 036461 286 IVEAVELFRTLRILK 300 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~ 300 (369)
++-..++|..++..|
T Consensus 449 ~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYG 463 (625)
T ss_pred chhHHHHHHHHHHhh
Confidence 665555555554443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=8.5e-16 Score=121.65 Aligned_cols=341 Identities=16% Similarity=0.225 Sum_probs=258.9
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.|.++.++..+|.++++--..+.|.+++++..... .+.+..+||.+|.+-.-.. ..++..+|....+.||
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPN 272 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCc
Confidence 36788899999999999999999999999988877 6889999999998765332 3788999999889999
Q ss_pred HHhHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHHc----C----C
Q 036461 95 VVTYNSLIHGFCYANDWNEA----KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE-ASRLLELMIQI----G----V 161 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~----~ 161 (369)
..|+|.++.+..+.|+++.| .+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++.++... . .
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 99999999999999987764 5677888999999999999999999998887644 55555555432 1 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----CKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
+.+...|...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++....+.....|+.|+.+-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2345567778889999999999998877665331 2233 23356677777888889999999999999888889
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-C--------HHH-----HHHHH-------
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-Y--------IVE-----AVELF------- 293 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----a~~~~------- 293 (369)
..+...++++....+.++-.-++|.+++..|...+......++..+++.. . +.. |..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999988775555555555555555443 1 111 11111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC----cccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV----LIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.++. .........+.++-.+.+.|+.++|.++|..+.+++ ..|......-++..-.+.++...|+.+++-|.
T Consensus 513 ~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 513 IRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1122 224566778888888999999999999999885543 22333444456667778889999988887653
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=6.1e-16 Score=132.98 Aligned_cols=335 Identities=16% Similarity=0.124 Sum_probs=262.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
........+.-.|+.++|..++.++++.+ |.+...|..|..+|-..|+.+++...+-.+... .|-|...|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ 212 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 33444445556699999999999999987 678999999999999999999999988766654 3447799999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHH----HHHHHHHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAF----VYNTLMDGFC 176 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 176 (369)
+.....+.|.+++|.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.....+.+.. .-...++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999884 4466666677888999999999999999999875433322 2334566777
Q ss_pred hcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---------------------
Q 036461 177 LTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------------- 234 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------- 234 (369)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.+.............+|
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 8888899999998887632 234556678888999999999999988887776222221
Q ss_pred ------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 036461 235 ------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR 306 (369)
Q Consensus 235 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (369)
... -.++.++......+....+.....+.. +.-+...|..+..+|.+.|.+.+|+.++..+.....-.+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 111 134444555666666666666666665 33456789999999999999999999999999775455678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+|..++.+|...|.+++|.+.|+.++... +.+...--+|...+.+.|+.++|.+.++.|
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999999999999999999998862 224556667888899999999999999875
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=5.3e-16 Score=130.53 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=220.8
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhCCChhHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYN-SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFN--VIMNELCKNGKMDEA 149 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 149 (369)
.|+++.|.+.+....+.. +++..+. ....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999999888876642 2333333 3345558899999999999999875 44543332 346788899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhhcCChHHHHHH
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 457888899999999999999999999999987644322 1233334444445566666777
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
++.+.+. .+.++.....+...+...|+.++|..++++..+. +|++.... +.+....++.+++....+...+.. |
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7766543 3447778889999999999999999999999884 45654332 333345699999999999998775 6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.|+..+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67788899999999999999999999999985 789999999999999999999999999875
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=5e-16 Score=131.39 Aligned_cols=290 Identities=12% Similarity=0.039 Sum_probs=215.9
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPN-VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA 149 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (369)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999988775 344 3444555688888999999999999987653222222334457888999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH---hhcCChHHHHHHHHHH
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY---CKNKEIEGALSLYSEM 226 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 226 (369)
...++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.+..++......-..++ ...+..+++...+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 4477888899999999999999999999999886433332211111222 3333333344455555
Q ss_pred HhCCC---CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 227 LSKGI---KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWA---YRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 227 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.+..+ +.+...+..+...+...|+.++|...+++..+.. |+... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 54422 1377888889999999999999999999999864 33321 1112222344578899999998888764
Q ss_pred CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 301 YELDI--RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 301 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+.|+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566 6778999999999999999999995444334789998999999999999999999999875
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=3.5e-19 Score=143.34 Aligned_cols=261 Identities=18% Similarity=0.159 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666667777777777775543332 1234444555555666667777777777777665422 44455555555 566
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
+++++|.+++....+.. +++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777666555432 344555566666667777777777776655322 234555666666666667777777777
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
+++.++..+. |......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..... +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7776665322 45556666666666666666666666655542 3344455666666666677777777776666554 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.|+.....++.++...|+.++|..+.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 466666666666666777776666665554
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=1e-15 Score=128.76 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=222.4
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHH-HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH--HHHHHHHhc
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTT-IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN--SLIHGFCYA 108 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 108 (369)
.|+++.|.+.+....+.. +++..+.. ......+.|+++.|.+.+.++.+. .|+..... .....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--------EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC
Confidence 599999998888866643 23333333 355558899999999999999875 45554333 346788999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCh
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRV 181 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~ 181 (369)
|+++.|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999875 336778889999999999999999999999988654322 1333344444455566
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
+...++++.+...- +.++.....+...+...|+.++|...+++..+. .|+.... ++.+....++++++.+..+..
T Consensus 246 ~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 77777777775442 567888889999999999999999999999885 4454322 333444569999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 262 QRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.+.. +-|+..+..+...|.+.+++++|...|+.+.+. .|+...+..+...+.+.|+.++|..++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8874 457778889999999999999999999999976 68999999999999999999999999998754
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=3.8e-19 Score=143.19 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQG-VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56888899999999999997665543 2335556666777778889999999999999987633 66677777777 789
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcccHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVVIYNTLFIGLFEIHQVERAFKL 257 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (369)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887655 3566778888899999999999999999987643 345777888999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc
Q 036461 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI 337 (369)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 337 (369)
+++..+.. |.|......++..+...|+.+++..+++...... +.++..+..+..+|...|++++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99999874 3367888899999999999999999999888765 6677888999999999999999999999998753 3
Q ss_pred cCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 338 ADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|+.+...+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888889999999999999999999887654
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=1.1e-15 Score=129.26 Aligned_cols=298 Identities=12% Similarity=0.080 Sum_probs=218.0
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH--Hh
Q 036461 23 NTLINGL--CRTGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV--VT 97 (369)
Q Consensus 23 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 97 (369)
..+.+++ ...|+++.|.+.+.+..+.. |++ ..+.....+....|+++.|.+.+.+..+.. |+. ..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~ 155 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILV 155 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHH
Confidence 3344433 45799999999999887754 443 444556788888999999999999987653 343 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH--
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF-- 175 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 175 (369)
.......+...|+++.|...++.+.+..+ -+...+..+...+...|+++++.+.+..+.+.+..+..........++
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44457888899999999999999998853 366788899999999999999999999999987543332211111221
Q ss_pred -HhcCChHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH-HHHHHHHHhccc
Q 036461 176 -CLTGRVNRAEELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY-NTLFIGLFEIHQ 250 (369)
Q Consensus 176 -~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 250 (369)
...+..+++.+.+..+.... .+.++..+..+...+...|+.++|...+++..+..+......+ ..........++
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 22333333344554444332 1237788889999999999999999999999997443221111 112222234577
Q ss_pred HHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADT--WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+.+.+.++...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|
T Consensus 315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999998888753 3355 6777899999999999999999996544444789888999999999999999999999
Q ss_pred Hhcc
Q 036461 329 RSLP 332 (369)
Q Consensus 329 ~~~~ 332 (369)
++..
T Consensus 394 ~~~l 397 (409)
T TIGR00540 394 QDSL 397 (409)
T ss_pred HHHH
Confidence 9854
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.5e-16 Score=123.05 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHcCCCcC------HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 2 EAAALFMKLRVFGCEPN------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+|+++|+-.+.. .|+ ....+.+.-.+.+.|+++.|+..|+...... ||..+-..|+-++...|+
T Consensus 255 kaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 255 KAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGD 324 (840)
T ss_pred HHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCc
Confidence 456666555443 222 2244555556778899999999999888754 777766666767777888
Q ss_pred hHHHHHHHHHhHhCCCCCCH------------HhHHH-----HHHHHHhcC--CHHHHHHHHHHHHhcCCCCChh-----
Q 036461 76 VDKAKELFLKMKDENINPNV------------VTYNS-----LIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVV----- 131 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~------------~~~~~-----l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~----- 131 (369)
.++..+.|.+|+.-...+|. ...+. .+.-.-+.+ +-++++-.-.+++.--+.|+-.
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 99999999988764322221 11111 111111111 1111111111111111111100
Q ss_pred --------hH--------HHHHHHHHhCCChhHHHHHHHHHHHcCCCc--------------------------------
Q 036461 132 --------SF--------NVIMNELCKNGKMDEASRLLELMIQIGVRP-------------------------------- 163 (369)
Q Consensus 132 --------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------- 163 (369)
.+ ..-...+.+.|+++.|.+++.-+.+..-+.
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 00 011224555666666665555444332111
Q ss_pred ----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 164 ----NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 164 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
+......-.+.....|++++|.+.+++.......-....| .+.-.+-..|+.++|++.|-++..- ...+..+..
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1111111111223345666666666666544311111122 2223344556666666666555432 112444555
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+...|....++..|++++.+.... ++.|+..+..+...|-+.|+-..|.+.+-.--. -++-+..+...|..-|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhH
Confidence 5566666666666666666555543 445566666666666666666666665443322 12445666666666666666
Q ss_pred CHHHHHHHHHhcccCCcccCHHHHHHHHHHH-HhcCchHHHHHHHHHhh
Q 036461 320 RLKIAWELFRSLPRGVLIADVVTYNIMIHAL-CADGKMDKARDLFLDME 367 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~ 367 (369)
-++.++..|++..- +.|+..-|..++..| .+.|++++|.+++++..
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666666666543 356666666655433 44666666666666543
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.4e-15 Score=131.78 Aligned_cols=333 Identities=15% Similarity=0.113 Sum_probs=191.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----ChHHHHHHHHHhHhCCCCCCHHh
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG----FVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+.-+...+.+.|+++.+...|+.+.+.. |.+..+...|...|...+ ..+.|..++.+.... .+.|...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a 416 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEA 416 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHH
Confidence 3344455555555555555555555543 334445555555554443 334444454444443 2335555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCc------c
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMM----DQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRP------N 164 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~ 164 (369)
|..+...+....-+.. +..|..+. ..+..+.+...|.+.......|++..|...|...... ...+ +
T Consensus 417 ~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 417 WLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 5555555544433332 44444332 2333455666677777777777777777777666544 1111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-CC-----------
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IK----------- 232 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~----------- 232 (369)
..+-..+....-..++++.|.+.|..+.+.. |.-+..|..++......+...+|...+.++...+ ..
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 2222334445555566666666666665542 2223333333322233344445555555444321 11
Q ss_pred -----------------------CcHHhHHHHHHHHHh------------cccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 233 -----------------------PDVVIYNTLFIGLFE------------IHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 233 -----------------------~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
+|..+...|...|.. .+..++|+++|..+++.. +.|...-+.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchh
Confidence 233333334443321 234677888888887764 45777777888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC-cccCHHHHHHHHHHHHhcCch
Q 036461 278 DGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV-LIADVVTYNIMIHALCADGKM 356 (369)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 356 (369)
.+++..|++.+|..+|.+..+.. .....+|-.++.+|..+|++..|++.|+...+.- ...++.+...|.+++.+.|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 88888888888888888888764 3456788888888888888888888888776532 334677888888888888888
Q ss_pred HHHHHHHHHh
Q 036461 357 DKARDLFLDM 366 (369)
Q Consensus 357 ~~A~~~~~~m 366 (369)
.+|.+.+...
T Consensus 733 ~eak~~ll~a 742 (1018)
T KOG2002|consen 733 QEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHH
Confidence 8888876554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-14 Score=114.15 Aligned_cols=335 Identities=12% Similarity=0.067 Sum_probs=226.3
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHH---------------------------
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTII--------------------------- 67 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------- 67 (369)
...|...+....-.+.+.|....|++.|.......+ -.-.+|..|.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-------~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-------WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-------cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHH
Confidence 345555555555567778888899998888776542 2222222222
Q ss_pred --HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhC
Q 036461 68 --DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNELCKN 143 (369)
Q Consensus 68 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 143 (369)
.++....+.+++++-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 233333455566666666666666555544444555556667777777777777765211 134455444332211
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
+. +..-+-+.....+ +-.+.|+..+.+-|.-.++.++|...|++..+.+ +....+|+.+..-|....+...|+.-+
T Consensus 312 -~s-kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 -KS-KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred -hH-HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 1111111111111 2344566677778888888999999999998886 566778888888899999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL 303 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 303 (369)
+.+++-++. |...|-.|.++|...+.+.=|+-.|++..... +.|+..|..++.+|.+.++.++|+..|.+....+ ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 999987544 88888999999999999999999999888863 4578899999999999999999999999988876 55
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-ccc-CHHHHHHHHHHHHhcCchHHHHHHHH
Q 036461 304 DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-LIA-DVVTYNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 304 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
+...+..|+..|-+.++.++|...|++.++. | +.| ......-|..-+.+.+++++|..+..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7788899999999999999998888776541 2 222 12233335566777888888766443
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.3e-15 Score=127.43 Aligned_cols=284 Identities=17% Similarity=0.134 Sum_probs=187.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhC---CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE---NINPNV------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (369)
+...|.+...+...|+++.|...|...... ...++. .+-..+..+.-..++.+.|.+.|..+.... +.-.
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhH
Confidence 445555555555555555555555554432 011111 122223344444455555555555555441 1122
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILING 209 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 209 (369)
..|..++......+...+|...+....... ..++..+..+...+.+...+..|.+-|..+.+.. ..+|..+...|...
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 233333322233455666666666666543 3456666667777777777777777766665432 13566666677776
Q ss_pred Hhh------------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 210 YCK------------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 210 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
|.+ .+..++|+.+|.++++..+. |...-+.+...++..|++..|..+|..+.+... -...+|..+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 653 24578899999999987544 777788899999999999999999999998743 3556889999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHH
Q 036461 278 DGLCKNGYIVEAVELFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMI 347 (369)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (369)
.+|...|++..|+++|+...+. ....++.+...|.+++...|.+.+|.+.+.......+.-....||..+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999987654 445688899999999999999999999998888764443445555444
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.1e-14 Score=111.14 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=226.1
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhCCCh
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV------SFNVIMNELCKNGKM 146 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 146 (369)
.++.++|.++|-+|.+.. +.+..+..+|.+.|-+.|..+.|+++.+.+..+ ||.. ....+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 478999999999999852 335666778999999999999999999999875 3332 334466778889999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch----HHHHHHHHHHHhhcCChHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN----VFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
+.|..+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 33566788899999999999999999999988764433 23467777778888999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
+.+..+.+.+ ....--.+.......|+++.|.+.++.+.+.+...-+.+...+..+|...|+.++...++..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999987544 455556778889999999999999999999876666788899999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh---cCchHHHHHHHHHhh
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA---DGKMDKARDLFLDME 367 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 367 (369)
+....-..+........-.+.|...+.+-+.. .|+...+..++..... .|+..+.+-.+++|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55555556655555555566666666555544 6899999999987643 466777777777775
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.5e-14 Score=110.54 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=229.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHh
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCY 107 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 107 (369)
-.++.++|+++|-.|.+.+ +.+..+-.+|...|.+.|..++|+++.+.+.++.--+. ......|..-|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 4568999999999999976 56678889999999999999999999999987621111 2234557788899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNR 183 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 183 (369)
.|-++.|+.+|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.++
T Consensus 120 aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999998864 33566788899999999999999999999998875543 3346667777778899999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 184 AEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
|..++.+..+.+ +..+.+-..+.......|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+.++.+
T Consensus 199 A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998875 5556666678889999999999999999999987666667888999999999999999999999988
Q ss_pred cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHhccc
Q 036461 264 HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK---SGRLKIAWELFRSLPR 333 (369)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 333 (369)
... .......+.+.-....-.+.|...+.+-... +|+...+..++..-.. .|+..+....+++|+.
T Consensus 278 ~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 643 4444445555444555566676666655544 7999999999986543 3456667777777764
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.4e-13 Score=110.75 Aligned_cols=350 Identities=12% Similarity=0.112 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
-|+++|++..+. .|+..+|++.|..-.+.+.++.|..++++..- +.|++..|.....--.+.|+...|..
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 377888888875 78999999999999999999999999998887 46888889888888888899999999
Q ss_pred HHHHhHhC-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhCCChhHHHHH-----
Q 036461 82 LFLKMKDE-N-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIMNELCKNGKMDEASRL----- 152 (369)
Q Consensus 82 ~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~----- 152 (369)
+|+...+. | -..+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|..+...=-+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99888764 1 1112334555555555677888888888888775 2222 23344444433345654443333
Q ss_pred ---HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHH---HHHHhhcCChHHH
Q 036461 153 ---LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSIL---INGYCKNKEIEGA 219 (369)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l---~~~~~~~~~~~~a 219 (369)
|+...+.+ +.|-.+|-..++.-...|+.+...++++++...- +|-. .+|.-+ +-.-....+++.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444443 5577888888888888899999999999998763 4421 112111 1112346789999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHH----HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGL----FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRT 295 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (369)
.++|+..++. ++....||..+-..| .+..+...|.+++...+. ..|...++...+..-.+.++++.+..+|++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998884 444556666554444 367788999999988765 467888999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC-cccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 296 LRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV-LIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.+..+ |-+-.+|...+..-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|..+++++.+
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99886 6677888888888888999999999999888753 223455788888888899999999999998875
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.5e-15 Score=126.61 Aligned_cols=289 Identities=15% Similarity=0.103 Sum_probs=220.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCC
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 110 (369)
-+..+|+..|+++.... ..+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+.
T Consensus 333 y~~~~A~~~~~klp~h~-------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHHhhHHhc-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 35678999999866543 4445677788899999999999999999987641 112567777776544221
Q ss_pred HHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 111 WNEAKCLF-IEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 111 ~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
-++..+ +.++.. -+-.+.+|..+..+|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+
T Consensus 404 --v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 404 --VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 223333 333333 24467899999999999999999999999998874 2367888888888888999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC
Q 036461 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (369)
...... +.+-.+|-.+...|.+.++++.|.-.|+++.+-++. +.+....+...+.+.|+.++|+.+++++...+. -|
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn 556 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KN 556 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CC
Confidence 888653 344556666788899999999999999999887544 666777788888899999999999999887653 35
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 338 (369)
+...-..+..+...+++++|+..++++++.- +.+..++..++..|.+.|+.+.|+.-|.-+.+...++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5555566777788899999999999998764 5567788888899999999999998888887764433
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.9e-16 Score=128.22 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=224.3
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhCCChhHHHH
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+.+...- -+...|...+..+-+ .-+--.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 3678999999996665 4445577778899999999999999999999875210 144566666554432 112122
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
+-+.+.+. .+..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22333433 25578999999999999999999999999999875 44788999888888999999999999999987633
Q ss_pred CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036461 232 KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCL 311 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (369)
. +...|-.+...|.+.++++.|+-.|+.+.+.+ +.+......++..+.+.|+.++|+++++++...+ +.|+..-..-
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 3 44566678889999999999999999999865 3467777888899999999999999999999877 5566666667
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|--+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 77888899999999999999886 3336678888999999999999998776433
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.4e-14 Score=114.45 Aligned_cols=221 Identities=16% Similarity=0.121 Sum_probs=175.2
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+.-.|+...+..-|+..+..... +...|..+..+|....+.++....|....+.+ +.++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34467888888888888877533 33337777888999999999999999998886 66778888888888888999999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..-|++.++..+. +...|..+..+..+.+.++++...|++.++. .+..++.|+...+.+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999986433 5566777777778899999999999999887 5667899999999999999999999999999876
Q ss_pred CCC-------CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 300 KYE-------LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 300 ~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
... +.+.+...++.. .-.+++..|..++++..+.+.+ ....+..|...-.+.|+.++|+++|++-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 321 112222223222 2348999999999999986433 4558889999999999999999999874
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=1e-13 Score=109.04 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=230.1
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.|+|.+|++...+..+.+.. ....|..-.++.-+.|+.+.+-.++.+..+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999998877543 45556666778888999999999999998864455666777788889999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
++.+.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999886 457788899999999999999999999999988865544 3566666666666666665566666
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 226 MLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ . ...-.+.+.++.+.-.+..+...... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6554 444677778888899999999999999999998865554 2 22224557788888777777776554 5677
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 89999999999999999999999988875 789999999999999999999999988764
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=9.8e-14 Score=109.17 Aligned_cols=293 Identities=13% Similarity=0.091 Sum_probs=235.0
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 25 LINGLCR--TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 25 l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
+.+++.+ .|+|.+|.++..+..+.+ +.....|..-+++.-..|+.+.+-.++.++.+..-.++.....+..
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 4444433 599999999999977765 2335566777788888999999999999998864456677778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGF 175 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 175 (369)
+.....|+++.|..-++++...+.. +........++|.+.|++.....++..+.+.+.-.+. .+|..+++-.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988644 6778899999999999999999999999998865443 3566666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+++..|. -.....+.+.++...-+
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 6666666666677766544 255677777888899999999999999999999877665 22233456778888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+..+.-.+. .+.++..+.++...|.+.+.|.+|...|+...+. .|+...|+.+..++.+.|++..|.+..++...
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 877776654 2446689999999999999999999999988766 79999999999999999999999999988754
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=6.8e-14 Score=112.07 Aligned_cols=346 Identities=16% Similarity=0.130 Sum_probs=236.9
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc--cc----cchhhHHHHH-----HH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV--CK----PNTVTYTTII-----DG 69 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~----~~~~~~~~l~-----~~ 69 (369)
++|+.-|+.+.+. .|+..+-..|+-++...|+-+...+.|.++....++.+.. ++ |+....+.-+ .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 4788899998886 5788776677777888899999999999998755322110 11 2222222211 11
Q ss_pred HHhcC--ChHHHHHHHHHhHhCCCCCCHH-----h--------H--------HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036461 70 LCKEG--FVDKAKELFLKMKDENINPNVV-----T--------Y--------NSLIHGFCYANDWNEAKCLFIEMMDQGV 126 (369)
Q Consensus 70 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~--------~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (369)
.-+.+ +.++++-.--+++..=+.|+-. + + ..-.-.+.+.|+++.|+++++-+.+...
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 11111 1222222222222211222210 0 0 0112356777888888877776654321
Q ss_pred CCCh-------------------------------hhHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 127 QPNV-------------------------------VSFNV-----IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 127 ~~~~-------------------------------~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
+... .-|+. -.......|++++|.+.|.+.+.....- ......
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHH
Confidence 1100 01111 0111223678999999999988764332 233333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
+.-.+-..|+.++|+++|-++...- ..+..+...+...|-...+..+|++++.+.... ++.|+...+.|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 4556788999999999998886542 456777888889999999999999999988876 55688899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG-LCKSGRLKIAWELFR 329 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 329 (369)
-..|++++-+-.+. ++.+.++...+...|....-+++++..|++..-. .|+..-|..++.. +.+.|++..|..+|+
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999988766555 5678899999999999999999999999998754 7999999887754 567899999999999
Q ss_pred hcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 330 SLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
+..+. ++-|......|++.+...|-
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccc
Confidence 99876 55588888888888876664
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-13 Score=109.89 Aligned_cols=294 Identities=12% Similarity=0.053 Sum_probs=228.4
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCCHHhHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHG 104 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 104 (369)
.++....+.+++++-.+.....+ ++.+...-+....+.....++++|+.+|+++.+... -.|..+|..++..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 34555567788888888888877 455555566666677788999999999999988621 1256777776644
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (369)
- ..+ ..+..+.+-...--+-.+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|...++...|
T Consensus 309 ~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 222 122222222211123345678888899999999999999999999987 44678899999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 185 EELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+.++++.+.+ |.|-..|-.+.++|.-.+.+.-|+-+|++...-.+ .|...|.+|..+|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999986 78899999999999999999999999999998754 38899999999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 265 GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL----K-YEL-DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
|- .+...+..+...|.+.++.++|...|++-++. | ..| ...+...|...+.+.+++++|..........
T Consensus 462 ~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 63 36688999999999999999999999887652 2 122 2334444667788888998887766665543
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.3e-12 Score=105.28 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|+.+|++.+.-+ ..+...|...+..-.++..+..|..+++++...- |.-...|.-.+..--..|++..|.+
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------chHHHHHHHHHHHHHHhcccHHHHH
Confidence 6888999998876 5788889999999999999999999999998854 3445677777777778899999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-C
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-G 160 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 160 (369)
+|++-.+. .|+...|++.+..-.+.+.++.|..+|++..-. .|+..+|......=.+.|....+..+|+.+.+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998874 789999999999999999999999999998864 589999998888888899999999999887754 1
Q ss_pred C-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------------------------------------------CC
Q 036461 161 V-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-------------------------------------------GC 196 (369)
Q Consensus 161 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~ 196 (369)
- ..+...+.+....-.++..++.|.-+|+-...+ .-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 112223333333333344444444444333221 01
Q ss_pred CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH-H-hHHHHH--------HHHHhcccHHHHHHHHHHHHHcCC
Q 036461 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-V-IYNTLF--------IGLFEIHQVERAFKLFDEMQRHGV 266 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~ 266 (369)
+.|-.+|-..+..-...|+.+...++|++.+.. ++|-. . .|...+ -.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 345556666777777788899999999988876 34421 1 121111 1113467888899999888874 3
Q ss_pred CcCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHH
Q 036461 267 AADTWAYRT----FIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVT 342 (369)
Q Consensus 267 ~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 342 (369)
+-...|+.. ....-.++.++..|.+++..++ |..|...+|...|..-.+.+++|....+|++.++.++. +..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHH
Confidence 333444443 3344457888999999998877 55889999999999999999999999999999987533 6778
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 343 YNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|......-...|+.+.|..+|+-...
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 88888888889999999999875543
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=1.4e-12 Score=109.01 Aligned_cols=332 Identities=12% Similarity=0.011 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
+|..-...|.+.+.++-|..+|..+.+-. +.+...|......--..|..+....+++++... .+-....|..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM 589 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLM 589 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHH
Confidence 55555556666666666666666555543 334455555555545555555555555555543 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
....+-..|+...|..++....+.... +...|...+..-.....++.|..+|.+.... .|+..+|.--+...--.++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 444455555555555555555554222 4445555555555555555555555555443 2344444444444444455
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 260 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (369)
.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. .+-....|..|...--+.|++-+|..++++
T Consensus 667 ~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 555555555554431 223334445555555555555555555444433 111233344444444444455555555555
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------------------------CCCCCHHHHHHH
Q 036461 261 MQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----------------------------KYELDIRAYNCL 311 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~l 311 (369)
..-.+ +-+...|...++.-.+.|+.+.|..+..++++. .+..|+.+...+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai 823 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI 823 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence 44433 224445555555555555555555444443321 124466666777
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
...+....+++.|.+.|.+.++.+ +....+|..+...+.+.|.-++-.+++.+..
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 777777788888888888888764 2255678888888888887777777766543
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=3.8e-12 Score=106.52 Aligned_cols=301 Identities=13% Similarity=0.055 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
..+|+.-...|.+.+.++-|..+|...++. .+.+...|......--..|..+.-..+|++.... .+-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 345666667777777777777777777765 3446666776666666677888888888888776 33355566666777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+-..|+...|..++..+.+... .+...|..-+.......+++.|..+|.+.... .++..+|..-+...--.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 7778888888888888888753 36778888888888888899999988888775 46677776666666667888899
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+++++.++. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++-....|..+...-.+.|++-.|..++++..-.
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9988888875 2223457778888888888888888888776654 3445667777777777888899999999988876
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-------------------------cccCHHHHHHHHHHH
Q 036461 300 KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-------------------------LIADVVTYNIMIHAL 350 (369)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~ 350 (369)
+ |.+...|...|+.-.+.|..+.|..+..++++. | ..-|+.+...+...|
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 5 667888888888888899888887666554432 1 112444555566667
Q ss_pred HhcCchHHHHHHHHHhhc
Q 036461 351 CADGKMDKARDLFLDMEA 368 (369)
Q Consensus 351 ~~~g~~~~A~~~~~~m~~ 368 (369)
....++++|+++|++..+
T Consensus 828 w~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 777778888888877543
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=2.6e-13 Score=119.37 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh---------cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK 72 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (369)
+|++.|++..+.. |.+...|..+..++.. .+++++|...++++.+.+ |.+...+..+..++..
T Consensus 279 ~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 279 QALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHH
Confidence 5777777777764 4445566555554432 234677777777777766 4566777777777777
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
.|++++|...|+++.+.+ |.+...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 777788887777777653 335666777777777777777787777777765422 222233344445556777777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
++++.+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7776654322244455666667777777777777777765442 223334445555555555 356665555554
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.1e-14 Score=108.43 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=179.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..+.++|.+..++..|+.++.+-.+. .+-++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46778888888888888888887765 456778888888888888888888888887765 233444445567778888
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
++.++|.++++...+.. +.++.....+...|.-.++++.|+.+|+++++.|+. ++..|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888887765 566777777777788888888888888888888876 7788888888888888888888888
Q ss_pred HHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 259 DEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 259 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+....--.|+ ...|-.+.......||+..|.+.|+-....+ +.+...++.|.-.-.+.|+.+.|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776433333 4567777777788888888888888887665 556778888888888888888888888877654
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=9.8e-13 Score=115.72 Aligned_cols=234 Identities=16% Similarity=0.073 Sum_probs=153.3
Q ss_pred cCHhHHHHHHHHHHh-----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh---------cCChHHHHHH
Q 036461 17 PNVFTYNTLINGLCR-----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK---------EGFVDKAKEL 82 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~ 82 (369)
.+..+|...+++... .+++++|+..|++..+.+ |.+...|..+..++.. .+++++|...
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 455666666665422 234678999999999876 4456677777665542 2347788888
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
++++.+.+ |.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.+.+.+..
T Consensus 327 ~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 327 AIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88887763 3367777777777888888888888888887764 334566777777888888888888888888776532
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
+...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++..... .+....+.+.
T Consensus 405 -~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~ 482 (553)
T PRK12370 405 -RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLY 482 (553)
T ss_pred -ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHH
Confidence 23333334445666777888888887776553233445566667777778888888888777655421 1233344444
Q ss_pred HHHHhcccHHHHHHHHHHHHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~ 263 (369)
..+...| +.+...++.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccH--HHHHHHHHHHHH
Confidence 5555555 366665555544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=5.3e-13 Score=105.06 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 244 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (369)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666666666666666665543 334555556666666666666666666666655322 34455556666
Q ss_pred HHhcccHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRHGV-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
+...|++++|...+........ +.....+..+..++...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777666655321 1233455556666777777777777777776654 3345666677777777777777
Q ss_pred HHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 324 AWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|...+++..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777776654 23355566666677777777777777766654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=9.9e-13 Score=103.50 Aligned_cols=201 Identities=15% Similarity=0.084 Sum_probs=129.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566666667777777777777777666542 3345566666667777777777777777766653 224455566666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.+...|++++|...++...+... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66777777777777777665421 1233455556667777777777777777776653 334556666777777777777
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777665 233455555666666777777777777666554
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-12 Score=104.61 Aligned_cols=286 Identities=14% Similarity=0.040 Sum_probs=200.9
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
..++.....-.+.+...+++.+..++++.+.+.+ |++...+..-|.++...|+..+-..+=.++.+. .|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a 312 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKA 312 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCC
Confidence 3455556666667777788888888888888776 667777777777888888877777777777765 45567
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.+|-.+.-.|.-.|+..+|.+.|.+....... -...|..+...+.-.|..++|+..|..+-+.= +-....+--+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 78888887777778888888888877654322 34467777778888888888888887766541 11111222344456
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC--CCC----CcHHhHHHHHHHHHhcc
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIK----PDVVIYNTLFIGLFEIH 249 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~ 249 (369)
.+.++.+.|.+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..+.. ... .-..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 77788888888888887764 667777777777777778888888888777632 011 12345677778888888
Q ss_pred cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036461 250 QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (369)
.+++|+..++..+... +.+..++..+.-.|...|+++.|.+.|.+..-. .|+..+-..++..+
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 8888888888877763 457778888888888888888888888877754 56655555554433
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.6e-12 Score=102.38 Aligned_cols=257 Identities=13% Similarity=0.086 Sum_probs=106.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
.-+...+++.+..++.+.+.+.. ++....+..-+.++...|+..+-..+=..+.+.- |..+.+|.++.-.|...|+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 33444444455555444444431 3333334444444444444444444444444331 233444444444444445555
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+|.++|.+....+ +.-...|-.+...+.-.|..++|+..+..+-+. ++-...-+--+.--|.+.++.+.|.+.|.+..
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555554444332 122233444444444444444444444444332 00011111122233444444444444444444
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 263 RHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
.. .|.|+..++.+.-.....+.+.+|..+|+..+..- ...-..+++.|+.+|.+.+++++|+..+++.+...
