Query 036461
Match_columns 369
No_of_seqs 694 out of 1574
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 22:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-35 3.9E-40 265.4 37.8 232 132-368 341-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.7E-36 3E-40 266.1 34.1 328 16-350 197-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-32 1.1E-36 230.0 43.3 352 1-368 16-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.9E-30 2E-34 216.3 41.7 338 2-355 51-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-32 3.8E-37 236.7 24.1 205 3-213 9-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.6E-32 1.6E-36 232.9 25.2 202 81-282 11-222 (501)
7 2y4t_A DNAJ homolog subfamily 100.0 1.5E-27 5.2E-32 205.6 37.8 327 5-348 13-371 (450)
8 2gw1_A Mitochondrial precursor 100.0 8.5E-28 2.9E-32 210.6 34.4 352 1-368 23-477 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 5.6E-26 1.9E-30 195.8 36.3 317 37-368 10-357 (450)
10 3fp2_A TPR repeat-containing p 100.0 4.2E-25 1.4E-29 194.6 36.8 353 1-368 42-490 (537)
11 2gw1_A Mitochondrial precursor 100.0 2.6E-25 9E-30 194.8 33.8 337 18-368 5-443 (514)
12 3ieg_A DNAJ homolog subfamily 100.0 3.4E-24 1.2E-28 178.9 38.6 321 18-352 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 172.2 37.8 303 59-368 2-334 (359)
14 3hym_B Cell division cycle pro 99.9 8.2E-23 2.8E-27 168.5 33.8 295 56-357 18-322 (330)
15 3fp2_A TPR repeat-containing p 99.9 7.2E-23 2.5E-27 180.4 34.8 336 18-368 24-456 (537)
16 3hym_B Cell division cycle pro 99.9 5.5E-23 1.9E-27 169.6 32.0 295 15-322 18-322 (330)
17 2xm6_A Protein corresponding t 99.9 7E-20 2.4E-24 159.2 45.8 331 2-368 61-431 (490)
18 1fch_A Peroxisomal targeting s 99.9 1.5E-22 5.1E-27 169.7 26.1 288 73-365 38-355 (368)
19 1fch_A Peroxisomal targeting s 99.9 5.3E-22 1.8E-26 166.3 26.7 294 29-332 35-357 (368)
20 2xm6_A Protein corresponding t 99.9 5.6E-19 1.9E-23 153.5 45.7 329 4-368 27-395 (490)
21 4eqf_A PEX5-related protein; a 99.9 2.8E-22 9.7E-27 167.8 23.1 266 59-330 64-352 (365)
22 4eqf_A PEX5-related protein; a 99.9 3.3E-22 1.1E-26 167.4 22.4 267 94-365 64-352 (365)
23 3cv0_A Peroxisome targeting si 99.9 7.1E-21 2.4E-25 156.7 25.5 279 59-365 20-311 (327)
24 3cv0_A Peroxisome targeting si 99.9 1.5E-20 5.1E-25 154.8 26.7 282 18-333 20-314 (327)
25 2ooe_A Cleavage stimulation fa 99.9 2.5E-18 8.6E-23 150.9 40.4 354 2-368 30-491 (530)
26 4g1t_A Interferon-induced prot 99.9 3.6E-19 1.2E-23 154.2 32.7 347 17-368 49-458 (472)
27 2ooe_A Cleavage stimulation fa 99.9 2.1E-18 7.2E-23 151.4 36.5 346 7-368 2-453 (530)
28 3mkr_A Coatomer subunit epsilo 99.9 4.2E-19 1.4E-23 142.9 29.4 253 26-300 6-265 (291)
29 3mkr_A Coatomer subunit epsilo 99.9 1.8E-19 6.1E-24 145.1 26.9 275 67-362 6-287 (291)
30 1b89_A Protein (clathrin heavy 99.8 2.3E-20 7.9E-25 153.6 15.6 279 1-329 20-306 (449)
31 1b89_A Protein (clathrin heavy 99.8 2.9E-20 9.8E-25 153.0 14.5 283 31-363 15-305 (449)
32 2pl2_A Hypothetical conserved 99.8 1.7E-18 5.8E-23 133.4 21.9 200 16-227 2-212 (217)
33 4g1t_A Interferon-induced prot 99.8 1.2E-17 4.2E-22 144.6 28.6 330 1-335 68-460 (472)
34 2pl2_A Hypothetical conserved 99.8 5.3E-18 1.8E-22 130.6 22.2 113 214-330 98-210 (217)
35 3uq3_A Heat shock protein STI1 99.8 1.5E-17 5E-22 132.0 24.8 225 60-298 5-235 (258)
36 3uq3_A Heat shock protein STI1 99.8 1.8E-17 6E-22 131.5 24.8 227 94-334 4-236 (258)
37 3u4t_A TPR repeat-containing p 99.8 4.8E-17 1.7E-21 130.1 25.3 247 60-311 3-261 (272)
38 3u4t_A TPR repeat-containing p 99.8 4.2E-17 1.4E-21 130.5 24.7 251 18-279 2-264 (272)
39 2h6f_A Protein farnesyltransfe 99.8 1.1E-16 3.7E-21 133.1 27.2 233 19-264 97-348 (382)
40 1ouv_A Conserved hypothetical 99.8 1.6E-15 5.4E-20 121.3 31.6 225 58-300 4-252 (273)
41 2h6f_A Protein farnesyltransfe 99.8 1.4E-16 4.9E-21 132.3 26.2 248 60-315 97-363 (382)
42 3e4b_A ALGK; tetratricopeptide 99.8 1.1E-16 3.6E-21 137.2 25.3 330 2-366 21-384 (452)
43 1ouv_A Conserved hypothetical 99.8 1.9E-15 6.5E-20 120.9 30.2 226 16-265 3-252 (273)
44 2ho1_A Type 4 fimbrial biogene 99.8 5.5E-16 1.9E-20 122.5 26.6 201 60-264 37-238 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.2E-17 1.4E-21 130.7 19.7 247 72-363 17-269 (275)
46 2q7f_A YRRB protein; TPR, prot 99.8 8.6E-17 2.9E-21 126.3 20.9 203 17-230 21-223 (243)
47 2vq2_A PILW, putative fimbrial 99.8 7.1E-16 2.4E-20 119.5 25.7 202 17-228 6-210 (225)
48 1xi4_A Clathrin heavy chain; a 99.8 9E-15 3.1E-19 134.7 36.2 220 31-297 1088-1307(1630)
49 1xi4_A Clathrin heavy chain; a 99.8 6.8E-15 2.3E-19 135.5 34.4 302 17-366 983-1306(1630)
50 3e4b_A ALGK; tetratricopeptide 99.8 2.3E-16 7.9E-21 135.1 23.6 313 24-368 8-350 (452)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 1E-16 3.5E-21 128.4 20.3 252 29-293 15-269 (275)
52 3spa_A Mtrpol, DNA-directed RN 99.8 2E-18 7E-23 153.6 9.8 150 60-214 127-286 (1134)
53 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-18 6E-23 154.1 9.3 119 18-142 126-248 (1134)
54 2ho1_A Type 4 fimbrial biogene 99.8 3.7E-15 1.2E-19 117.7 27.7 201 95-299 37-238 (252)
55 3sf4_A G-protein-signaling mod 99.7 5.2E-17 1.8E-21 137.7 17.6 300 16-322 6-364 (406)
56 2vq2_A PILW, putative fimbrial 99.7 5.4E-15 1.9E-19 114.5 27.5 166 59-227 7-174 (225)
57 2q7f_A YRRB protein; TPR, prot 99.7 4.1E-16 1.4E-20 122.4 21.1 165 60-228 23-187 (243)
58 4a1s_A PINS, partner of inscut 99.7 2E-16 6.9E-21 134.4 20.7 273 60-333 48-371 (411)
59 3sf4_A G-protein-signaling mod 99.7 3.8E-16 1.3E-20 132.4 21.8 303 57-360 6-367 (406)
60 4a1s_A PINS, partner of inscut 99.7 1.3E-16 4.3E-21 135.6 17.8 273 20-299 49-372 (411)
61 3ulq_A Response regulator aspa 99.7 4.1E-15 1.4E-19 125.1 26.2 295 69-367 21-366 (383)
62 3ro2_A PINS homolog, G-protein 99.7 8.3E-16 2.8E-20 126.7 20.4 276 60-367 5-330 (338)
63 3ro2_A PINS homolog, G-protein 99.7 5.2E-16 1.8E-20 127.9 19.0 238 18-262 4-290 (338)
64 2ond_A Cleavage stimulation fa 99.7 1.6E-14 5.6E-19 117.5 26.2 216 2-229 34-270 (308)
65 3ulq_A Response regulator aspa 99.7 5.1E-15 1.8E-19 124.5 22.6 300 28-333 21-367 (383)
66 2ond_A Cleavage stimulation fa 99.7 4.4E-14 1.5E-18 114.9 27.3 236 18-264 7-270 (308)
67 3vtx_A MAMA; tetratricopeptide 99.7 1.6E-14 5.4E-19 108.2 22.5 168 17-194 3-170 (184)
68 4abn_A Tetratricopeptide repea 99.7 3E-15 1E-19 129.0 20.6 217 110-332 83-319 (474)
69 4abn_A Tetratricopeptide repea 99.7 1.5E-14 5.1E-19 124.7 23.7 193 164-362 101-314 (474)
70 3vtx_A MAMA; tetratricopeptide 99.7 2.3E-14 7.8E-19 107.3 21.7 167 164-334 4-170 (184)
71 4e6h_A MRNA 3'-END-processing 99.7 2.2E-12 7.5E-17 114.4 35.7 129 3-139 51-194 (679)
72 3q15_A PSP28, response regulat 99.7 2.8E-13 9.6E-18 113.6 27.9 309 57-368 7-364 (378)
73 3nf1_A KLC 1, kinesin light ch 99.7 4.5E-15 1.5E-19 121.0 16.3 245 94-367 26-305 (311)
74 3nf1_A KLC 1, kinesin light ch 99.6 5.6E-15 1.9E-19 120.4 16.4 178 16-193 24-223 (311)
75 4e6h_A MRNA 3'-END-processing 99.6 5.5E-12 1.9E-16 111.9 35.9 358 2-368 84-569 (679)
76 3q15_A PSP28, response regulat 99.6 1.8E-13 6.3E-18 114.7 24.4 311 16-333 7-364 (378)
77 1hz4_A MALT regulatory protein 99.6 1.6E-12 5.6E-17 108.8 28.7 299 61-367 15-347 (373)
78 1hz4_A MALT regulatory protein 99.6 3.2E-12 1.1E-16 107.0 26.8 269 99-367 18-320 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.6 2.4E-13 8E-18 122.0 20.3 168 16-193 6-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.6 2.6E-13 9.1E-18 121.6 20.2 167 163-333 7-173 (723)
81 4i17_A Hypothetical protein; T 99.6 1.4E-12 4.7E-17 101.2 21.7 208 16-241 4-220 (228)
82 3as5_A MAMA; tetratricopeptide 99.6 9.3E-13 3.2E-17 98.4 19.9 164 20-193 9-172 (186)
83 4i17_A Hypothetical protein; T 99.6 2.2E-12 7.4E-17 100.1 22.0 210 57-278 4-222 (228)
84 3as5_A MAMA; tetratricopeptide 99.5 1.7E-12 5.9E-17 97.0 19.4 163 167-333 10-172 (186)
85 3edt_B KLC 2, kinesin light ch 99.5 4.8E-13 1.7E-17 107.2 15.3 227 141-368 12-280 (283)
86 1qqe_A Vesicular transport pro 99.5 2.2E-11 7.6E-16 98.1 23.5 234 78-334 3-269 (292)
87 3edt_B KLC 2, kinesin light ch 99.5 1.4E-12 4.8E-17 104.5 16.5 234 30-264 12-281 (283)
88 1qqe_A Vesicular transport pro 99.5 1.2E-11 4.2E-16 99.6 21.1 234 113-367 3-267 (292)
89 3mv2_B Coatomer subunit epsilo 99.4 2.5E-10 8.7E-15 90.3 24.9 245 26-300 20-283 (310)
90 3qky_A Outer membrane assembly 99.4 2.8E-11 9.5E-16 95.9 19.8 213 16-254 12-251 (261)
91 3mv2_B Coatomer subunit epsilo 99.4 2.3E-10 8E-15 90.5 24.4 244 67-334 20-282 (310)
92 3urz_A Uncharacterized protein 99.4 3.4E-11 1.1E-15 91.8 17.7 99 18-124 3-117 (208)
93 3dra_A Protein farnesyltransfe 99.4 1.5E-09 5.2E-14 86.7 27.8 218 111-333 49-286 (306)
94 3rjv_A Putative SEL1 repeat pr 99.4 1.5E-10 5.1E-15 88.4 21.3 176 2-195 4-198 (212)
95 2pzi_A Probable serine/threoni 99.4 1.4E-11 4.7E-16 111.0 17.9 174 30-215 402-583 (681)
96 3qky_A Outer membrane assembly 99.4 9.5E-11 3.2E-15 92.8 20.5 187 58-264 13-224 (261)
97 2uy1_A Cleavage stimulation fa 99.4 3.7E-09 1.2E-13 91.2 31.3 342 2-367 32-411 (493)
98 2pzi_A Probable serine/threoni 99.4 1.9E-11 6.4E-16 110.1 17.4 184 176-366 402-602 (681)
99 3urz_A Uncharacterized protein 99.4 1.1E-10 3.9E-15 88.8 19.1 74 171-246 60-133 (208)
100 3dra_A Protein farnesyltransfe 99.4 3.6E-09 1.2E-13 84.6 27.4 175 30-215 43-235 (306)
101 2fo7_A Synthetic consensus TPR 99.3 1.2E-10 4.2E-15 81.8 16.7 130 21-159 3-132 (136)
102 3rjv_A Putative SEL1 repeat pr 99.3 3E-10 1E-14 86.7 19.8 176 37-230 4-198 (212)
103 4ga2_A E3 SUMO-protein ligase 99.3 2E-11 6.7E-16 87.7 11.6 144 27-180 5-149 (150)
104 3qou_A Protein YBBN; thioredox 99.3 1.2E-10 4.1E-15 93.5 17.0 163 60-227 117-282 (287)
105 2fo7_A Synthetic consensus TPR 99.3 1.9E-10 6.4E-15 80.8 16.0 128 203-333 4-131 (136)
106 2r5s_A Uncharacterized protein 99.3 5.4E-11 1.9E-15 88.0 13.1 162 21-192 8-171 (176)
107 4ga2_A E3 SUMO-protein ligase 99.3 3.3E-11 1.1E-15 86.5 11.3 141 210-354 7-148 (150)
108 2uy1_A Cleavage stimulation fa 99.3 4E-09 1.4E-13 90.9 26.1 313 33-366 28-380 (493)
109 3qou_A Protein YBBN; thioredox 99.3 2.8E-10 9.7E-15 91.3 17.2 165 162-331 114-281 (287)
110 2r5s_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 88.7 11.4 77 289-366 93-170 (176)
111 2yhc_A BAMD, UPF0169 lipoprote 99.3 1E-09 3.6E-14 84.6 19.3 188 18-231 3-215 (225)
112 2vsy_A XCC0866; transferase, g 99.3 2.9E-10 9.8E-15 100.7 17.8 154 32-195 2-158 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 99.3 7.3E-10 2.5E-14 85.5 18.0 185 164-368 3-212 (225)
114 2ifu_A Gamma-SNAP; membrane fu 99.2 4.9E-10 1.7E-14 90.9 16.7 225 73-326 4-253 (307)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 6.1E-10 2.1E-14 90.4 16.8 227 31-291 3-253 (307)
116 3q7a_A Farnesyltransferase alp 99.2 5.1E-08 1.7E-12 78.8 27.4 217 147-368 71-330 (349)
117 2vsy_A XCC0866; transferase, g 99.2 4.8E-10 1.6E-14 99.2 17.1 150 1-160 6-158 (568)
118 3q7a_A Farnesyltransferase alp 99.2 5.3E-08 1.8E-12 78.7 25.3 184 21-215 56-257 (349)
119 3u3w_A Transcriptional activat 99.1 1.5E-08 5.1E-13 81.6 19.5 209 8-228 35-265 (293)
120 2c2l_A CHIP, carboxy terminus 99.1 1.9E-09 6.5E-14 86.1 14.0 196 17-228 2-198 (281)