T Consensus 408 ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~- 485 (611)
T KOG1173|consen 408 AI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS- 485 (611)
T ss_pred hc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence 33 12233344444444444444444444444433110 00112234444444444444444444444444331
Q ss_pred ccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 337 IADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+-+..++.++.-.|...|+++.|++.|++
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 22444444444444444444444444443
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.4e-13 Score=103.47 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..|-.+|.+..++..|+.++.+-.+. .+.+......+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555666666666666666555543 345555555556666666666666666555543 222333333445555555
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+++++.+.| ..++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666555543 2344444444555555566666666666666655 344555555555555566666666666
Q ss_pred HHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 224 SEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 224 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+....--.|+ ...|-.+.......||+..|.+.|+-.+.++ +.+...++.+.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55554322222 2344455555555666666666666555543 234555666666566666666666666655543
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=4.6e-11 Score=102.01 Aligned_cols=296 Identities=17% Similarity=0.087 Sum_probs=209.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
..-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .+..-|..+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhh
Confidence 333455678889999999999886654 554566677888999999999999999999999853 244455555555422
Q ss_pred C-----CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 143 N-----GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV-NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 143 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
. .+.+....+|+.+...- |.......+.-.+..-..+ ..+..++......|+|+ +|+.+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2 25677788888887653 3333333332222222222 34556667777777543 455555556555555
Q ss_pred HHHHHHHHHHHhC----C----------CCCcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSK----G----------IKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 217 ~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
.-...++...... + -+|+. .++..+.+.|...|++++|+.+++..+++. +..+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 5555555555432 1 12333 345667888889999999999999999974 33478899999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH------HH--HHHHHHHHh
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV------TY--NIMIHALCA 352 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~ 352 (369)
-..|++.+|...++.+...+ .-|...-+..+..+.+.|+.++|..++....+.+..|-.. .| .-...+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 5577777778888999999999999999998776433221 22 345578999
Q ss_pred cCchHHHHHHHHHhh
Q 036461 353 DGKMDKARDLFLDME 367 (369)
Q Consensus 353 ~g~~~~A~~~~~~m~ 367 (369)
.|++..|++.|..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999998887654
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.9e-12 Score=111.77 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=169.8
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 84 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (369)
.++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-.. .+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC----
Confidence 56788899999999999999999999999999998 999998877 6777888999988888888877765
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHh----cCCCCChhhHH--------------HHHHHHHhC
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYANDWNE---AKCLFIEMMD----QGVQPNVVSFN--------------VIMNELCKN 143 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~ 143 (369)
.|.+.+|..|..+|...|+... +.+.+..+.. .|+.....-+- ..+......
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788899999999999988654 3332222221 22211111111 111122223
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
|-++.+++++..+-...-. .+..+ .++-+.... .+++-..+...... .+++.+|..++.+..-.|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 3333333333322111000 11111 133222222 23333333333332 57888888888888888999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 223 YSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
+.+|.+.|++.+..-|..|+.+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888888777777655 77788888888888888888998888888777777554
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.4e-10 Score=94.03 Aligned_cols=333 Identities=15% Similarity=0.104 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-HHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN-VVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 98 (369)
.+.....-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+|+++.+--.+..+. .|+ +..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl 186 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKAL 186 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHH
Confidence 3455667788999999999999999985 477 888999999999999999999988888774 333 3455
Q ss_pred HHHHHHHHhcCCHHHHHH----------------------HHHHH--------Hh-cC--CCCChhhHHHHHHHHHh---
Q 036461 99 NSLIHGFCYANDWNEAKC----------------------LFIEM--------MD-QG--VQPNVVSFNVIMNELCK--- 142 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~----------------------~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~--- 142 (369)
..-..++-..|++.+|+. ++++. .. .+ +-|+..........+..
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 555666666777666543 11111 01 11 12333333333322211
Q ss_pred -----CCC-----hhHHHHHHH------------HHHHc------CCCcc---------HHHHHHHHHHHHhcCChHHHH
Q 036461 143 -----NGK-----MDEASRLLE------------LMIQI------GVRPN---------AFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 143 -----~~~-----~~~a~~~~~------------~~~~~------~~~~~---------~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.++ ..++.+.+. .+.+. ....+ ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 000 111222111 11110 01111 222222233445678888999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
.-|+..+... +.+...|-.+..+|....+.++.+..|.+..+.++. ++.+|..=.+.+.-.+++++|..=|+..+..+
T Consensus 347 ~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998875 333334777888899999999999999999987654 67788888888888999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc-----cC-
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI-----AD- 339 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~- 339 (369)
+.+...+..+..+..+.+.++++...|++.++. +|..+.+|+.....+...++++.|.+.|+..++.... .+
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 234555666666667889999999999999864 4667889999999999999999999999988764211 11
Q ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 340 -VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 340 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+.+...++..- -.+++..|.+++++..+
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIE 531 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHc
Confidence 22222222222 34889999999887654
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=1.4e-10 Score=99.10 Aligned_cols=298 Identities=16% Similarity=0.131 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++.......+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|...|.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 44455667788999999999999886654 34556777888999999999999999999999985 33555555
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 100 SLIHGFCYA-----NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 100 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
.+..+..-. .+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|..+-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 666555222 35777888999887653 3333333332222222223 34556667777888653 4555555
Q ss_pred HHHhcCChHHHHHHHHHHHhc----C----------CCchH--HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHh
Q 036461 174 GFCLTGRVNRAEELFVSMESM----G----------CKHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 237 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (369)
.|......+-..+++...... + -+|+. .++..+.+.|...|++++|+.++++.++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 555555555555555554321 1 13333 34466788888999999999999999997433 4678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------HH--H
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR------AY--N 309 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~ 309 (369)
|..-.+.+-..|++.+|...++.....+. -|...-+..+..+.++|++++|..++....+.+..|-.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 88889999999999999999999998753 477777788888999999999999999887665433221 12 3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..+.+|.+.|++..|++-|..+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678899999988887666554
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-10 Score=91.55 Aligned_cols=303 Identities=15% Similarity=0.066 Sum_probs=223.5
Q ss_pred ccchhhHHHHHHHHHh--cCChHHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 036461 57 KPNTVTYTTIIDGLCK--EGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
+|+.......+.+++. .++...|...+-.+... -.+.|+.....+..++...|+..+|+..|++....+ +-+....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhH
Confidence 4444444445555444 34445555555444332 356678888999999999999999999999987653 1133334
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
....-.+.+.|+.+....+...+.... .-+...|..-+......++++.|+.+-++.++.+ +.+...+..-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 444555678899998888888887653 2244445555566677889999999999988775 55667777777888899
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHH-HhCCCHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI-DGL-CKNGYIVEAVE 291 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~ 291 (369)
+++++|.-.|+...... +-+...|..|+.+|...|.+.+|...-+...+. .+.+..++..+. ..+ ....--++|..
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999988763 237789999999999999999998888776654 344666666553 223 33445688999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 292 LFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+++...... |.-....+.+...|...|+.+.++.++++.... .||....+.|.+.+...+.+++|++.|....
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999887663 334567788888999999999999999998874 6899999999999999999999998886543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=2.8e-11 Score=102.09 Aligned_cols=241 Identities=20% Similarity=0.135 Sum_probs=162.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHc-----
Q 036461 92 NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-----GV-QPNVV-SFNVIMNELCKNGKMDEASRLLELMIQI----- 159 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 159 (369)
|.-..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+.+...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333455666888899999999999998887654 21 22222 2334667788888999988888888754
Q ss_pred C--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCchH-HHHHHHHHHHhhcCChHHHHHHHHHHHhC-
Q 036461 160 G--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-----G-CKHNV-FSYSILINGYCKNKEIEGALSLYSEMLSK- 229 (369)
Q Consensus 160 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 229 (369)
| .+.-..+++.|..+|.+.|++++|...++++... + ..+.+ ..++.+...+...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222456677778888899988888888776432 1 11222 23566677778888888888888776542
Q ss_pred --CCCCc----HHhHHHHHHHHHhcccHHHHHHHHHHHHHc----C---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 230 --GIKPD----VVIYNTLFIGLFEIHQVERAFKLFDEMQRH----G---VAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 230 --~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
-+.++ ..+++.|...|...|++++|..+++.++.. + ..-....++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11222 356788888888888888888888876642 1 1122345677777888888888888877765
Q ss_pred HHc----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 297 RIL----K--YELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 297 ~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
... | .+....+|..|+..|...|+++.|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 2 12234677888888888888888888877665
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=2.1e-09 Score=90.36 Aligned_cols=170 Identities=9% Similarity=-0.022 Sum_probs=106.2
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
..+.++|+.+.-.+....++++|++.|..+...+ +.|...|.-+.-.-++.++++........+.+. .+...
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~r 143 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQR 143 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhH
Confidence 4566778888777777888888888888888766 566777777777777777777777776666654 23345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHH------HHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQG-VQPNVVSFNVIM------NELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
..|..++.++.-.|+...|..+++...+.. ..|+...+.... ......|..+.|.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 566777777777788888888888776653 234444443322 2233455555555555443322 11111122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
..-...+.+.++.++|..++..+...
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 23345556667777777777776665
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=9.9e-10 Score=94.07 Aligned_cols=349 Identities=13% Similarity=0.027 Sum_probs=205.9
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
+.+++...+..++..|..+.-++...|++..+.+.|++....- -.....|..+...+...|.-..|..+++..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 3444444456677788888888888888888888888766532 223455666666666666655666655554
Q ss_pred HhCCC-CCCHHhHHHHHHHHHh-cCCHH--------------------------------------------------HH
Q 036461 87 KDENI-NPNVVTYNSLIHGFCY-ANDWN--------------------------------------------------EA 114 (369)
Q Consensus 87 ~~~~~-~~~~~~~~~l~~~~~~-~~~~~--------------------------------------------------~a 114 (369)
..... ++++..+...-..|.+ .+..+ ++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 33211 1122222222222221 22333 34
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 115 KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
++.+++..+.+.. |..+...+.--|+..++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+.....
T Consensus 464 lqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4444444443221 223333333445556666677777666666644556666666666666667777777766655432
Q ss_pred CCC-------------------chHHHHHHHHHHHhh-----------------------cCChHHHHHHHHHHH-----
Q 036461 195 GCK-------------------HNVFSYSILINGYCK-----------------------NKEIEGALSLYSEML----- 227 (369)
Q Consensus 195 ~~~-------------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~----- 227 (369)
-.. ....+...++..+-. .++..++.+....+.
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 100 001111111111110 001111111111110
Q ss_pred ---hCC-----------CCCc------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 228 ---SKG-----------IKPD------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 228 ---~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
..+ ..|+ ...|......+.+.+..+++...+.+.... .+.....|......+...|+++
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 000 0011 112233445566677777887777777665 3456677777788888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH--HHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE--LFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|.+.|......+ |.++....++...+.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.+.|.-
T Consensus 702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999999998776 6678889999999999999888877 9999998753 3889999999999999999999998875
Q ss_pred h
Q 036461 366 M 366 (369)
Q Consensus 366 m 366 (369)
.
T Consensus 780 a 780 (799)
T KOG4162|consen 780 A 780 (799)
T ss_pred H
Confidence 4
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=1.2e-10 Score=94.09 Aligned_cols=225 Identities=13% Similarity=0.000 Sum_probs=149.9
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCccccc--chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
.....+..+.++.-+.++....+ ..| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~ 108 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYL 108 (296)
T ss_pred ccCCchHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34444677788888888876541 112 24567788888888899999999888888763 44678888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
...|++++|...|++..+..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999888876422 45677778888888899999999998888764 33222222223344567888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh---CCC--C-CcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS---KGI--K-PDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
..+.+..... +++...+ .+. ....|+...+ ..+..+.+ ..+ . .....|..+...+...|++++|...|+
T Consensus 186 ~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 186 ENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8887655332 2332222 222 2234444333 23333332 111 1 134578888888889999999999999
Q ss_pred HHHHcCC
Q 036461 260 EMQRHGV 266 (369)
Q Consensus 260 ~~~~~~~ 266 (369)
+..+.++
T Consensus 261 ~Al~~~~ 267 (296)
T PRK11189 261 LALANNV 267 (296)
T ss_pred HHHHhCC
Confidence 8887653
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=4.8e-09 Score=88.31 Aligned_cols=353 Identities=12% Similarity=0.089 Sum_probs=197.9
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChH---HH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD---KA 79 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a 79 (369)
+++++++.++ .++..-+-.|..++..+++++|.+.+......+...+.-.+.+...|..+-...++..+.- ..
T Consensus 157 s~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 157 SIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 5666776664 3556678888999999999999999988876553322222333444444444333322111 11
Q ss_pred HHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------------
Q 036461 80 KELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGV------------------------------- 126 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------- 126 (369)
..+++.+... -+| ...|.+|...|.+.|.+++|..+|++.+..-.
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 2222222221 111 12344445555555555555544444433210
Q ss_pred -----------------------------------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc------cH
Q 036461 127 -----------------------------------QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP------NA 165 (369)
Q Consensus 127 -----------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 165 (369)
+.+...|..-.. ...|+..+...+|.++.+. +.| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence 001111111111 1234445555555555443 111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-----------
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGI----------- 231 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 231 (369)
..|..+.+.|-..|+.+.|..+|++..+...+.- ..+|..-...-.++.+++.|+++.+.....--
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4567777888888888888888888876543322 34566666666777888888888777654211
Q ss_pred CC------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 232 KP------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 232 ~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
++ +...|...+...-..|-++....+++++.+..+. ++.........+....-++++.++|++-+..=..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 2233444555555667788888888888876553 4445445555556677788888888876654333443
Q ss_pred -HHHHHHHHHHHc---CCCHHHHHHHHHhcccCCcccCHH--HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 -RAYNCLIDGLCK---SGRLKIAWELFRSLPRGVLIADVV--TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 -~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..|+..+..+.+ ...++.|..+|++.++ +.+|... .|......--+.|-...|+.++++.
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466666655443 3458889999999888 4555443 2222222333458888888888764
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=9.3e-11 Score=99.01 Aligned_cols=239 Identities=19% Similarity=0.177 Sum_probs=178.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-
Q 036461 129 NVVSFNVIMNELCKNGKMDEASRLLELMIQI-----G-VRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESM-----G- 195 (369)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 195 (369)
-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++.+. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677899999999999999999988775 2 123333 3345778899999999999999988643 2
Q ss_pred -CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC-----CC-CCcH-HhHHHHHHHHHhcccHHHHHHHHHHHHHc---
Q 036461 196 -CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GI-KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMQRH--- 264 (369)
Q Consensus 196 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 264 (369)
.+.-..+++.|..+|.+.|++++|..+++...+- +. .|.. ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999999888877642 11 2222 24566777888899999999999876542
Q ss_pred CCCcC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 265 GVAAD----TWAYRTFIDGLCKNGYIVEAVELFRTLRILK-------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 265 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
-+.++ ..++..+...|...|++++|..+++.++... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11222 4578899999999999999999999987531 112345778899999999999999888877543
Q ss_pred ----CCc-ccC-HHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 334 ----GVL-IAD-VVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 334 ----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.|. .|+ ..+|..|..+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 121 223 4688999999999999999999987654
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-09 Score=87.31 Aligned_cols=292 Identities=15% Similarity=0.051 Sum_probs=217.1
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
.+-.++...|...+-.+..... ++.|+.....+..++...|+.++|+..|++....+ +-+..........+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~-----lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTT-----LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHhcccchhhhHHHHHHhhcc-----CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhc
Confidence 3344555666555544443331 46788899999999999999999999999987642 11333333445556778
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
|+.+....+...+.... ..+...|..-+.......+++.|+.+-++.++.+ +.+...+..-...+...|+.++|.-.|
T Consensus 280 g~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred cCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 89998888888876542 2345556666666777889999999999988875 335666766678888999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH-HHHH-hcccHHHHHHHHHHHHHcCC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF-IGLF-EIHQVERAFKLFDEMQRHGV 266 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~ 266 (369)
+...... |.+..+|..++.+|...|.+.+|..+-...... ...+..+...+. ..+. ....-++|.++++...+.
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 9988774 578899999999999999999998887776654 223455554442 2222 233457888888887764
Q ss_pred CcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.|+ ......+...+...|..+.++.++++.... .||....+.|.+.+...+.+++|...|....+.
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344 456777888889999999999999988765 688889999999999999999999999888775
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=2.6e-10 Score=83.63 Aligned_cols=197 Identities=14% Similarity=0.023 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
...|.-.|...|+...|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....++.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344444455555555555555554432 2233444444455555555555555555544432 1234444444444555
Q ss_pred CCChhHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHH
Q 036461 143 NGKMDEASRLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS 221 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (369)
.|++++|...|+...... ......+|..+.-+..+.|+.+.|...|++..... +....+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555444431 11123344444444455555555555555554443 2333344444445555555555555
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 222 LYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+++.....+. ++..+....++.-...|+.+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555544433 4444444444444445555544444444433
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.3e-10 Score=87.18 Aligned_cols=296 Identities=14% Similarity=0.137 Sum_probs=205.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..-+.+.+..+.+..++..|++++..-.++. +.+......|..+|....++..|-..|+++... .|...-|
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 3346778888889999999999999988876 457888999999999999999999999999774 4454444
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 99 NS-LIHGFCYANDWNEAKCLFIEMMDQGVQPNVV--SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 99 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.. -...+.+.+.+.+|+++...|... ++.. +...-.......+++..+..++++.-..| +..+.+...-..
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 32 356677888999999999888653 2222 22222334456788888888888765433 445555556666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-------------cHH------
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-------------DVV------ 236 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~------ 236 (369)
.+.|+++.|.+-|....+.+.-.....|+..+ +..+.++++.|+++..+++++|++. |..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 78899999999999988766445566676555 5566789999999999998876432 111
Q ss_pred --hHHHHHH-------HHHhcccHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 036461 237 --IYNTLFI-------GLFEIHQVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIR 306 (369)
Q Consensus 237 --~~~~l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 306 (369)
.-+.++. .+.+.++++.|.+.+-.|.- .....|+.++..+.-.- ..+++.+..+-+.-+.... |-...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChH
Confidence 1122332 34567888888887777642 12234555555443222 2445666666666666654 45678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
+|..++-.||+..-++.|-.++.+-.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 88888899999888888888876543
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=2.9e-10 Score=91.92 Aligned_cols=232 Identities=9% Similarity=0.030 Sum_probs=164.5
Q ss_pred CChHHHHHHHHHhHhCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 74 GFVDKAKELFLKMKDEN-INP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
+..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46777788888887542 122 24568888889999999999999999999875 336789999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..|+...+.. +.+..++..+..++...|++++|.+.|+...+.. +.+. ........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999875 3357788889999999999999999999998874 2233 22222233455778999999997766542
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc---CC---CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH---GV---AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
.|+...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+++...+ +++
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2332222 222 2334554443 244444321 11 1234689999999999999999999999999876 344
Q ss_pred HHHH-HHHHHHH
Q 036461 305 IRAY-NCLIDGL 315 (369)
Q Consensus 305 ~~~~-~~l~~~~ 315 (369)
..-+ ..++...
T Consensus 270 ~~e~~~~~~e~~ 281 (296)
T PRK11189 270 FVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHH
Confidence 4433 3344433
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.5e-09 Score=83.68 Aligned_cols=348 Identities=14% Similarity=0.088 Sum_probs=181.0
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
|+.+++--...+-+....+-.-+..++.+.|++++|+..+..+...+ .++...+..|..++.-.|.+.+|..+
T Consensus 41 AislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 41 AISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 44555544433322222222334566778899999999999888765 57777888888887778888888877
Q ss_pred HHHhHhCCCC-----------CCH--------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH-
Q 036461 83 FLKMKDENIN-----------PNV--------------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI- 136 (369)
Q Consensus 83 ~~~~~~~~~~-----------~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 136 (369)
-.+..+.... .|. .--.+|.......-.+.+|+.++.+....+ |.-...+..
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 6655432100 000 001122222222334677888887777652 344444443
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH--------------HhcC-------
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM--------------ESMG------- 195 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~------- 195 (369)
.-+|.+..-++-+.+++.-.++. .+.++...+.......+.=+-..|..-.+.+ .+++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 34555666666666666665553 2223333333222222211111111111111 1110
Q ss_pred -----CCc-----hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH---------------------------
Q 036461 196 -----CKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY--------------------------- 238 (369)
Q Consensus 196 -----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------- 238 (369)
+-| -+.+-..++-.|.+.+++.+|..+.+++... .|.....
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 000 1122234445566677777777666554321 1211111
Q ss_pred --------------HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 239 --------------NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 239 --------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
..+..++.-..+++.++..++.+...-. .|....-.+.++++..|++.+|.++|-++....++.+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 1223333344455666666655555422 2333333566777778888888888877665443433
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH-HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 305 IRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV-TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 305 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
..-...|.++|.+.+.++.|+.++-++... .+.. ....+...|.+.+.+=-|-+.|+.+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344455667788888888888777666542 1222 3334445677777776666666654
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=2.7e-10 Score=83.61 Aligned_cols=199 Identities=13% Similarity=-0.007 Sum_probs=148.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
+..-+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556667888888888888888888875 4466777788888888888888888888887775 556777788888888
Q ss_pred hcCChHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
..|.+++|...|++....-. .-...+|..+..+..+.|+++.|...+++.++... -.+.....+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888877522 22345677777777888888888888888877642 34556677777778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+++.....+ .++..++...|+.-...|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877666 477777777777777788877777766666553
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=3.2e-09 Score=89.20 Aligned_cols=305 Identities=12% Similarity=0.003 Sum_probs=192.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
....+..+...+...|+.+.+.+.+........ .++. .........+...|++++|..++++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 356677777888888888888777777654311 1122 222233455677899999999999998763 324434432
Q ss_pred HHHHH----hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 137 MNELC----KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 137 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
...+. ..+....+.+.+.... ...+........+...+...|++++|...+++..... +.+...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 22222 2345555555555411 1222234455566778899999999999999999876 5567788889999999
Q ss_pred cCChHHHHHHHHHHHhCCCC-CcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHHhCCC
Q 036461 213 NKEIEGALSLYSEMLSKGIK-PDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAY-R--TFIDGLCKNGY 285 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~ 285 (369)
.|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... . .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998876332 222 3455788889999999999999999864322 1111111 1 33333444554
Q ss_pred HHHHHHH--H-HHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc--------cCHHHHHHHHHHHHhc
Q 036461 286 IVEAVEL--F-RTLRILK-YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI--------ADVVTYNIMIHALCAD 353 (369)
Q Consensus 286 ~~~a~~~--~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 353 (369)
...+.+. + ....... ...........+.++...|+.+.|...++.+...... ...........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 1 1111110 0111122235677788999999999999887653211 0122233344456789
Q ss_pred CchHHHHHHHHHhh
Q 036461 354 GKMDKARDLFLDME 367 (369)
Q Consensus 354 g~~~~A~~~~~~m~ 367 (369)
|++++|.+.+.+..
T Consensus 321 g~~~~A~~~L~~al 334 (355)
T cd05804 321 GNYATALELLGPVR 334 (355)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988754
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=1.6e-11 Score=106.28 Aligned_cols=253 Identities=15% Similarity=0.199 Sum_probs=156.8
Q ss_pred HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 41 LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
++-.+...| +.||..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~g------i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISG------ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhc------CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 444555556 6888899999999999999998887 8888877777778888888888888888877766
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhH---HHHHHHHHH----HcCCCccHHHH--------------HHHHHHHHhcC
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDE---ASRLLELMI----QIGVRPNAFVY--------------NTLMDGFCLTG 179 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~ 179 (369)
.|...+|..+..+|...||... +.+.+..+. ..|+......+ ...+......|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 5778889999999999988655 222111111 11211111111 11222233344
Q ss_pred ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH
Q 036461 180 RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
-++.+++++..+...... .+... +++-+... ..+++-..+.....+ .|+..+|.+++.+-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 455555555444322100 11111 12222222 223333333333322 467777777777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
.+|.+.|.+.+..-|-.++-+ .++...+..+++-|...|+.|+..|+...+-.+...|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777776666665544 67777777777777777777777777777666666554
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=8e-09 Score=86.78 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=193.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+..|..+...+...|+.+.+...+....+.... .++ ..........+...|++++|.+.+++..+. .|.+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~ 78 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLL 78 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHH
Confidence 4556777778888889999988888887765510 112 222333455667789999999999998876 344554
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 036461 97 TYNSLIHGFC----YANDWNEAKCLFIEMMDQGVQPN-VVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTL 171 (369)
Q Consensus 97 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (369)
.+.. ...+. ..+....+.+.+.... ...|+ ......+...+...|++++|...++...+.. +.+...+..+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 5442 22222 2455555555555421 12232 3344456678889999999999999999976 4467778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CchH--HHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCcHHhH-H--HHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGC-KHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIY-N--TLFIG 244 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~ 244 (369)
..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 9999999999999999999876531 1222 3455678889999999999999999865432 1122111 1 22223
Q ss_pred HHhcccHHHHHHH--H-HHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---C-----CHHHHHHHH
Q 036461 245 LFEIHQVERAFKL--F-DEMQRHGV-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE---L-----DIRAYNCLI 312 (369)
Q Consensus 245 ~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~ 312 (369)
+...|..+.+..+ + ........ ............++...|+.+.|..+++.+...... - .........
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 3333432222222 1 11111100 111122235667788899999999999998754322 0 122223333
Q ss_pred HHHHcCCCHHHHHHHHHhccc
Q 036461 313 DGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++...|++++|.+.+.....
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 456789999999999988765
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=3.2e-08 Score=83.52 Aligned_cols=222 Identities=14% Similarity=0.044 Sum_probs=159.4
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 83 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (369)
++..+.+.+ +.+-..++.....-.+...|+.++|..........+ ..+...|..+.-.+....++++|++.|
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-------cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555 345556666666666777888899988888888766 456788888888888888999999999
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CC
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG-VR 162 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 162 (369)
..+...+ +.|...|.-+.-.-++.++++.....-.++.+.. +.....|..++.++.-.|+...|..+++...+.. ..
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9988764 4477888877777788888888888777777652 2245567778888888899999999999888764 24
Q ss_pred ccHHHHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCchHH-HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH
Q 036461 163 PNAFVYNTL------MDGFCLTGRVNRAEELFVSMESMGCKHNVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 163 ~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
|+...+... .....+.|..+.|.+.+...... ..|.. .-..-...+.+.+++++|..++..++.. .||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 555554332 23456678888888887766543 12222 2334566778889999999999999887 3555
Q ss_pred HhHH
Q 036461 236 VIYN 239 (369)
Q Consensus 236 ~~~~ 239 (369)
..|.
T Consensus 253 ~~Yy 256 (700)
T KOG1156|consen 253 LDYY 256 (700)
T ss_pred HHHH
Confidence 4443
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.3e-08 Score=83.45 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=111.2
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.-.++...+ |.+..++.+=+-++.+.+++++|+.+.+.-... ..+...+..-+.+..+.+..++|+
T Consensus 29 e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 29 EEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHHcccHHHHH
Confidence 36777788888765 667778888888888999999988665543221 111112233455666778888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------------------CChhhH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ---------------------------PNVVSF 133 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 133 (369)
..++-... .+..+...-...+.+.+++++|..+|+.+.+.+.+ ....+|
T Consensus 100 k~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 87772221 13345566667778888888888888887544211 012234
Q ss_pred HHHHH---HHHhCCChhHHHHHHHHHHHcC-------------CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 134 NVIMN---ELCKNGKMDEASRLLELMIQIG-------------VRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 134 ~~l~~---~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
..+.+ .+...|++.+|+++++...+.+ +..... .-..+...+-..|+..+|..++..+.+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 33332 4556788888888888773221 000111 11234445667788888888888877664
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.2e-12 Score=73.39 Aligned_cols=49 Identities=49% Similarity=0.931 Sum_probs=29.6
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=3.3e-08 Score=77.20 Aligned_cols=305 Identities=11% Similarity=0.065 Sum_probs=223.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.-..-+...+...|++..|+.-|....+.+ |.+-.++..-...|...|+...|+.=+.++++. +||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHH
Confidence 344555667788889999999999999998865 344555666677888899999999999988874 56543
Q ss_pred hH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Chhh------------HHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 97 TY-NSLIHGFCYANDWNEAKCLFIEMMDQGVQP--NVVS------------FNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 97 ~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
.- ..-...+.++|.+++|..-|+..++....- .... ....+..+...|+...|+.....+++..
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 32 223456788999999999999998764211 1111 2223445667889999999999998874
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHh----
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI---- 237 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 237 (369)
+-+...+..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++...++.++. .||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 4477788888899999999999999888887765 455666667777888899999999998888875 455432
Q ss_pred HHHH---------HHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 238 YNTL---------FIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 238 ~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
|..| +......++|.++....+...+...... ...+..+-.++...|++.+|++...++++.. +.|.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv 341 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH
Confidence 2211 1223445677777777777776543211 2234556667778899999999999998765 5568
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
.++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888899998899999999998887653
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.6e-12 Score=72.10 Aligned_cols=49 Identities=47% Similarity=0.976 Sum_probs=34.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 93 PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777766664
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=2.9e-10 Score=90.56 Aligned_cols=251 Identities=13% Similarity=0.051 Sum_probs=162.8
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD 147 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (369)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44556788888886666 333322223444556778888888877544 333333 3566666666655554445555
Q ss_pred HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 148 EASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.+..-++........ .+.........++...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544433322 23333333445667789999998887653 34566677888899999999999999998
Q ss_pred HhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 227 LSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|..++.+....+ +
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 33444455555443 23588999999997665 56788888889999999999999999999987665 5
Q ss_pred CCHHHHHHHHHHHHcCCCH-HHHHHHHHhcccC
Q 036461 303 LDIRAYNCLIDGLCKSGRL-KIAWELFRSLPRG 334 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 334 (369)
.++.++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5777888888888888887 6677888888764
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=4.3e-10 Score=89.66 Aligned_cols=249 Identities=13% Similarity=0.058 Sum_probs=168.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445788888887666 322222223445566788899999877544 4443333 666666666666555445566
Q ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
.+..-++........ .+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555433322 34444444456677889999999988653 35667778889999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcc
Q 036461 262 QRHGVAADTWAYRTFIDGLCK----NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLI 337 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 337 (369)
.+. ..| .+...+..++.. ...+.+|..+|+++.+. .++++.+.+.++.++...|++++|.+++.+....+.
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 875 334 344555554432 34699999999998764 468899999999999999999999999999887653
Q ss_pred cCHHHHHHHHHHHHhcCch-HHHHHHHHHhh
Q 036461 338 ADVVTYNIMIHALCADGKM-DKARDLFLDME 367 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 367 (369)
-++.+...++.+....|+. +.+.+++.++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3677888889888898988 66777777765
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.30 E-value=3.5e-07 Score=77.51 Aligned_cols=336 Identities=11% Similarity=0.111 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|...+..+.++|++......|++.+..-+ +.....+|...+.-....+-++-+..+|++.++- ++..-+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 455555556666666666666666555431 2223445555555555555555555555555542 2223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----------------------------------------CC--CCC--hhhHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ----------------------------------------GV--QPN--VVSFNVI 136 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------------~~--~~~--~~~~~~l 136 (369)
.+..++..+++++|.+.+...... |+ -+| ...|..|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 445555555555555444443221 11 112 1247778
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------CC------hHHHHHHHHHHHhc
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT----------------GR------VNRAEELFVSMESM 194 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~ 194 (369)
..-|.+.|.++.|..+|++..+.- .+..-|..+.++|+.- ++ ++-....|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 888999999999999998887753 2333343333333211 11 11222222222211
Q ss_pred C-------------------------------------------CCc------hHHHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 195 G-------------------------------------------CKH------NVFSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 195 ~-------------------------------------------~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
. +.| -...|..+...|-..|+.+.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0 000 112355666667777778888888877
Q ss_pred HHhCCCCCc---HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----------CCc------CHHHHHHHHHHHHhCCC
Q 036461 226 MLSKGIKPD---VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----------VAA------DTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 226 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~ 285 (369)
......+-- ..+|..-...-.+..+++.|++++++....- .++ +...|..++..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776533211 2334444445556677777887777664321 011 22345555555566788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-HHHHHHHHHHHh---cCchHHHHH
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-VTYNIMIHALCA---DGKMDKARD 361 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~ 361 (369)
++....+|+++.+..+ .++......+..+-.+.-++++.++|++-+..-..|+. ..|+..+..+.+ .-+.+.|+.
T Consensus 493 festk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8888888888887764 34555555555566777789999999988776444554 478877776654 356888999
Q ss_pred HHHHhhc
Q 036461 362 LFLDMEA 368 (369)
Q Consensus 362 ~~~~m~~ 368 (369)
+|++..+
T Consensus 572 LFEqaL~ 578 (835)
T KOG2047|consen 572 LFEQALD 578 (835)
T ss_pred HHHHHHh
Confidence 9988654
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3e-07 Score=77.02 Aligned_cols=198 Identities=13% Similarity=0.000 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
....+=+..+...|++++|.+...++...+ |.+...+..-+.++.+.+++++|+.+.+.-... ..+...+-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~f 83 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFF 83 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhH
Confidence 344455677888999999999999999875 566778888888999999999999666543221 11111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc----------------
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP---------------- 163 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 163 (369)
.-+.+..+.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 23456668999999999998322 1234477777889999999999999999986543110
Q ss_pred -----------cHHHHHH---HHHHHHhcCChHHHHHHHHHHHhcC-------CCc------hH-HHHHHHHHHHhhcCC
Q 036461 164 -----------NAFVYNT---LMDGFCLTGRVNRAEELFVSMESMG-------CKH------NV-FSYSILINGYCKNKE 215 (369)
Q Consensus 164 -----------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~ 215 (369)
...+|.. ..-.+...|++.+|+++++...+.+ -.. .. .+-..+.-++-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0112322 2335567899999999999883221 001 11 112334555677899
Q ss_pred hHHHHHHHHHHHhCC
Q 036461 216 IEGALSLYSEMLSKG 230 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~ 230 (369)
.++|..++...++.+
T Consensus 240 t~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN 254 (652)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988764
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.1e-07 Score=78.74 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
+.|+..|-+-+... |+|-..|..-..++...|++++|++=-.+..+.. |.-+..|.....++.-.|++++|+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHHhcccHHHHH
Confidence 36888888888876 6688889999999999999999988888777755 334788999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
..|.+-++.. +.|...+..+..++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999988762 34666666666665
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=8e-08 Score=75.48 Aligned_cols=322 Identities=13% Similarity=0.078 Sum_probs=178.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
++-+....++..|+.+++--...+. .....+-.-+..++.+.|++++|+..|..+.+. -.++...+..|..++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHH
Confidence 5567778899999999998776541 112233334567888999999999999998875 456777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC------------------------------ChhHHHHHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG------------------------------KMDEASRLLEL 155 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~~a~~~~~~ 155 (369)
.-.|.+.+|..+-.+..+ ++-.-..++....+.+ .+.+|+.+|..