121 3u3w_A Transcriptional activat 99.1 8.4E-08 2.9E-12 77.2 23.6 199 56-263 42-265 (293)
122 4gco_A Protein STI-1; structur 99.1 3.3E-09 1.1E-13 73.4 12.7 97 20-124 14-110 (126)
123 2c2l_A CHIP, carboxy terminus 99.1 1.8E-09 6.2E-14 86.2 12.9 95 132-228 6-100 (281)
124 2qfc_A PLCR protein; TPR, HTH, 99.1 5.5E-08 1.9E-12 78.3 20.9 164 62-226 77-263 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.3E-08 7.8E-13 76.3 17.8 131 165-300 6-151 (213)
126 1a17_A Serine/threonine protei 99.1 1.1E-08 3.9E-13 74.5 15.5 96 202-299 15-110 (166)
127 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.1E-08 1E-12 75.6 18.5 93 62-159 8-100 (213)
128 2lni_A Stress-induced-phosphop 99.0 9.7E-09 3.3E-13 71.7 14.1 100 17-124 14-113 (133)
129 3gyz_A Chaperone protein IPGC; 99.0 3.8E-09 1.3E-13 75.4 11.8 101 58-160 34-134 (151)
130 4gco_A Protein STI-1; structur 99.0 1.3E-08 4.4E-13 70.4 14.2 93 205-299 18-110 (126)
131 1a17_A Serine/threonine protei 99.0 1.3E-08 4.4E-13 74.2 15.0 96 21-124 15-110 (166)
132 2qfc_A PLCR protein; TPR, HTH, 99.0 3E-08 1E-12 79.8 18.4 171 21-192 77-264 (293)
133 3gyz_A Chaperone protein IPGC; 99.0 2.8E-09 9.4E-14 76.1 10.8 100 18-125 35-134 (151)
134 4f3v_A ESX-1 secretion system 99.0 3.5E-08 1.2E-12 77.1 17.6 188 31-230 18-238 (282)
135 2vyi_A SGTA protein; chaperone 99.0 9.4E-09 3.2E-13 71.5 13.2 118 18-144 11-128 (131)
136 3gw4_A Uncharacterized protein 99.0 9E-09 3.1E-13 77.8 14.0 158 176-334 3-176 (203)
137 4f3v_A ESX-1 secretion system 99.0 2E-08 6.7E-13 78.5 15.5 199 2-206 24-247 (282)
138 1na0_A Designed protein CTPR3; 99.0 2.3E-08 7.8E-13 68.8 14.6 98 19-124 9-106 (125)
139 3gw4_A Uncharacterized protein 99.0 9.6E-09 3.3E-13 77.7 13.6 156 30-192 3-174 (203)
140 2vgx_A Chaperone SYCD; alterna 99.0 1.2E-08 4.2E-13 72.7 13.0 110 6-124 9-118 (148)
141 1p5q_A FKBP52, FK506-binding p 99.0 1.2E-08 4.1E-13 83.7 14.7 151 179-332 127-292 (336)
142 2e2e_A Formate-dependent nitri 99.0 2.3E-08 7.9E-13 73.8 14.5 120 31-159 22-144 (177)
143 1p5q_A FKBP52, FK506-binding p 99.0 2.3E-09 7.9E-14 88.0 9.4 130 18-156 146-291 (336)
144 3dss_A Geranylgeranyl transfer 99.0 4.2E-06 1.4E-10 67.4 27.5 260 19-315 26-319 (331)
145 3dss_A Geranylgeranyl transfer 99.0 1E-06 3.4E-11 71.0 23.8 183 1-194 47-267 (331)
146 2lni_A Stress-induced-phosphop 98.9 6.6E-08 2.3E-12 67.4 15.3 98 200-299 16-113 (133)
147 2vyi_A SGTA protein; chaperone 98.9 5.2E-08 1.8E-12 67.6 14.2 60 272-332 48-107 (131)
148 2vgx_A Chaperone SYCD; alterna 98.9 1.8E-08 6.3E-13 71.8 11.9 110 41-159 9-118 (148)
149 2xcb_A PCRH, regulatory protei 98.9 7.6E-09 2.6E-13 73.4 9.7 109 7-124 7-115 (142)
150 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.8E-12 65.2 15.6 59 238-297 46-104 (125)
151 2e2e_A Formate-dependent nitri 98.9 1.2E-08 4E-13 75.4 10.9 123 70-195 20-145 (177)
152 3upv_A Heat shock protein STI1 98.9 4.4E-08 1.5E-12 67.8 12.9 98 19-124 4-101 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.9 1.2E-07 4.2E-12 64.3 14.2 98 19-124 4-101 (118)
154 2kck_A TPR repeat; tetratricop 98.9 3.8E-08 1.3E-12 66.3 11.4 99 18-124 5-106 (112)
155 2fbn_A 70 kDa peptidylprolyl i 98.9 5.7E-09 1.9E-13 78.7 7.4 151 172-325 11-176 (198)
156 3upv_A Heat shock protein STI1 98.8 5E-08 1.7E-12 67.5 11.5 99 234-334 3-101 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.8 1.1E-08 3.6E-13 77.2 8.5 121 71-194 15-151 (198)
158 2xcb_A PCRH, regulatory protei 98.8 3.4E-08 1.2E-12 69.9 10.5 99 234-334 17-115 (142)
159 4gcn_A Protein STI-1; structur 98.8 9E-08 3.1E-12 66.2 12.2 98 20-124 9-112 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.8 1.4E-07 4.9E-12 68.5 13.3 100 17-124 9-108 (164)
161 3q49_B STIP1 homology and U bo 98.8 1.8E-07 6.1E-12 65.6 13.1 99 17-123 7-105 (137)
162 3q49_B STIP1 homology and U bo 98.8 1.6E-07 5.3E-12 65.9 12.6 117 233-351 7-127 (137)
163 1elw_A TPR1-domain of HOP; HOP 98.8 8.6E-07 2.9E-11 60.0 15.8 89 242-332 11-99 (118)
164 1elr_A TPR2A-domain of HOP; HO 98.8 6.4E-08 2.2E-12 67.2 10.1 99 19-124 4-108 (131)
165 4gcn_A Protein STI-1; structur 98.8 2.7E-07 9.1E-12 63.8 12.9 60 168-228 11-70 (127)
166 2dba_A Smooth muscle cell asso 98.8 4.5E-07 1.5E-11 64.4 14.7 98 18-124 27-128 (148)
167 3sz7_A HSC70 cochaperone (SGT) 98.8 1.1E-07 3.8E-12 69.1 11.4 99 234-334 10-108 (164)
168 1hxi_A PEX5, peroxisome target 98.8 9.5E-08 3.3E-12 65.4 10.4 95 238-334 20-114 (121)
169 4b4t_Q 26S proteasome regulato 98.7 2.4E-06 8.2E-11 72.8 21.0 204 25-228 10-244 (434)
170 1hxi_A PEX5, peroxisome target 98.7 1.3E-07 4.6E-12 64.7 10.3 96 21-124 19-114 (121)
171 2kck_A TPR repeat; tetratricop 98.7 3.9E-07 1.3E-11 61.1 12.4 94 133-228 9-105 (112)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 3.2E-07 1.1E-11 78.6 13.9 150 181-333 250-414 (457)
173 1elr_A TPR2A-domain of HOP; HO 98.7 2.6E-07 8.9E-12 64.0 11.1 96 202-298 6-107 (131)
174 4b4t_Q 26S proteasome regulato 98.7 5.4E-06 1.8E-10 70.6 21.2 199 65-263 9-244 (434)
175 2dba_A Smooth muscle cell asso 98.7 2E-06 7E-11 60.9 15.7 98 59-159 27-128 (148)
176 2xev_A YBGF; tetratricopeptide 98.7 1.4E-06 4.7E-11 60.3 14.1 95 22-124 5-105 (129)
177 3ro3_A PINS homolog, G-protein 98.7 3.3E-07 1.1E-11 66.1 11.2 96 272-367 51-156 (164)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 7.2E-08 2.5E-12 82.6 7.9 124 18-150 267-405 (457)
179 1wao_1 Serine/threonine protei 98.6 8.8E-07 3E-11 76.2 14.6 118 174-294 15-134 (477)
180 1wao_1 Serine/threonine protei 98.6 5.3E-08 1.8E-12 83.8 5.3 125 21-154 8-134 (477)
181 1dce_A Protein (RAB geranylger 98.5 2.9E-06 9.8E-11 74.5 15.7 172 1-183 46-244 (567)
182 3rkv_A Putative peptidylprolyl 98.5 2E-06 7E-11 62.2 12.6 106 18-124 10-126 (162)
183 1ihg_A Cyclophilin 40; ppiase 98.5 1.4E-06 4.9E-11 72.2 13.0 127 19-147 223-358 (370)
184 1dce_A Protein (RAB geranylger 98.5 8.2E-06 2.8E-10 71.6 18.4 178 30-218 39-244 (567)
185 3ro3_A PINS homolog, G-protein 98.5 1.7E-06 5.9E-11 62.3 12.0 28 61-88 10-37 (164)
186 3k9i_A BH0479 protein; putativ 98.5 4.7E-07 1.6E-11 61.6 8.3 89 31-124 2-90 (117)
187 2xev_A YBGF; tetratricopeptide 98.5 7.8E-06 2.7E-10 56.4 14.7 26 98-123 42-67 (129)
188 3k9i_A BH0479 protein; putativ 98.5 4.9E-07 1.7E-11 61.4 7.9 82 1-89 7-90 (117)
189 1ihg_A Cyclophilin 40; ppiase 98.5 1.9E-06 6.4E-11 71.5 12.7 91 269-361 272-362 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.5 7.2E-07 2.5E-11 73.2 10.2 149 199-368 178-327 (338)
191 2hr2_A Hypothetical protein; a 98.5 1.8E-06 6.3E-11 60.9 10.5 96 237-333 13-130 (159)
192 2l6j_A TPR repeat-containing p 98.4 2.6E-07 9E-12 62.0 5.1 90 271-363 5-101 (111)
193 3rkv_A Putative peptidylprolyl 98.4 4E-06 1.4E-10 60.6 11.8 64 165-229 63-126 (162)
194 2hr2_A Hypothetical protein; a 98.4 6.4E-06 2.2E-10 58.2 11.3 105 19-123 11-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 98.4 1.4E-06 4.7E-11 71.5 9.2 148 19-193 179-327 (338)
196 2kat_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 56.7 9.9 81 1-89 2-82 (115)
197 3n71_A Histone lysine methyltr 98.4 3.1E-06 1.1E-10 72.5 11.4 124 245-368 319-463 (490)
198 1klx_A Cysteine rich protein B 98.4 1.6E-05 5.6E-10 55.6 13.2 89 66-160 31-127 (138)
199 3n71_A Histone lysine methyltr 98.4 2.1E-06 7.1E-11 73.6 9.8 131 28-158 318-463 (490)
200 1klx_A Cysteine rich protein B 98.3 2.8E-05 9.5E-10 54.4 13.1 111 74-195 9-127 (138)
201 2l6j_A TPR repeat-containing p 98.3 4.6E-06 1.6E-10 55.8 8.0 92 18-117 3-100 (111)
202 1na3_A Designed protein CTPR2; 98.2 1.4E-05 4.8E-10 51.1 9.6 79 19-105 9-87 (91)
203 1zu2_A Mitochondrial import re 98.2 5.1E-06 1.7E-10 58.6 7.3 93 1-103 19-132 (158)
204 2kat_A Uncharacterized protein 98.2 2.2E-05 7.6E-10 52.8 9.9 80 37-124 3-82 (115)
205 1na3_A Designed protein CTPR2; 98.1 2.2E-05 7.6E-10 50.1 9.3 78 272-351 11-88 (91)
206 1zu2_A Mitochondrial import re 98.1 1.4E-05 4.6E-10 56.4 7.4 99 29-137 12-131 (158)
207 3ma5_A Tetratricopeptide repea 98.1 2.5E-05 8.4E-10 51.1 8.4 66 16-88 4-69 (100)
208 3ma5_A Tetratricopeptide repea 98.0 4.4E-05 1.5E-09 49.9 8.2 64 269-333 6-69 (100)
209 3ly7_A Transcriptional activat 97.9 0.00043 1.5E-08 56.1 14.5 50 15-71 190-244 (372)
210 3qwp_A SET and MYND domain-con 97.7 0.00048 1.7E-08 58.1 11.4 100 24-123 292-399 (429)
211 3qww_A SET and MYND domain-con 97.6 0.00017 5.8E-09 60.8 8.3 93 31-123 310-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.6 0.0002 7E-09 46.4 6.7 83 241-333 6-89 (99)
213 3qww_A SET and MYND domain-con 97.6 0.00021 7.3E-09 60.2 8.3 62 272-333 342-410 (433)
214 3bee_A Putative YFRE protein; 97.6 0.00075 2.6E-08 43.1 8.7 67 16-89 3-72 (93)
215 2kc7_A BFR218_protein; tetratr 97.5 0.00077 2.6E-08 43.6 8.8 56 208-264 8-64 (99)
216 3qwp_A SET and MYND domain-con 97.5 0.00061 2.1E-08 57.5 9.9 91 243-333 295-399 (429)
217 3ly7_A Transcriptional activat 97.5 0.021 7.1E-07 46.5 17.9 64 234-299 276-339 (372)
218 3bee_A Putative YFRE protein; 97.4 0.0011 3.8E-08 42.3 8.4 67 267-334 3-72 (93)
219 1pc2_A Mitochondria fission pr 97.4 0.00079 2.7E-08 46.9 8.1 89 248-340 11-104 (152)
220 4h7y_A Dual specificity protei 97.3 0.0045 1.5E-07 42.6 10.4 105 16-128 10-127 (161)
221 3u64_A Protein TP_0956; tetrat 97.3 0.02 6.7E-07 44.7 15.2 93 146-238 179-280 (301)
222 1pc2_A Mitochondria fission pr 97.2 0.0046 1.6E-07 43.1 10.1 66 58-124 30-100 (152)
223 3lvg_A Clathrin heavy chain 1; 97.2 3.6E-08 1.2E-12 81.2 -17.9 265 59-360 53-324 (624)
224 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0033 1.1E-07 41.1 8.7 74 16-89 2-75 (104)
225 3mkq_A Coatomer beta'-subunit; 97.2 0.032 1.1E-06 51.6 18.4 76 134-227 633-708 (814)
226 1nzn_A CGI-135 protein, fissio 97.1 0.0056 1.9E-07 41.0 9.3 92 241-334 7-103 (126)
227 3u64_A Protein TP_0956; tetrat 97.0 0.074 2.5E-06 41.6 17.0 85 111-197 179-272 (301)
228 2v5f_A Prolyl 4-hydroxylase su 97.0 0.012 4.2E-07 38.3 10.4 63 237-299 7-75 (104)
229 3mkq_B Coatomer subunit alpha; 97.0 0.043 1.5E-06 39.3 13.1 45 176-226 16-60 (177)
230 3mkq_A Coatomer beta'-subunit; 96.9 0.098 3.4E-06 48.3 19.0 102 137-262 606-708 (814)
231 4h7y_A Dual specificity protei 96.8 0.045 1.5E-06 37.8 11.6 64 248-313 73-136 (161)
232 3mkq_B Coatomer subunit alpha; 96.8 0.078 2.7E-06 38.0 13.5 43 72-120 17-59 (177)
233 4ady_A RPN2, 26S proteasome re 96.6 0.44 1.5E-05 44.1 24.3 154 140-297 500-656 (963)
234 1nzn_A CGI-135 protein, fissio 96.4 0.034 1.2E-06 37.3 8.6 83 35-124 17-103 (126)
235 3lvg_A Clathrin heavy chain 1; 96.4 0.00074 2.5E-08 56.4 0.7 83 18-114 53-135 (624)
236 4ady_A RPN2, 26S proteasome re 96.1 0.89 3E-05 42.1 25.9 261 68-333 382-657 (963)
237 4gns_B Protein CSD3, chitin bi 96.0 0.089 3.1E-06 47.4 11.8 51 314-365 346-396 (754)
238 4gns_B Protein CSD3, chitin bi 96.0 0.11 3.6E-06 47.0 12.2 55 277-332 344-398 (754)
239 2ff4_A Probable regulatory pro 95.4 0.08 2.7E-06 44.0 8.8 75 61-136 172-251 (388)
240 1wy6_A Hypothetical protein ST 95.3 0.4 1.4E-05 32.5 12.7 139 72-232 19-157 (172)
241 1wy6_A Hypothetical protein ST 95.3 0.4 1.4E-05 32.4 13.1 67 269-336 90-156 (172)
242 4fhn_B Nucleoporin NUP120; pro 95.2 1.3 4.6E-05 42.7 17.4 130 132-263 901-1049(1139)
243 1v54_E Cytochrome C oxidase po 95.1 0.15 5.1E-06 32.3 7.0 60 2-68 28-87 (109)