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877665432 1112222222223333 44555666655
Q ss_pred HHHcCCCccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--
Q 036461 156 MIQIGVRPNAFVYNT-LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-- 232 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (369)
.+..+ |+-...+. +.-+|.+..-++-+.++++...+.- +.+..+.+..+....+.=+-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 55432 33333332 2334555556666666666655442 344444554444444433333333334444332110
Q ss_pred C-----------------------------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 233 P-----------------------------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 233 ~-----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
| -+..-..|+..|.+.++..+|..+.+++.- .++.-|-.-.-.....
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHh
Confidence 0 011112344556777888888877665532 1222221111112222
Q ss_pred CC-------HHHHHHHHHHHHHcC-----------------------------------CCCCHHHHHHHHHHHHcCCCH
Q 036461 284 GY-------IVEAVELFRTLRILK-----------------------------------YELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 284 g~-------~~~a~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~g~~ 321 (369)
|+ ..-|.+.|+-.-..+ +..|......+.++++..|.+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh
Confidence 21 222333333221111 011111123467788889999
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.+|.++|-++....++.+......|.++|.+.++++-|..++-++
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999988877655534444455668999999999998887654
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.2e-09 Score=90.55 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=174.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.-+.+.|++.+|.-.|+...+.. |-+...|..|.......++-..|+..+.++.+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34667899999999999999876 4578899999999999999999999999999886 677888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHH-----------HHHHhcccHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLF-----------IGLFEIHQVERAFKLFDEM-QRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.|...++..+...++ |..+. ..+..........++|-++ ...+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999998765321 00000 1112222333444455444 344545788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH-HHHHHHHHHHHhcCchHHHHHHHH
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV-VTYNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
+++|...|+.++... |.|...||.|...+....+.++|+..|+++++. .|+. .+...|.-+|...|.|++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999876 668889999999999999999999999999885 5654 466778889999999999998876
Q ss_pred Hh
Q 036461 365 DM 366 (369)
Q Consensus 365 ~m 366 (369)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 54
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=2.1e-07 Score=88.31 Aligned_cols=307 Identities=10% Similarity=-0.016 Sum_probs=191.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCC--C----CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDEN--I----NPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV--- 130 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 130 (369)
........+...|+++++...+......- . .+. ......+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 33445556667889999988888775421 0 111 112223345566789999999999887763111121
Q ss_pred -hhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC--c
Q 036461 131 -VSFNVIMNELCKNGKMDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCK--H 198 (369)
Q Consensus 131 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 198 (369)
...+.+...+...|++++|...+++.... |. .........+...+...|+++.|...+++.... +.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 23445566677889999999888887643 11 111234455667788899999999988876542 211 1
Q ss_pred -hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC--CCC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCcCHH
Q 036461 199 -NVFSYSILINGYCKNKEIEGALSLYSEMLSKG--IKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTW 271 (369)
Q Consensus 199 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 271 (369)
....+..+...+...|++++|...+.+..... ..+ ....+..+.......|+++.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334455666777899999998888876531 111 23344456667778899999998888775421 111111
Q ss_pred H----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHhcccC----Cccc-C
Q 036461 272 A----YRTFIDGLCKNGYIVEAVELFRTLRILKYELD---IRAYNCLIDGLCKSGRLKIAWELFRSLPRG----VLIA-D 339 (369)
Q Consensus 272 ~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~ 339 (369)
. ....+..+...|+.+.|...+........... ...+..+..++...|++++|...++++... +..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 01122444567889998888776553211111 111345677888999999999999887652 2222 2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 340 VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..+...+..++.+.|+.++|...+.+..+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888999999999999887653
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.6e-09 Score=86.80 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=160.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
....+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+++..+.. +-|......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 3445678888999999999988887 6678899999988888888889999998888863 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH---------HHHHhCCChhHHHHHHHH-HHHcCCCccHHHHHHHHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM---------NELCKNGKMDEASRLLEL-MIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~ 174 (369)
|...|.-..|.+.++..+...++ . .|.... ..+.....+....++|-+ ....+..+|+.+...|.-.
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~--y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPK--Y-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCcc--c-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 88888888899998888764211 0 000000 011111122333444433 3444444677777788888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcccHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 253 (369)
|.-.|++++|...|+.++... |.|...||.|...+....+.++|+..|.+.++. .|+. .+...|..+|...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 888888888888888888775 667778888888888888888888888888875 4443 355567777888888888
Q ss_pred HHHHHHHHHH
Q 036461 254 AFKLFDEMQR 263 (369)
Q Consensus 254 a~~~~~~~~~ 263 (369)
|...|-.++.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 94
>PLN02789 farnesyltranstransferase
Probab=99.21 E-value=8.1e-08 Score=77.78 Aligned_cols=214 Identities=13% Similarity=0.035 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++..+-..+...++.++|+.+.+++++.+ |.+..+|+....++...| ++++++..++++...+ +.+..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 45566666777788889999999988876 455667777777777777 5788888888888764 33666777
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 100 SLIHGFCYANDW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 100 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
....++.+.+.. ++++.+++++++...+ +..+|.....++...|+++++++.++++++.+.. +..+|+.....+.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 666556666653 6678888888776533 7778888888888888888888888888887643 66666666555544
Q ss_pred c---CCh----HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 178 T---GRV----NRAEELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 178 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
. |.. ++.+.+..++.... +.+...|+.+...+... +...+|...+.+....++. +......|+..|.
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 4 222 35566665655554 55666776666666552 2344566666665554322 4445555555554
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=5.9e-07 Score=70.45 Aligned_cols=285 Identities=11% Similarity=0.028 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchh-hHHHHHHHHHhcCChHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV-TYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 80 (369)
+|+.-|...++.+ |.+-.++..-...|...|+...|+.=+.+..+. +||.. .-..-...+.++|.+++|.
T Consensus 56 DALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 56 DALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred HHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHH
Confidence 3555555555432 233334444556888999999999999999884 57643 3344566788999999999
Q ss_pred HHHHHhHhCCCCCC--HHh------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh
Q 036461 81 ELFLKMKDENINPN--VVT------------YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (369)
.=|+.+++.....+ ... ....+..+...|+...|+..+..+++. .+.+...+..-..+|...|++
T Consensus 127 ~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 127 ADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcH
Confidence 99999988632111 111 123344566789999999999999986 456888899999999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHH-HH---HH---H------HHHHhhc
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVF-SY---SI---L------INGYCKN 213 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~---~~---l------~~~~~~~ 213 (369)
..|+.-++...+... .+..++.-+-..+...|+.+.++...++..+.+ |+-. .| -. + +......
T Consensus 206 k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888877753 356666677888899999999999999998774 4322 22 11 1 2234457
Q ss_pred CChHHHHHHHHHHHhCCCCCcHH---hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVV---IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
+++.++++..+...+..+..... .+..+-.++...+++.+|++...++++.. +.|..++..-..+|.-...++.|+
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHH
Confidence 78888888888888875442232 34456677788899999999999998853 335888888899999999999999
Q ss_pred HHHHHHHHcC
Q 036461 291 ELFRTLRILK 300 (369)
Q Consensus 291 ~~~~~~~~~~ 300 (369)
.-|+.+.+.+
T Consensus 362 ~dye~A~e~n 371 (504)
T KOG0624|consen 362 HDYEKALELN 371 (504)
T ss_pred HHHHHHHhcC
Confidence 9999998775
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=6.8e-08 Score=83.23 Aligned_cols=312 Identities=14% Similarity=-0.012 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
++++.+++..+.+ +-|+.+...+.--|+-.++.+.|.+...+..+.+ ...+...|..|.-++...+++..|+.
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~------~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALN------RGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 4677777777776 4555555666666777788888888888887764 24567778888888888888888888
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc--
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-- 159 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 159 (369)
+.+..... .+.|......-++.-..-++.++++.....+... .+ +..... ..++-....+....+.-.
T Consensus 535 vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 535 VVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccCcc
Confidence 88777654 1112222222223333356666666655554431 00 000000 000001111111111000
Q ss_pred CCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 160 GVRPNAFVYNTLMDGFCL---TGRVNRAEELFVSMESMGCK--HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
.......++..+...... .-..+..+..+......... .....|......+.+.++.++|...+.+..... +..
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~ 683 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLS 683 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhh
Confidence 011112222222222111 11111111111111100000 012235556666777777777777777766653 335
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCCCHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVE--LFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~ 312 (369)
...|......+...|..++|.+.|......+ |-++.....+..++.+.|+..-|.. ++..+.+.+ +.+...|..+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 5566666677777788888888887777653 2356677777778888877666666 777777776 66778888888
Q ss_pred HHHHcCCCHHHHHHHHHhccc
Q 036461 313 DGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~ 333 (369)
..+.+.|+.++|.+.|....+
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 888888888888887776654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3e-08 Score=75.98 Aligned_cols=293 Identities=15% Similarity=0.116 Sum_probs=206.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV-IMNE 139 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 139 (369)
.-+.+.+.-+.+..++++|++++..-.++. +.+......|..+|....++..|-..++++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 346777777888899999999998887763 337778888999999999999999999999775 455555543 3567
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAF--VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
+.+.+.+..|+++...|.+. ++.. ....-.......+++..+..++++....+ +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 78899999999999988653 2222 22222223456788889999988877543 4455556666678899999
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-------------CHH--------HHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-------------DTW--------AYRTF 276 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l 276 (369)
.|.+-|+...+-+.--....|+..+ +..+.++++.|++...+++++|++. |.. .-..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999999864443456676554 4556789999999999988876432 211 11222
Q ss_pred H-------HHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 277 I-------DGLCKNGYIVEAVELFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 277 ~-------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
+ ..+.+.|+++.|.+.+-.|... ....|+.+...+.-.-. .+++.+..+-+.-+...++ ....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 2 3345778999998888777522 22457777766654322 3555555555555555543 45789999999
Q ss_pred HHHhcCchHHHHHHHHH
Q 036461 349 ALCADGKMDKARDLFLD 365 (369)
Q Consensus 349 ~~~~~g~~~~A~~~~~~ 365 (369)
.|++..-++-|-.++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 99999888888777643
No 98
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=1.7e-07 Score=75.87 Aligned_cols=214 Identities=12% Similarity=0.033 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
+..+-..+...+..++|+.+..++++..+ -+..+|+....++...| ++++++..++.+.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33344445555666677777766666532 23445554444555555 4566666666666654 234445554444444
Q ss_pred hcCCh--HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc---ccH
Q 036461 177 LTGRV--NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI---HQV 251 (369)
Q Consensus 177 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 251 (369)
+.|+. +++..+++.+.+.+ +.+..+|+....++...|+++++++.+.++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 45542 45566665665554 445556666666666666666666666666665443 444444444333332 111
Q ss_pred ----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 252 ----ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN----GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 252 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
++.......++... +-|...|+.+...+... +...+|..++.+....+ +.+...+..|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 23444444444432 22444454444444442 22334555555544432 3344455555555543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=1.2e-06 Score=83.12 Aligned_cols=301 Identities=13% Similarity=0.024 Sum_probs=189.6
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCC--hhhHHHHHH
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGV------QPN--VVSFNVIMN 138 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 138 (369)
.......|+++.+..+++.+.......++.........+...|+++++..++......-. .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344555678887777776653221111233334455566778999999999988754311 111 112223344
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---KH--NVFSYSILING 209 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 209 (369)
.+...|++++|...++...+.-...+ ....+.+...+...|++++|...+.+...... .+ ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56678999999999998876321112 13445566777889999999999988764310 11 12345566777
Q ss_pred HhhcCChHHHHHHHHHHHhC----CCC--C-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CCc--CHHHHHHHHH
Q 036461 210 YCKNKEIEGALSLYSEMLSK----GIK--P-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAA--DTWAYRTFID 278 (369)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 278 (369)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887653 211 1 12334455666777899999999998875421 112 2334445666
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHcCCCHHHHHHHHHhcccCCcccC---HHHHHHHHHH
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYEL-DIRAY-----NCLIDGLCKSGRLKIAWELFRSLPRGVLIAD---VVTYNIMIHA 349 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 349 (369)
.+...|++++|...++.+....... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999998886431111 11111 1122445568999999999877654321111 1124567778
Q ss_pred HHhcCchHHHHHHHHHhh
Q 036461 350 LCADGKMDKARDLFLDME 367 (369)
Q Consensus 350 ~~~~g~~~~A~~~~~~m~ 367 (369)
+...|++++|...+++..
T Consensus 701 ~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 701 QILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 899999999999988764
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=1.6e-08 Score=86.51 Aligned_cols=239 Identities=17% Similarity=0.113 Sum_probs=189.1
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+|-...-..+...+...|-...|+.+|+++ ..|..++.+|...|+..+|..+..+..+. +|+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d 456 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPD 456 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCc
Confidence 4455556677888999999999999999974 45788899999999999999999888774 689
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
+..|..++.......-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +....+|..+..+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHH
Confidence 999999988887777788898888776432 22223333445789999999999988875 4577889999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (369)
..+.++++.|.+.|....... +.+...|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|-..+....+.|.++.|
T Consensus 529 ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 999999999999999998875 6677899999999999999999999999999976 33566677777778899999999
Q ss_pred HHHHHHHHHcC-CCcCHHHHHHHHHHH
Q 036461 255 FKLFDEMQRHG-VAADTWAYRTFIDGL 280 (369)
Q Consensus 255 ~~~~~~~~~~~-~~~~~~~~~~l~~~~ 280 (369)
++.+.++.... ...|..+...++...
T Consensus 607 ~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 607 IKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 99999876521 112444444444443
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.12 E-value=2.7e-06 Score=70.89 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGYIVEAVELFR 294 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 294 (369)
.+.....+.++...-..--..+|..++....+....+.|..+|.++.+.+..+ +.....+++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44445555555543222123356677777778888999999999998876666 5556667776555 788899999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC--HHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 295 TLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD--VVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
--.+.- ..++......+.-+.+.++-..|..+|++....++.|+ ..+|..++.--..-|+...++++-+++.
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 766542 34555556778888889999999999999988755554 4689999988888899999888877654
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.11 E-value=1.4e-07 Score=86.46 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=173.6
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVR---PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFS 202 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (369)
+-+...|...|......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 335567888888888889999999999888753 111 123467777777777888888889999988763 34566
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLC 281 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 281 (369)
|..|...|.+.+..++|.++++.|.++ +.-....|...+..+.+..+-+.|..++.++++.=.. -........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888888999999999999999999886 2246678888888888888889999999888875211 13445666677777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH--HHHHHHHHHHHhcCchHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV--VTYNIMIHALCADGKMDKA 359 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 359 (369)
+.|+.+.+..+|+...... |--...|+.+++.-.++|+.+.+..+|+++...++.|.. ..|...+..--..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8899999999999888654 557788999999999999999999999999888777654 3555555555555665443
Q ss_pred H
Q 036461 360 R 360 (369)
Q Consensus 360 ~ 360 (369)
.
T Consensus 1691 E 1691 (1710)
T KOG1070|consen 1691 E 1691 (1710)
T ss_pred H
Confidence 3
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.11 E-value=2.4e-07 Score=85.00 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=94.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|...|..+...++.+.|.+++++++..-...- -..-...|.+++..-..-|.-+...++|+++.+. -..-.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 3334555555555555555555555555544320000 0001123444444444444445555555555443 11123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGF 175 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 175 (369)
.|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 3444555555555555555555555443 1223444555555555555555555555554443110 0112222233333
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 232 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (369)
.+.|+.+++..+|+-..... |-....|+..+..-.++|+.+.+..+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 44555555555555544432 333444555555555555555555555555554433
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=1.3e-08 Score=87.01 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=136.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK 212 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (369)
-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+..+. +|++..|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445566666777777777776543 3455667777777777777777776663 6777777777766666
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 66666777666654432 11112222233567777777776655543 23455666666666777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|....... |.+...||.+..+|.+.|+-.+|...+++..+.+ .-+...|...+.....-|.+++|++.+.++.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77766554 4456677777777777777777777777777655 3345566666666777777777777776664
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=5.8e-08 Score=76.35 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=121.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch---hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+..+..+...+.+.|+++.|+..|+++.... |.++ .++..+..++...|++++|+..++++.+.... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-H 103 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-C
Confidence 45567777778888888888888888887765 2222 46677788888888888888888888764211 2
Q ss_pred H---HhHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 95 V---VTYNSLIHGFCYA--------NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 95 ~---~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
. .++..+..++... |++++|.+.++.+....+. +...+..+..... .. ...
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~------- 165 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL------- 165 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH-------
Confidence 2 2344455555543 6677888888887765321 2222221111100 00 000
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
......+...+.+.|++++|...++.+.... .+.....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0111245667889999999999999987663 1234567888999999999999999998888765
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.06 E-value=3.1e-07 Score=83.01 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=117.5
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.+..+|..|+..+...+++++|+++.+...+.. |.....|..+...+.+.++..++.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 3456688889998889999999999998777754 33455566666667777765554444
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
.++.......++.....++..+... .-+...+..++.+|-+.|+.+++..+|+++++.. +-|+.+.+.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 2333333444554444445555543 2344577788888888899999999999988887 55788888888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
... +.++|.+++.++... +...+++..+..+|.++...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888 888888888877643 44444556666666666554
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.5e-06 Score=75.38 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=182.1
Q ss_pred HHHHHHHHcCCC--cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 5 ALFMKLRVFGCE--PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 5 ~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
++.+...+.+++ -|++.....+.++...+-+.+-+++++++.-.+.. +..+...-+.|+-...+ -+..+..++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQnLLiLtAik-ad~trVm~Y 1042 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQNLLILTAIK-ADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhhhHHHHHhh-cChHHHHHH
Confidence 455555555433 35566666777787888888888888887755432 12334444555544443 345556666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
.+++...+.+ + +...+...+-+++|..+|++.- .+......++. ..+..+.|.++-++..
T Consensus 1043 I~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYDAP-D------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCCch-h------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----
Confidence 6666554221 2 2344555666777777777653 23344444443 2344555555444432
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....++.-.|... +.|+
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 4556777888888888888877766442 356677888888888888888888877777665444433 4677
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
-+|++.++..+.+.++ ..|+......+..-|...|.++.|.-+|... ..|..|...+...|++.
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 7777777766655543 2366666666666677777776666655432 23444445555555555
Q ss_pred HHHHHHHhcc------------------------cCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 323 IAWELFRSLP------------------------RGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 323 ~a~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.|...-+++. ..++.....-..-++..|...|-+++-+.+++.
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5544433332 112222333445566666666777776666653
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.3e-06 Score=72.55 Aligned_cols=327 Identities=16% Similarity=0.088 Sum_probs=221.3
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-HHhHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN-VVTYNSLIHGF 105 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 105 (369)
.+.+..|+++.|+..|-..+..+ |+|...|..-..+|.+.|++++|++=-.+-.+. .|+ +.-|.....++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAAL 80 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHH
Confidence 45678899999999999999987 678999999999999999999998876666654 444 56789999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---C--------------C-----------------------
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---G--------------K----------------------- 145 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--------------~----------------------- 145 (369)
.-.|++++|+.-|.+-++.. +.+...+..+..++... + +
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999887753 22444444444443111 0 0
Q ss_pred --------hhHHHHHHHHHHH--------c-------CCCc----------------------cHHHHHHHHHHHHhcCC
Q 036461 146 --------MDEASRLLELMIQ--------I-------GVRP----------------------NAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 146 --------~~~a~~~~~~~~~--------~-------~~~~----------------------~~~~~~~l~~~~~~~~~ 180 (369)
.....+..-.+.. . +..| -..-...++++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 0000000000000 0 0011 01123456667777777
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH-------HHHHHHHhcccHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN-------TLFIGLFEIHQVER 253 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 253 (369)
+..|++.+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..++.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888777664 45555667777788888887777777766665432 222222 23345666778888
Q ss_pred HHHHHHHHHHcCCCcCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWA-------------------------YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
++..+.+.+.....|+... ...-...+.+.|++..|+..|.+++... |.|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 8888877665433333211 1112445677899999999999998877 7788899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
....-+|.+.|.+..|+.-.+..++.+ ++....|..=..++....+|++|++.|.+-.+
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888877762 23445666666677778889999988887554
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=1.6e-07 Score=70.85 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=135.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|..+|+.+..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 667778888899888888888765443 5566677778889999999999999999998864 558899999999
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
+|.+.|+++.|..-|.+..+.. +-++..++.+...+.-.|+++.|..++......+ +-|..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999988863 3356678888888999999999999999888764 4578888889999999999999
Q ss_pred HHHHHHhccc
Q 036461 324 AWELFRSLPR 333 (369)
Q Consensus 324 a~~~~~~~~~ 333 (369)
|..+..+-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988766554
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=1e-07 Score=74.89 Aligned_cols=185 Identities=16% Similarity=0.047 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH--Hh
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VI 237 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 237 (369)
.....+..++..+...|++++|...++++.... +.+ ..++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456677788888999999999999999987764 222 246677888899999999999999999886432121 13
Q ss_pred HHHHHHHHHhc--------ccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 238 YNTLFIGLFEI--------HQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 238 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
+..+..++... |+++.|...++.+.+.. |+. .....+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44555555544 67888888888887753 332 22221111100 000 00 0112
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCc--ccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVL--IADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..+...+.+.|++++|...++++.+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456678889999999999998876522 12356788899999999999999998888764
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=3.7e-07 Score=68.90 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=132.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 036461 129 NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILIN 208 (369)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (369)
|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 667777888888888888777755432 4466666778889999999999999999998876 888999999999
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 288 (369)
+|.+.|+.+.|..-|.+..+..+. ++..++.+...+.-.|+.+.|..++......+ .-|...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999887433 66678888888888999999999999888764 3367777888888889999999
Q ss_pred HHHHHHHHH
Q 036461 289 AVELFRTLR 297 (369)
Q Consensus 289 a~~~~~~~~ 297 (369)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988776544
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=5.3e-07 Score=68.10 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCC--hHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF-CLTGR--VNRAE 185 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 185 (369)
++.+++...+++..... +.+...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33344444444444332 2244444444444444444444444444444443 22333444444332 33333 24444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444443 333444444444444444444444444444443
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.9e-06 Score=75.12 Aligned_cols=264 Identities=12% Similarity=0.141 Sum_probs=180.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... ..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 567888888888888888888776432 267778888888888888888888888777766565554 467778
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
|++.++..+..+++. -|+......+.+-|...|.++.|.-++.. +..|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 888888777655442 36777777788888888888888777654 34477777888888888888
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+.-++.. +..||..+..+|...+.+.-|. |-..++.....-+..++..|...|-+++.+.+++.....
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 77655432 5678888888887766655442 333334456667788899999999999999999877644
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC-Ccc------cCHHHHHHHHHHHHhcCchHHHH
Q 036461 300 KYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG-VLI------ADVVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 360 (369)
. +.....|..|.-.|.+- ++++..+.++-.-.. +++ -....|+-+...|.+-..|+.|.
T Consensus 1309 E-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 E-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred h-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 33455677777666654 334433333322111 111 12446777777777766666654
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=9.4e-08 Score=72.14 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=101.9
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG-FCYAN 109 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 109 (369)
..++.++++..++...+.+ |.|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAG 122 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 3677788888888888876 6788899999999999999999999999988864 4477788888776 46667
Q ss_pred C--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 110 D--WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 110 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
+ .++|..++++..+.+.. +..++..+...+...|++++|...|+.+.+.. +|+..-+
T Consensus 123 ~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 123 QHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 6 58999999999887533 67788888888899999999999999988875 3444333
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=9.3e-08 Score=68.27 Aligned_cols=95 Identities=6% Similarity=-0.156 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 101 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (369)
+..+...+...|++++|...|+.+...+ |.+...|..+..++...|++++|+..|+...... +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 4445555666666666666666666554 4455666666666666666666666666666542 3355556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..++...|++++|...|+..+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666554
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.7e-06 Score=73.06 Aligned_cols=163 Identities=13% Similarity=0.048 Sum_probs=104.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc---cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
+..+|..+.+.|.+..+.+-|.-.+-.|....+..... -.|+ ..-..........|.+++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 56789999999999888887766655554322100000 0111 23333444456778999999999887763
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH----------cC----
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ----------IG---- 160 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~---- 160 (369)
..|=..|-..|.|++|.++-+.--.. . =..||.....-+-..++.+.|++.|++... ..
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 33445667789999999887643221 1 234666667777777888888887765321 11
Q ss_pred -----CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 161 -----VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 161 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
-..|...|......+...|+.+.|+.++.....
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 123556677777777788888888888877654
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=2.5e-07 Score=66.10 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++.... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 3355566666666666666666666666666554 4556666666666666
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=1.9e-06 Score=78.09 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=162.1
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.+...+..|+..+...+++++|.++.+...+. .|-....|..+...+.+.++..++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 456788999999999999999999999977765 222444555555577777775555444 23
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
+.......++..+..++..+...+ -+...+..+..+|-+.|+.++|..+++++.+.. +.++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333334444544444555555543 355578889999999999999999999999987 77899999999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHH-----HhcccHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGL-----FEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
++|..++.+.+..-+ +..-|+.+...+ ....+.+.-..+.+.+... +..--..++..+-..|-..++++++.
T Consensus 166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999887521 111222222211 1223344444455554433 22333455666677888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+++.+.+.. +.|......++.+|.
T Consensus 244 ~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 9999999876 557777778887776
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.7e-06 Score=63.74 Aligned_cols=258 Identities=12% Similarity=0.035 Sum_probs=172.6
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
|+...|+ ++-+.-.|++..++..-....... .+...-..+.++|...|++.....- +... -.|....+..+.
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLA 79 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHH
Confidence 3334444 445556788988887666554432 3444444566778778876544433 2222 234444555555
Q ss_pred HHHHhCCChhHHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 138 NELCKNGKMDEAS-RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 138 ~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
......++.+..+ .+.+.+.......+......-...|...|++++|.+...... +......=+..+.+..+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 5444455544443 444555554444444444455567889999999999887632 333444445667778889
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
+-|...+++|.+- .+..|.+.|..++.+ .+....|.-+|+++-+. .+|++.+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999884 266777777777764 35688999999999875 468888999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHhcccC
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKI-AWELFRSLPRG 334 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 334 (369)
++.+.... ..++.++..++.+-...|...+ ..+.+.++...
T Consensus 230 L~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 230 LEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999876 5577888777777777776544 45666666654
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.6e-06 Score=63.22 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=62.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK---- 212 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 212 (369)
+..|...|++++|++...... +......=...+.+..+++-|.+.+++|.+. .+..+.+.+.+++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 334555555555555544311 1222222233444555555555555555543 233334434333332
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.+.+..|.-+|+++.++ .+|+..+.+....++...+++++|..+++..+.... .++.++..++.+-...|
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhC
Confidence 23455555555555543 344555555555555555555555555555554432 23444443333333333
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=2.7e-06 Score=75.86 Aligned_cols=164 Identities=11% Similarity=0.055 Sum_probs=110.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC-CCCCHHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVT 97 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 97 (369)
..+|..|...|+...+...|.+.|+++-+.+ +.+...+......|+...+++.|..+.-..-+.. ...-...
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 3478888888888888888888888888876 5677888888888888888888888743332221 0001122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH-HHHHHHHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA-FVYNTLMDGFC 176 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 176 (369)
|....-.|...++...|...|+......+ -|...|..++.+|.+.|++..|.++|.++.... |+. ..-....-..+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMEC 641 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHH
Confidence 33455566677788888888887776643 367778888888888888888888888777653 322 11112223345
Q ss_pred hcCChHHHHHHHHHHH
Q 036461 177 LTGRVNRAEELFVSME 192 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~ 192 (369)
..|.+.+|...+..+.
T Consensus 642 d~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLII 657 (1238)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5677777777766654
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=3.8e-09 Score=53.89 Aligned_cols=33 Identities=42% Similarity=0.709 Sum_probs=25.5
Q ss_pred CcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 335 VLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.||..+|++++.+|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777888888888888888888888877773
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=3.6e-06 Score=75.15 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|.+.|++..+.+ ..+..++......+++..+++.|..+.-...+..+ ...-...|....-.|...++...|..
T Consensus 510 RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 510 RAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHH
Confidence 5788888888876 56788999999999999999999998555444331 01112334456667778889999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhCCChhHHHHHHHHHHH
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI--MNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
-|+...+.. |-|...|..++.+|...|++..|.++|.+.... .|+. .|... ....+..|.+.++...+.....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988764 347889999999999999999999999988765 3332 33322 2334567888888888877654
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.7e-09 Score=53.93 Aligned_cols=34 Identities=56% Similarity=1.058 Sum_probs=32.0
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036461 13 FGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMA 46 (369)
Q Consensus 13 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 46 (369)
.|++||..+|+.+|.++++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999873
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=2.4e-07 Score=65.84 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLK 85 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (369)
.|+...+.. |.+......+...+.+.|++++|...|+.+...+ +.+...+..+..++...|++++|...++.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 3344556666677777777777777777777655 45667777777777777777777777777
Q ss_pred hHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 86 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
....+ +.+...+..+..++...|++++|...|+...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76653 445666666777777777777777777777665
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=9.6e-07 Score=78.99 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=121.1
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.++..+..|..+..+.|.+++|..+++.+.+. .|.+......++..+.+.+++++|...+++.....+ -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 566889999999999999999999999999986 344667788899999999999999999999998753 367778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 889999999999999999999843 4468889999999999999999999999997664 33334433
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=7e-06 Score=73.64 Aligned_cols=215 Identities=10% Similarity=0.007 Sum_probs=140.3
Q ss_pred hhhHHHHHHHHHhcCChHHHH-HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+.....+=.+...-|..++|- ++..++.+ ++..........+++.-+...... ...+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 344444444555556655553 33333221 233333333333333333333332 3446778888888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
...+.|.+++|..+++.+.+.. +-+......+...+.+.+++++|...+++..... +.+......+..++.+.|++++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHH
Confidence 8888888888888888888874 3356677778888888888888888888888775 5666777788888888888888
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .+....|+.++ +++..-..+++++.
T Consensus 173 A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 173 ADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 8888888887432 246778888888888888888888888887652 23444444333 23344445555554
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=9.3e-06 Score=61.16 Aligned_cols=189 Identities=14% Similarity=0.072 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 108 ANDWNEAKCLFIEMMDQ---G-VQPNVV-SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
..+.++..+++..++.. | ..++.. .|..++-+....|+.+.|..+++.+.+.- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45778888887777542 3 334443 34455666677788888888888877652 333333333333455678888
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888776 556666666666666677777888777777776 45588888888888888888888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC
Q 036461 263 RHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILK 300 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 300 (369)
-.. |.++..+..+...+.-.| +.+.+...|.+..+..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 653 334555555555544433 5667777888777653
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=8.9e-06 Score=71.40 Aligned_cols=315 Identities=16% Similarity=0.063 Sum_probs=179.3
Q ss_pred CHhHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-C----
Q 036461 18 NVFTYNTLIN--GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-N---- 90 (369)
Q Consensus 18 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~---- 90 (369)
|..+-..++. .|...|+.+.|.+-.+.+.. ...|..+...|.+..+.+-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 5555555553 46677999998887776543 468999999999988888777766665432 1
Q ss_pred ----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHH
Q 036461 91 ----INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAF 166 (369)
Q Consensus 91 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (369)
-.|+ .+=..........|.+++|..+|++... |..+=..|...|.+++|.++-+.-.+... ..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~ 859 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RN 859 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hh
Confidence 1111 2222334445678999999999998764 33455667788999999988775444322 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----------C---------CCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESM----------G---------CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
||.....-+...++.+.|++.|++...+ . -..|...|......+-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5666667777788899998888764211 1 01244556666666677888888888888765
Q ss_pred hC----------C----------CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--CC--cCHHHHHHHHHHHHhC
Q 036461 228 SK----------G----------IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--VA--ADTWAYRTFIDGLCKN 283 (369)
Q Consensus 228 ~~----------~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~ 283 (369)
.. | -.-|......|.+.|-..|++.+|...|.+..... +. .....-..+...+...
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 42 0 01133344455666666666666666665543210 00 0000000111111111
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh--------ccc--CCcccCHHHHHHHHHHHH
Q 036461 284 --GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS--------LPR--GVLIADVVTYNIMIHALC 351 (369)
Q Consensus 284 --g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~ 351 (369)
.+.-.|-++|++.- ..+...+..|-+.|.+.+|+++--+ ++. .....|+...+.-...+.
T Consensus 1020 ~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 11222222332211 0112233445566666666554211 111 122346777777777788
Q ss_pred hcCchHHHHHHHHH
Q 036461 352 ADGKMDKARDLFLD 365 (369)
Q Consensus 352 ~~g~~~~A~~~~~~ 365 (369)
...++++|..++-.
T Consensus 1092 ~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCL 1105 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888777654
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.79 E-value=5.7e-05 Score=63.30 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-DIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 251 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
.+.....++++... ...| .-+|..++..-.+..-+..|..+|.++.+.+..+ ++.+.++++.-+| +++...|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44445555555442 2223 3356677777778888999999999999876666 6777788888777 58899999999
Q ss_pred HhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 329 RSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+--.+. ...++..-...+..+.+.|+-..|+.+|++...
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 986664 233555556777888888988888888888754
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=9.5e-06 Score=70.45 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 251 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (369)
+.+......|.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444555666777777777666542 233345666667777777777777665432 133445566777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
+.|.++-.+... .......|..-..-+-+.|++.+|.++|
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 777666554432 2223334444444455556555555554
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.9e-05 Score=57.43 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=126.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..+.++.++++..+....+.. . ..++. ..+..++-+....|+.+.|...++.+.+. .|-+..+-..-...+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~-~-~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG-A-LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc-c-cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 356677777777666543211 0 12333 23455666667778888888888887765 33333333333334455688
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|+++++.+++.+ +.|..++..-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888888775 346666666666666777777887777777765 456788888888888888888888888888
Q ss_pred HHhcCCCchHHHHHHHHHHHhhc---CChHHHHHHHHHHHhCC
Q 036461 191 MESMGCKHNVFSYSILINGYCKN---KEIEGALSLYSEMLSKG 230 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 230 (369)
+.-.. |.++..+..+...+.-. .+.+.+.++|.+.++..