244 3o48_A Mitochondria fission 1 95.0 0.27 9.3E-06 33.1 8.7 73 265-339 35-110 (134)
245 3ffl_A Anaphase-promoting comp 95.0 0.19 6.6E-06 35.4 8.2 61 237-297 22-90 (167)
246 4fhn_B Nucleoporin NUP120; pro 94.6 1.9 6.5E-05 41.7 16.8 132 166-299 900-1050(1139)
247 2ff4_A Probable regulatory pro 94.5 0.3 1E-05 40.6 10.1 55 241-296 177-231 (388)
248 1y8m_A FIS1; mitochondria, unk 94.4 0.69 2.4E-05 31.6 9.6 72 266-339 35-109 (144)
249 1qsa_A Protein (soluble lytic 94.3 2.7 9.2E-05 37.3 28.1 310 29-367 16-346 (618)
250 4b4t_P 26S proteasome regulato 94.2 2.3 7.9E-05 36.1 18.9 93 99-191 141-244 (445)
251 3ffl_A Anaphase-promoting comp 93.8 1 3.4E-05 31.8 9.8 65 19-88 20-91 (167)
252 1v54_E Cytochrome C oxidase po 93.7 0.78 2.7E-05 29.1 9.7 61 251-312 26-86 (109)
253 3o48_A Mitochondria fission 1 93.6 1.1 3.8E-05 30.2 9.8 71 230-300 35-108 (134)
254 2y69_E Cytochrome C oxidase su 93.2 0.49 1.7E-05 31.8 7.0 59 3-68 72-130 (152)
255 2y69_E Cytochrome C oxidase su 92.4 1.7 5.8E-05 29.3 9.7 61 252-313 70-130 (152)
256 4b4t_R RPN7, 26S proteasome re 90.8 4.1 0.00014 34.3 11.9 97 96-192 132-235 (429)
257 1zbp_A Hypothetical protein VP 90.6 4.9 0.00017 31.0 11.8 54 245-299 7-60 (273)
258 3txn_A 26S proteasome regulato 89.4 8.3 0.00028 31.9 22.6 236 20-261 20-281 (394)
259 4b4t_R RPN7, 26S proteasome re 88.2 6.9 0.00024 33.0 11.4 99 131-229 132-237 (429)
260 1zbp_A Hypothetical protein VP 88.1 2.3 8E-05 32.8 7.5 56 27-89 5-60 (273)
261 2wpv_A GET4, UPF0363 protein Y 87.9 8.9 0.00031 30.5 18.1 168 166-367 34-215 (312)
262 3lpz_A GET4 (YOR164C homolog); 87.8 9.4 0.00032 30.7 21.2 168 21-228 37-215 (336)
263 4b4t_P 26S proteasome regulato 87.8 12 0.0004 31.7 24.4 259 74-333 30-323 (445)
264 3lpz_A GET4 (YOR164C homolog); 87.7 9.6 0.00033 30.6 20.3 49 267-319 133-181 (336)
265 2wpv_A GET4, UPF0363 protein Y 87.1 10 0.00034 30.2 19.1 168 132-333 35-216 (312)
266 1y8m_A FIS1; mitochondria, unk 85.4 6.9 0.00024 26.8 12.5 68 232-299 36-106 (144)
267 3esl_A Checkpoint serine/threo 85.1 9.3 0.00032 28.0 9.3 55 74-128 93-148 (202)
268 3esl_A Checkpoint serine/threo 83.1 12 0.0004 27.5 9.2 54 250-303 94-148 (202)
269 4a1g_A Mitotic checkpoint seri 74.3 19 0.00065 25.0 9.2 52 114-165 84-136 (152)
270 2wvi_A Mitotic checkpoint seri 71.3 16 0.00054 25.8 6.4 48 2-49 78-126 (164)
271 2uwj_G Type III export protein 71.1 17 0.00058 23.0 8.1 79 248-335 19-98 (115)
272 2p58_C Putative type III secre 70.7 18 0.0006 23.0 8.9 79 248-335 20-99 (116)
273 2qx5_A Nucleoporin NIC96; mRNA 69.1 65 0.0022 28.9 19.6 26 21-47 155-180 (661)
274 2wvi_A Mitotic checkpoint seri 68.8 28 0.00095 24.6 9.0 50 79-128 79-129 (164)
275 2uwj_G Type III export protein 66.3 22 0.00076 22.5 8.3 7 143-149 52-58 (115)
276 2p58_C Putative type III secre 65.0 24 0.00082 22.4 9.1 9 142-150 52-60 (116)
277 2d2s_A Exocyst complex compone 64.6 44 0.0015 25.3 8.7 89 241-332 24-118 (235)
278 4aez_C MAD3, mitotic spindle c 64.3 39 0.0013 25.2 7.6 52 113-164 132-184 (223)
279 3ltm_A Alpha-REP4; protein eng 62.6 42 0.0014 24.4 17.2 49 268-320 124-172 (211)
280 4aez_C MAD3, mitotic spindle c 61.8 23 0.00077 26.5 6.0 49 1-49 131-180 (223)
281 4b4t_S RPN3, 26S proteasome re 59.9 86 0.0029 27.1 11.2 27 60-86 231-257 (523)
282 3eiq_C Programmed cell death p 59.0 72 0.0025 26.0 18.5 25 22-46 57-81 (358)
283 4gq2_M Nucleoporin NUP120; bet 58.0 1.3E+02 0.0044 28.6 12.4 48 132-179 899-950 (950)
284 2r9g_A AAA ATPase, central reg 57.8 53 0.0018 24.0 10.6 37 142-179 26-62 (204)
285 3eyy_A Putative iron uptake re 57.7 39 0.0013 23.1 6.4 63 6-76 6-68 (145)
286 2b7e_A PRE-mRNA processing pro 57.7 12 0.0004 21.0 2.9 32 1-32 3-35 (59)
287 2fe3_A Peroxide operon regulat 57.1 44 0.0015 22.9 7.5 63 6-75 9-71 (145)
288 3eu9_A Huntingtin-interacting 56.6 19 0.00066 26.7 5.3 16 245-260 217-232 (240)
289 2cos_A Serine/threonine protei 56.4 18 0.00061 19.7 3.4 38 4-46 10-49 (54)
290 3txn_A 26S proteasome regulato 56.3 86 0.0029 26.0 26.7 167 60-227 19-208 (394)
291 3bge_A Predicted ATPase; struc 56.2 56 0.0019 23.8 9.7 33 143-175 20-52 (201)
292 3eiq_C Programmed cell death p 56.1 82 0.0028 25.7 13.2 79 273-352 220-300 (358)
293 4a1g_A Mitotic checkpoint seri 55.8 49 0.0017 23.0 9.8 16 247-262 113-128 (152)
294 1mzb_A Ferric uptake regulatio 54.8 46 0.0016 22.4 6.4 62 8-76 7-69 (136)
295 4b4t_S RPN3, 26S proteasome re 53.5 1.1E+02 0.0038 26.5 12.5 69 92-160 228-300 (523)
296 2w57_A Ferric uptake regulatio 52.3 48 0.0017 22.8 6.2 63 7-76 5-68 (150)
297 4ets_A Ferric uptake regulatio 52.0 53 0.0018 23.0 6.4 63 8-77 22-86 (162)
298 1bpo_A Protein (clathrin); cla 51.8 85 0.0029 26.7 8.3 112 73-189 342-453 (494)
299 3ctd_A Putative ATPase, AAA fa 50.8 73 0.0025 23.5 9.9 37 143-179 48-84 (213)
300 3ygs_P Procaspase 9; apoptosis 50.6 44 0.0015 21.0 5.8 40 33-82 51-90 (97)
301 3bqo_A Telomeric repeat-bindin 50.5 34 0.0012 24.9 5.1 48 286-334 94-146 (211)
302 3ygs_P Procaspase 9; apoptosis 50.4 20 0.0007 22.5 3.7 34 2-39 55-88 (97)
303 3pvs_A Replication-associated 49.6 1.2E+02 0.0041 25.7 15.4 56 177-232 267-327 (447)
304 1qsa_A Protein (soluble lytic 48.6 1.5E+02 0.0051 26.5 35.0 179 179-363 228-436 (618)
305 1wdy_A 2-5A-dependent ribonucl 48.6 48 0.0016 25.3 6.5 48 282-329 191-240 (285)
306 2yru_A Steroid receptor RNA ac 48.2 42 0.0015 22.1 5.0 45 5-49 47-91 (118)
307 1bpo_A Protein (clathrin); cla 47.0 1.3E+02 0.0046 25.5 10.5 111 33-154 343-453 (494)
308 1wdy_A 2-5A-dependent ribonucl 45.8 96 0.0033 23.5 8.1 20 24-43 7-26 (285)