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 87654 45555555565555433 35666777777777753
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=1.8e-06 Score=61.28 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=71.1
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++....+ +.+...+..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345556667777777788888888887776653 3466777777777777778888887777776653 33556666677
Q ss_pred HHHHhCCChhHHHHHHHHHHHcC
Q 036461 138 NELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.++...|++++|...++...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 77777777777777777777653
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=2e-05 Score=65.16 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=113.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
....+...|+++.|+..++.+.... |.|+..+......+.+.++..+|.+.++++....+. .....-.+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCC
Confidence 3445667889999999999988764 566777777888899999999999999999987332 25566678888999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+.+|+.++++..... +.|+..|..+.++|...|+..++.....+ .+...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHH
Confidence 999999999888764 56888999999999999988887765544 34557888888888877
Q ss_pred cccC
Q 036461 331 LPRG 334 (369)
Q Consensus 331 ~~~~ 334 (369)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7664
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=7.4e-05 Score=61.91 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
...+...|+++.|+..++.++... +-|+.........+.+.|+.++|.+.++++.... +......-.+..++.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 334455666666666666666542 3355555555666666666666666666666553 22244455566666666666
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
.+|+.+++....... .|+..|..|.++|...|+..++.....+..
T Consensus 391 ~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666665532 366666666666666666666665555444
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=4.4e-06 Score=59.96 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD--IRAYNCL 311 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 311 (369)
.|..++..+ ..++...+...++.+.+... .+ ......+...+...|++++|...|+.+......++ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 36777777777777776532 22 22334455677788888888888888887642222 2244556
Q ss_pred HHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
...+...|++++|+..++..... ...+..+.....++.+.|++++|+..|++-
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888775443 234556777888888888888888888753
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=4.9e-05 Score=66.24 Aligned_cols=301 Identities=18% Similarity=0.125 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHH
Q 036461 23 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 102 (369)
Q Consensus 23 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (369)
...|..|....+|++|+.+-+.. + .|.-...-...++.+...|+-++|-++- .+ +-.. ..-+
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~------~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laai 622 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---G------HPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAI 622 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---C------ChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHH
Confidence 44566777778888888775532 2 1222333444555666666666665431 11 1111 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------CCChhHHHHHHHHHHH---------cC
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK-------------NGKMDEASRLLELMIQ---------IG 160 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~---------~~ 160 (369)
+.|.+.|.+..|.+....-.. +..|......+..++.+ ..++++|.+.|+.--. ..
T Consensus 623 qlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence 666777766666554321111 11233333333333333 3333333333322110 01
Q ss_pred CCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 161 VRPNAFVY-NTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 161 ~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
.+..+.+. .....-+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+...+. -..-|.
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccch
Confidence 11111111 122334445556666655543322 123345666778899999999998887643 344577
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.+...|...|+++.|.++|-+. ..++..+..|.+.|+|+.|.++-.+.. +.......|-.-..-+-++|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhc
Confidence 8889999999999999998543 245667888999999999999887665 22334445555445555666
Q ss_pred CHHHHHHHHHhccc----------CC-----------cccC--HHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 320 RLKIAWELFRSLPR----------GV-----------LIAD--VVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 320 ~~~~a~~~~~~~~~----------~~-----------~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
++.+|.++|-.+.. .| ..|+ ..|...+..-+...|+.+.|.+.|-+
T Consensus 839 kf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred chhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 66555554432211 00 1112 23445556666677777777766544
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=2.5e-06 Score=70.73 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+.++.. +.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555667777777777777653 33 33345666666666667777777666542 3355566666666677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..+..+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777777777777654 44555777777777777777777777766654
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=6.5e-06 Score=59.10 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 98 (369)
.|..++..+ ..++...+...++.+....+. .+........+...+...|++++|...|+.+......|+ ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~----s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS----SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 344444444 356666666666666655410 001123333445555666666666666666665431111 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..+...+...|++++|+..++..... ......+.....++...|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555566666666666666543222 22333444555566666666666666554
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=9.3e-06 Score=67.43 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 245 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (369)
.....++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++.+.... -+...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344566777778899999999999999874 44 445578888888999999999999997643 3667777778889
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
.+.++++.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999863 44667999999999999999999998887654
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=1.2e-06 Score=56.10 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHH
Q 036461 283 NGYIVEAVELFRTLRILKYE-LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARD 361 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (369)
.|+++.|+.+++++...... ++...+..++.+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57888899999888876421 2455666688889999999999999988 33221 233455566888899999999998
Q ss_pred HHHH
Q 036461 362 LFLD 365 (369)
Q Consensus 362 ~~~~ 365 (369)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=8.6e-06 Score=53.68 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
++..+...+...|++++|+..++.+.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 35556667777788888888888777654 3344667777777777777888888777776653 334456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+...+...|+++.|...+......
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777777776543
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0015 Score=58.52 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=144.1
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhH-HHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTY-TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 107 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (369)
....+++..|+.-..++.+.. ||.... ..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 345678889999999888865 443222 22233456789999999888877665444 78888888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-------
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR------- 180 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 180 (369)
.++.++|..+|++.... -|+......+..+|.+.+++.+-.+.--++.+. .+.+...+=.++......-.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998875 466777777888888888877666555555543 23334333334443333211
Q ss_pred ---hHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhhcCChHHHHHHH-HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 181 ---VNRAEELFVSMESMGCKH-NVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 181 ---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
..-|.+.++.+...+.+. +..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234555666665543111 1111222233455678888888888 33444333334444455666777788888888
Q ss_pred HHHHHHHHcC
Q 036461 256 KLFDEMQRHG 265 (369)
Q Consensus 256 ~~~~~~~~~~ 265 (369)
++..++...+
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 8888888765
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=1.2e-05 Score=56.64 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
....+...+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|.......+ -++..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444444445555555444444331 11333444444444444455555555444444432 23444444444444
Q ss_pred hCCChhHHHHHHHHHHH
Q 036461 142 KNGKMDEASRLLELMIQ 158 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~ 158 (369)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555444444443
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=1.6e-05 Score=56.13 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=79.7
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
....-.+...+...|++++|.++|+.+...+ +.+..-|..+..++-..|++++|+..|......+ +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444455666778899999999999888764 3466777888888889999999999999998887 6788888888999
Q ss_pred HHcCCCHHHHHHHHHhcccC
Q 036461 315 LCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~ 334 (369)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=3.4e-05 Score=53.33 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCCHHh
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVT 97 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 97 (369)
.++..+...+.+.|++++|...|+.+....+. .+.....+..+..++.+.|+++.|...|+.+..... +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34566667777777777777777777765410 011134566677777777777777777777765321 112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..+..++.+.|++++|...++++...
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666777777777777777777665
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=1.4e-05 Score=52.57 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=40.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++...... +.+..++..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555544432 1222334444444444455555555554444432 2233344444444444444
Q ss_pred HHHHHHHHHhcc
Q 036461 321 LKIAWELFRSLP 332 (369)
Q Consensus 321 ~~~a~~~~~~~~ 332 (369)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.0015 Score=53.32 Aligned_cols=265 Identities=14% Similarity=0.004 Sum_probs=156.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.....+.+..++..|+..+..+.+.. +.+...|..-+..+...+++++|+--.+.-.+... -....+...-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~ 125 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQ 125 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhh
Confidence 33445666677778888888777765 44566666666666667777776665554433210 01112222223
Q ss_pred HHHhcCCHHHHHHHH---------------HHHHhcC-CCCChhhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCccHH
Q 036461 104 GFCYANDWNEAKCLF---------------IEMMDQG-VQPNVVSFNVI-MNELCKNGKMDEASRLLELMIQIGVRPNAF 166 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~---------------~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (369)
++...++..+|...+ +...... -+|...++..+ ..++...|+.++|...--..++.. ..+..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhH
Confidence 333333333333222 2222111 12333344333 345667788888888887777764 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHH-------------HHHHHHHHhhcCChHHHHHHHHHHHhC---C
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFS-------------YSILINGYCKNKEIEGALSLYSEMLSK---G 230 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 230 (369)
....-..++...++.+.+...|.+....+ |+-.. +..-..-..+.|.+..|.+.|.+.+.. +
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 33333345556778888888888887664 33221 222233456788999999999998875 3
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
..|+...|.....+..+.|+..+|+.-.+...+.+. .-...+..-..++...++|++|.+-++...+..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566677777788889999999988888776421 112233344456777889999999998887654
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=3e-05 Score=64.79 Aligned_cols=122 Identities=10% Similarity=0.114 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHH
Q 036461 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR 274 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (369)
+.+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+=||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555566666666666666666666666654 121223344566666667776777777666666666666777777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS 318 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (369)
.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777776666666555445555554444444443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.25 E-value=0.0001 Score=50.91 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=11.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+..+..++...|+.++|...++++..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.25 E-value=0.00022 Score=57.62 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCch--H
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMES----MGCKHN--V 200 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 200 (369)
.|......|...+++++|...|....+. +-+. -...|.....+|.+ .++++|...+++... .| .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555566666677777777777665432 1111 12233333333333 366666666665532 22 222 2
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHHHHHhC----CCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-----c
Q 036461 201 FSYSILINGYCKN-KEIEGALSLYSEMLSK----GIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-----A 268 (369)
Q Consensus 201 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 268 (369)
..+..+...|... |++++|+..|++..+. + .+. ...+..+...+.+.|++++|..+|+++...... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 2344555555555 5666666666655442 1 111 123344455555566666666666555443211 1
Q ss_pred CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 269 DTW-AYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 269 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+.. .+...+-++...||...|...+++...
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 122223344445556666665555543
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.24 E-value=3.7e-05 Score=64.29 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=59.2
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.+......++..+....+.+.+..++-+....... ...-+.+..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~----~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC----SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc----ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 344444444455544445555555555554443210 0111233445555555555555555555555555555555
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.+++.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555555555444444444444444443333
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.9e-06 Score=43.93 Aligned_cols=32 Identities=47% Similarity=0.897 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN 129 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (369)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.24 E-value=0.0034 Score=56.36 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLIN--GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKA 79 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (369)
+|++-..++.+. .|+... ..++. .+.+.|+.++|..+++...... +.|..+...+-.+|...++.++|
T Consensus 27 kal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-------~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-------GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-------CCchHHHHHHHHHHHHHhhhhHH
Confidence 456666666654 344432 22333 3457788888887777666554 33667777777777778888888
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 036461 80 KELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 113 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (369)
..+|+..... -|+......+..+|.+.+++.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 8888877664 3455555556666666655544
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=6e-05 Score=60.55 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh-cCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+|..+++...+.+..+.|..+|.++.+.. ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 467777777777777888888888877543 3344555555544333 45666678888777665 45567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV---VSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
...+..+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777777654 22222 25666666666666666666666666554
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=0.00013 Score=58.74 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-IHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666777777777777777776432 2233444444443222 45566677777776665 44566666677777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 280 LCKNGYIVEAVELFRTLRILKYELDI---RAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+...|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777644 22222 36666666666777777777777666653
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.9e-06 Score=43.90 Aligned_cols=34 Identities=56% Similarity=0.966 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999873
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=4.2e-06 Score=53.65 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 249 HQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......++.++.+.|++++|+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555543221 1222333345555555555555555554 2111 11223333344555555555555555
Q ss_pred HH
Q 036461 328 FR 329 (369)
Q Consensus 328 ~~ 329 (369)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=3.4e-06 Score=43.30 Aligned_cols=32 Identities=34% Similarity=0.605 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=7.7e-05 Score=62.18 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=79.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.-...+...|+++.|++.|+++.+.+ +.+...|..+..++...|++++|+..++++.... +.+...|..+..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34566778899999999999999876 5667888889999999999999999999998863 346778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 036461 104 GFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
+|...|++++|...|++.+...
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988763
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.20 E-value=0.00064 Score=54.94 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCcc--
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVRPN-- 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-- 164 (369)
..|......|...+++++|...|.+.... +-+. -...|.....+|.+. ++++|...++...+. | .++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 45666666777777777777777766332 1111 112333444444333 777777777666542 3 222
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-----
Q 036461 165 AFVYNTLMDGFCLT-GRVNRAEELFVSMESM----GCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK----- 232 (369)
Q Consensus 165 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 232 (369)
...+..+...|... |++++|++.|.+.... + .+ -..++..+...+.+.|++++|..+|+++......
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 33555666667666 7777777777776432 2 11 1234556666777777777777777777664221
Q ss_pred CcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 233 PDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 233 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+.. .+...+.++...||+..|...+++....
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1111 2223344555667777777777776643
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=0.0016 Score=51.08 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY---NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+-.....+...|++++|.+.|+++.... |-+.... -.++.++.+.+++++|...+++.++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334344555556677777777777776642 2122222 34556666777777777777777665
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.18 E-value=0.0015 Score=51.21 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchh---hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTV---TYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
++..+......+.+.|++++|+..|+.+....+ -+.. ....++.++.+.++++.|...+++..+....-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 444455566777889999999999999999762 2222 335678889999999999999999987522211
Q ss_pred HHhHHHHHHHHHh--cC---------------C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 95 VVTYNSLIHGFCY--AN---------------D---WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 95 ~~~~~~l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
...+...+.+.+. .+ + ..+|+..|+++++. -|+. .-..+|...+.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~ 168 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLV 168 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHH
Confidence 2222222322221 11 1 12344444444443 1222 11223333222
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 155 LMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.+... -...-..+...|.+.|.+..|..-++.+.+.- .+........+..+|...|..++|..+...+
T Consensus 169 ~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 169 FLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22211 00111134555666777777766666665541 1223444555666666666666666655544
No 164
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.9e-06 Score=43.07 Aligned_cols=33 Identities=45% Similarity=0.602 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
.+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=9.3e-05 Score=61.72 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=65.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+...|+++.|+..|.++++.... +...|..+..++...|++++|+..++++++.. +.+...+..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44556677888888888877776443 55667777777777788888888777777753 33566677777777777888
Q ss_pred HHHHHHHHHHHHcC
Q 036461 287 VEAVELFRTLRILK 300 (369)
Q Consensus 287 ~~a~~~~~~~~~~~ 300 (369)
++|...|++.....
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888887777654
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=0.00042 Score=60.53 Aligned_cols=139 Identities=10% Similarity=-0.034 Sum_probs=85.0
Q ss_pred cCCCcCHhHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC--------ChHHH
Q 036461 13 FGCEPNVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG--------FVDKA 79 (369)
Q Consensus 13 ~g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a 79 (369)
.+.+.+..+|...+++..... +...|+.+|+++.+.+ |.+...+..+..++.... +...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 345778899999998865433 3668999999999977 334556665544443221 12233
Q ss_pred HHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 80 KELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
.+...+.... ..+.+...|..+...+...|++++|...+++.+..+ |+...|..+...+...|+.++|...+++...
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333332221 123344556655555555677777777777776653 4566666667777777777777777776666
Q ss_pred cC
Q 036461 159 IG 160 (369)
Q Consensus 159 ~~ 160 (369)
.+
T Consensus 482 L~ 483 (517)
T PRK10153 482 LR 483 (517)
T ss_pred cC
Confidence 53
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=0.00031 Score=52.09 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
.+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555556666666666666666655432221 2345555566666666666666666655542 2234444455555
Q ss_pred HHhCCCH
Q 036461 280 LCKNGYI 286 (369)
Q Consensus 280 ~~~~g~~ 286 (369)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.09 E-value=0.00018 Score=53.18 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555554321111 123444455555555555555555555544
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0015 Score=53.26 Aligned_cols=266 Identities=12% Similarity=0.001 Sum_probs=166.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.......+.+..++..|+..+...++.. +.+...|..-+..+...+++++|.--.+.-++.... ........-+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 3344455677788999999999998874 336667777777777888888887777665543211 12233334444444
Q ss_pred CCChhHHHHHHHHH---------------HHcCC-CccHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 143 NGKMDEASRLLELM---------------IQIGV-RPNAFVYNTL-MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 143 ~~~~~~a~~~~~~~---------------~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
.++..+|.+.++.- ..... +|...++..+ ..++.-.|+.+.|.+.--.+.+.. ..+....-.
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHh
Confidence 44444444433311 11111 2333344333 245667899999998888887764 333333333
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH-------------HHHHHHhcccHHHHHHHHHHHHHc---CCCcC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT-------------LFIGLFEIHQVERAFKLFDEMQRH---GVAAD 269 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 269 (369)
-..++...++.+.+...|++.+..+ |+...-.. =..-..+.|.+..|.+.+.+.+.. +..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3344556788999999999988864 33322111 122345778899999999988764 34455
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
...|.....+..+.|+..+|+.--+.....+ +.-...+..-..++...+++++|.+-|++..+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777777888999999999888888653 112233344445667778889998888887664
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=0.0005 Score=50.98 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
...+..+...+...|++++|...|++..+....+ ....+..+..++.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 4456677777888888888888888887653222 2456777888888888888888888888876332 455566667
Q ss_pred HHHHhcccHHHHHH
Q 036461 243 IGLFEIHQVERAFK 256 (369)
Q Consensus 243 ~~~~~~~~~~~a~~ 256 (369)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666555443
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=3.4e-05 Score=47.10 Aligned_cols=61 Identities=26% Similarity=0.185 Sum_probs=42.5
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHH
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYN 344 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (369)
...|++++|...|+.+.... |.+..++..++.+|.+.|++++|..+++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 45677888888888877665 457777777788888888888888888887765 44533333
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.07 E-value=0.00016 Score=47.45 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCChhhHH
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYAN--------DWNEAKCLFIEMMDQGVQPNVVSFN 134 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (369)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555666778888888888887777 778888887777666542 2334455666666666666666666
Q ss_pred HHHHHHH
Q 036461 135 VIMNELC 141 (369)
Q Consensus 135 ~l~~~~~ 141 (369)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665544
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.06 E-value=0.00025 Score=52.36 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555444332111 112344444445555555555555544443
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.05 E-value=1.9e-05 Score=48.25 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=39.2
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
.+.|++++|+++|+++.... |.+...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888888888877765 456777777888888888888888888777765
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00044 Score=54.11 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYELDIRAYNC 310 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (369)
|...|..|...|...|+.+.|...|.+..+.. ++++..+..+..++..+. ...++..+++++...+ +.|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777776652 345666666665554332 3556777777777665 556667777
Q ss_pred HHHHHHcCCCHHHHHHHHHhcccC
Q 036461 311 LIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 311 l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777777777777777777777765
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.01 E-value=0.0025 Score=46.16 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=112.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 251 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (369)
..+..+.=+++...+-..+-.. ..|++..--.+..+..+.|+..+|...|++...--+..|......+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3344444444444433333332 25777777788888999999999999999988765566777888888888889999
Q ss_pred HHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 252 ERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
..|...++.+.+.... -++.....+.+.+...|.+..|...|+..... -|+...-......+.++|+.+++..-+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999988775311 12334566788888999999999999988876 56776666667778888887777655544
Q ss_pred cc
Q 036461 331 LP 332 (369)
Q Consensus 331 ~~ 332 (369)
+.
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 43
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00064 Score=53.23 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=66.4
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCChhhH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN---DWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
|.|...|-.|...|...|++..|...|.+..+. .++++..+..+..++..+. .-.++..+|+++.... +-+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 556777777777777777777777777777664 2345666655555544332 3556677777777653 2355566
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666667777777777777777777664
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.99 E-value=0.0036 Score=47.83 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+..+-.....+...|++.+|+..|+.+....+. .+--......++.++.+.|+++.|...+++..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455566677778888888888888776521 1122445666777777888888888888877654
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00018 Score=55.96 Aligned_cols=99 Identities=21% Similarity=0.212 Sum_probs=78.5
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
.-+.+.+++.+|+..|.+.++..+. |.+.|..=..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3466788999999999999987544 77778888889999999999998888888754 224668888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNC 310 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~ 310 (369)
+|++.|++.++. .|+..+|..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 999999988876 566555543
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00025 Score=46.54 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGV-QPNVVSFNVIMNELCKNG--------KMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +..+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445556666888888888888888888 788888888888776643 24456777888888888888888888
Q ss_pred HHHHHHh
Q 036461 171 LMDGFCL 177 (369)
Q Consensus 171 l~~~~~~ 177 (369)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.97 E-value=0.00036 Score=56.82 Aligned_cols=265 Identities=14% Similarity=0.104 Sum_probs=165.4
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHh--HhC--CC-CCCHHh
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKM--KDE--NI-NPNVVT 97 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~ 97 (369)
.-+++.|+....+.+|+...+.+ ..| ..+|..|..+|.-.+++++|+++...= ..+ |- .-...+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 46899999999999999999987 334 345677777888888999998864321 110 10 012223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHhCCC--------------------hhHHHHH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMM----DQGVQ-PNVVSFNVIMNELCKNGK--------------------MDEASRL 152 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 152 (369)
-..|...+--.|.+++|.....+-+ +.|-. .....+..+...|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 3345555666777887766543322 22211 123345556666665443 1233444
Q ss_pred HHHHHH----cCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCC-CchHHHHHHHHHHHhhcCChHHHHHH
Q 036461 153 LELMIQ----IGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSME----SMGC-KHNVFSYSILINGYCKNKEIEGALSL 222 (369)
Q Consensus 153 ~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (369)
|.+=++ .|-. .--..|..|.+.|.-.|+++.|+...+.-. +.|- .....++..+..++.-.|+++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 433221 1100 112356677777888899999987765432 2221 12345678888999999999999999
Q ss_pred HHHHHhC----CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 223 YSEMLSK----GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH-----GVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 223 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
|+..... |- .........|...|.-..++++|+.++.+-+.. +..-....+-++..++...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8876542 21 223345667888888888999999988764431 1112455777888999999999999888
Q ss_pred HHHHHH
Q 036461 293 FRTLRI 298 (369)
Q Consensus 293 ~~~~~~ 298 (369)
.+.-.+
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 776553
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.0016 Score=56.94 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=94.9
Q ss_pred CCchHHHHHHHHHHHhh--c---CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------ccHHHHHHHHHHHH
Q 036461 196 CKHNVFSYSILINGYCK--N---KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--------HQVERAFKLFDEMQ 262 (369)
Q Consensus 196 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 262 (369)
.+.+...|...+++... . ++...|..+|++.++..+. ....+..+..++... .+...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35677788887777543 2 3367899999999987433 334455444433322 12234444444433
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 263 RH-GVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 263 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
.. ..+.++..+..+.......|++++|...++++...+ |+...|..+...+...|++++|...++++...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32 133456677777777777899999999999999885 678899999999999999999999999988753
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=4.4e-05 Score=46.74 Aligned_cols=65 Identities=22% Similarity=0.131 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDE 89 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 89 (369)
++.+|..+...+.+.|++++|+..|++..+.+ |.++..|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999876 567888999999999998 799999999887763
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=5.8e-05 Score=45.54 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+...+.+.|++++|+..|+++.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777776665 345666666667777777777777777666553
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.0012 Score=45.04 Aligned_cols=91 Identities=16% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---CHHhHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYN 99 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 99 (369)
...++-..|+.++|+.+|++....+ .... ...+..+...+...|++++|+.++++..... +. +.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~ 79 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG------LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRV 79 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHH
Confidence 3444555566666666666665544 1111 2344455555555666666666666555431 11 111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
.+..++...|+.++|++++-...
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334445555555555554443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.0012 Score=44.97 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHH
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVIMNE 139 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 139 (369)
..+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3445566667777777777777777665433 334555666777777777777777777654211 011222233345
Q ss_pred HHhCCChhHHHHHHHHHHH
Q 036461 140 LCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (369)
+...|+.++|+..+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5666777777766655543
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00024 Score=55.30 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=65.3
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
-+.+.+++++|+..|.+.+.. .|-|...|..-..+|.+.|.++.|++-.+..+.... -...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777765 234666666777777777777777777777666532 234567777777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
|.+.|++.++. .|+-.+|..=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 77777777665 34444444333
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.0056 Score=46.78 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
...+-.....+...|++.+|.+.|+.+.... -+--......++.++.+.|+++.|...++++++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455556667788888888888877641 1122344556677777888888888888887765
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=6.7e-05 Score=45.28 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666554 33555666666666666666666666666554
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.013 Score=51.57 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=121.2
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH----------HHhcCCHHHHHHHHHHHHhcCC
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG----------FCYANDWNEAKCLFIEMMDQGV 126 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~ 126 (369)
.|.+..|..+.......-.++.|...|-+.... +.+.....|-.. -.--|++++|.++|-++-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588999999999888888888888888776543 122111111111 122478999999887775442
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
..+..+.+.|++-.+.++++.--.. .-..-...++.+...+.....|+.|.+.+...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3455667778887776666431110 00112456778888888888888888877654321 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+.++.+..++++-..+...+ +.+....-.+...+.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 345555555555544443332 224555566667777777777776655322 11 1 234455666666
Q ss_pred HHHHHHHHHHH
Q 036461 286 IVEAVELFRTL 296 (369)
Q Consensus 286 ~~~a~~~~~~~ 296 (369)
|.+|.++-++.
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=3e-05 Score=38.65 Aligned_cols=29 Identities=38% Similarity=0.774 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDEN 90 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (369)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=3.2e-05 Score=38.58 Aligned_cols=29 Identities=48% Similarity=0.841 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57778888888888888888888877665
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=0.00019 Score=43.85 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC-ChHHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK-EIEGALSLYSEML 227 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 227 (369)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|+..+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443 333444444444444444 3444444444443
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.022 Score=50.23 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=66.5
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCCCHHhHHHHHHHHHhcCC
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 110 (369)
-|++++|.++|-.+.+++ ..+..+.+.|++-...++++.--.. .-..-...|+.+...++....
T Consensus 747 ~g~feeaek~yld~drrD---------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred hcchhHhhhhhhccchhh---------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 466777777766655433 1234444555555555544331110 000112344555555555555
Q ss_pred HHHHHHHHHHHHh---------------------cCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH
Q 036461 111 WNEAKCLFIEMMD---------------------QGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 111 ~~~a~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
|++|.+.|..-.. ..++-+....-.+..++.+.|.-++|.+.|-+. +. | .
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----k 882 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----K 882 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----H
Confidence 5555554433210 112334445556666667777777666655432 21 1 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 036461 170 TLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
..+..|...++|.+|.++-++.
T Consensus 883 aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345566667777776665543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.76 E-value=0.00061 Score=53.87 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILK--YELDIRAYNCL 311 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l 311 (369)
..|......+.+.|++++|...|+.+++...... +..+..+..+|...|++++|...|+.+.+.. .+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444667888888888888887532211 3567778888888888888888888888652 11234555566
Q ss_pred HHHHHcCCCHHHHHHHHHhcccC
Q 036461 312 IDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 312 ~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+..+...|+.+.|..+|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888775
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00071 Score=55.15 Aligned_cols=129 Identities=14% Similarity=0.023 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH----HcCCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQ----RHGVA-ADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL----KY-ELDIR 306 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 306 (369)
.|..|...|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555556677777766554322 22211 12234566677777777888887777665432 21 11223
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccc----C-CcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 307 AYNCLIDGLCKSGRLKIAWELFRSLPR----G-VLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 307 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
...+|...|.-..+++.|+.++.+-.. . ........+.+|..+|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344556666666667777766654321 0 1122455677778888888888888776554
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.72 E-value=0.0014 Score=46.77 Aligned_cols=118 Identities=10% Similarity=-0.026 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCCCC------cHHh---HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 215 EIEGALSLYSEMLSKGIKP------DVVI---YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
+.++-.+.+.+.+..|..+ +..+ .-....-+...|++++|..+|.-+...+ +.+..-+..|..++...++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4455555666666655332 1122 2233444567899999999999887765 3467777888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+++|...|......+ ..|+..+.....++...|+.+.|...|+...+.
T Consensus 87 y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999998887766 456777778888999999999999999988874
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.0086 Score=43.50 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=96.3
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
+..+.=+++...+-..+-.. +.|+...-..|..+..+.|+..+|...|++...--..-|......+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33344445444333322222 3466666667777888888888888888887765445566667777777777888888
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 149 ASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 149 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
|...++.+.+.... .++.+...+.+.+...|.+.+|...|+...+. -|+...-......+.+.|+.+++..-+..+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888877765310 12233445667777788888888888887766 3555544444555666666555544444333
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.70 E-value=0.0013 Score=51.95 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYN 99 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 99 (369)
|...+....+.|++++|+..|+.+.+..+.. +-.+.++..+..+|...|++++|...|+.+.+.- -+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3333333344556666666666665544100 0002345555555556666666666666555421 111233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+...+...|+.++|..+|+++++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444555555666666666555544
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.66 E-value=0.0096 Score=42.78 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc-----CCcccCHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR-----GVLIADVVTY 343 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 343 (369)
....++..+...|++++|..+++.+.... |.+...+..++.+|...|+...|.+.|+++.+ .|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44455566666777777777777777665 55666777777777777777777777766532 4566666543
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.001 Score=49.59 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=54.6
Q ss_pred cHHhHHHHHHHHHh-----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 234 DVVIYNTLFIGLFE-----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 234 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
+..+|..++..+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 56666666666543 34555555556666666666666666666665543 1111 0001111000
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
-.-.+-+-|++++++|...|+-||.+++..++..+.+
T Consensus 114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0012345567777777777777777777777777743
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.63 E-value=0.02 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.0
Q ss_pred HHHHcCCCHHHHHHHHHhcccC
Q 036461 313 DGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+|.+.|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566677888888888887654
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.018 Score=44.45 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCC-----CCcccccch-----hhHHHHHHHH--HhcCChHHHHHHHHHhHh
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVVCKPNT-----VTYTTIIDGL--CKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 88 (369)
.|+.-+.++.+....++|..-++.....+.+ +-+.+.|+. ..-..++++. ...|+..+.+.-+..+..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 5666777888888888887776666554421 000011110 0111222221 223444444433333322
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH
Q 036461 89 ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
. ....+..+-.....+..+..|++-. ..+.+.++.++...+.+.-....+...++...+.++...
T Consensus 151 ~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 151 V--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred H--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 1 0112222222233344455554432 224456677777778888888888888887767778888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESMGCK-----HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
..+++...+.||.+.|...|++..+.... ....+.......+.-.+++..|...+.++...+.. +....|.-.-
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKAL 294 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKAL 294 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHH
Confidence 88888888889999999888877654222 23333334445566677888888888888776433 4444444444
Q ss_pred HHHhcccHHHHHHHHHHHHHcC
Q 036461 244 GLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
+..-.|+...|++.++.+....
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4555678888888888888753
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.0039 Score=46.63 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=66.3
Q ss_pred CccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH
Q 036461 162 RPNAFVYNTLMDGFCLT-----GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (369)
..+..+|..+++.+.+. |..+-....++.|.+.|+..|..+|+.|+..+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 34666777777766543 5566666667777777777777777777766543 2211 111
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+.+.... .-.+-+-|++++++|..+|+-||.+++..+++.+.+.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 123456788888999988988999999888888866654
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.58 E-value=0.011 Score=42.29 Aligned_cols=91 Identities=9% Similarity=-0.092 Sum_probs=73.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
...-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|+..|......+. -|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 334456789999999999998886544 666778888888899999999999988765542 355556678889999999
Q ss_pred HHHHHHHHHHHHH
Q 036461 286 IVEAVELFRTLRI 298 (369)
Q Consensus 286 ~~~a~~~~~~~~~ 298 (369)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998886
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0005 Score=49.44 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFN 134 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (369)
..+...++..+...|+++.|..+.+.+... -|.+...|..++.+|...|+...|.+.|+++.. .|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456777788888889999999999998876 366888999999999999999999998888743 48888776643
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.024 Score=43.78 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----CCcCHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----VAADTWAYRTF 276 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 276 (369)
+.+.++.++...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...+++..+.. +..+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456777777888999999999999998777788889999999999999999999999877532 22233333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHH
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNI 345 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (369)
...+.-++++.+|...+.++...+ +.++...|.-+-+..-.|+...|++..+.+... .|.+.+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 455667889999999999888776 556777777666777789999999999999886 444444443
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.00042 Score=43.57 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccC----C-cccC-HHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRG----V-LIAD-VVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.+++.+...|...|++++|+..|++..+. | -.|+ ..++..+..++...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555566666666666555554421 1 1121 345556666666666666666666654
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.041 Score=46.00 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHH
Q 036461 286 IVEAVELFRTLRILKYEL----DIRAYNCLIDG--LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKA 359 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (369)
+..-..+-+-+.+.|++| +...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....+|++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 344444444445556655 23344555443 4567888888765555544 578999999999999999999999
Q ss_pred HHHHHHhh
Q 036461 360 RDLFLDME 367 (369)
Q Consensus 360 ~~~~~~m~ 367 (369)
..++.++.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99988763
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.00019 Score=45.15 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
..+|+.+...+...|++++|++.|++..+.....+. -.|+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457899999999999999999999998864211111 1232 56788889999999999999999988754
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00064 Score=42.06 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=30.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.|.+.+++++|..+++.+...+ |.++..+.....++...|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555554 345555555555555555555555555555543
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00093 Score=41.33 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+.+.++++.|++.++.+...+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777776665 445666666666677777777777777766654
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.48 E-value=0.044 Score=45.43 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIG---VRPNAFVYNTLMDGFCL---TGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
+...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|++++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777788888888888877652 11122222334445555 7788888888877554444677777777
Q ss_pred HHHHHhh---------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc-HH---HHHHHH---HH-HHHcC---
Q 036461 206 LINGYCK---------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ-VE---RAFKLF---DE-MQRHG--- 265 (369)
Q Consensus 206 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~--- 265 (369)
+...|-. ....++|+..|.+.-+.. |+..+=-.++..+...|. .+ +..++- .. +.+.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766532 123566777776665542 333221111111222222 11 112211 11 11222
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
-..+-+.+..++.++.-.|+.++|.+.++++....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23456667777777777888888888888877653
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.42 E-value=0.0047 Score=42.60 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=57.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCC---------CCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
|..++..++.++++.|+.+....+++..-..+. ..+.+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467889999999999999999999887665431 12223455566666666666666666666666666543
Q ss_pred C-CCCCCHHhHHHHHHHH
Q 036461 89 E-NINPNVVTYNSLIHGF 105 (369)
Q Consensus 89 ~-~~~~~~~~~~~l~~~~ 105 (369)
. +++-+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 2 4555555666555433
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.027 Score=49.17 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 115 KCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..-++++.++|-.|+.. .+...++-.|++.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 33445555565555543 234455556666666666643
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.33 E-value=0.07 Score=44.30 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQG---VQPNVVSFNVIMNELCK---NGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
.++-.|....+++..+++.+.+.... +.-+...-...+-++.+ .|+.++|++++..+......+++.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444556666666666666665431 11111122223334444 5666666666666444444555566655555
Q ss_pred HHHh---------cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh----HHHHHHH---HH-HHhCC---CCC
Q 036461 174 GFCL---------TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI----EGALSLY---SE-MLSKG---IKP 233 (369)
Q Consensus 174 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~-~~~~~---~~~ 233 (369)
.|-. ....++|+..|.+.-... ++...--.++..+.-.|.. .+..++- .. +.++| ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566666666654432 3322211111122222211 1111111 11 11222 234
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+...+..++.++.-.|+.++|.+..+.+.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 6666778888888889999999999888876
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.29 E-value=0.015 Score=48.93 Aligned_cols=66 Identities=20% Similarity=0.061 Sum_probs=52.9
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-h---hhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-T---VTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
|.+...|+.+..+|.+.|++++|+..|++..+.+ |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566788888888888888888888888888865 44 3 35888888888888888888888888774
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.012 Score=48.26 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhC-----CCCCc---------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSK-----GIKPD---------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
.-...+.+.|++..|...|++++.. +..+. ...+..+..++.+.+++..|+......+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3455677778888888887776652 11110 1223344445555555555555555555543 3344
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+-.-.+++...|+++.|+..|+++.+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444555555555555555555555544
No 219
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.28 E-value=0.11 Score=45.26 Aligned_cols=332 Identities=11% Similarity=0.038 Sum_probs=188.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...|..+|.---...+.+.+..++..+.... |--...|......-.+.|..+.+.++|++.... ++.+...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence 44456666665555555566777777777654 333456677777777888899999999988764 6777777
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 98 YNSLIHGFC-YANDWNEAKCLFIEMMDQ-GVQ-PNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 98 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
|...+..+. ..|+.+.....|+..... |.. .+...|...+..-...+++.....+|+++++.....=...|......