309 2ijq_A Hypothetical protein; s 45.7 76 0.0026 22.3 7.9 61 21-88 35-103 (161)
310 2xig_A Ferric uptake regulatio 44.2 75 0.0026 21.8 7.4 44 137-180 33-76 (150)
311 1ug3_A EIF4GI, eukaryotic prot 44.0 65 0.0022 26.0 6.6 25 133-157 14-38 (339)
312 3bu8_A Telomeric repeat-bindin 43.7 98 0.0033 23.0 12.5 21 278-298 122-142 (235)
313 3kea_A K1L; tropism, ANK repea 42.9 50 0.0017 25.6 5.8 186 25-237 34-225 (285)
314 2d2s_A Exocyst complex compone 42.6 1.1E+02 0.0037 23.2 10.1 21 172-192 25-45 (235)
315 2ion_A PDCD4, programmed cell 42.1 84 0.0029 21.8 10.4 65 168-233 12-78 (152)
316 2fu4_A Ferric uptake regulatio 41.6 54 0.0019 19.5 6.1 61 8-75 6-67 (83)
317 3eyy_A Putative iron uptake re 41.5 82 0.0028 21.5 6.0 58 121-180 10-67 (145)
318 3ltm_A Alpha-REP4; protein eng 41.4 98 0.0034 22.4 19.5 170 58-247 31-200 (211)
319 2crb_A Nuclear receptor bindin 40.5 52 0.0018 20.4 4.1 16 311-326 21-36 (97)
320 4ets_A Ferric uptake regulatio 40.5 92 0.0032 21.8 6.8 59 122-181 25-85 (162)
321 2fe3_A Peroxide operon regulat 40.3 86 0.0029 21.4 7.5 59 121-180 13-71 (145)
322 2r9g_A AAA ATPase, central reg 39.7 1.1E+02 0.0037 22.4 10.1 56 212-268 26-86 (204)
323 4gq2_M Nucleoporin NUP120; bet 39.7 2.5E+02 0.0087 26.6 11.7 49 166-214 898-950 (950)
324 2xig_A Ferric uptake regulatio 39.0 93 0.0032 21.4 8.1 43 172-214 33-75 (150)
325 2ion_A PDCD4, programmed cell 38.8 96 0.0033 21.5 8.7 68 21-95 11-80 (152)
326 3pvs_A Replication-associated 38.5 1.8E+02 0.0062 24.6 15.2 54 212-265 267-325 (447)
327 3bge_A Predicted ATPase; struc 37.5 1.2E+02 0.0041 22.2 9.1 24 213-236 20-43 (201)
328 2ijq_A Hypothetical protein; s 37.5 1.1E+02 0.0036 21.6 8.1 16 144-159 46-61 (161)
329 2w57_A Ferric uptake regulatio 37.4 99 0.0034 21.2 6.5 59 121-180 8-67 (150)
330 3ctd_A Putative ATPase, AAA fa 37.1 1.2E+02 0.0043 22.3 9.7 56 212-267 47-107 (213)
331 1ug3_A EIF4GI, eukaryotic prot 36.7 1.7E+02 0.0057 23.6 11.6 25 22-46 14-38 (339)
332 1mzb_A Ferric uptake regulatio 36.4 96 0.0033 20.8 6.8 58 122-180 10-68 (136)
333 2o03_A Probable zinc uptake re 36.4 90 0.0031 20.8 5.4 42 138-179 18-59 (131)
334 3bqo_A Telomeric repeat-bindin 35.4 77 0.0026 23.1 5.0 46 2-49 96-147 (211)
335 2o03_A Probable zinc uptake re 35.3 88 0.003 20.8 5.3 43 67-109 17-59 (131)
336 2nsz_A Programmed cell death p 35.2 99 0.0034 20.6 11.7 65 168-233 10-76 (129)
337 3mwm_A ZUR, putative metal upt 34.5 90 0.0031 21.1 5.2 44 136-179 19-62 (139)
338 3mwm_A ZUR, putative metal upt 34.4 78 0.0027 21.4 4.9 43 66-108 19-61 (139)
339 2qx5_A Nucleoporin NIC96; mRNA 33.7 2.7E+02 0.0091 25.1 16.3 80 206-296 300-382 (661)
340 2f6m_A Suppressor protein STP2 33.2 71 0.0024 18.3 4.4 41 239-280 6-46 (65)
341 1ya0_A SMG-7 transcript varian 32.0 2.5E+02 0.0084 24.2 10.0 66 32-105 165-230 (497)
342 3t8k_A Uncharacterized protein 31.5 1.4E+02 0.0048 21.2 7.5 64 66-129 41-108 (186)
343 2yru_A Steroid receptor RNA ac 31.1 1.1E+02 0.0037 20.1 4.9 42 82-123 48-89 (118)
344 3jxi_A Vanilloid receptor-rela 31.1 29 0.00097 26.4 2.6 27 68-94 10-36 (260)
345 3qil_A Clathrin heavy chain 1; 30.4 55 0.0019 21.6 3.3 53 132-187 34-86 (125)
346 2nsz_A Programmed cell death p 29.7 1.3E+02 0.0043 20.1 10.1 67 22-95 10-78 (129)
347 2rfa_A Transient receptor pote 29.4 1.7E+02 0.0057 21.4 7.6 56 172-228 158-222 (232)
348 3eu9_A Huntingtin-interacting 29.3 1.2E+02 0.0041 22.2 5.9 21 277-297 214-234 (240)
349 1oai_A Nuclear RNA export fact 28.9 53 0.0018 18.4 2.7 24 32-60 33-56 (59)
350 1wgl_A TOLL-interacting protei 28.3 68 0.0023 17.9 3.0 19 73-91 36-54 (59)
351 2p1h_A APAF-1, apoptotic prote 26.2 1.2E+02 0.004 18.7 6.7 61 5-79 26-86 (94)
352 3ltj_A Alpharep-4; protein eng 26.0 1.8E+02 0.0061 20.7 18.6 60 268-332 119-178 (201)
353 3qil_A Clathrin heavy chain 1; 25.7 61 0.0021 21.4 2.9 53 272-327 34-86 (125)
354 3hra_A Ankyrin repeat family p 24.8 1.5E+02 0.005 21.0 5.5 153 25-186 42-196 (201)
355 2keb_A DNA polymerase subunit 24.6 1.4E+02 0.0047 18.9 5.4 32 3-34 28-59 (101)
356 1n11_A Ankyrin; clathrin, BAND 24.3 2E+02 0.0067 23.8 6.8 39 5-43 28-68 (437)
357 2bn5_A PSI; nuclear protein, s 24.0 70 0.0024 15.2 2.8 23 346-368 8-30 (33)
358 3t5v_B Nuclear mRNA export pro 23.9 1.9E+02 0.0066 24.5 6.4 28 63-90 179-206 (455)
359 2rpa_A Katanin P60 ATPase-cont 22.7 62 0.0021 19.4 2.3 23 310-332 17-39 (78)
360 2ko4_A Mediator of RNA polymer 22.6 89 0.003 18.7 2.8 33 14-46 31-63 (81)
361 2p22_A Suppressor protein STP2 22.6 93 0.0032 22.2 3.6 53 17-76 109-161 (174)
362 3jxi_A Vanilloid receptor-rela 22.4 2.4E+02 0.0084 21.0 7.2 21 175-195 12-32 (260)
363 1a1w_A FADD protein; apoptosis 22.2 1.1E+02 0.0038 18.9 3.5 11 39-49 43-53 (91)
364 2zu6_B Programmed cell death p 21.1 3.1E+02 0.011 21.7 16.9 65 168-233 169-235 (307)
365 1k1a_A B-cell lymphoma 3-encod 20.9 2.5E+02 0.0085 20.5 8.5 24 26-49 13-36 (241)
366 2zu6_B Programmed cell death p 20.5 3.2E+02 0.011 21.6 13.4 65 273-338 169-235 (307)
367 1ya0_A SMG-7 transcript varian 20.4 4.1E+02 0.014 22.9 10.7 75 241-317 158-232 (497)
368 3ka8_A Ferritin, middle subuni 20.3 95 0.0033 22.1 3.4 17 34-50 59-75 (176)
369 2qfz_A TBC1 domain family memb 20.3 3.4E+02 0.012 21.8 8.0 78 257-334 231-315 (345)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=265.38 Aligned_cols=232 Identities=10% Similarity=0.017 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33333333333333333333333333322 3356666777777777777777777777776653 445667777777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+.|++++|..+|+++.+.+. .+..++..++.+|.+.|++++|..+|+.+.+.. +.+..++..++..|.+.|++++|..