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Confidence 777665444 456777777778777653 221 23446777777777788888888888888775211111111111111
Q ss_pred HHh-----cCChHHHHHHHHHHHh--------------------cCCCchH--HHHHHH-------HHHHhhcCChHHHH
Q 036461 175 FCL-----TGRVNRAEELFVSMES--------------------MGCKHNV--FSYSIL-------INGYCKNKEIEGAL 220 (369)
Q Consensus 175 ~~~-----~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l-------~~~~~~~~~~~~a~ 220 (369)
.-. ....+++.++-..... .+.+.+. ...+.+ -.++..........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 111 1122222222211110 0000000 001111 11111222233333
Q ss_pred HHHHHHHhC---CCC----CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 221 SLYSEMLSK---GIK----PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 221 ~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
..++.-+.+ .++ ++..+|...+.--...|+.+.+.-++++..-. +..=...|-..+......|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 334433332 122 24456777777778889999999988887642 1122345555555556669988888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHH-HHHHHHHHHHhcCchHHHH
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVV-TYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 360 (369)
....+...+..+.+--.-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 877766544444433333344556789999999999988763 4433 2233444566778877776
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.082 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEE 44 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~ 44 (369)
+|..+.......|+..-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 466777888889999999888773
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.20 E-value=0.033 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcC
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANG 48 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~ 48 (369)
.++....=.||-+.+++.+....+.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 3444444556666666666665553
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.20 E-value=0.11 Score=43.70 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=63.3
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|.|+.+|..|+.-+..+|..++..++++++.... |--+.+|..-+.+-...+++.....+|.+...... +.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-------p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~l 109 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-------PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NL 109 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-------ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cH
Confidence 6788899999999999999999999999998753 44567788888877777888888888888776533 45
Q ss_pred HhHHHHHHHH
Q 036461 96 VTYNSLIHGF 105 (369)
Q Consensus 96 ~~~~~l~~~~ 105 (369)
..|...+...
T Consensus 110 dLW~lYl~YI 119 (660)
T COG5107 110 DLWMLYLEYI 119 (660)
T ss_pred hHHHHHHHHH
Confidence 5555554433
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.066 Score=46.74 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCcH-----HhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHH
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKG-IKPDV-----VIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWA 272 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (369)
+..+++...-.||-+.+++.+.+..+.+ +.-.. -.|...+..+.. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4556666667789999999888876642 22111 112223332322 45678899999998875 356555
Q ss_pred HH-HHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 273 YR-TFIDGLCKNGYIVEAVELFRTLRILK--Y-ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 273 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
|. .-.+.+...|++++|++.+++..... . +.....+..++..+.-.+++++|...|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 44 34566778899999999999765321 1 2244566677888888999999999999998753 224444444443
Q ss_pred -HHHhcCch-------HHHHHHHHHhh
Q 036461 349 -ALCADGKM-------DKARDLFLDME 367 (369)
Q Consensus 349 -~~~~~g~~-------~~A~~~~~~m~ 367 (369)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44567877 88888887654
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.11 Score=42.77 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 142 KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+.|+.+.|.++-+.....- +.-...+...+...+..|+|+.|+++++.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444444444444443332 112233444444444455555555544443
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.12 E-value=0.11 Score=42.67 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=23.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
+.|+.+.|..+-++....- +.-...+...+...+..|+++.|+++++.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455555555555544332 222334445555555555555555555543
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.025 Score=46.55 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc-----CCCc---------hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESM-----GCKH---------NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
..-.+.+.+.|++..|..-|+++... +.++ -..++..+..++.+.+++..|+..-.+.+..+. +|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cc
Confidence 34466778888888888888876532 1111 123456677777888888888888888887653 36
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI-VEAVELFRTLRI 298 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 298 (369)
....-.=.+++...++++.|+..|+.+++.. +.|...-..++.+-.+.... +...++|..|..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666777888888888888888888753 22333333344333333322 233555665553
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.095 Score=41.42 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34556677777777777776655 34456666677777777777777777776654311111111112233333
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCC
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 180 (369)
+.....+...+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. -.|...-..++..+.-.|.
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333333333322 12444444555566666666666665555544311 1233344445555544443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.089 Score=40.28 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccc---CCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPR---GVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
+-..|-.+....++..|.+.++.--+ ..-+-+..+...|+.+|- .|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 33444445555566666666665322 111223445555555553 35555554443
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.01 E-value=0.0019 Score=35.13 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
.+|..+...+.+.|++++|+++|+++.+.. |.|+..+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 578889999999999999999999999987 566777766653
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.24 Score=44.40 Aligned_cols=326 Identities=14% Similarity=0.086 Sum_probs=178.7
Q ss_pred HHcCCCcCHhHHHH-----HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh--HHHHHHH
Q 036461 11 RVFGCEPNVFTYNT-----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV--DKAKELF 83 (369)
Q Consensus 11 ~~~g~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 83 (369)
...|++.+..-|.. +|.-+...+.+..|+++-..+.... ..+...|.....-+.+..+. +.+++.+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I 496 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKI 496 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHHH
Confidence 44677777766654 5677788899999999988876533 12256777777777766322 2333333
Q ss_pred HHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 84 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ----PNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
++=..... .+...|....+-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+...
T Consensus 497 ~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 497 DEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 32222212 34456777777778889999998887643222110 12223444556667777777777776665543
Q ss_pred C-----------CCccHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hc-CCCchHHHHHHHHHHHhhcCCh-
Q 036461 160 G-----------VRPNAFVYNTLMD--------GFCLTGRVNRAEELFVSME--SM-GCKHNVFSYSILINGYCKNKEI- 216 (369)
Q Consensus 160 ~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~- 216 (369)
- .+.....|..+++ .+...++-.++...|..-. .. .+.+-..........+.+....
T Consensus 576 ~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s 655 (829)
T KOG2280|consen 576 LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKS 655 (829)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhh
Confidence 1 1111112222211 1111112112221111100 00 0011111222333333333221
Q ss_pred ---------HHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 217 ---------EGALSLYSEMLSK-GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 217 ---------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
.+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++
T Consensus 656 ~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 656 FEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhH
Confidence 1112222222221 222233344455555666788888887766654 36777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
++-+++-+... ++.-|.-.+.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 88766555433 2556677788899999999998888776542 1 3566788888888887653
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.85 E-value=0.038 Score=46.59 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=56.8
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
|.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345778999999999999999999999998885 3443 35889999999999999999999999875
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.039 Score=38.12 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI-LKYELDIRAYNCLIDGL 315 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 315 (369)
..|+..++.+++.+|+..|++..|.++.+.+.+ .+++.+..+|..|+..+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 446666666777777777777777776666653 24455566666666543
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.78 E-value=0.32 Score=42.44 Aligned_cols=112 Identities=10% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH-hcCChHHHH
Q 036461 3 AAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC-KEGFVDKAK 80 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~ 80 (369)
++.+++.++.. .|... -|......-.+.|..+.+.++|++.... ++-+...|.....-+. ..|+.+...
T Consensus 64 ~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 64 LREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred HHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34444444433 22222 4555555555556666666666665553 2444555544443332 345555555
Q ss_pred HHHHHhHhC-CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 81 ELFLKMKDE-NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 81 ~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|+..... |.. .....|...+..-..++++.....+++++++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 556555442 111 1334455555555555555555555555554
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.77 E-value=0.22 Score=40.31 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 166 FVYNTLMDGFCLTGRVN---RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
.+...++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666665543 3444444443332 223444444455555566777777777777665
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.74 E-value=0.2 Score=42.52 Aligned_cols=114 Identities=13% Similarity=0.013 Sum_probs=67.2
Q ss_pred hHHHHHHHHH---HcCCCcCHhHHHHHHHHHHhc---------CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHH
Q 036461 2 EAAALFMKLR---VFGCEPNVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDG 69 (369)
Q Consensus 2 ~A~~~~~~~~---~~g~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 69 (369)
+|+.+|.+.. +.+ |....+|..+..++... .+..+|.+..++..+.+ +.|+.+...+..+
T Consensus 276 ~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-------~~Da~a~~~~g~~ 347 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-------TVDGKILAIMGLI 347 (458)
T ss_pred HHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHH
Confidence 4667777776 332 22244555444443322 23345666666677666 5566666667766
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
....++++.|..+|++....+ |-...+|......+.-.|+.++|.+.+++..+.
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 666677777777777776642 223444555555555567777777777775554
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.1 Score=42.00 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=110.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH--hH--HHHHHHHHhcccH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IY--NTLFIGLFEIHQV 251 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~~~~ 251 (369)
-..|+..+|-..++++.+.- |.|..++...=.+|...|+...-...++++... -.+|.. +| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888888887763 778888888888899999999999888888875 123332 22 3344455678899
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL---KYELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
++|++.-++..+.+ +.|..........+.-.|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888764 457788888888888899999998887654421 10111233444455667778999999999
Q ss_pred Hhcc
Q 036461 329 RSLP 332 (369)
Q Consensus 329 ~~~~ 332 (369)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.22 Score=39.44 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=71.7
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
.....|++.+|...|........ -+...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44555666666666666655532 23444455666666666666666666665433211112222223333444444444
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhCCCHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ ---|...-..++..+.-.|.-+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 33443333332 1144445555666666666666666555544321 1123445555555555555333
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.68 E-value=0.14 Score=44.08 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
+...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-.++.+.....|- ++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 344555555555555555555555544332 23344444445555444444444443321 233333
Q ss_pred HHHhcccHHHHHHHH
Q 036461 244 GLFEIHQVERAFKLF 258 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~ 258 (369)
++...|+.+++.+++
T Consensus 411 ~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 411 AALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHT-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 333445555554444
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.66 E-value=0.21 Score=38.77 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=44.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
-+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++.+..-+.....-|...+.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3334456677777777777776541 122334455566677777777777777777766533322333444444444
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=96.64 E-value=0.32 Score=41.36 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHhC-CCCCc-HHhHHHHHHHHHh---------cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 215 EIEGALSLYSEMLSK-GIKPD-VVIYNTLFIGLFE---------IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345677777777722 22333 2334433333221 223445666666666664 34677777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC---HHHHHHHHHHHHhcCchHHHH
Q 036461 284 GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD---VVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 360 (369)
++++.|...|++....+ |....+|......+...|+.++|.+.+++..+. .|. .......+..|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 77888888888877765 445566666666777778888888888776654 232 22223333344443 345555
Q ss_pred HHH
Q 036461 361 DLF 363 (369)
Q Consensus 361 ~~~ 363 (369)
+++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 544
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.58 E-value=0.14 Score=35.96 Aligned_cols=66 Identities=9% Similarity=-0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+..-.....+.|++.+|++.|+.+..+.+.+ +-...+...++.+|.+.++++.|...+++.++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444555667777777777777777765321 223455666777777777777777777777664
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.57 E-value=0.011 Score=32.07 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.51 E-value=0.35 Score=39.51 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=108.6
Q ss_pred HHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHhcC-CCCChhhHHHHHHHHHh
Q 036461 70 LCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLFI----EMMDQG-VQPNVVSFNVIMNELCK 142 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~ 142 (369)
+....+.++|+..+.+.... +....-.++..+..+.++.|.+++++..-- ...+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777887777776553 111122345556667777777666655322 121110 00011233344444444
Q ss_pred CCChhHHHHHHHHHHHc-CCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhhc
Q 036461 143 NGKMDEASRLLELMIQI-GVRP---NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK-----HNVFSYSILINGYCKN 213 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 213 (369)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.... ....++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44455555544444332 1111 1122334555666666677777777666432111 1234566666666666
Q ss_pred CChHHHHHHHHHHHhC----CCCCcHH------hHHHHHHHHHhcccHHHHHHHHHHHHH----cCCCc-CHHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSK----GIKPDVV------IYNTLFIGLFEIHQVERAFKLFDEMQR----HGVAA-DTWAYRTFID 278 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 278 (369)
.|+++|.-+..+..+. ++. |.. ....+.-++...|....|.+..++..+ .|..+ .......+..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777766665554431 111 111 112233344455555555555544332 33221 1223344555
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 036461 279 GLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~ 297 (369)
.|...|+.+.|..-|+.+.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666666666666665544
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.089 Score=41.10 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCCHHhHHHHHHHHHh
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTYNSLIHGFCY 107 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 107 (369)
.+.|++..|...|....+..+.. +-.+..+.-|..++...|+++.|..+|..+.+.- .+--+..+..|..+..+
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 34444555555555555544211 1112233344555555555555555555554421 01112334444445555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 036461 108 ANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~ 124 (369)
.|+.++|..+|+++.++
T Consensus 228 l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 LGNTDEACATLQQVIKR 244 (262)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 55555555555555544
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.093 Score=41.02 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=44.9
Q ss_pred hcCChHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhCCCHH
Q 036461 212 KNKEIEGALSLYSEMLSKGIK--PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV--AADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 287 (369)
+.|++..|...|...++..+. -....+-.|..++...|+++.|..+|..+.+.-. +--++.+-.+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344566666666655554211 1223344455556666666666666655554211 112345555555555666666
Q ss_pred HHHHHHHHHHHc
Q 036461 288 EAVELFRTLRIL 299 (369)
Q Consensus 288 ~a~~~~~~~~~~ 299 (369)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.15 Score=34.89 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=43.0
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH---HhHHHHHHHH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV---VTYNSLIHGF 105 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 105 (369)
+...|+.+.|++.|.+....- |.+...||.-..++.-.|+.++|++=+++..+..-+.+. ..|..-...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 444555555555555555432 344555555555555555555555555555442111111 1222233344
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 036461 106 CYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~ 125 (369)
...|+-+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 44555555555555544443
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.48 E-value=0.22 Score=40.65 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCChhHHHHHH----HHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 2 EAAALFMKLRVFG--CEPNVFTYNTLINGLCRTGHTIVALNLF----EEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 2 ~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+|+.+|.+....- ....-.++..+..+.++.|.+++++..- +....... ...--..|..+.+++-+..+
T Consensus 24 ~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-----s~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 24 KALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-----SDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4555555544320 1122336777778888888888765532 22222110 01123456777777777777
Q ss_pred hHHHHHHHHHhHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhCCCh
Q 036461 76 VDKAKELFLKMKDE-NINP---NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG-----VQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 76 ~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 146 (369)
+.+++.+-..-... |..| .-....++..++...+.++++++.|+....-. .-....++..+...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 77777766554432 2222 11334456778888889999999998876531 112344678888999999999
Q ss_pred hHHHHHHHHHHHc----CCCccHHHH-----HHHHHHHHhcCChHHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhh
Q 036461 147 DEASRLLELMIQI----GVRPNAFVY-----NTLMDGFCLTGRVNRAEELFVSMESM----GCK-HNVFSYSILINGYCK 212 (369)
Q Consensus 147 ~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 212 (369)
++|.-+.....+. ++..-..-| ..+.-++...|....|.+..++..+. |-. .-......+...|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 9988776665543 222111112 23344667778888888887776443 311 123345567788899
Q ss_pred cCChHHHHHHHHHHHh
Q 036461 213 NKEIEGALSLYSEMLS 228 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~ 228 (369)
.|+.+.|+.-|++...
T Consensus 259 ~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMG 274 (518)
T ss_pred cccHhHHHHHHHHHHH
Confidence 9999999888887654
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.17 Score=40.75 Aligned_cols=156 Identities=10% Similarity=-0.023 Sum_probs=111.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhhcCCh
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM---GCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
.-..|+..+|...++++++. .|.|...+...=.+|...|+...-...++++... ++|-.+.....+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34568888888899998885 4668888888889999999999999999888644 2233334444555666789999
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH---GVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
++|.+.-++..+.+.. |...-.++...+...+++.++.+....-... +.-.-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999998886533 6666667777777889999998876654321 10011122223344566779999999999
Q ss_pred HHHH
Q 036461 294 RTLR 297 (369)
Q Consensus 294 ~~~~ 297 (369)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7654
No 249
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.39 Score=39.50 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... +-++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888888766552 36888899999999999999987776432 224577888899999
Q ss_pred cCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 317 KSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+.|...+|..+..++.. ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998888321 3456678888999988776433
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.65 Score=41.83 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=161.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
.++.-+...+.+..|+++-..+...-.. +...|.....-+.+..+. +++.+.+++=.+... .....|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 3455666678888888887666433112 256666666666665322 223333332222222 245577888888888
Q ss_pred CCChhHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------CCchHHHHHHHH
Q 036461 143 NGKMDEASRLLELMIQIGVR----PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-----------CKHNVFSYSILI 207 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~ 207 (369)
.|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...- .+.....|..++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 99999998887643222111 112223445566677788777777766654321 111222222222
Q ss_pred H--------HHhhcCChHHHHHHHH--HHHh----CCCCCcHHhHHHHHHHHHhccc----------HHHHHHHHHHHHH
Q 036461 208 N--------GYCKNKEIEGALSLYS--EMLS----KGIKPDVVIYNTLFIGLFEIHQ----------VERAFKLFDEMQR 263 (369)
Q Consensus 208 ~--------~~~~~~~~~~a~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~ 263 (369)
+ .+.+.++-.++...|. .... .+..|+ .......+.+... ..+-+++.+.+..
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred Hhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 0111112222221111 1000 112222 2223333433322 1122222223322
Q ss_pred -cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHH
Q 036461 264 -HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVT 342 (369)
Q Consensus 264 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 342 (369)
.+.....-+.+.-+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++-+.... +.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIG 746 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIG 746 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCC
Confidence 2323334456666777888999999998888776 68999999999999999999998887766542 445
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHh
Q 036461 343 YNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|.-...+|.+.|+.++|.+++-+.
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhcc
Confidence 666788999999999999987654
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.41 E-value=0.17 Score=34.66 Aligned_cols=92 Identities=21% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhCC
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV---SFNVIMNELCKNG 144 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 144 (369)
-++...|+.+.|++.|.+.+.- .|.....||.-..++.-+|+.++|+.-+++..+..-..+.. .|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455667777777777776654 34466677777777777777777777777666542121222 2222333455566
Q ss_pred ChhHHHHHHHHHHHcC
Q 036461 145 KMDEASRLLELMIQIG 160 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~ 160 (369)
+-+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6677766666666655
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.23 Score=35.97 Aligned_cols=139 Identities=11% Similarity=0.095 Sum_probs=94.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
+-..|..-+. +.+.++.++|+.-|..+.+.+ ...- +-............|+...|...|+++-.....|-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg------~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG------YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 3345555444 567788899999999988876 1211 3344556677788899999999999987653333332
Q ss_pred -hHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 97 -TYN--SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 97 -~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
-.- .-...+...|.+++...-.+.+-..+.+.....-..|.-+-.+.|++..|.+.|..+......|
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 111 1223456788899988888887766555555556677777788999999999998887643333
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.38 E-value=0.15 Score=43.90 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=104.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
.....-.++++.+.++.+.-.-.. .-.....+.++.-+.+.|-.+.|+++-.. +. .-....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLA 328 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELA 328 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHH
Confidence 345556788888777775211100 11245578888888899999999887533 22 234556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 6789999998776543 3677999999999999999999999987643 456667788889998888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
++.+.....| . ++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8888877765 2 344445556678888888776543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.37 E-value=0.33 Score=37.72 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 99 (369)
.|-.-+....+.|++++|.+.|+.+..+.+. .+-...+...++.++.+.++++.|+..+++.... +-.||. .|.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 4444555677899999999999999987632 1234567788889999999999999999998775 223333 344
Q ss_pred HHHHHHH
Q 036461 100 SLIHGFC 106 (369)
Q Consensus 100 ~l~~~~~ 106 (369)
..|.+.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444443
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.29 E-value=0.38 Score=37.48 Aligned_cols=225 Identities=20% Similarity=0.092 Sum_probs=147.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAE 185 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (369)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666543221 2456677777888888888888888877652 22445566677777778888888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHHH-HHhhcCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 186 ELFVSMESMGCKHNVFSYSILIN-GYCKNKEIEGALSLYSEMLSKGI--KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887654222 222223333 67788888888888888865321 1233334444444666778888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 263 RHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
..........+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 75321135667777778888888888888888887653 222444455555555666788888888777664
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.36 Score=37.17 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
...|..-..+|...+++++|...+.+..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34566667778888899999888877764
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.20 E-value=0.7 Score=39.68 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch-HHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN-VFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 207 (369)
+-..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3345667777888888898888888765322 2344667788888888888888888888765443322 33455443
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.19 E-value=1.2 Score=42.43 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHHhHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 036461 80 KELFLKMKDENINPNVVTYNSLIHGFCYAN--DWNEAKCLFIEMMD 123 (369)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 123 (369)
.+.+.....+ ..|+ .....++..|.+.+ .++.++....+...
T Consensus 777 c~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 777 CDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3334443333 2334 34446777787776 66677776666654
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.12 E-value=0.1 Score=41.48 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFN 134 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (369)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566667777777777777777777776663 45777777777777777777777777776654 36666666665
Q ss_pred HHHHH
Q 036461 135 VIMNE 139 (369)
Q Consensus 135 ~l~~~ 139 (369)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.6 Score=42.62 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=113.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (369)
...-+..+.+...++-|+.+-+. .+..++ .........-+.+.|++++|...+-+....- .|+ .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHh
Confidence 44556666777777777766543 222222 2233444556677889999888887665431 222 334555
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAYRTFIDGLCKNGYIVEA 289 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 289 (369)
........-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+.+.+-.++|
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEA 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHH
Confidence 6666777778888888888776 55556778889999998888777765544 221 112 34556667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..+-.+... +......+ +-..|++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 766655432 23333333 456788999999988874
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.48 Score=35.80 Aligned_cols=177 Identities=17% Similarity=0.030 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
.-|.--|.+..... |.-+.+||.+.-.+...|+++.|.+.|+...+.+...+-...|.-+ ++.-.|++.-|.+-+.+.
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHH
Confidence 33333444444432 2235567777777777777777777777777664222222222222 233456777777666666
Q ss_pred HhCCCC-CcHHhHHHHHHHHHhcccHHHHHHHH-HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-
Q 036461 227 LSKGIK-PDVVIYNTLFIGLFEIHQVERAFKLF-DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL- 303 (369)
Q Consensus 227 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 303 (369)
-+.+.. |-...|--+. -+.-++.+|..-+ ++.... |..-|...+..+. .|.+.+ ..+++++.... ..
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a-~~n 229 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKADA-TDN 229 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc-cch
Confidence 554322 1111111111 1233455554333 333322 2223322222221 122111 12223322211 11
Q ss_pred ------CHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 304 ------DIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 304 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
-..+|..+..-+...|+.++|..+|+-.+..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 13466667777778888888888888776653
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.48 Score=43.21 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
....-+..+.+..-++-|+.+-..-.. .++ .........-+.+.|++++|...|-+.+.. +.|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~---------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL---------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 344556667777777777776554221 122 223334445556788999988888776654 2322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (369)
.++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.- ..-....+..+.+.
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh
Confidence 2445556666777777788888888766 55566778888888888777666655443 2211 00122334444445
Q ss_pred CChHHHHHHHH
Q 036461 179 GRVNRAEELFV 189 (369)
Q Consensus 179 ~~~~~a~~~~~ 189 (369)
+-.++|.-+-.
T Consensus 477 nyl~~a~~LA~ 487 (933)
T KOG2114|consen 477 NYLDEAELLAT 487 (933)
T ss_pred ChHHHHHHHHH
Confidence 55555544433
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=0.66 Score=36.07 Aligned_cols=225 Identities=18% Similarity=0.066 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHhHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 74 GFVDKAKELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-GVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5556666666666554221 12566777777888888888888888887652 223455566667777777888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 152 LLELMIQIGVRPNAFVYNTLMD-GFCLTGRVNRAEELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888887754333 222222333 67888999999999888855321 12333344444446677888888888888887
Q ss_pred CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 229 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.........+..+...+...++++.+...+......... ....+......+...+..+.+...+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 632213566777777888888888888888888775321 23444444445556677888888888877653
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.79 E-value=0.81 Score=37.04 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=97.8
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHH-------HHHHHHhcC-CHHHHHHHHHHHHhc--------CCCCCh---
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNS-------LIHGFCYAN-DWNEAKCLFIEMMDQ--------GVQPNV--- 130 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 130 (369)
..+.|+.+.|..++.+........++..... ........+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3568999999999999876421223222222 222333455 899998888776543 112222
Q ss_pred --hhHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 131 --VSFNVIMNELCKNGKMD---EASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 131 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
.++..++.++...+..+ +|..+++.+.... +-.+.++..-++.+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 35566777888777654 4556666665442 2235566666777888999999999999998763 213334444
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHhCCCCCcH
Q 036461 206 LINGYCK--NKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 206 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
.+..+.. ......+...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4444421 23345566666666655444444
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.79 E-value=0.14 Score=40.72 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI-----LKYELDIRAYNC 310 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 310 (369)
.++..++..+...++++.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666777777777666653 44666677777777777777777777666653 355555555444
Q ss_pred HHH
Q 036461 311 LID 313 (369)
Q Consensus 311 l~~ 313 (369)
+..
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 266
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.78 E-value=1 Score=38.16 Aligned_cols=115 Identities=24% Similarity=0.206 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHH----HHHHH---hcccHHHHHHHHHHHHHcCCCcCHH----HHHHHHH--HHHh
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTL----FIGLF---EIHQVERAFKLFDEMQRHGVAADTW----AYRTFID--GLCK 282 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~ 282 (369)
-++|+.+++.+.+-.. -|...-+.+ =..|. ....+.+-..+-+-+.+.|++|-.. .-+.+.. -+..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6677777777766421 122222222 12222 2234555555556666677766432 2333332 3456
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.|++.++.-.-.-+.+. .|++.+|..++-++....++++|+.++..+..
T Consensus 475 qgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 78999887665555544 78999999999999999999999999998754
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.65 E-value=0.5 Score=33.55 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=20.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
.++..+.+.+.+......++.+...+ +.++...+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-------~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-------SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-------ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555443 23444555555555443
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.64 E-value=0.48 Score=33.32 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+..+..-.....+.|+++.|.+.|+.+..+ .|. ....-..++.+|.+.+++++|...+++.++..+.....-|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 334444555667789999999999999876 222 3455667888999999999999999999887544333445555
Q ss_pred HHHHHh
Q 036461 137 MNELCK 142 (369)
Q Consensus 137 ~~~~~~ 142 (369)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.62 E-value=0.031 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666777777777777777766
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.55 E-value=0.55 Score=33.35 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
...++..+...+.+.....+++.+...+ +.+...++.++..|++.+ ..+....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 4456666666778888888888887765 357777888888887653 3344444442 1 233444557777777
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
.+-++++..++..+.. ... .+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766522 111 22223333 6677777766642 24455666665544
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.48 E-value=0.44 Score=35.43 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEM 121 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (369)
.+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555444322221 223344444445555555555544444
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.38 E-value=0.25 Score=38.85 Aligned_cols=105 Identities=18% Similarity=0.294 Sum_probs=56.6
Q ss_pred CccHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH
Q 036461 162 RPNAFVYNTLMDGFCL-----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (369)
+.|...|...+..+.. .+.++-....++.|.+.|+..|..+|..|+..+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3455666666655543 2456666666677777777777777777776654321 1111 1
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
.+......|- .+-+-++.++++|..+|+.||.++-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223456666666666666666666666666655543
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.37 E-value=0.024 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHH
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVAL 39 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 39 (369)
|++.++.. |-++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677775 778999999999999999999986
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.34 E-value=0.024 Score=28.67 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 42 FEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
|++.++.+ |.|+.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 567888999999999999888875
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.32 E-value=0.58 Score=32.24 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
+.......+..+...|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666666666665433 56666666667777777777777766666666554
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.20 E-value=0.053 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
+|..|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999999999999553
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.84 Score=33.19 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHH-HHH--
Q 036461 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW-AYR-- 274 (369)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-- 274 (369)
+...|..-+. +.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-.....|-.. -..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 456788899999999999876542221 11223344567889999999999987643333222 111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 338 (369)
.-...+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|.++......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1223456788899888888877765544556666778888889999999999999887643333
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.07 E-value=0.44 Score=35.43 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
..+..+...|.+.|+.+.|.+.|.++.+....+ -...+..+++.....+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456677777888888888888888776653222 2334556667777777777777776665543
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.04 E-value=0.88 Score=32.75 Aligned_cols=51 Identities=18% Similarity=0.004 Sum_probs=24.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
.+.++.+++..+++.+.... |. +..-..-...+...|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555555433 22 22222223334455555555555555544
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.00 E-value=1.6 Score=35.57 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh--cC----ChHHHHHHHHHHHhCCCC---CcHHhHHHHHHHHHhccc-
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCK--NK----EIEGALSLYSEMLSKGIK---PDVVIYNTLFIGLFEIHQ- 250 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 250 (369)
+++...+++.+.+.|+..+..++.+....... .. ....|..+|+.|.+..+. ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776665543333322 22 345677888888887532 233444444333 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 251 ---VERAFKLFDEMQRHGVAADTW--AYRTFIDGLCKNGY--IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 251 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
.+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.++++....|..++-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 345667777777766654332 23333332222222 44677788888888877777777666544433333
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.96 E-value=0.21 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
++.+.++.+...+.-|++....+.+++|.+.+++..|+++|+-+...- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 356677788888889999999999999999999999999999887543 234445655553
No 282
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.95 E-value=2 Score=36.50 Aligned_cols=127 Identities=15% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHH-HHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSY-SILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 210 (369)
|...+....+..-.+.|..+|-++.+.+ +.+++..+++++..+ ..|+..-|..+|+.-... -||...| ...+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 3344444444444555555555555554 334444444444433 234555555555544333 1222222 2333344
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
..-++-+.|..+|+..+.+ +..+ ...|..++..-..-|+...+..+-+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4455555555555543332 1111 23444555554555555555544444444
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.88 E-value=3 Score=38.16 Aligned_cols=222 Identities=13% Similarity=0.177 Sum_probs=91.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhh---
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCK--- 212 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 212 (369)
...+.-.|.++.|.+.+-. ..+...+.+++...+..|.-.+-.+... ..+.... -.+...-+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3444556777777766655 1122344555444443332221111111 2221111 01112456677777765
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHH-HHHHhcccHHHHH-----------HHHHH---HHHcCCCcCHH---HHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLF-IGLFEIHQVERAF-----------KLFDE---MQRHGVAADTW---AYR 274 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-----------~~~~~---~~~~~~~~~~~---~~~ 274 (369)
..++..|..++--+....-+.....+...+ ......++++.-+ .++++ +... ..++.. ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~-~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKF-DDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT--SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCC-CCcHHHHHHHHH
Confidence 567888888887776643221222222222 1222222222111 11111 1111 011222 223
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCC-----------HHHHHHHHHhcccCCc------
Q 036461 275 TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG-LCKSGR-----------LKIAWELFRSLPRGVL------ 336 (369)
Q Consensus 275 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~-----------~~~a~~~~~~~~~~~~------ 336 (369)
....-+...|++++|..+|.-+.+.+ .-....+.++.- ...... ...|..+.+.....+.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 34445667888888888887665321 112233333332 222222 3445555554443221
Q ss_pred ccCHHHHHHHHH-----HHHhcCchHHHHHHHHHh
Q 036461 337 IADVVTYNIMIH-----ALCADGKMDKARDLFLDM 366 (369)
Q Consensus 337 ~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m 366 (369)
.....|+..|+. -+.+.|++++|++.++++
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 113445555554 357889999999999875
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.81 E-value=4 Score=39.27 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhc
Q 036461 276 FIDGLCKNGYIVEAVELFRTLRILKYELDIR--AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCAD 353 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (369)
.+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.... | .-.+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 445556666666666666555421 1111 1245666777778877777777776553 1 1223345555
Q ss_pred CchHHHHHHH
Q 036461 354 GKMDKARDLF 363 (369)
Q Consensus 354 g~~~~A~~~~ 363 (369)
..|++|+++.