T Consensus 419 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777776543 356677777777777777777777777777653 3466777777777777777777777
Q ss_pred HHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 292 LFRTLRIL----KYELD--IRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 292 ~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|+++.+. +..|+ ..+|..++.+|.+.|++++|...|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777655 44455 5677777777777777777777777777764 33667777777777777777777777777
Q ss_pred hhc
Q 036461 366 MEA 368 (369)
Q Consensus 366 m~~ 368 (369)
+.+
T Consensus 576 ~l~ 578 (597)
T 2xpi_A 576 SLA 578 (597)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-36 Score=266.13 Aligned_cols=328 Identities=10% Similarity=0.013 Sum_probs=252.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCc-----------------------------------------
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV----------------------------------------- 54 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------------------------------- 54 (369)
+++..+|+.++.++.+.|++++|+++|+++.+.++....
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 446889999999999999999999999999876632100
Q ss_pred -----------------------ccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 036461 55 -----------------------VCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 111 (369)
Q Consensus 55 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (369)
..+++..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 013566777777777777888888888887777653 33667777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036461 112 NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.++.+.|++++|.++|+++
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887777553 4467778888888888888888888888887754 346778888888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCC
Q 036461 192 ESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVA 267 (369)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 267 (369)
...+ +.+..++..++.+|.+.|++++|..+|+++.+.... +..+|..++..+.+.|++++|..+++++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 7764 557778888888888888888888888888876433 6778888888888888888888888887764 445
Q ss_pred cC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHH
Q 036461 268 AD--TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNI 345 (369)
Q Consensus 268 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (369)
|+ ..++..++.+|.+.|++++|...++++.+.+ +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 65 6788888888888888888888888888765 5577888888888888888888888888887753 224556655
Q ss_pred HHHHH
Q 036461 346 MIHAL 350 (369)
Q Consensus 346 l~~~~ 350 (369)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.4e-32 Score=230.01 Aligned_cols=352 Identities=16% Similarity=0.086 Sum_probs=313.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.++.+.+.. |.+..++..+...+...|++++|...++...+.. |.+..+|..+..++.+.|++++|+
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 47899999998875 6677788888999999999999999999999876 677899999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
..|+++.+.. |.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998763 4467789999999999999999999999999874 2355677788889999999999999999999875
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+.+..++..+...+...|++++|...|+++...+ +.+...+..+...+...|++++|...+.+.....+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 4468899999999999999999999999999875 566788999999999999999999999999986433 6788899
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
+...+...|++++|...++++.+.+ +.+..++..++..+.+.|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999874 3467889999999999999999999999999876 7788999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 321 LKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+++|...++++.+.. +.+..++..++.++.+.|++++|++.|+++.+
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999998863 44678999999999999999999999998864
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.9e-30 Score=216.27 Aligned_cols=338 Identities=16% Similarity=0.073 Sum_probs=298.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 81 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (369)
+|...++...+.. |.+..+|..+...+.+.|++++|+..|+++.... |.+..+|..++.++.+.|++++|.+
T Consensus 51 ~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 51 RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6788888888775 7788999999999999999999999999999866 4567789999999999999999999
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
.|+++.+.. |.+...+..+...+...|++++|...|+++.... +.+..+|..+...+...|++++|...|+++.+.+
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD- 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 999998863 3356778889999999999999999999999874 3367889999999999999999999999999876
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
+.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...++++.+.++. +..++..+
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 277 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNL 277 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 4467889999999999999999999999998875 556888999999999999999999999999997533 57789999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+.+.|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999874 5688899999999999999999999999998765 56788999999999999999
Q ss_pred HHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCc
Q 036461 322 KIAWELFRSLPRGVLIADVVTYNIMIHALCADGK 355 (369)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (369)
++|...|+++.+.. +.+...|..+..++...|+
T Consensus 356 ~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 356 QEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 99999999998863 2356788888887776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-32 Score=236.65 Aligned_cols=205 Identities=14% Similarity=0.191 Sum_probs=182.3
Q ss_pred HHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC------
Q 036461 3 AAALFMKLRVFGCEPNVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF------ 75 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (369)
+..+.+++.+.+..+.+. .++.+|..|++.|++++|+++|++|.+.+ ++||..+|+.||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 456677788777766655 58899999999999999999999999999 89999999999999987654
Q ss_pred ---hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 76 ---VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 76 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..+...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-32 Score=232.88 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=119.1
Q ss_pred HHHHHhHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC---------hhHHH
Q 036461 81 ELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK---------MDEAS 150 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 150 (369)
.+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.+. .+.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444433332 23555556666666666666666666666666666666666666554433 35566
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 231 IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
+.||..||+.|+.+|++.|+.++|.+++++|.+.+..|+..|++.++..|..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666665543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.5e-27 Score=205.55 Aligned_cols=327 Identities=13% Similarity=0.046 Sum_probs=271.1
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 84 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (369)
..|....... |.+...|..+...+.+.|++++|+.+|+++.... +.+..++..++.++...|++++|+..|+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455555543 6678899999999999999999999999999876 5678999999999999999999999999
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhCCChhHH
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV---VSFNVI------------MNELCKNGKMDEA 149 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 149 (369)
++.+.+ +.+..++..+..+|.+.|++++|...|+++..... .+. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998864 44788999999999999999999999999998642 233 455444 4458899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
...++.+.+.. +.+..++..++.++...|++++|...|+++.... +.+..++..++.++...|++++|...++++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 4578889999999999999999999999998764 567889999999999999999999999999986
Q ss_pred CCCCcHHhHHHH------------HHHHHhcccHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhCCCHHHHHHH
Q 036461 230 GIKPDVVIYNTL------------FIGLFEIHQVERAFKLFDEMQRHGVAAD-----TWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 230 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
.+. +...+..+ +..+...|++++|...++.+.+.. |+ ...+..++.++.+.|++++|...
T Consensus 241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 432 34444444 788999999999999999998853 33 34788889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
++++.... +.+..++..++.+|...|++++|...|+++.+... -+...+..+..