T Consensus 1040 ~~~~eAlrva 1049 (1265)
T KOG1920|consen 1040 KEWEEALRVA 1049 (1265)
T ss_pred hHHHHHHHHH
Confidence 5677776654
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=6.3 Score=41.12 Aligned_cols=322 Identities=12% Similarity=0.043 Sum_probs=160.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
.+..+-.+.+.+.+|+..++.-.....+ -......+..+...|...++++...-+...... +...+ .-+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455666788899999998884211100 011233445555589999999988877764222 22222 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH-HHHHHHHhcCChH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN-TLMDGFCLTGRVN 182 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 182 (369)
.....|+|..|...|+++.+.+ ++...+++.++......|.+...+...+-..... .+....++ .-+.+.-+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5567899999999999999874 3346677878877777888888777666554432 22333333 2334446677777
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH--HHHHHhh--cCChHHHHHHHHHHHhCCCCC---------cHHhHHHHHHHHHhcc
Q 036461 183 RAEELFVSMESMGCKHNVFSYSI--LINGYCK--NKEIEGALSLYSEMLSKGIKP---------DVVIYNTLFIGLFEIH 249 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 249 (369)
....... ... ...|.. +.....+ ..+.-.-.+..+.+.+.-+.| -...|..++....-..
T Consensus 1536 ~~e~~l~--~~n-----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS--DRN-----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh--ccc-----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7776655 111 111211 2222222 112111112222222211110 0122333332221111
Q ss_pred cHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCC-----CCCHHHHHHHHHHHHcCCCHH
Q 036461 250 QVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL-RILKY-----ELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 250 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~g~~~ 322 (369)
.+.-.+.+..... .....+...|..-+..-....+..+-+--+++. ..... .--..+|...++.....|.++
T Consensus 1609 -l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 -LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred -HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1111111100000 000111111222222111111122222222221 11111 123467777888888888888
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.|...+-.+.+.+ -+..+.-.+..+...|+...|+.++++..+
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8888777776654 234555666777888888888888887653
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.61 Score=36.81 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHH
Q 036461 127 QPNVVSFNVIMNELCK-----NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVF 201 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (369)
.-|..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+-.-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 4467778777777654 356777778889999999999999999999876443211 11 1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
.+....-.|-+ +-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111111 223355566666666666666666666666555443
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.64 E-value=1.2 Score=32.47 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLF 42 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 42 (369)
+.++.+.+.|++|+...+..+++.+.+.|++..-..++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555566667777777777777777777655444443
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.63 E-value=2.7 Score=36.37 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
++.-.-+..+.+.-++.-.+..+. .|+. ..|..|. --......++.+++++..+.|- ..+..-- .....|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhccc
Confidence 333344455555555555555542 3333 2222221 1234457788888887765431 1111000 000111
Q ss_pred ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 145 KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
..++........+-..+-..+..++-+.|+.++|++.++++.+.. ......+...++.++...+.+.++..++
T Consensus 245 ------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 ------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111222222223334444567778889999999999999998653 1234557788999999999999999999
Q ss_pred HHHHhCCCCC-cHHhHHHHHHH
Q 036461 224 SEMLSKGIKP-DVVIYNTLFIG 244 (369)
Q Consensus 224 ~~~~~~~~~~-~~~~~~~l~~~ 244 (369)
.+..+...+. -...|+..+-.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHhccccCCchHHHHHHHHHHH
Confidence 9986543222 23355554433
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.39 E-value=0.32 Score=31.60 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
..+-++.+...++-|++....+.+++|.+.+++..|+++|+-+...- .+....|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHHHHHH
Confidence 44556677777888999999999999999999999999999988764 233336666554
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.31 E-value=1.8 Score=32.95 Aligned_cols=30 Identities=23% Similarity=0.071 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 270 TWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.++|-.+...+...|+.++|..+|+-.+..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 346666677777777777777777766643
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.25 E-value=3.2 Score=35.69 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
-|......|+...|-+-+....++. +.++.............|+++.+.+.+...... +.....+...+++.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 3445556677776655544444443 344444444555566778899888888776553 33455667778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
..+.++++.|..+-.-|....++ +...........-..|-++++.-.|++....+.
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 88888999999888888776554 444444434444456777888888888876653
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.10 E-value=1.3 Score=30.62 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (369)
.....+......|.-+...+++..+.+. -.+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555566666777777777666543 245666777777777777777777777777766653
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.93 E-value=1.8 Score=31.63 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
+.++.+...+++|+...+..++..+.+.|++.....++ +.++-+|.......+-.+ .+....+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 44555566677777777777777777777755444333 334444444333322211 22333344443333332
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
=...+..+++.+...|++-+|.++.+...... ......++++..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00123445566666777777777766643221 11123345555555555554444444443
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.90 E-value=0.73 Score=29.70 Aligned_cols=45 Identities=4% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
++.+-++.+...+..|++......+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.83 E-value=0.2 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 341 VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..|..+..++...|++++|++.|++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666677777777777777776654
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.75 E-value=0.22 Score=24.92 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 341 VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.+|..+..++...|++++|+..|++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 356666677777777777777776654
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.70 E-value=4.2 Score=35.06 Aligned_cols=124 Identities=9% Similarity=0.022 Sum_probs=79.2
Q ss_pred HHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 69 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
-....|+.-.|-+-+.....+ .+.++.............|+++.+...+...... +.....+...+++.....|++++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334456665554443333332 2223333334445566788888888888766543 33455677788888888899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
|...-..|+...+. ++..........-..|-++++.-.++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99888888876654 44444444444556677888888888887654
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.69 E-value=1.8 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=31.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccc-hhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
...++++++..+++.+.... |+ ...-..-...+...|++++|+++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34677777777777776644 32 222222334455667777777777777665
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.69 E-value=0.19 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.+|..+..++...|++++|+..|++..+.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999999855
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.59 E-value=5.9 Score=36.49 Aligned_cols=310 Identities=10% Similarity=0.024 Sum_probs=146.5
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh--cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK--EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..+.|++..+.++...+... +. ..|......... ...+++....+++-.. .+.....-...+..+.
T Consensus 43 a~~~g~~~~~~~~~~~l~d~--------pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY--------PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC--------Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHH
Confidence 45667777777766665321 11 222222222222 2245554444444332 1222233334445556
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE- 185 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 185 (369)
+.+++......+.. .+.+...-...+.+....|+.++|......+-..| ...+..+..++..+.+.|......
T Consensus 111 ~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 111 RREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence 67777776663311 23344444566777777888777776666665555 234555666666666555543322
Q ss_pred -HHHHHHHhcCCCchHHHHHHHHHHHhh------------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH--HHhccc
Q 036461 186 -ELFVSMESMGCKHNVFSYSILINGYCK------------NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG--LFEIHQ 250 (369)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 250 (369)
+-++.+...+ +...-..+...... ..+...+...+.. +.|+...-..++.+ -....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence 1122222221 11111111111100 0111111111111 11222111111111 123455
Q ss_pred HHHHHHHHHHHHHcC-CCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 251 VERAFKLFDEMQRHG-VAAD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.+.|..++....... ..+. ..+...+.......+...++...++..... ..+......-+......++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 677888887764432 2111 112333333333332245566665554322 23444555555566677888888888
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+..|.... .-...-..-+.+++...|+.++|...|+++.
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 87775532 2233444456677777888888888887753
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.82 Score=36.72 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH
Q 036461 159 IGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
.|.+....+...++..-....+++.+...+-+++... ..++... ...++.+. .-++++++.++..=++.|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 3555556666666666666778888888888776431 1111111 12233332 34677888888888888999999
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
.+++.++..+.+.+++..|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888888777654
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.55 E-value=0.2 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
..|..+...+...|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568889999999999999999999998855
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.40 E-value=5.9 Score=35.87 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHH-----HHhcCChhHHHHHHHHHHcC---CCCCCcccccchhhHHHHHHHHHhc
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLING-----LCRTGHTIVALNLFEEMANG---NGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
+|.++++...+.| +......+..+ .....+++.|+..|+.+... .. ..-++.....+..+|.+.
T Consensus 230 ~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-----~~~~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 230 EAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-----TKGLPPAQYGLGRLYLQG 301 (552)
T ss_pred HHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-----hhcCCccccHHHHHHhcC
Confidence 4677777777766 33333333322 33557888899988888661 00 011344566677777664
Q ss_pred C-----ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----C
Q 036461 74 G-----FVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----N 143 (369)
Q Consensus 74 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 143 (369)
. +.+.|..++.+.-+.|.+ +.......+..... ..+...|.++|......|. ...+..+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 566788888887776533 44433222222222 2356788888888877763 2333333333322 2
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
.+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46777788888777776 2222222222233333 66666665555555444
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=2.6 Score=31.47 Aligned_cols=89 Identities=9% Similarity=-0.042 Sum_probs=50.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAY-----RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
...+...+++++|...++..... |....+ ..+.+.....|.+++|+..++.....+ ........-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHH
Confidence 34556667777777777666543 122222 233445566677777777776655432 12333344455667
Q ss_pred cCCCHHHHHHHHHhcccCC
Q 036461 317 KSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~ 335 (369)
..|+-++|...|++....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777766653
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.18 E-value=4 Score=33.34 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhCCC-
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHGFCY--AN----DWNEAKCLFIEMMDQGV---QPNVVSFNVIMNELCKNGK- 145 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 145 (369)
+++.+.+++.+.+.|...+..+|.+....... .. ....|..+|+.|++..+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555666677777776666555442222222 11 24456667777766421 1222233333322 2222
Q ss_pred ---hhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCchHHHHHHHH
Q 036461 146 ---MDEASRLLELMIQIGVRPNA--FVYNTLMDGFCLTGR--VNRAEELFVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 146 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (369)
.+.+..+|+.+.+.|...+- .....++........ ..++.++++.+.+.++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 23445555555555544322 112222221111111 234555555555555555544444433
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.16 E-value=2.2 Score=30.28 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=36.4
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
...++++.+..++..+.-. .|+. ..-..-...+...|++++|.++++.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3577888888888887764 3332 223333455678888999999988887653
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.13 E-value=6.5 Score=35.60 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhC
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHG-----FCYANDWNEAKCLFIEMMD-------QGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 143 (369)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.... .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567889998888775 33333333333 3355789999999999876 44 333566677777774
Q ss_pred C-----ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh--hcCC
Q 036461 144 G-----KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAEELFVSMESMGCKHNVFSYSILINGYC--KNKE 215 (369)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 215 (369)
. +.+.|..++...-+.| .|+.......+..... ..+...|.++|......|. +....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 3 5677999999998887 3455444333322222 2467899999999998873 22222222221111 2457
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHH---Hh----CCCHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF-IDGL---CK----NGYIV 287 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~~~ 287 (369)
...|..++.+..+.| .|....-...+..+.. +.++.+...+..+.+.+... ..+-... +... .. ..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 889999999999987 3332222223333333 67777766666666554321 1111111 1111 11 12455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHhcccC
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLCKS----GRLKIAWELFRSLPRG 334 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~ 334 (369)
.+...+.+....| +......+...|... .+++.|...+......
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 5666666655443 444444554444332 2355666666555544
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.13 E-value=0.27 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+++.+..+|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555566666666666666665554
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.12 E-value=0.9 Score=34.07 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhH--hCCCCCCHHhHHHHHHHHHhcCCHHH
Q 036461 36 IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMK--DENINPNVVTYNSLIHGFCYANDWNE 113 (369)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (369)
+.|...|-.+...+ .-.++.....|+..|.+...-..-.-+++.+. ..+-.+|+..+.+|+..+.+.++++.
T Consensus 123 ~~A~~~fL~~E~~~------~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLEGTP------ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred HHHHHHHHHHcCCC------CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45666666666555 23455666666666665443333333333332 22235677777777777777777766
Q ss_pred HH
Q 036461 114 AK 115 (369)
Q Consensus 114 a~ 115 (369)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.06 E-value=1.5 Score=32.95 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCC
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 180 (369)
.+.+.|+ +.|.+.|-++...+.--++.....+ ..|....+.+++..++....+. +-.+|+..+..|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444444 6677888787776544444444444 4455578889999999888765 336788999999999999999
Q ss_pred hHHHH
Q 036461 181 VNRAE 185 (369)
Q Consensus 181 ~~~a~ 185 (369)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98875
No 311
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.02 E-value=1.6 Score=32.65 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDV----VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
.-+...|++++|..-|...+..-+.... ..|..-..++.+.+.++.|+.-....++.+.. ....+..-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456677777777777777765322111 22333344556666677666666666654321 222233334466666
Q ss_pred CCHHHHHHHHHHHHHc
Q 036461 284 GYIVEAVELFRTLRIL 299 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~ 299 (369)
..+++|+.-|+.+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6777777777777655
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.97 E-value=4.7 Score=33.52 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=73.6
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCC------------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGH------------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG 74 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 74 (369)
|++.++.. |-|+.+|..++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhC
Confidence 34444443 6789999999876544322 345677888888876 566778888888888888
Q ss_pred ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 036461 75 FVDKAKELFLKMKDENINPNVVTYNSLIHGFCY---ANDWNEAKCLFIEMM 122 (369)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 122 (369)
+.++..+.++++.... +-+...|...+..... .-.++....+|.+.+
T Consensus 80 ~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888899988762 3367777777765544 224556666665544
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.91 E-value=1.8 Score=32.44 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=68.8
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTW-----AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
.-+...|++++|..-|...++. +++.+. .|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4467889999999999998886 333322 34444557788899999999988888776 4455555566778999
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
...+++|+.-|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999886
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.86 E-value=1.8 Score=28.35 Aligned_cols=47 Identities=4% Similarity=0.008 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..+-++.+...++.|++......+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555556666677777777777777777777777777766643
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.76 E-value=0.21 Score=23.26 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.75 E-value=2.8 Score=30.31 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=22.9
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCcHHhH-HHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 211 CKNKEIEGALSLYSEMLSKGIKPDVVIY-NTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
...++.+++..++..+.-.. |..... ..-...+...|++.+|..+++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555555432 221111 1112233445555555555555544
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.68 E-value=8.8 Score=35.93 Aligned_cols=227 Identities=15% Similarity=0.087 Sum_probs=119.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChh-------hHHHHH-HHHHhCCChhHHHHHHHHHHHcC----CCccHHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVV-------SFNVIM-NELCKNGKMDEASRLLELMIQIG----VRPNAFVYNTL 171 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 171 (369)
......++.+|..++.++...-..|+.. .+..+- ......|+++.+.++.+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445788999999998886652232222 222222 23345788899998888776541 22345556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHH---HHHH--HHHHhhcCCh--HHHHHHHHHHHhCC--CC----CcHHhH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFS---YSIL--INGYCKNKEI--EGALSLYSEMLSKG--IK----PDVVIY 238 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~a~~~~~~~~~~~--~~----~~~~~~ 238 (369)
..+..-.|++++|..+..+..+..-..++.. |..+ ...+...|+. .+....+....... -. +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788888999999998887765422223332 2222 2334556632 22333333333221 01 112334
Q ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 036461 239 NTLFIGLFEI-HQVERAFKLFDEMQRHGVAADTWA--YRTFIDGLCKNGYIVEAVELFRTLRILKYELD----IRAYNCL 311 (369)
Q Consensus 239 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 311 (369)
..+..++.+. +...++..-+.-.......|-... +..++......|+.++|...++++......+. ..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444454441 111222222222222211121112 22567778889999999999988876543332 1121222
Q ss_pred HH--HHHcCCCHHHHHHHHHh
Q 036461 312 ID--GLCKSGRLKIAWELFRS 330 (369)
Q Consensus 312 ~~--~~~~~g~~~~a~~~~~~ 330 (369)
+. .....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23456777777666655
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.54 E-value=1.5 Score=33.40 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYN 99 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 99 (369)
.+..++.+.+.+...+|+...+.-.+.. |.|...-..++..++-.|++++|..-++-.-.. ...+...+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 4455677778888888888887777665 556677777888888888888887777665442 1223445565
Q ss_pred HHHHH
Q 036461 100 SLIHG 104 (369)
Q Consensus 100 ~l~~~ 104 (369)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55544
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.44 E-value=0.21 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 343 YNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+..+..++.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456677777788888877777654
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.29 E-value=5 Score=32.19 Aligned_cols=137 Identities=11% Similarity=0.104 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHh-CCCCCcHHhHHHHHHHHHh-cc-cHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 036461 216 IEGALSLYSEMLS-KGIKPDVVIYNTLFIGLFE-IH-QVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 216 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552222 1233466666666666554 11 12222233333332 2345778888899999999999999999
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh-----cccCCcccCHHHHHHHHHHHHh
Q 036461 292 LFRTLRIL-KYELDIRAYNCLIDGLCKSGRLKIAWELFRS-----LPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 292 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
+|+..... +...|...|...+......|+..-...+..+ +.+.++..+...-..+-+.+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99887755 4566888999999999999998888887765 3456666666666555555443
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.13 E-value=0.2 Score=35.80 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++...+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555556666777777777777655455566777777777777666666666651 111333455666777777
Q ss_pred HHHHHHHHHhccc
Q 036461 321 LKIAWELFRSLPR 333 (369)
Q Consensus 321 ~~~a~~~~~~~~~ 333 (369)
+++|.-++.++-.
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 7777777766543
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=2.3 Score=34.36 Aligned_cols=101 Identities=12% Similarity=-0.006 Sum_probs=61.7
Q ss_pred CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036461 232 KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG---VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAY 308 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 308 (369)
.....+...++.......+++.++..+-.+...- ..|+. +....++.+ -.-++++++.++..=++.|+.||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344455555555555667777777776665421 11111 122233333 234566777777777777888888888
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+.+++.+.+.+++.+|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888887777776666543
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.00 E-value=7.9 Score=33.82 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=122.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHH
Q 036461 92 NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTL 171 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (369)
+.|.....+++..+.....+.-...+..++..-| -+...|..++.+|... ..+.-..+|+++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4466777788888988888999999999998764 3667788888888887 667788888888887543 44444445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL 245 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 245 (369)
...|. .++.+.+...|.++...-++. -...|..+...- ..+.+..+.+..++... |...-...+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 54444 488888888888876543221 122444444321 34667777777777654 3333445555666778
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
....++++|++++..+.+++ ..|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88889999999999888775 33555555555443
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.90 E-value=0.27 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
++..+..++.+.|++++|.+.|+++....
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45567788899999999999999999865
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.57 E-value=0.61 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666777777777777766643
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.21 E-value=8.2 Score=32.48 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 198 HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
....++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777777888888888888888777643211 223333344555567777777777776665
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.18 E-value=0.73 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.04 E-value=2.8 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc---cc-------HHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCC
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI---HQ-------VERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNG 284 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 284 (369)
++.|.+.++.....++ .|...++.-..++... .+ +++|+.-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 4555555555444432 2555444444444332 22 23333344444443 344 356666666665433
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036461 285 ----Y-------IVEAVELFRTLRILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 285 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (369)
+ +++|...|+++... .|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 44555555555544 57777777666654
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.54 E-value=15 Score=34.48 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=104.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchH-------HHHHHH-HHHHhhcCChHHHHHHHHHHHhC----CCCCcHHhHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNV-------FSYSIL-INGYCKNKEIEGALSLYSEMLSK----GIKPDVVIYNTL 241 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 241 (369)
......++++|..++.++...-..|+. ..++.+ .......|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345568889999888887654212211 123322 23345678999999988887764 123345566677
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcC---HHHHHHH--HHHHHhCCCH--HHHHHHHHHHHHc---CCC---CCHHHH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTF--IDGLCKNGYI--VEAVELFRTLRIL---KYE---LDIRAY 308 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l--~~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~ 308 (369)
..+..-.|++++|..+..+..+..-.-+ ...+..+ ...+...|+. .+....+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788889999999988877655311122 2223333 3345667732 3333333333221 101 122344
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccc----CCcccCHHHH--HHHHHHHHhcCchHHHHHHHHHhh
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPR----GVLIADVVTY--NIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
..++.++.+ .+.+..-...-.+ ....|-.... ..|+.+....|+.++|...++++.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555554 3333333332222 2122222222 367778888999999998888775
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.08 E-value=5.6 Score=31.67 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=66.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhC-----CCCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDE-----NINPNV--------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVS 132 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (369)
-.+.+.-..|+..|++..++-.+. +...+. .....=|++++..++|.+++.+.-+.-+..-+.....
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI 120 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence 334444456777777766665432 011111 1112235677777777777776665544322223344
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH-----hcCChHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC-----LTGRVNRAEELF 188 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 188 (369)
...-+-.|.+.+.+..+.++-..-.+..-.-+..-|..++..|. -.|.+++|+++.
T Consensus 121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45555667777777777777766665422223333555554443 357777777766
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.72 E-value=3.2 Score=30.58 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh---cCC-------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR---TGH-------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC 71 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (369)
.|++-.+.-...+ |.|...++.-..++.. ..+ +++|+.-|++....+ |....++..+..++.
T Consensus 9 ~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 9 HARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHH
Confidence 3555555544444 5666665554444433 333 344555666666644 233567777777766
Q ss_pred hcC----C-------hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 72 KEG----F-------VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 72 ~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
..+ + +++|.+.|++..+ ..|+..+|+.-+.... +|-.+..++.+.+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 543 2 4455555555555 3678888887777653 3555555555543
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.63 E-value=1.1 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666665544
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.49 E-value=0.75 Score=24.82 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 036461 276 FIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+..+|...|+.+.|..+++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.48 E-value=3.7 Score=31.34 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY--ELDIRAYNCLIDG 314 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 314 (369)
|.+..++.+.+.+...+++...+.-++.. +.|...-..+++.++-.|++++|..-++-...... .+-...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788899999999988877764 44666777889999999999999988877765531 2334566666654
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.24 E-value=3.4 Score=33.87 Aligned_cols=90 Identities=14% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..|.++|++++|++.|.+..... +-|+.++..-..+|.+...+..|..=.......+ ..-...|..-+.+-.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 45778888888888888887755 3478888888888888888887777666655431 112233444444444
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 036461 107 YANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~ 124 (369)
..|...+|.+-++..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhhHHHHHHhHHHHHhh
Confidence 455666666666666553
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.17 E-value=0.22 Score=35.56 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.++..+.+.+.+.....+++.+...+...+....+.++..|.+.++.++...+++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456778888999999999999998766667888999999999998878888877621 1123346777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCch
Q 036461 285 YIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKM 356 (369)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 356 (369)
.++++..++.++....-- +..+...++++.|.++..+. +++..|..++..|...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 888888877765432211 11134455666666444333 3578899898888776653
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.79 E-value=16 Score=32.12 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
+.|......++..+.....+.-+..+..++...| .+...+..++++|... ..++-..+++++.+..+ +......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4466677888888988888888999999999876 4677888999999888 67788889998887753 33334433
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCC-----cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKP-----DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGL 280 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 280 (369)
+..+...++...+..+|.++..+-++. -...|..+... -..+.+....+...+... |...-...+..+-..|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 344444588999999999988752221 11234333322 145677777777777643 3333445566666788
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
....++.+|++++..+.+++ ..|..+-..++..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 89999999999999988776 456655556655443
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.60 E-value=1.5 Score=27.08 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=18.5
Q ss_pred cCCCHHHHHHHHHhcccCCcccC--HHHHHHHHHHHHhcCchHHHHH
Q 036461 317 KSGRLKIAWELFRSLPRGVLIAD--VVTYNIMIHALCADGKMDKARD 361 (369)
Q Consensus 317 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 361 (369)
...+.++|+..|++..+.-..+. -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443311111 1133344444555555555444
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.56 E-value=11 Score=30.25 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+....+.|...|.+.+|.++.+..+..+ +.+...+..++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445566777777777777777777664 456666777777777777755555555554
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=18 Score=32.48 Aligned_cols=151 Identities=17% Similarity=0.094 Sum_probs=93.5
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 109 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (369)
.-.|+++.|..++..+. ....+.+++-+.++|-.++|+++- +|+.. -.....+.|
T Consensus 597 vmrrd~~~a~~vLp~I~-------------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lg 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLG 651 (794)
T ss_pred hhhccccccccccccCc-------------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcC
Confidence 34567777666544432 234556666667777777776542 22221 123345678
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 110 DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
+++.|.++..+.. +..-|..|..+....+++..|.+.+..... |..|+-.+...|+.+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 8888887766543 556688888888888888888888876654 3345566667777766666666
Q ss_pred HHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
...+.| ..+... .+|...|+++++.+++..-
T Consensus 717 ~~~~~g-~~N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KNNLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-ccchHH-----HHHHHcCCHHHHHHHHHhc
Confidence 666655 333322 2455678888887776544
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.54 E-value=11 Score=30.10 Aligned_cols=120 Identities=9% Similarity=-0.030 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-----CCCCh--------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQG-----VQPNV--------VSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT 170 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (369)
...-..++..|+...++-.+.= ...+. .....-|++++..+++.++....-+..+.--+..+.+...
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3444567777777776654420 11111 1223447788899999998877766655433334556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh-----cCChHHHHHHH
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK-----NKEIEGALSLY 223 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 223 (369)
-|-.|.+.+.+..+.++-.......-.-+...|..+++.|.. .|.+++|.++.
T Consensus 124 CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777889999999999998888765333444557777776654 68999998876
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.47 E-value=3.7 Score=28.10 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
-.+.++.+...++-|++.....-++++.+-+++..|+.+|+-+...-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34566777788889999999999999999999999999999988654
No 343
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=10 Score=29.55 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhCCCH
Q 036461 209 GYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYI 286 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 286 (369)
-|.....++.|+..|.+.+.. .|+. .-|..=+.++.+..+++.+..--.+.++. .|+. .....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355556788888888777775 4555 34455666777788888887777776664 3443 3344556677778888
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 036461 287 VEAVELFRTLRI----LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSL 331 (369)
Q Consensus 287 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 331 (369)
++|+..+.+... ..+++-......|..+=-..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888887743 233334445555554433333334444544443
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.38 E-value=21 Score=32.99 Aligned_cols=182 Identities=16% Similarity=0.076 Sum_probs=108.6
Q ss_pred HHHHHHHHHH-cCCCcCHh--HHHHHHHHHH-hcCChhHHHHHHHHHHcCCCCCCcccccc-----hhhHHHHHHHHHhc
Q 036461 3 AAALFMKLRV-FGCEPNVF--TYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPN-----TVTYTTIIDGLCKE 73 (369)
Q Consensus 3 A~~~~~~~~~-~g~~~~~~--~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 73 (369)
|++.++-+.+ ..++|..+ ++..+...+. ...+++.|...+++...... +++ -..-..++..+.+.
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHhc
Confidence 5677777773 33444433 4556666666 67899999999998865541 222 12234566777777
Q ss_pred CChHHHHHHHHHhHhC--C--CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hC
Q 036461 74 GFVDKAKELFLKMKDE--N--INPNVVTYNSL-IHGFCYANDWNEAKCLFIEMMDQG---VQPNVVSFNVIMNELC--KN 143 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~ 143 (369)
+... |...+++.++. + ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 6555 99998887653 1 11222333333 333334479999999998886542 2233334444444433 44
Q ss_pred CChhHHHHHHHHHHHcC---------CCccHHHHHHHHHHH--HhcCChHHHHHHHHHH
Q 036461 144 GKMDEASRLLELMIQIG---------VRPNAFVYNTLMDGF--CLTGRVNRAEELFVSM 191 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 191 (369)
+..+.+.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65677777777764321 134566777777655 4567777777666655
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.36 E-value=6 Score=32.54 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=50.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
-.+.|.+.|.+++|+.+|....... +.++..+..-..+|.+...+..|..-....+..+- .-...|+.-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777766553 33666666666777777777666655555444310 011223333333333444
Q ss_pred HHHHHHHHHHHHH
Q 036461 251 VERAFKLFDEMQR 263 (369)
Q Consensus 251 ~~~a~~~~~~~~~ 263 (369)
..+|.+-++..++
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5555555555444
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=13 Score=33.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
.-|..|.++....+++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444444444445555444444443
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=87.23 E-value=5.7 Score=25.23 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
++-++++.+.+.|+ -+......+-.+-...|+.+.|.+++..+. ++ +..|..++.++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhhc
Confidence 35678888888874 344444444444446799999999999988 65 4678888999888887665543
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.22 E-value=14 Score=29.77 Aligned_cols=115 Identities=11% Similarity=0.058 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhHh-CCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 75 FVDKAKELFLKMKD-ENINPNVVTYNSLIHGFCY-AN-DWNEAKCLFIEMMD-QGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 75 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
.+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 1234466666666665554 21 11112222222221 123455556666666677777777777
Q ss_pred HHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 151 RLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
++++..... +...|...|..+++.....|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665544 344466666666776666676665555544
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.06 E-value=2.6 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=6.6
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 036461 104 GFCYANDWNEAKCLFIEM 121 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~ 121 (369)
+|...|+.+.|..+++++
T Consensus 8 ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHcCChHHHHHHHHHH
Confidence 333333333333333333
No 350
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=13 Score=29.04 Aligned_cols=81 Identities=16% Similarity=0.059 Sum_probs=46.4
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH-hHHHHHHHHHhc
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV-TYNSLIHGFCYA 108 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 108 (369)
...++..|+.-|.+.+..+ |++ .-|..-+.++.+..+++.+..--.+.++. .||.. ....+.......
T Consensus 22 ~~k~y~~ai~~y~raI~~n--------P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN--------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred chhhhchHHHHHHHHHhcC--------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhh
Confidence 3345666666666666644 443 44555666666666676666655555553 33432 233444555566
Q ss_pred CCHHHHHHHHHHH
Q 036461 109 NDWNEAKCLFIEM 121 (369)
Q Consensus 109 ~~~~~a~~~~~~~ 121 (369)
..+++|+..+.+.
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 6667776666665
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.82 E-value=11 Score=28.28 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (369)
+...++..+++++|...++.........+ ..+--.|.+.....|.+|.|..+++...+.+. .......-...+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 45567778888888888887775411111 11223455667788888999888887766432 233344556788888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 036461 284 GYIVEAVELFRTLRILK 300 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~ 300 (369)
|+-++|+.-|+......
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999998888764
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.68 E-value=14 Score=29.32 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=126.1
Q ss_pred CCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHc---CC
Q 036461 89 ENINPNVVTYNSLIHG-FCYANDWNEAKCLFIEMMDQGVQPNVV---SFNVIMNELCKNGKMDEASRLLELMIQI---GV 161 (369)
Q Consensus 89 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 161 (369)
.+..||+..=|..-.. -.+..++++|+.-|++..+.....-.. ...-++....+.+++++....|.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666544332211 123457999999999988753232333 3345678889999999999999888642 11
Q ss_pred --CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCchHH----HHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--
Q 036461 162 --RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-GCKHNVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIK-- 232 (369)
Q Consensus 162 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 232 (369)
.-+....+.++.....+.+.+--..+++.-... .-..+.. +-..+...|...+++.+..++++++......
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124456677777777777777666666543321 0011111 2355777888888888888888888765211
Q ss_pred --Cc-------HHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH-----HhCCCHHHHHHH-HHHH
Q 036461 233 --PD-------VVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGL-----CKNGYIVEAVEL-FRTL 296 (369)
Q Consensus 233 --~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~g~~~~a~~~-~~~~ 296 (369)
.| ...|..-++.|....+-.....+++..+... .-|.+... .+++-| .+.|.+++|..- |+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 11 2456666777877777778888888765421 23444433 344433 467788887654 4444
Q ss_pred H
Q 036461 297 R 297 (369)
Q Consensus 297 ~ 297 (369)
.
T Consensus 259 K 259 (440)
T KOG1464|consen 259 K 259 (440)
T ss_pred h
Confidence 3
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.35 E-value=7.9 Score=26.62 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
..+-++.+...++.|++......+++|.+.+|+..|.++++-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444555555666666666666666666666666666666653
No 354
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.08 E-value=19 Score=30.05 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 197 KHNVFSYSILINGYCKNKE------------IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
|.|+.+|-.++..--..-. .+.-+.+++++++.++ .+......++..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667777776654322211 2334455555555532 24444555555555555555556666665554
Q ss_pred CCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Q 036461 265 GVAADTWAYRTFIDGLCK---NGYIVEAVELFRTL 296 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 296 (369)
. +-+...|...+..... .-.++....+|.+.
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 2244455555544332 22344444444433
No 355
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.43 E-value=21 Score=30.03 Aligned_cols=67 Identities=12% Similarity=-0.027 Sum_probs=51.5
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH---NVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.....++..+...+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678888999999999999999999988754111 344445556667778999999999988887
No 356
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=16 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.3
Q ss_pred cCChHHHHHHHHHhH
Q 036461 73 EGFVDKAKELFLKMK 87 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~ 87 (369)
.+.+++|-++|.+.-
T Consensus 27 ~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA 41 (288)
T ss_pred CcchHHHHHHHHHHH
Confidence 346777777766543
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.99 E-value=18 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=15.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 036461 204 SILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34566777778888777665444
No 358
>PRK09687 putative lyase; Provisional
Probab=84.92 E-value=19 Score=29.23 Aligned_cols=234 Identities=13% Similarity=0.027 Sum_probs=130.7
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCChhhH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW----NEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
+|.......+..+...|. +.+...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666664 3344444444433 2555545555666666653 4566667666433 3455555
Q ss_pred HHHHHHHHhCCCh-----hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 036461 134 NVIMNELCKNGKM-----DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILIN 208 (369)
Q Consensus 134 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (369)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555554321 223333333332 2355566666777777776 4555555555543 33444444555
Q ss_pred HHhhcC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 036461 209 GYCKNK-EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 209 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 287 (369)
++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 24456666666664 34666666777777777774 4555555555432 2 234667777788875
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
+|...+..+... .+|..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777754 457777766666654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.45 E-value=4.8 Score=24.99 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=27.2
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELD--IRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
...+.++|+..|+...+....+. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776665432221 23455666677777777666554
No 360
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.15 E-value=34 Score=31.33 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 221 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
...+.++.+-+..+......++..|.+.|-.+.+..+.+.+-..-. ...-|...+..+.++|+......+...+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333344332333444555666677777777777776665543311 23345555666666776666665555554
No 361
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.09 E-value=31 Score=31.58 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
....++..|.+.|-.+.|.++.+.+
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445555555555555554444
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.84 E-value=29 Score=30.39 Aligned_cols=279 Identities=10% Similarity=-0.038 Sum_probs=140.3
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHH--HHHHHHHHHhcCCCC-----------ChhhHHHHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE--AKCLFIEMMDQGVQP-----------NVVSFNVIM 137 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~-----------~~~~~~~l~ 137 (369)
...+.++..++.+..+...|.......++.-...|.+.|.... -.+-+..+...-..| ....+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 3467899999999999988877667778877778888775432 222232222110011 111122222
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHH---HhcC--------------
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPN-----AFVYNTLMDGFCLTGRVNRAEELFVSM---ESMG-------------- 195 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~-------------- 195 (369)
-.|.....+..|+++.......- .|- ..........+......++|+.++.-+ ...+
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 23444455566666555444321 110 111122233455555666666655443 2211
Q ss_pred ---CCchHHHH------------HHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH-HHHHHhcccHHHHHHHHH
Q 036461 196 ---CKHNVFSY------------SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL-FIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 196 ---~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 259 (369)
.+|....- ..-+.++.+..+...+..-.+..... .-+...+..| -+.+.-.|++.+|.+++.
T Consensus 187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 01111110 11112222222222222221111111 1111111111 233456789999988876
Q ss_pred HHH---HcCCCcCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCCH----------HHHHHHHHH
Q 036461 260 EMQ---RHGVAADTW-----AYRTFIDGLCKNGYIVEAVELFRTLRI-------LKYELDI----------RAYNCLIDG 314 (369)
Q Consensus 260 ~~~---~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~----------~~~~~l~~~ 314 (369)
..- ..|...++. .++.+.....+.|.+..+..+|.++.+ .|++|.. .......-.
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH
Confidence 532 122112221 234555555666777777777766653 3433321 222334556
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhc
Q 036461 315 LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCAD 353 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (369)
|.+.|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 88999999999999988764 456889999999998643
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.33 E-value=13 Score=26.03 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=44.1
Q ss_pred CcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYE-LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.++..+--.+..++.+.. +..+.+.+++.+.+...+ -.......|.-++.+.|+++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455556666666776654 456677788877752212 13344455666788888888888888887765
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.88 E-value=8.6 Score=34.22 Aligned_cols=99 Identities=16% Similarity=-0.006 Sum_probs=58.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.|+...|...+.......+.-..+....|.....+.|-.-.|-.++.+.+... ...+-++..+..++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46666677666665554332233344455555566666666666666655543 23344566677777777778888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~ 313 (369)
|+.+.+.. +.+...-+.|..
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHH
Confidence 77777654 344555555443
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.36 E-value=3.4 Score=19.27 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.+|..+...+...|+++.|...|+...+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467788889999999999999999988754
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.64 E-value=26 Score=28.34 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
++......|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44555667778888888888888887776 6677777888888888888666666665553
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=81.60 E-value=3.3 Score=24.41 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
++....+++.+... ..|....-.++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 23444444556666666666666666665543
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.33 E-value=26 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=17.9
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 268 ADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35677778888888888888877655
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.12 E-value=12 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
.|-....|...-.+.-.|+...|...+..+.........+....|.+...+.|..-.|..++.+..... ...+-++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 343334443333334456666666666655543222222233444555555566666666666655544 3344455556
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..++....++++|++.|++..+..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC
Confidence 666666667777777776666653
No 370
>PRK09687 putative lyase; Provisional
Probab=81.01 E-value=28 Score=28.29 Aligned_cols=234 Identities=14% Similarity=0.043 Sum_probs=145.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCccHHHH
Q 036461 93 PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM----DEASRLLELMIQIGVRPNAFVY 168 (369)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 168 (369)
+|.......+..+...|. ..+...+..+... ++...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 366666666666766664 3444444445443 3556666667777777764 4677777766443 3566666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 169 NTLMDGFCLTGRV-----NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 169 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666555421 234444444333 3456666677778877776 4667777777663 34455555555
Q ss_pred HHHhcc-cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 244 GLFEIH-QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 244 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
++...+ +.+.+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 565543 23456666666664 35777888888899998884 5555555555432 2 345677888888885
Q ss_pred HHHHHHHhcccCCcccCHHHHHHHHHHHH
Q 036461 323 IAWELFRSLPRGVLIADVVTYNIMIHALC 351 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (369)
+|...+.++.+. .||..+-...+.++.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888864 457777666666664
No 371
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.95 E-value=38 Score=29.77 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHH
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC--KSGRLKIAWELFRSLPRGVLIADVVTYNIMIHAL 350 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (369)
-+.++..+.+.|-..+|...+..+.... +|+...|..+++.-. .+-+...+..+|+.+...-- .|+..|...+..-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEE 540 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhh
Confidence 3456677778888999999999988765 677778877776421 12226777888888765422 5788888877777
Q ss_pred HhcCchHHHHHHHHHh
Q 036461 351 CADGKMDKARDLFLDM 366 (369)
Q Consensus 351 ~~~g~~~~A~~~~~~m 366 (369)
...|..+.+-.++.+.
T Consensus 541 ~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRA 556 (568)
T ss_pred ccCCCcccccHHHHHH
Confidence 7788877776665443
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.78 E-value=27 Score=27.89 Aligned_cols=204 Identities=15% Similarity=0.155 Sum_probs=129.7
Q ss_pred cccchhhHHHHHHH-HHhcCChHHHHHHHHHhHhCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC--
Q 036461 56 CKPNTVTYTTIIDG-LCKEGFVDKAKELFLKMKDENINPNVV---TYNSLIHGFCYANDWNEAKCLFIEMMDQ---GV-- 126 (369)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-- 126 (369)
..||+..=|..-.+ -.+...+++|+.-|++..+.......+ ....++....+.+++++....|.++..- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 35666554433221 124558999999999998753222333 3456788899999999999999988642 11
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----C
Q 036461 127 QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI-GVRPNA----FVYNTLMDGFCLTGRVNRAEELFVSMESMGC----K 197 (369)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 197 (369)
..+..+.+.++.......+.+....+|+.-++. .-..+. .|-..+...|...+++.+..++++++..... .
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 124456677777777677777666666554332 001122 2335678888999999999999998865421 1
Q ss_pred ch-------HHHHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHH-----HhcccHHHHHHHHHH
Q 036461 198 HN-------VFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL-----FEIHQVERAFKLFDE 260 (369)
Q Consensus 198 ~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~ 260 (369)
.| ...|..-++.|....+-.+...++++...- ...|.+.... +++-| .+.|++++|..-|-+
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHH
Confidence 12 345777788888888888888888887653 2344554443 33433 466788877654433
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.57 E-value=24 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+.....+.|+.++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555556666666666666554
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.24 E-value=50 Score=30.61 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=115.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHH-hcCChHHHHHHHHHhHhCCCCC
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLC-KEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
.+...|..+|. .|++.++.+.+... ++|. ..+...++..+. ...+++.|...+++.....-.+
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~-----l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~ 93 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFK-----LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH 93 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34455666655 45667777774321 3443 445666777776 5789999999999875432222
Q ss_pred CHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHH-HHHHHhCCChhHHHHHHHHHHHcC---
Q 036461 94 NVV-----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ----PNVVSFNVI-MNELCKNGKMDEASRLLELMIQIG--- 160 (369)
Q Consensus 94 ~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (369)
+.. +...++..+.+.+... |...+++.++.--. +-...|..+ +..+...+++..|.+.++.+....
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 221 2234567777776655 99999887764211 122223333 222333479999999998877542
Q ss_pred CCccHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcC---------CCchHHHHHHHHHHH--hhcCChHHHHHHHHHHH
Q 036461 161 VRPNAFVYNTLMDGFC--LTGRVNRAEELFVSMESMG---------CKHNVFSYSILINGY--CKNKEIEGALSLYSEML 227 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 227 (369)
..|...++..++.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344455555555443 4565677777777663321 134556677666655 45777767666655553
No 375
>PRK10941 hypothetical protein; Provisional
Probab=79.84 E-value=30 Score=27.90 Aligned_cols=55 Identities=9% Similarity=-0.135 Sum_probs=25.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
-.+|.+.++++.|+.+.+.+.... |.++.-+.--.-.|.+.|.+..|..=++..+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334444555555555555554443 3334444444444455555555544444443
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.03 E-value=22 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 036461 277 IDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457777778888877777765
No 377
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.28 E-value=36 Score=27.81 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036461 75 FVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQ 127 (369)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 127 (369)
+..+|.++|....+.|. ......|...|.. ..+..+|..+|++..+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 45566666665555442 2222334444433 23566666666666665533
No 378
>PRK12798 chemotaxis protein; Reviewed
Probab=78.06 E-value=44 Score=28.73 Aligned_cols=198 Identities=14% Similarity=-0.002 Sum_probs=105.3
Q ss_pred hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhhcCChHH
Q 036461 142 KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF-CLTGRVNRAEELFVSMESM--GCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
-.|+..++.+.+..+.....++....+..|+.+- ....+..+|+++|+...-. |.-........-+....+.|+.++
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 3577777877777776666666666666666553 3445677888888776543 111122334444555667778777
Q ss_pred HHHHHHHHHhCCC-CCc-HHhHHHHHHHHHhcccHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGI-KPD-VVIYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEAVELFRT 295 (369)
Q Consensus 219 a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 295 (369)
+..+-.+...+-. .|- ...+..+..++.+..+-..-.. +..+... ...--...|..+.+.-.-.|+.+-|.-.-++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7766666555411 111 1122333334444333222222 2223222 1112245677777777778888888777777
Q ss_pred HHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCH
Q 036461 296 LRILKYELDIR---AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADV 340 (369)
Q Consensus 296 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 340 (369)
.....-..+.. ....-.-+-.-..+++++.+.+.++....+.|..
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 76553121111 1111111123355677888888777766555443
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.62 E-value=12 Score=22.04 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=10.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH
Q 036461 205 ILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
.++.++...|++++|.+++.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.73 E-value=13 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 302 ELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.|++.++..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678888888888888888888888888777664
No 381
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.27 E-value=24 Score=25.32 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG 74 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 74 (369)
++.+.+.+.|+++++. -..+++.+.+.++.-.|.++++.+.+.+ .+-+..|....+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~------p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG------PGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC------CCCCHhHHHHHHHHHHHCC
Confidence 4566778888877666 3567888888888899999999999987 3444555555555555555
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.51 E-value=27 Score=26.03 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHH-----HHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 286 IVEAVELFRTLRILKYELD--IRAY-----NCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++.|+.+|+.+.+.-..|+ .... ...+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4566667766665432221 1111 22345799999999999999998773
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.26 E-value=23 Score=28.21 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccc----CC-cccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLPR----GV-LIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.++.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+.-+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555521 11 1123334455556666667766666655444
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.06 E-value=26 Score=24.65 Aligned_cols=67 Identities=6% Similarity=0.031 Sum_probs=34.8
Q ss_pred cchhhHHHHHHHHHhcC---ChHHHHHHHHHhHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 58 PNTVTYTTIIDGLCKEG---FVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
++..+...+..++.+.. +..+.+.+++.+.+... ........-|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44455555555555544 34455556666654211 112233334455666666666666666666654
No 385
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.03 E-value=38 Score=26.53 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHHHc--CCCccHH---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 036461 144 GKMDEASRLLELMIQI--GVRPNAF---VYNTLMDGFCLTGRVNRAEELFVSMESMGCKH 198 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (369)
.++++|+..|+..-+. |-..+.. .+.-+...-...+++.+|+++|+++....+..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666666555432 1111111 12222333455677777777777776554333
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.71 E-value=54 Score=28.15 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCcHH--hHHHHHHHHH--hcccHHHHHHHHHHHHHc
Q 036461 209 GYCKNKEIEGALSLYSEMLSKGIKPDVV--IYNTLFIGLF--EIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 264 (369)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677777888877777776 444333 3444444443 345566777777766553
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.57 E-value=11 Score=28.60 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
++..++..+. .|++.+|..++..+...|+.++|.++.+++....
T Consensus 131 ~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 131 IEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444555543 7999999999999999999999999999999865
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.20 E-value=23 Score=23.64 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=49.0
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 111 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (369)
....++|..+.+.+...+ .....+-..-+..+.+.|+++.|+ .. -. ....||...|-.|. -.+.|--
T Consensus 19 ~HcH~EA~tIa~wL~~~~-------~~~E~v~lIr~~sLmNrG~Yq~AL--l~-~~-~~~~pdL~p~~AL~--a~klGL~ 85 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-------EMEEVVALIRLSSLMNRGDYQEAL--LL-PQ-CHCYPDLEPWAALC--AWKLGLA 85 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-------TTHHHHHHHHHHHHHHTT-HHHHH--HH-HT-TS--GGGHHHHHHH--HHHCT-H
T ss_pred hHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHH--Hh-cc-cCCCccHHHHHHHH--HHhhccH
Confidence 456788888888888755 222333334455677889999882 22 22 22467888886554 4577888
Q ss_pred HHHHHHHHHHHhcC
Q 036461 112 NEAKCLFIEMMDQG 125 (369)
Q Consensus 112 ~~a~~~~~~~~~~~ 125 (369)
+++...+.++...|
T Consensus 86 ~~~e~~l~rla~~g 99 (116)
T PF09477_consen 86 SALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888877665
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.69 E-value=90 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
|..|+..|...|+.++|++++.....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45555555566666666666655554
No 390
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=73.55 E-value=29 Score=24.39 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYE 302 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 302 (369)
.+..++-.+...|+++.|+.+.+.++++|.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 5555566667777777777777777777643
No 391
>PRK10941 hypothetical protein; Provisional
Probab=73.02 E-value=48 Score=26.78 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQG-VQPNVVSFNVIMNEL 140 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 140 (369)
..+.+-.+|.+.++++.|+.+.+.+..-. |.++.-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34556667788888888888888887752 3456666667777888888888888888776552 223444444444433
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.68 E-value=19 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=31.9
Q ss_pred HHhCCCHHHHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 280 LCKNGYIVEAVELFRTLRIL----KYELD----IRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
..+.|++.+|.+.+.+..+. +.... ......+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678888886666555432 21110 122233445566778888888887777664
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.24 E-value=62 Score=27.72 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGV--RPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
.+.-+...|...|+++.|++.|.+....-. +-....|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566677777777777777776544311 11234455555555666776666666555543
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.92 E-value=3 Score=34.13 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=49.4
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
..|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|++=++..+..+.. +..-|-.--.+-...|+++++..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3455666666666665542 334555555556666666666666666665554211 12223333333344566666666
Q ss_pred HHHHHHHcCCCccH
Q 036461 152 LLELMIQIGVRPNA 165 (369)
Q Consensus 152 ~~~~~~~~~~~~~~ 165 (369)
.+....+.+..+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 66666666544433
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.63 E-value=14 Score=31.91 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=73.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
+.-+...++++.|+.++.++++.+ +.....|..-..++.+.+++..|+.=..++++.. +-....|..-..++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-------PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAV 82 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-------CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHH
Confidence 445566788999999999999866 2345555556688888999999888888877753 22344555555667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNEL 140 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (369)
...+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 777778888888887765 356666655555544
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.41 E-value=25 Score=22.80 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=33.8
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCccccc----chhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKP----NTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
..+.|++..|++.+.+......... ... -......+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~--~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN--NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899998666555543321100 111 122334455566677888888888887754
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.40 E-value=73 Score=28.15 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=64.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhC---CCCCc-----HHhHHHHHHHHHhcccHHHHHHHHHHHHH-------cCCCcCH--
Q 036461 208 NGYCKNKEIEGALSLYSEMLSK---GIKPD-----VVIYNTLFIGLFEIHQVERAFKLFDEMQR-------HGVAADT-- 270 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 270 (369)
+.+.-.|++.+|.+++...--. |...+ -..+|.+...+.+.+.+..+..+|....+ .|..|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3445578888888876543221 21111 12235555555566666666666655543 3433321
Q ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 271 --------WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 271 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
.......-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 22223444567788999999988887753 25688888888888864
No 398
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=71.12 E-value=24 Score=22.44 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.++|+-....|+..|+.+|..+++.+.-+=-+....+++..+....
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 3788888999999999999999998877777888888888887644
No 399
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=70.79 E-value=34 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCC
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDENI 91 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (369)
.++--+...|+++.|+++.+-+++.|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 333344556666666666666665554
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.80 E-value=10 Score=18.04 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
|+.+.|..+|+++.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-------~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-------PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-------CCChHHHHHHHH
Confidence 56788999999988764 455667766654
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.72 E-value=96 Score=28.84 Aligned_cols=88 Identities=8% Similarity=0.038 Sum_probs=36.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHh---
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCK--- 282 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 282 (369)
...+.-.|.++.|+.++.. ..+...+...+...+..|.-..-.+... ..+.... -.|.+-.+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567888888888776 1122334444444443332222111111 2222111 01112446667776664
Q ss_pred CCCHHHHHHHHHHHHHc
Q 036461 283 NGYIVEAVELFRTLRIL 299 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~ 299 (369)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45777787777666544
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.49 E-value=59 Score=28.09 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCC-CCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNG-EFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
+...|++.++-.||+..|+++++.+.-... -+.....-.+.++.-+.-+|.-.+++.+|.+.|..+.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999987654221 11221233467788888999999999999999998753
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.22 E-value=50 Score=28.51 Aligned_cols=24 Identities=21% Similarity=0.103 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHH
Q 036461 342 TYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
++..+.-+|.-.+++.+|++.|..
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555544
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.11 E-value=74 Score=27.31 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=95.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---------CCCcc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ--GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---------GVRPN 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 164 (369)
..+.-+...|...|+++.|++.|.+.+.- ........|..++....-.|+|.....+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45677888899999999999999996542 11223455667777778889988888887777654 12233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------C-CchHHHHHHHHHHHhhcCChHHHHH-----HHHHHHhCCCC
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMG------C-KHNVFSYSILINGYCKNKEIEGALS-----LYSEMLSKGIK 232 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~ 232 (369)
...+..+... ..+++..|.+.|-...... + +.|..+|. .+.++..-++-+--.. .|+...+.
T Consensus 231 l~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3344444443 3347777777665543221 1 22344443 3333333222222111 22222222
Q ss_pred CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc-----CCCcCHHHHHHHH
Q 036461 233 PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH-----GVAADTWAYRTFI 277 (369)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 277 (369)
.+.....+..-| .+.+..++++++++..+ -+.|++.++-.+|
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 233333444433 45788888888877643 2344554444444
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.88 E-value=13 Score=32.21 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHh-HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVI-YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 285 (369)
+..+...++++.|..++.++++. .|+... |..=..++.+.+++..|+.=+..+++.. +--...|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 33445566777777777777765 343332 2222356667777777766666665543 1112223333345555566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036461 286 IVEAVELFRTLRILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (369)
+.+|...|+..... .|+..-+...+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666666666544 45555444444433
No 406
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.83 E-value=87 Score=27.66 Aligned_cols=335 Identities=9% Similarity=-0.022 Sum_probs=174.3
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhC--CCCC-CHHhHHHHHHHHH
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDE--NINP-NVVTYNSLIHGFC 106 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~ 106 (369)
-..+++.|..-+++........+........++..|.+++.... .+..+..++++.++. +.+- .......|+..+.
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 35678888887777654332110001122356777888888776 788888888888763 2220 1111224566777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH------HHhCCChh---HHHHHHHHHHHcCCCccHHH------H--H
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE------LCKNGKMD---EASRLLELMIQIGVRPNAFV------Y--N 169 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~---~a~~~~~~~~~~~~~~~~~~------~--~ 169 (369)
-..++..|.+++.---+. -.+-...|..++-. .....+.. .+......+.+. ..+|... | +
T Consensus 139 idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~ 216 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLV 216 (629)
T ss_pred hhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHH
Confidence 778888888875332211 11222233322222 22233433 444444455543 2334321 2 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc---CC------------CchHHHHHHH-------------HHHHhhcCChHHHHH
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESM---GC------------KHNVFSYSIL-------------INGYCKNKEIEGALS 221 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l-------------~~~~~~~~~~~~a~~ 221 (369)
.-+..|...|+...+...++++... +. .|.+..+..+ ...-.-.|-+++|.+
T Consensus 217 lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K 296 (629)
T KOG2300|consen 217 LQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQK 296 (629)
T ss_pred HHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHH
Confidence 2234456678888777777766432 11 1112111111 111112344555555
Q ss_pred HHHHHHhC----CCCC-cHHhHH--------HHHHHHHhcccHHHHHHHHHHHHHcC-CCcCH--------HHHHHHHHH
Q 036461 222 LYSEMLSK----GIKP-DVVIYN--------TLFIGLFEIHQVERAFKLFDEMQRHG-VAADT--------WAYRTFIDG 279 (369)
Q Consensus 222 ~~~~~~~~----~~~~-~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~~l~~~ 279 (369)
+-++++.. ...+ ....++ .++.+-.-.|++.+|++-+..|.+-- -.|.+ .....+...
T Consensus 297 ~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGly 376 (629)
T KOG2300|consen 297 YTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLY 376 (629)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhH
Confidence 55544432 1111 222222 22333345789999998888887621 12221 122233444
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHhcccCCccc-CH-----HHHHHHHHHHH
Q 036461 280 LCKNGYIVEAVELFRTLRILKYELDIRAY--NCLIDGLCKSGRLKIAWELFRSLPRGVLIA-DV-----VTYNIMIHALC 351 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~ 351 (369)
+...|.++.|..-|....+.-...+...+ ..++..|.+.|+.+.-.++++.+-..+-.+ .. ..+....-...
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 56778899999988887765434444333 345667899999888888887765432111 11 11222222345
Q ss_pred hcCchHHHHHHHHHhh
Q 036461 352 ADGKMDKARDLFLDME 367 (369)
Q Consensus 352 ~~g~~~~A~~~~~~m~ 367 (369)
.++++.||...+++-.
T Consensus 457 ~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETL 472 (629)
T ss_pred HhccHHHHHHHHHHHH
Confidence 7899999998887643
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.76 E-value=43 Score=24.03 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=27.0
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 120 EMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
.+.+.|.+++.. -..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444443332 23344445555555555555555555544444444333344444433
No 408
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.61 E-value=11 Score=22.46 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=41.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
.|....++.++...++..-.++++..+.++...+ .-+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-------~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-------SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999988 45677777777777654
No 409
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.92 E-value=64 Score=29.73 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=52.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChH------HHHHHHHHhHhCCCCCCHHh
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD------KAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 97 (369)
+|+.+|...|++.++.++++.....+.. -+.-...+|..++...+.|+++ .|.+.+++.. +.-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 8999999999999999999999876511 1122456788888888888765 3444444433 3346677
Q ss_pred HHHHHHHHH
Q 036461 98 YNSLIHGFC 106 (369)
Q Consensus 98 ~~~l~~~~~ 106 (369)
|..|+++..
T Consensus 106 ~all~~~sl 114 (1117)
T COG5108 106 YALLCQASL 114 (1117)
T ss_pred HHHHHHhhc
Confidence 766665443
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.90 E-value=31 Score=22.21 Aligned_cols=30 Identities=27% Similarity=0.171 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
|......+...+...|++++|++.+-.+.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444445555555555554444443
No 411
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.96 E-value=4.4 Score=33.22 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=85.7
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC-HHhHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN-VVTYNSLIHGF 105 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 105 (369)
.-....|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++=+...... .|| ..-|-.--.+.
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~ln-------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELN-------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHhcCcchhhhhcccccccccC-------CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHH
Confidence 33456789999999999999987 677788888888999999999999988888775 333 33454455556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
.-.|+|++|.+.+....+.+..+....+ +=...-+.+..++-...+++..+
T Consensus 193 rllg~~e~aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHhhchHHHHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 6689999999999999988765554433 33333344444444444444433
No 412
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.87 E-value=2.1e+02 Score=31.26 Aligned_cols=288 Identities=8% Similarity=-0.048 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|..+...|...++++....+...-.. ++. +..-+......|++..|...|+.+.+.+ ++....++.
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a-----------~~s-l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g 1488 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFA-----------DPS-LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSG 1488 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhc-----------Ccc-HHHHHHHHHhhccHHHHHHHHHHhhcCC-Cccccchhh
Confidence 344444588888888887777664111 122 2333444566799999999999999874 345778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH--HHHHHHh
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV-IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT--LMDGFCL 177 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~ 177 (369)
++......+.+...+...+-..... .+....++. -..+--+.++++....... .. +..+|.. ++....+
T Consensus 1489 ~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~ 1560 (2382)
T KOG0890|consen 1489 VLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLR 1560 (2382)
T ss_pred HHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHh
Confidence 8888778888888877666655432 222223322 2333456677777666655 11 1112221 2333222
Q ss_pred cC--ChHHHHHHHHHHHhcC--------CC-chHHHHHHHHHHHhhcCChHHHHHHHHHHHh-CCCCCcHHhHHHHHHHH
Q 036461 178 TG--RVNRAEELFVSMESMG--------CK-HNVFSYSILINGYCKNKEIEGALSLYSEMLS-KGIKPDVVIYNTLFIGL 245 (369)
Q Consensus 178 ~~--~~~~a~~~~~~~~~~~--------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 245 (369)
.. +.-.-.+..+.+.+.- .. .-...|..++..+.-..-.... +.+..... .....+..-|..-+..-
T Consensus 1561 ~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~t 1639 (2382)
T KOG0890|consen 1561 NKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI-EELKKVSYDEDSANNSDNWKNRLERT 1639 (2382)
T ss_pred hcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-HHhhccCccccccccchhHHHHHHHh
Confidence 22 2111112222222111 00 1112344444333221111111 11100000 00011111111111111
Q ss_pred HhcccHHHHHHHHHH-HHHcCCC-----cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 246 FEIHQVERAFKLFDE-MQRHGVA-----ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
....+..+-+--+++ +...... --...|....+....+|.++.|...+-.+.+.+ -+..+-..+..+...|
T Consensus 1640 q~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~g 1716 (2382)
T KOG0890|consen 1640 QPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTG 1716 (2382)
T ss_pred chhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhc
Confidence 111111111111111 1111111 124567777888888999999988776666654 3445566677788899
Q ss_pred CHHHHHHHHHhccc
Q 036461 320 RLKIAWELFRSLPR 333 (369)
Q Consensus 320 ~~~~a~~~~~~~~~ 333 (369)
+-..|+.++++..+
T Consensus 1717 d~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1717 DELNALSVLQEILS 1730 (2382)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988764
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.85 E-value=87 Score=26.94 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHH--HHHHHHHHHhh--cCChHHHHHHHHHHHhC
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVF--SYSILINGYCK--NKEIEGALSLYSEMLSK 229 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 229 (369)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999886 455544 44555555543 67889999999988775
No 414
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.39 E-value=37 Score=22.45 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 036461 250 QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFR 329 (369)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 329 (369)
..++|..+-+-+...+-. ...+-..-+..+.+.|++++|..+.+.. ..||...|.+|.. .+.|-.+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 456676666665554311 1222223344667788888887776654 2567776665543 45566666666665
Q ss_pred hcccCC
Q 036461 330 SLPRGV 335 (369)
Q Consensus 330 ~~~~~~ 335 (369)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 665554
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.46 E-value=25 Score=28.58 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHH
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSY 203 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (369)
|+..|....+.||+++|+.++++..+.|...-..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 446666667777777777777777766654433333
No 416
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.32 E-value=80 Score=25.97 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+|+.+.+.++.|.-.++..+.-.+.+.=.+...+.+|+.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444455555555444
No 417
>PRK12798 chemotaxis protein; Reviewed
Probab=64.24 E-value=96 Score=26.82 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=111.5
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCChhHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC-YANDWNEAKCLFIEMMDQ--GVQPNVVSFNVIMNELCKNGKMDEA 149 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 149 (369)
.|+..++.+.+..+.....++....|..|+.+-. ...++..|+++|+...-. |--........-+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6889999999999887777878888877776544 445889999999887653 1111223445555667788888877
Q ss_pred HHHHHHHHHc-CCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 150 SRLLELMIQI-GVRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 150 ~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
..+-...... ...|-.. .+..+...+.+.++-..-..+.+.+....-..-...|..+...-.-.|+.+-|...-.+..
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 6655544433 1122222 2222333444444322222222222222212234578888888888898888887777776
Q ss_pred hCCCCCcH-----HhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcC
Q 036461 228 SKGIKPDV-----VIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (369)
Q Consensus 228 ~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (369)
......+. ..|.... -.-..+++++...+..+......+.
T Consensus 285 ~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 285 KLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChh
Confidence 64311111 1222211 1234557777777777665544443
No 418
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.20 E-value=14 Score=18.33 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLIN 27 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~ 27 (369)
|.|+.+|++.+.. .|++.+|.....
T Consensus 4 dRAR~IyeR~v~~--hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLV--HPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 5799999999885 688888876543
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.73 E-value=52 Score=23.58 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=53.7
Q ss_pred hHhCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHH
Q 036461 86 MKDENINPNVV--TYNSLIHGFCYANDWNEAKCLFIEMMDQG-----VQPNVVSFNVIMNELCKNGK-MDEASRLLELMI 157 (369)
Q Consensus 86 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 157 (369)
|.+.+..++.. ..+.++.-....+++.....+++.+.... -..+...|..++.+..+..- --.+..+|..+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 33334444432 34566666666677777777766663211 01245566777776655544 334566666666
Q ss_pred HcCCCccHHHHHHHHHHHHhc
Q 036461 158 QIGVRPNAFVYNTLMDGFCLT 178 (369)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~ 178 (369)
+.+.++++..|..++.++.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 666677777777777766554
No 420
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.66 E-value=74 Score=25.34 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=16.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHc
Q 036461 25 LINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
+++++...|++..|+.-|+.=..
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 45778888888888877765443
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.63 E-value=20 Score=29.15 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCCCC
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDENIN 92 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 92 (369)
|+.-|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445666666666666666666666665554
No 422
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.53 E-value=19 Score=18.42 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLFL 364 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~ 364 (369)
+-.+.-.+..+|++++|+++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4456667788899999998843
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.21 E-value=37 Score=21.72 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=17.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
..|+.+.|.+++..+. .| +..|..++.++...|...
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 233455555555554443
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.09 E-value=44 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666677777777777766665
No 425
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.80 E-value=39 Score=21.80 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
-++.-.+.+ |.|...-..+...+...|++++|++.+-.+.+.+.. ..+...-..++..+...|.
T Consensus 10 al~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~-----~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRD-----YEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT-----CCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----ccccHHHHHHHHHHHHcCC
Confidence 344445554 667788888999999999999999999999987632 1234445555555555554
No 426
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.00 E-value=1.4e+02 Score=28.14 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=87.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
++-+.+.+.+++|+++.+.....-+. ..-...+...+..+.-.|+++.|-...-.|... +..-|..-+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 45677888899999887765543210 003456778888888899999998888888764 555665555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHH------------------HHHcCCCccHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLEL------------------MIQIGVRPNAFV 167 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~ 167 (369)
...++......++ .......+...|..++-.+.. .+...-.++... ..+ . ..+...
T Consensus 434 ~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~-Se~~~L 507 (846)
T KOG2066|consen 434 AELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-N-SESTAL 507 (846)
T ss_pred ccccccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-h-ccchhH
Confidence 5555544332222 111112344556665555554 222211111111 111 1 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
-..|+..|...+++..|...+-.+.+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhccC
Confidence 44578888888999999888776653
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=61.69 E-value=1.4e+02 Score=30.03 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=63.8
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----- 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 89 (369)
++....|..+...+-+.|+.++|+..-.+..-.... .+...+.+...|..+.......++...|...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 566778899999999999999998865543321110 01102333455666666666666777777776665432
Q ss_pred C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 90 N--INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 90 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
| .||...+++.+-..+...++++.|.+.++.+..
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 233344444444444444677777777766654
No 428
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.63 E-value=80 Score=25.07 Aligned_cols=98 Identities=12% Similarity=-0.024 Sum_probs=72.9
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHc------CCCcC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRH------GVAAD-----------TWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
.+...=..-+.+.|++.+|...|.+++.. .-+|. ...+..+.+++...|++-++++.-.++..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34444456677899999999998876431 11222 23344556677788999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 299 LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.. +.|..+|..-..+....=+.++|..-|..+++.
T Consensus 259 ~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 HH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred cC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 75 678888888888888888899999999998876
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.22 E-value=89 Score=25.48 Aligned_cols=144 Identities=13% Similarity=0.001 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhc----CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cC
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRT----GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EG 74 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 74 (369)
|...+......+ +......+...+... .+...|..+|......+ .+.....|...|.. ..
T Consensus 60 a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---------~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 60 ALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---------LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred HHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---------cHHHHHhHHHHHhcCCCccc
Confidence 445555555433 223444444444433 45778999999777655 34455556666665 44
Q ss_pred ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----C
Q 036461 75 FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN-------DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----N 143 (369)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 143 (369)
+..+|...|++..+.|..+...+...+...|.... +...|...|.+....+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 89999999999999876543233444444444431 2336777777777665 33344444444433 2
Q ss_pred CChhHHHHHHHHHHHcCC
Q 036461 144 GKMDEASRLLELMIQIGV 161 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~ 161 (369)
.+..+|...|...-+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 366777777777777663
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.22 E-value=99 Score=25.67 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=66.1
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..+-...|.+.|+.....+.... .+.++.....++....+.|+.+.-..+++..... ++......++.+.+...+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~--~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d 216 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPE--SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPD 216 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TT--STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-
T ss_pred chhHHHHHHHHHHHHhcCCcccc--cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCC
Confidence 55566788888888777431000 0234555666677777777766665666555543 366777788888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh--hHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM--DEASRLL 153 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 153 (369)
.+...++++.+...+..++... ..++..+...+.. +.+.+.+
T Consensus 217 ~~~~~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 217 PELLKRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHH
Confidence 8888888888887542223333 3344444423332 4454444
No 431
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.54 E-value=1.6e+02 Score=27.87 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...+..+|..+.-.|++++|-...-.|... +..-|...+..+...++...... -+.......+...|
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vY 458 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVY 458 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHH
Confidence 457888999999999999999988888753 35566666666666555443322 23322222355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-----------------hcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMM-----------------DQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
..++..+.. .+...-.++..... +.... +......|+..|...+++..|++.+-...+
T Consensus 459 emvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 459 EMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 666666555 22222222111110 00011 222344577788888899998888766543
No 432
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.31 E-value=31 Score=19.57 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
....+.-++.+.|+++.|.+..+.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34556778899999999999999999965
No 433
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.09 E-value=1.1e+02 Score=28.31 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCChhhHHHH
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWN------EAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
.|+.+|...|++-++.++++..... |-+.=...+|..++...+.|.++ .|...+++.. +..|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999998764 33334567888899999988754 4455555544 33466677666
Q ss_pred HHHHH
Q 036461 137 MNELC 141 (369)
Q Consensus 137 ~~~~~ 141 (369)
..+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65443
No 434
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.78 E-value=1.8e+02 Score=28.79 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHH---HhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH----
Q 036461 170 TLMDGFCLTGRVNRAEELFVSM---ESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF---- 242 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 242 (369)
..++-+...+++.+|..+.++- ...=...++..|..=+..+.+.=+--.-+.+|=.-++..-. ....|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv-t~tmY~~~~~~~~ 777 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV-TKTMYKDTYPPSS 777 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc-ccccccccccccc
Q ss_pred --------HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 243 --------IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG--YIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 243 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
......+.....-..+....+. .......+..++.+|++.+ ++++|+.....+.+.+...-..+...++
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~ 856 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLC 856 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhe
Q ss_pred HHHHcCCCHHHHHHHHH----hcccCCcccCHHHHHHHHHHH-------------HhcCchHHHHHHHHHh
Q 036461 313 DGLCKSGRLKIAWELFR----SLPRGVLIADVVTYNIMIHAL-------------CADGKMDKARDLFLDM 366 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~m 366 (369)
..---..-|+.|+.+|+ .|+...-..|+.-|.-.++-+ .+.++|++|++.+.++
T Consensus 857 fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 857 FLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 435
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=58.40 E-value=73 Score=23.58 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChH
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVD 77 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (369)
+.+.+.|+++++.- ..++..+...++.-.|.++++.+.+.+ ...+..|....+..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~------~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAE------PQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhC------CCCCcchHHHHHHHHHHCCCEE
Confidence 44566787766654 456677777788889999999999987 4566667666677777766443
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.48 E-value=2.1e+02 Score=28.67 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGV---RPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
|..+++.+-+.+..+.+.++-..+++.-. +.-..+++.+.+-....|.+-+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 44555555556666666665555544311 111233444555555556655555544
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.08 E-value=15 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=19.5
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
.|.-..|..+|..|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 45556677777777777777665 4555543
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.01 E-value=70 Score=22.94 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC-hHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.++++.-....+++.-.+.+++.+....+..-. -..+...|..++.+..+... --.+..+|.-+++.+.+.++..|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~-~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNII-GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh-hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 455555555566666666666655432210000 01234456666666544443 3344555555555555566666666
Q ss_pred HHHHHHhc
Q 036461 101 LIHGFCYA 108 (369)
Q Consensus 101 l~~~~~~~ 108 (369)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66555444
No 439
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.96 E-value=93 Score=24.31 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc---CHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTWAY--RTFIDGLCKNGYIVEAVELFRTLRILKYELDI 305 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 305 (369)
+.+...-++.|+.-|.-...+.+|...|..- .++.| +...+ +.-+......|+.++|......+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4556666777777777777777766666442 33333 33333 34566778899999999888887654444454
Q ss_pred HHHHHHHH----HHHcCCCHHHHHHHHHhcccCCcccCHHHHHHH
Q 036461 306 RAYNCLID----GLCKSGRLKIAWELFRSLPRGVLIADVVTYNIM 346 (369)
Q Consensus 306 ~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 346 (369)
..+..|.. =..+.|..++|+++.+.=......-+...+..+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~el 144 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEEL 144 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHH
Confidence 44443332 245778888888887765443222233444333
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.82 E-value=32 Score=18.95 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhcC
Q 036461 113 EAKCLFIEMMDQG 125 (369)
Q Consensus 113 ~a~~~~~~~~~~~ 125 (369)
++..++++|.+.|
T Consensus 20 ~~~~~l~~l~~~g 32 (48)
T PF11848_consen 20 EVKPLLDRLQQAG 32 (48)
T ss_pred hHHHHHHHHHHcC
Confidence 3333333333333
No 441
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.47 E-value=41 Score=20.11 Aligned_cols=51 Identities=2% Similarity=0.030 Sum_probs=30.2
Q ss_pred cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 036461 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 107 (369)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (369)
+.|....++.++...++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345556666777777766667777777777766654 255555555544443
No 442
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.50 E-value=1.9e+02 Score=27.37 Aligned_cols=120 Identities=15% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADT--WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
++..-|+.+.|..+.+++.... .|-. .-.-.+..+|+-.|+.....+++.-...- ...|+.-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566667777777766532 1111 11223455666667766666666554432 234444444444455556666
Q ss_pred HHHHHHHHhcccCCcccCHH--HHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 322 KIAWELFRSLPRGVLIADVV--TYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+....+..-+.+. ..|... +--.|.-+|.-.|+ .+|+.+++-|.
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 6666666655543 222222 22333444555554 56666666654
No 443
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.84 E-value=1.1e+02 Score=24.31 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=16.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
++..+-+.++++++...++++...+...+..-.+.+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsv 44 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSV 44 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHH
Confidence 34444455555555555555555444444443333333
No 444
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=54.59 E-value=72 Score=26.74 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCCCcCHh----HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVF----TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC 71 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (369)
+.+.+++.+++. -|+.. -|.++++.....|.++..+.+|+.+...+ ..|-...-..++..+-
T Consensus 121 ei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag------AqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG------AQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHH
Confidence 445566666654 34443 68888999999999999999999999988 5776666666666654
No 445
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.81 E-value=1.4e+02 Score=25.49 Aligned_cols=101 Identities=12% Similarity=-0.028 Sum_probs=53.3
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CC------------------CchHHHHH---HHHHHHhhc
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM-------GC------------------KHNVFSYS---ILINGYCKN 213 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------------------~~~~~~~~---~l~~~~~~~ 213 (369)
+-...++..+...+...|+...|.++++++.-. .+ ..|...|. ..+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 445566666777778888877777777665311 11 01122222 223445556
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-hcccHHHHHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF-EIHQVERAFKLFDEMQ 262 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 262 (369)
|.+..|+++.+-+...++.-|+.....+|..|+ +.++++-.+++.+...
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 666666666666666544434444444444443 4455555555555443
No 446
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.64 E-value=2e+02 Score=27.08 Aligned_cols=121 Identities=11% Similarity=-0.083 Sum_probs=62.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCCCC--
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL------------KYELD-- 304 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~-- 304 (369)
..-+......++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+... |.+.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~ 394 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLK 394 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCC
Confidence 333444446667777666666654321 123333444556656677777777777765321 11100
Q ss_pred ------HH------HHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 305 ------IR------AYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 305 ------~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
.. ....-+..+...|+...|...+..+... .+......+.....+.|.++.++...
T Consensus 395 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 395 IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00 0011233455567777777777666653 23344444555555666666665443
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=52.85 E-value=2.2e+02 Score=27.31 Aligned_cols=110 Identities=11% Similarity=0.012 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGL-CKNGYIVEAVELFRTLRILKYELDIR-AYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
+..|...|.........+............ .-.++.+.++.+|+.+...+ .-+.. .|...+..-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 344444444443322222333333333333 34678999999999888665 23333 5666666666778888888888
Q ss_pred HhcccCCcccCH--HHHHHHHHHHHhcCchHHHHH
Q 036461 329 RSLPRGVLIADV--VTYNIMIHALCADGKMDKARD 361 (369)
Q Consensus 329 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 361 (369)
+.....-..|+. .++..+.+.-...|.++....
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 887765444532 233333344444566655443
No 448
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.44 E-value=1.1e+02 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
..-.+.....+.|+.++|.+.|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33345556667777777777777776553
No 449
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.04 E-value=2.7e+02 Score=28.25 Aligned_cols=100 Identities=12% Similarity=0.007 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHH-------HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 036461 129 NVVSFNVIMNELCKNGKMDEASRLLELMI-------QIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM------- 194 (369)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 194 (369)
....|..+...+.+.++.++|+..-.... ....+-+...|..+...+...+....|...+.+....
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 34455556666666666666655433221 1111222333444444444444555555555444321
Q ss_pred CCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 195 GCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
..|+...+++.+-..+...++.+.|.++++.+..
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1123333333333333444556666666655554
No 450
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.09 E-value=71 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=4.8
Q ss_pred HhCCChhHHHHH
Q 036461 141 CKNGKMDEASRL 152 (369)
Q Consensus 141 ~~~~~~~~a~~~ 152 (369)
...|++++|..+
T Consensus 50 mNrG~Yq~Al~l 61 (115)
T TIGR02508 50 MNRGDYQSALQL 61 (115)
T ss_pred HccchHHHHHHh
Confidence 333444444433
No 451
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=2.3e+02 Score=26.81 Aligned_cols=186 Identities=10% Similarity=0.037 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHcCCCCCCcccccchhhH-HHHHHHHHhcCChHHHHHHHHHhH-hCCCCCCHHhHHHHHHHHHhcCCHH
Q 036461 35 TIVALNLFEEMANGNGEFGVVCKPNTVTY-TTIIDGLCKEGFVDKAKELFLKMK-DENINPNVVTYNSLIHGFCYANDWN 112 (369)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (369)
+.+.+...+.+.+.. ..|+..+- ..+-..|...|++++|+++--... ...+.++...+.+++.-|... -.+
T Consensus 39 Isd~l~~IE~lyed~------~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~ 111 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDE------TFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIE 111 (929)
T ss_pred hhhhHHHHHHHhccC------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHH
Confidence 334555666666555 23333332 334467888899999988765543 334566666666655444322 112
Q ss_pred HHHHHHHHHH-hcCCCCCh-hhHHHHHHHHHhCCChhHHHHH---------HHH-HHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 113 EAKCLFIEMM-DQGVQPNV-VSFNVIMNELCKNGKMDEASRL---------LEL-MIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 113 ~a~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~---------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
.+.+.+..-. ..++.+.. .....++..|...+++..++.+ +++ +.+.. .+....+.++..+....+
T Consensus 112 ~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~ 189 (929)
T KOG2062|consen 112 TASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVN 189 (929)
T ss_pred HHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHh
Confidence 2222222111 11111111 1233444444444454444333 222 11211 122233334444433322
Q ss_pred -hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 181 -VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 181 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
.+--.++++.+.+.-.+-...-|..+.+++....+.+.+.++++++.+.
T Consensus 190 ~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 190 NREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred hHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 2323333333332211222223566778888899999999999999884
No 452
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.59 E-value=1.4e+02 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 036461 268 ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL 303 (369)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 303 (369)
|.+.....++..|. .+++++|.+++.++-+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444333 344555555555555555433
No 453
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.52 E-value=1.8e+02 Score=25.20 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHh---HhCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhCCC
Q 036461 75 FVDKAKELFLKM---KDENIN-----PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV-VSFNVIMNELCKNGK 145 (369)
Q Consensus 75 ~~~~a~~~~~~~---~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 145 (369)
..++..+++++. ..+|+. .+..+...++. ...|+...|+..++.+.... +++. .+
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-~~~~~~~------------- 227 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR--LSNGDARRALNLLELAALSA-EPDEVLI------------- 227 (436)
T ss_pred CHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH--hcCchHHHHHHHHHHHHHhc-CCCcccC-------------
Confidence 344555555552 223433 23334443433 23578788877777765542 2222 11
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC-----hH
Q 036461 146 MDEASRLLELMIQIGVRPNAFVYNTLMDGFCL---TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE-----IE 217 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~ 217 (369)
.+...+++.+-.... ..+-..+..+++++.+ -.+.+.|+-++-+|...|..|....-..++.++-.-|. ..
T Consensus 228 ~~~l~~~l~~~~~~~-Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~ 306 (436)
T COG2256 228 LELLEEILQRRSARF-DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQ 306 (436)
T ss_pred HHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHH
Confidence 112222222221111 2232233334555543 35677777777777777755555555555545444442 22
Q ss_pred HHHHHHHHHHhCCCC
Q 036461 218 GALSLYSEMLSKGIK 232 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~ 232 (369)
-|...++....-|.+
T Consensus 307 ~a~aa~da~~~lG~P 321 (436)
T COG2256 307 VAVAALDAVERLGSP 321 (436)
T ss_pred HHHHHHHHHHHhCCc
Confidence 344445555555544
No 454
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=47.62 E-value=1.2e+02 Score=24.10 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
++|..+++.-... ..++.+...+.-++...|+...+..+++.+..
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3444444443221 24555555555566666666666666666643
No 455
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.16 E-value=2.1e+02 Score=25.58 Aligned_cols=242 Identities=13% Similarity=0.125 Sum_probs=131.2
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC------CHHHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhCCChhHH
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCYAN------DWNEAKCLFIEMMDQG-VQP-NVVSFNVIMNELCKNGKMDEA 149 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 149 (369)
...++|++..+. -|+...|+..|..|...- .+.....+++.....+ ..+ ....|..+...+...+...+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~- 376 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE- 376 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH-
Confidence 444666666653 446666766666655432 3444455555554432 122 23344444444444443322
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHH-HHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC-hHH-HH-HHHH
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNR-AEELFVSMESMGCKHNVFSYSILINGYCKNKE-IEG-AL-SLYS 224 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a~-~~~~ 224 (369)
+-..+...+...+...|..-+....+.. +++- -.+.+..+...-..+....|+... .|+ .+. .. .++.
T Consensus 377 --~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 377 --VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred --HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 2222222233345555555444444221 2221 122223333322222333333332 222 111 11 2222
Q ss_pred HHHhCCCCCcHHhH-HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH-cC
Q 036461 225 EMLSKGIKPDVVIY-NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC--KNGYIVEAVELFRTLRI-LK 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-~~ 300 (369)
..... ..|+..++ +.++..+...+-..+|...+..+... ++|+...+..+++.-. .+-+...+..+|+.+.. .|
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 22332 33454443 56777788889999999999999887 5678888888877432 22338888899998874 34
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++..|...+..-...|+.+.+-.++.++.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 7888888888777788998888777766554
No 456
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.77 E-value=1.9e+02 Score=24.80 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=84.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH-------cCC---------------
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQ-------IGV--------------- 161 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~--------------- 161 (369)
.+...++++.-..++.+ .+-...++..+...+...|+...|.+++++++- ...
T Consensus 19 ~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 19 AAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 33445566665555422 245677888888999999999998888887641 111
Q ss_pred ---CccHHHHHH---HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 036461 162 ---RPNAFVYNT---LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC-KNKEIEGALSLYSEMLS 228 (369)
Q Consensus 162 ---~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 228 (369)
.-|...|.+ .+..+.+.|-+..|.++.+-+...+...|+.....+|..|+ +.++++--+++.+....
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 113334443 35678899999999999999999875547777777777764 67888888888887665
No 457
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.03 E-value=17 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=23.4
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
..|.-.+|-.+|++|+++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 356777899999999999988865 5566554
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.83 E-value=2.1e+02 Score=25.07 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=34.9
Q ss_pred cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHhCCCCCcH
Q 036461 178 TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE-----IEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 235 (369)
.++.+.|+.++..+...|..|....-..+..++-..|. ..-|...++....-|.+-..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~ 305 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGR 305 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 47888888888888888766665554444444444332 23445555555556654333
No 459
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.80 E-value=1.8e+02 Score=24.43 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCK------NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIA 324 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 324 (369)
++++..++++...++. |.+..+...+.++.. .-+|.....+|+.+......| +.+.|..+ +..+..-++.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhH
Confidence 4566666666666553 566666555554432 235667777777766654222 22333222 23333445556
Q ss_pred HHHHHhcccCC-cccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 325 WELFRSLPRGV-LIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
+...+-+...+ +..-...+..-...+.+.|+.++|...|++.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 66665555432 1111122333445566777777777776654
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.64 E-value=1.5e+02 Score=23.32 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=9.9
Q ss_pred HHHHHHhcccHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDE 260 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~ 260 (369)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.44 E-value=68 Score=21.68 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 036461 114 AKCLFIEMMD 123 (369)
Q Consensus 114 a~~~~~~~~~ 123 (369)
|.++++.+.+
T Consensus 19 a~ei~~~l~~ 28 (116)
T cd07153 19 AEEIYERLRK 28 (116)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 462
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.39 E-value=1.5e+02 Score=23.26 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhH--HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHH
Q 036461 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIY--NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW 271 (369)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 271 (369)
.+...-++.|+--|.-...+.+|.+.|..-. ++.| |..++ ..-++.....|+.+.|+.....+-..-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 4555566676666666666666666665433 3333 33333 345677789999999999988765432333432
Q ss_pred HHHHH----HHHHHhCCCHHHHHHHHHHHH
Q 036461 272 AYRTF----IDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 272 ~~~~l----~~~~~~~g~~~~a~~~~~~~~ 297 (369)
.+-.+ +--..+.|..++|+++.+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222 223467888888888876543
No 463
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=45.36 E-value=71 Score=19.59 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.7
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE 73 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (369)
.=+.+.|..++..+.... +.++..||++...+.+.
T Consensus 10 mlDtEmA~~mL~DLr~de-------kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRDDE-------KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHhcchh-------hcChHHHHHHHHHHHHc
Confidence 336778888888887765 67789999988877654
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.11 E-value=2.5e+02 Score=25.72 Aligned_cols=172 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH----------------
Q 036461 175 FCLTGRVNRAEELFVSMESM-----------GCKHNVFSYSILINGYCKNKEIEGALSLYSEML---------------- 227 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------- 227 (369)
+...+.++++...|.-.... ..|-.+.+...+..++..+|+.+.+..++++.+
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ----hCCCCCcHHhHHHH---HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC----HHHHHHHHHHH
Q 036461 228 ----SKGIKPDVVIYNTL---FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY----IVEAVELFRTL 296 (369)
Q Consensus 228 ----~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~ 296 (369)
.-...-+...|.+| ++.+.+.|-+..|.++.+-+......-|+.....++..|+-..+ +.+-...++.+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHhcccCCcccCHHHHHHHHHHH
Q 036461 297 RILKYELDIRAYNCLIDGLCKSGR---LKIAWELFRSLPRGVLIADVVTYNIMIHAL 350 (369)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (369)
.....-||-..-.+++..|.+... -+.|...+.++... -+...+-|+..+
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~----~P~vl~eLld~~ 460 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH----HPLVLSELLDEL 460 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh----CcHHHHHHHHhc
No 465
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.74 E-value=65 Score=19.00 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH-----HhcCChHHHHHHH
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL-----CKEGFVDKAKELF 83 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 83 (369)
.+.+.|++-+|-++++.+-... ..+....+..+|... .+.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~------~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAA------PGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-------CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHC------CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4567899999999999998755 234556666666544 3467777776654
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.61 E-value=1.1e+02 Score=25.42 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=41.5
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHH-HHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTT-IIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+.|+..|...+.-..+.|.+.+...+|.++.+.. |.|+..|-. -..-+...++++.+..+|....+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-------P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-------PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 4466667666666666667777777777777665 455555533 223344456777777777766654
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.64 E-value=1.7e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
++.....+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566667777778888777777655
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.62 E-value=97 Score=20.91 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=25.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 036461 136 IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (369)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (369)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3344444455556666666666665555555555555555555543
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.08 E-value=1.4e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=18.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
..++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444455555555555544444444444444444444
No 470
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=43.08 E-value=3.1e+02 Score=26.35 Aligned_cols=200 Identities=11% Similarity=0.013 Sum_probs=109.5
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh---cCChHHHHHHHHHhHhCCCCC
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK---EGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~ 93 (369)
-+...+..||..+.+.|+.++...--..|.... |.++..|...+..... .++...+..+|++....-.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~-- 181 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN-- 181 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--
Confidence 355678889999999999988777777777654 5567778777765443 4677788888888776533
Q ss_pred CHHhHHHHHHHH-------HhcCCHHHHHHHHHHHHhc-CCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 94 NVVTYNSLIHGF-------CYANDWNEAKCLFIEMMDQ-GVQPN-----VVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 94 ~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
++..|.-.+..+ ...++++....+|.+.+.. |...+ ...|.-+=..|...-..++...++..-...+
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 333333333332 2346677778888877653 22111 1122222233444444456666666555543
Q ss_pred CCccHHHHHHHHHHH-------HhcCChHHHHHH-------HHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 161 VRPNAFVYNTLMDGF-------CLTGRVNRAEEL-------FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~-------~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
. |..+-+.-+.-. ....+++.+.+- +.+..+.. ++-...|..++..+...|++-.....++++
T Consensus 262 ~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 262 L--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred c--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2 222211111111 112233333333 22222221 334455677777777788776666666665
Q ss_pred Hh
Q 036461 227 LS 228 (369)
Q Consensus 227 ~~ 228 (369)
..
T Consensus 339 ~~ 340 (881)
T KOG0128|consen 339 VA 340 (881)
T ss_pred HH
Confidence 54
No 471
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=42.60 E-value=88 Score=19.87 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
+.|++..|+.++......+...-|..++.+...
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 467777777777777777777777666666553
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.16 E-value=59 Score=22.22 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhc
Q 036461 112 NEAKCLFIEMMDQ 124 (369)
Q Consensus 112 ~~a~~~~~~~~~~ 124 (369)
-.|.++++.+.+.
T Consensus 24 ~ta~ei~~~l~~~ 36 (120)
T PF01475_consen 24 LTAEEIYDKLRKK 36 (120)
T ss_dssp EEHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhc
Confidence 3333333333333
No 473
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.03 E-value=1.3e+02 Score=21.61 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 146 MDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4444444444444443333333333344444444
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.94 E-value=1.2e+02 Score=21.14 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 83 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (369)
.+....+....---|..-|..+=-.|++.-+ .+.++|..|...+. ...-...|......+...|++++|.++|
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~I-----G~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGI-----GTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTT-----STTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCc-----cHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHhH
Q 036461 84 LKMK 87 (369)
Q Consensus 84 ~~~~ 87 (369)
+..+
T Consensus 123 ~~Gi 126 (126)
T PF08311_consen 123 QLGI 126 (126)
T ss_dssp HHHH
T ss_pred HhhC
No 475
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.19 E-value=1.3e+02 Score=21.53 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 110 DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555554443334444333344444443
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.12 E-value=2.2e+02 Score=24.01 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH------hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHH
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHGFC------YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA 149 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (369)
++++..++++....+. |.+......|.++- ..-+|.....+|+-+......| ..+.|.-+ +.....-...+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhH
Confidence 5677788888777754 56666665554432 2346888888888877764333 33444433 33344445666
Q ss_pred HHHHHHHHHcCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 150 SRLLELMIQIGVRPNAF-VYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
+...+.+...+--.... .+..-...+.+.|+.++|...|++.....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 77776666552111222 22334566778888888888888887664
No 477
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.69 E-value=2.2e+02 Score=23.95 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=65.7
Q ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHHcCC-Cc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 236 VIYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AA--DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
..|.-=..-|.+..++..|...|..-++... .| +...|+.-..+-...|++..|+.-....+... +.....|-.=.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhh
Confidence 4555666777888888899988887665422 22 34455555555566788888888887777664 34455555556
Q ss_pred HHHHcCCCHHHHHHHHHhccc
Q 036461 313 DGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.++....+++.|....++...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 677777888888877777654
No 478
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.54 E-value=2.3e+02 Score=24.14 Aligned_cols=19 Identities=21% Similarity=-0.005 Sum_probs=12.9
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036461 175 FCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~ 193 (369)
|...++++.|..++.....
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 3455677788777777764
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.42 E-value=1.1e+02 Score=20.44 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
..++.-|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666677777777777665
No 480
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.07 E-value=98 Score=19.69 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKA 79 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (369)
.+++.+.+.|+ -+... .-.......+.++|..+++.+..+| +.+|..+..++...|...-|
T Consensus 20 ~v~~~L~~~~V-lt~~~---~e~I~~~~tr~~q~~~LLd~L~~RG----------~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGV-FTPDM---IEEIQAAGSRRDQARQLLIDLETRG----------KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCC-CCHHH---HHHHHcCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCchHHH
Confidence 45666666653 22222 2223334566788888988888876 56788888887777755444
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.99 E-value=2.2e+02 Score=23.65 Aligned_cols=74 Identities=11% Similarity=0.287 Sum_probs=35.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHH-HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF-DEMQRHGVAADTWAYRTFIDGLCKNGYIVEAV 290 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 290 (369)
+...+++.....++-.+..--|+......+-.+......|.+-.++. +..++ ....|..++.+++..|+.+-.+
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 33445555555554444433455543333323322333333222222 12222 2346778888888888776544
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.94 E-value=1.7e+02 Score=22.35 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=91.3
Q ss_pred cCCCcCHhHHHHHHHHHHhcCC----hhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHH
Q 036461 13 FGCEPNVFTYNTLINGLCRTGH----TIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFL 84 (369)
Q Consensus 13 ~g~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (369)
.|.-++++.++.++..+.+..- .+.+..+=.+...+. +.++ ......=+..|-..||+.+.-.+|-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~------~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~ 75 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQ------FKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYI 75 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHHHHhhhccHHHHhhHHh
Confidence 4777899999999888776543 333444434444433 2222 2223333455666666666666555
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN 164 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (369)
.+... .. +..-+..+- +| -|..+.++..+ +| ...|......-++.-..+++-+.+-
T Consensus 76 nv~~g-ce-~~~dlq~~~-~~-------va~~Ltkd~Kd---k~-~vPFceFAetV~k~~q~~e~dK~~L---------- 131 (233)
T PF14669_consen 76 NVKMG-CE-KFADLQRFC-AC-------VAEALTKDSKD---KP-GVPFCEFAETVCKDPQNDEVDKTLL---------- 131 (233)
T ss_pred hHHhh-cC-CHHHHHHHH-HH-------HHHHHHhcccc---cC-CCCHHHHHHHHhcCCccchhhhhhh----------
Confidence 54331 11 111111100 00 12233333322 22 2234555555544434343322221
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHhhcCChHHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--------------HNVFSYSILINGYCKNKEIEGALSLYS 224 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (369)
-.+-..++..|.+.-++.+..++++.+....+. +.-...|.....+.+.|..+.|+.+++
T Consensus 132 GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 132 GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 122234566778888888888888888654321 222334555666667777777776665
No 483
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.50 E-value=73 Score=25.00 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=40.1
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
....++.+.+.+++.+..+.- +.....|-.+...-.+.|+++.|.+.|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 446677888888888877752 3345567777777778888888888888888765
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.26 E-value=94 Score=21.22 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=22.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 136 IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 444444444455666666666665555555544444555554443
No 485
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=38.96 E-value=3e+02 Score=25.02 Aligned_cols=241 Identities=15% Similarity=0.005 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--ccHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR--PNAFVYNTLMD 173 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 173 (369)
..+...+..+...+.+.+++.+.++.... ...|..+...+...+....+...+-+-.+.+-+ .+......+..
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~e 378 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAE 378 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHH
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
.+...|+...|.++-...-.. +|+...|..|=.+-...|-...-....-.-.+.+..| +..+..++-..|-...
T Consensus 379 l~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~~~~~~p----~~~~~~~l~~~g~~~p 452 (587)
T COG4715 379 LKEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREEREAALAYLEVGESP----FAIWPGALPLTGLLWP 452 (587)
T ss_pred HHHhhcchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHHHHHHHHHhccCc----hhhhhhhhhhcccCCc
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCHHHHHHHHHh
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID---GLCKSGRLKIAWELFRS 330 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~ 330 (369)
+-. -..-+.....++..+.......++.+-+.+....+...-...+..++. .-.....++-|..++.+
T Consensus 453 ~d~---------~~li~~~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~~~i~~n~i~~A~~~~~peia~~~~~r 523 (587)
T COG4715 453 ADR---------RTLITRLLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYALHIVENKIVNAVPEKYPEIALLIWKR 523 (587)
T ss_pred chh---------hhHhhhhHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhHHhHHHHHHHhhhhccCchHHHHHHHH
Q ss_pred cccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 331 LPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..+. +-.-.+..-|.+|...++++.+
T Consensus 524 ~Ae~------------li~~t~~~~Y~EA~~~Lqki~~ 549 (587)
T COG4715 524 VAER------------LISETKVRAYAEAATHLQKIKE 549 (587)
T ss_pred HHHH------------HHhhhhhhHHHHHHHHHHHHHH
No 486
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.86 E-value=2.7e+02 Score=24.32 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036461 64 TTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
..|++...-.|+.+...+.++.+++. |..|....-.-+.-+|.-.+++.+|.+.|-..+
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566665555555555442 222222211234445555666666666665543
No 487
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=38.80 E-value=1.3e+02 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=8.7
Q ss_pred HHHhcCchHHHHHHHHHh
Q 036461 349 ALCADGKMDKARDLFLDM 366 (369)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m 366 (369)
.+...|++-+|++.++.+
T Consensus 100 ~~v~~g~~y~ALk~~R~L 117 (126)
T PF07378_consen 100 ELVEAGRYYKALKALRKL 117 (126)
T ss_pred HHHHCCcHHHHHHHHHHh
Confidence 344445555555544443
No 488
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=2.2e+02 Score=23.36 Aligned_cols=200 Identities=13% Similarity=0.178 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch-------hhHHHHHHHHHhcCChHHHHHHHHHhHh----CCCC
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT-------VTYTTIIDGLCKEGFVDKAKELFLKMKD----ENIN 92 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 92 (369)
-+.+...+.+++++|+..+.++...| +..+. .+...+...|...|+...--+......+ ..-+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 45667788899999999999999887 44443 4566788889999987766655544322 1112
Q ss_pred CCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChh-----hHHHHHHHHHhCCChhHHHHHHHHH----HHcCCC
Q 036461 93 PNVVTYNSLIHGFCYA-NDWNEAKCLFIEMMDQGVQPNVV-----SFNVIMNELCKNGKMDEASRLLELM----IQIGVR 162 (369)
Q Consensus 93 ~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~ 162 (369)
.......+|+..+... ..++..+.+....++...+-... .-..++..+.+.|.+.+|+.+...+ .+..-+
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 2344455566555433 35666666666655432111111 1134677888999999998876544 344445
Q ss_pred ccHHHHHHH-HHHHHhcCChHHHHHHHHHHHh----cCCCchHHHHHHHHHHH--hhcCChHHHHHHHHHHHhC
Q 036461 163 PNAFVYNTL-MDGFCLTGRVNRAEELFVSMES----MGCKHNVFSYSILINGY--CKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 163 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 229 (369)
++..+...+ -..|....+..++..-+..... .-+||-...-.-++++. +...++..|..+|-+..+.
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 554433322 2455566666666555554432 22455544444444443 3456788888888777663
No 489
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.61 E-value=10 Score=34.14 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFID--GLCKNGYIVEAVELFRTLRILKYELDI--RAYNCLIDGLCK 317 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 317 (369)
+.++...|+++.|..++..+......+.......++. .....|+++.|...+........++.. ..+.....++..
T Consensus 31 a~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~ 110 (536)
T PF04348_consen 31 ARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQ 110 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4556666777777777776664434444433333333 334466677777666543322222221 222233344555
Q ss_pred CCCHHHHHHH
Q 036461 318 SGRLKIAWEL 327 (369)
Q Consensus 318 ~g~~~~a~~~ 327 (369)
.|++-+|.+.
T Consensus 111 ~~~~l~Aa~~ 120 (536)
T PF04348_consen 111 QGDPLAAARE 120 (536)
T ss_dssp ----------
T ss_pred cCCHHHHHHH
Confidence 5555444443
No 490
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.06 E-value=2.3e+02 Score=23.45 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+......++.+++...+.+...++++.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444445555545555554555554444
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.76 E-value=2.4e+02 Score=23.46 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (369)
.++++.+.+.++.|....+..+...+.+.=.+..++.+|+.+.. |+.-+..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 46777888888888888888888778888888888888888875 3333556666554
No 492
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.59 E-value=2.2e+02 Score=22.99 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
.+.+++.+.+.|....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45666666676766777776666553
No 493
>PRK09857 putative transposase; Provisional
Probab=37.53 E-value=2.4e+02 Score=23.33 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=21.5
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
...++.++...+++.+.+. .+.......++.+-+.+.|.-+++..+.++|...|
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444333 22222233344444444444344444444444444
No 494
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.95 E-value=3.3e+02 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
..++.-|.+.+++++|..++..|.=... ..--.+.+.++..+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3466678888888888888877742210 111223344445555554444445555555443
No 495
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=36.88 E-value=2.2e+02 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=14.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMM 122 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (369)
++.+.-.+..++...|+...+..+++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 44444444444445555555555555554
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.58 E-value=1.1e+02 Score=24.03 Aligned_cols=106 Identities=7% Similarity=-0.083 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
+.+..+..|-.-...++..++-.+...|+++.|+++.+.++++| .+.+..|..=.-.++- ++...........|-
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~-l~~Pd~f~R~~~t~va----eev~~~A~~~~~ag~ 144 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHG-LTMPDQFRRTLANFVA----EEVANAALKAASAGE 144 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcC-CCCCccccCCchHHHH----HHHHHHHHHHHHcCC
Q ss_pred ccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 337 IADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+.++.....+...-....-+++...=|-++.
T Consensus 145 ~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~ 175 (230)
T PHA02537 145 SVEPYFLRVFLDLTTEWDMPDEVRAKLYKAA 175 (230)
T ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHH
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.17 E-value=2.5e+02 Score=23.16 Aligned_cols=120 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK 145 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (369)
++....+.++.....+.+..+. ....-...+......|++..|+.++.+..+.--.........=+..-...-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHH
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 146 MDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
..--..+=..+.+.-..-|+..|..+..+|.-.|+...+.+-+...
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.10 E-value=2.2e+02 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHHHH
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAEELFVSME 192 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 192 (369)
.++..+-..++++++...+..+...+...+..--+.+..+|-. .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4556667777888888888888777666665555555444422 244444555554443
No 499
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.83 E-value=1e+02 Score=24.25 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+.++.+.|.+++.+....- +.....|..+...--+.|+++.|.+.|++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445667777777777777653 445667777777777777777777777777664
No 500
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.13 E-value=81 Score=20.65 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.6
Q ss_pred CChhHHHHHHHHHHcCC
Q 036461 33 GHTIVALNLFEEMANGN 49 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~ 49 (369)
.++..|..+|..+.+.+
T Consensus 38 e~i~s~~~Lf~~Lee~g 54 (97)
T cd08790 38 GLIRSGRDFLLALERQG 54 (97)
T ss_pred cCcCcHHHHHHHHHHcC
Confidence 44444555555555544
Done!