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 371 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 99998875 56789999999999999999999999999988532 25566666663
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-28 Score=210.62 Aligned_cols=352 Identities=10% Similarity=-0.042 Sum_probs=298.1
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|+..|+++.+.+ |++.+|..+..++.+.|++++|+..++++.+.+ |.+..++..++.++...|++++|+
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 37999999999985 799999999999999999999999999999876 566889999999999999999999
Q ss_pred HHHHHhHhCCCC--------------------------------------------------------------------
Q 036461 81 ELFLKMKDENIN-------------------------------------------------------------------- 92 (369)
Q Consensus 81 ~~~~~~~~~~~~-------------------------------------------------------------------- 92 (369)
..|+++...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 94 FDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 999998775421
Q ss_pred ----------CCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCChhhHHHHHHHHHhCCCh
Q 036461 93 ----------PNVVTYNSLIHGFCY---ANDWNEAKCLFIEMMD-----QGV--------QPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 93 ----------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~ 146 (369)
.+...+......+.. .|++++|...|+++.. ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 013333334444443 8999999999999987 311 12345778888999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
++|...++.+.+.... ...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999987533 8888999999999999999999999998875 556788999999999999999999999999
Q ss_pred HhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--
Q 036461 227 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD-- 304 (369)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 304 (369)
.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 407 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDG 407 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSS
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccch
Confidence 987543 66788899999999999999999999998864 3467788999999999999999999999998653 222
Q ss_pred ----HHHHHHHHHHHHc---CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 305 ----IRAYNCLIDGLCK---SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 305 ----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
...+..++..+.. .|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.|++..+
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3388999999999 999999999999998753 33678889999999999999999999998753
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=5.6e-26 Score=195.75 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=261.5
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (369)
.+...+..+...+ |.+...+..++..+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|..
T Consensus 10 ~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 81 (450)
T 2y4t_A 10 GVDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALP 81 (450)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555544 567889999999999999999999999999876 34578999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH---HHHHHH------------HHHHHhcCCh
Q 036461 117 LFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA---FVYNTL------------MDGFCLTGRV 181 (369)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~ 181 (369)
.|+++.+.+ +.+..++..+..++...|++++|...|+.+.+.. +.+. ..+..+ ...+...|++
T Consensus 82 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 82 DLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999875 3367889999999999999999999999999875 2234 455544 4458899999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
++|...++++.... +.+..++..++.++...|++++|...|+++.+... .+..++..++..+...|++++|...++.+
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998875 56788899999999999999999999999988643 36789999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHH
Q 036461 262 QRHGVAADTWAYRTF------------IDGLCKNGYIVEAVELFRTLRILKYELD----IRAYNCLIDGLCKSGRLKIAW 325 (369)
Q Consensus 262 ~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 325 (369)
.+.. +.+...+..+ +..+...|++++|...|+++.... +.+ ...+..++.++.+.|++++|.
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 8763 3345555444 788999999999999999999864 223 447888999999999999999
Q ss_pred HHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 326 ELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..++++.+.. +.+..+|..++.+|...|++++|.+.++++.+
T Consensus 316 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 316 RVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999988752 33688999999999999999999999998764
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4.2e-25 Score=194.63 Aligned_cols=353 Identities=12% Similarity=0.033 Sum_probs=279.7
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|+++.+.. |.++.+|..+..++.+.|++++|+..|+++.+.+ |.+..++..+..++...|++++|+
T Consensus 42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 42 NEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHH
Confidence 47899999999886 6788899999999999999999999999999876 567888999999999999999999
Q ss_pred HHHHHhHhCCCC------------------------------------CCHH----------------------------
Q 036461 81 ELFLKMKDENIN------------------------------------PNVV---------------------------- 96 (369)
Q Consensus 81 ~~~~~~~~~~~~------------------------------------~~~~---------------------------- 96 (369)
..|+.+...... |+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 988643211000 0000
Q ss_pred --hHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 97 --TYNSLIHGFCY--------ANDWNEAKCLFIEMMDQGVQPNV-------VSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 97 --~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
....+...+.. .+++++|..+++++.+.... +. .++..+...+...|++++|...++.+.+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 11111111111 24788899999988876322 22 24666777888999999999999999987
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH
Q 036461 160 GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 239 (369)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (369)
. |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..+. +...+.
T Consensus 273 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 348 (537)
T 3fp2_A 273 H--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYI 348 (537)
T ss_dssp C--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHH
T ss_pred C--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 4 457888899999999999999999999998875 567888999999999999999999999999987533 567888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHH
Q 036461 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-----LDIRAYNCLIDG 314 (369)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 314 (369)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... .....+..+...
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998874 446778899999999999999999999998765311 122234455667
Q ss_pred HHcC----------CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 315 LCKS----------GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 315 ~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+... |++++|...|+++.+.. +.+..++..+..++.+.|++++|++.|++..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777 99999999999998753 33678899999999999999999999998753
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-25 Score=194.81 Aligned_cols=337 Identities=11% Similarity=-0.023 Sum_probs=284.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
....|......+.+.|++++|+..|+++...+ |+..+|..++.++.+.|++++|++.++++.+.+ |.+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 35678888999999999999999999999965 789999999999999999999999999998864 457789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN------------------------------------------------ 129 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------ 129 (369)
+..+..++...|++++|...|+++...+...+
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999999999987642110
Q ss_pred ------------------------------hhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCC--------Cc
Q 036461 130 ------------------------------VVSFNVIMNELCK---NGKMDEASRLLELMIQ-----IGV--------RP 163 (369)
Q Consensus 130 ------------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 163 (369)
...+......+.. .|++++|...++.+.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 2222333333343 7999999999999988 311 23
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
+..++..+...+...|++++|...++++.... |+...+..+..++...|++++|...++++...... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 46678888999999999999999999998875 33888899999999999999999999999987533 6678889999
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
.+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999874 3467788999999999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHhcccCCcc-cC----HHHHHHHHHHHHh---cCchHHHHHHHHHhhc
Q 036461 324 AWELFRSLPRGVLI-AD----VVTYNIMIHALCA---DGKMDKARDLFLDMEA 368 (369)
Q Consensus 324 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 368 (369)
|...++++.+.... ++ ...+..+..++.. .|++++|++.+++..+
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 99999998764211 11 3488899999999 9999999999998753
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.4e-24 Score=178.90 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=267.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
++..+..+...+...|++++|+..|+++.+.. |.++.++..+..++...|++++|+..++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 46788899999999999999999999999876 5678899999999999999999999999998863 447788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCc
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVSFNVI------------MNELCKNGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (369)
+..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999876320 244444444 578889999999999999999875 45
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHH----
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN---- 239 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 239 (369)
+...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|...+++..+..+. +...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH
Confidence 78889999999999999999999999998875 667888999999999999999999999999986433 333332
Q ss_pred --------HHHHHHHhcccHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 036461 240 --------TLFIGLFEIHQVERAFKLFDEMQRHGVAADT----WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRA 307 (369)
Q Consensus 240 --------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 307 (369)
.+...+...|++++|...++.+.+.... +. ..+..+..++...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 2366788999999999999999886422 33 235567889999999999999999999875 568889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh
Q 036461 308 YNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA 352 (369)
Q Consensus 308 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (369)
+..++..+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999999998863 2246666666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=4.3e-23 Score=172.21 Aligned_cols=303 Identities=11% Similarity=0.035 Sum_probs=256.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46778899999999999999999999998863 4578899999999999999999999999999874 336788999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCC--ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVR--PNAFVYNTL------------MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
++...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.... +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999987420 244455444 578899999999999999998875 56788899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHH----------
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR---------- 274 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 274 (369)
.+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 377889999999999999999999999998864 23444333
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 275 --TFIDGLCKNGYIVEAVELFRTLRILKYELDI----RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 275 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
.++..+...|++++|...++++.... +.+. ..+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 23667899999999999999999875 3333 235567889999999999999999998753 337889999999
Q ss_pred HHHhcCchHHHHHHHHHhhc
Q 036461 349 ALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 349 ~~~~~g~~~~A~~~~~~m~~ 368 (369)
++...|++++|.+.|++..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=8.2e-23 Score=168.51 Aligned_cols=295 Identities=14% Similarity=0.062 Sum_probs=252.1
Q ss_pred cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 036461 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV 135 (369)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (369)
.+.++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 35678889999999999999999999999998763 4466777788899999999999999999999874 346778899
Q ss_pred HHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC
Q 036461 136 IMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK 214 (369)
Q Consensus 136 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (369)
+...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 4467789999999999999999999999998875 445677778999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhCCCH
Q 036461 215 EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG--------VAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 286 (369)
++++|...++++.+..+. +...+..+...+...|++++|...++.+.+.. .+.....+..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999987543 67889999999999999999999999988642 133467889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHH-HhcCchH
Q 036461 287 VEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHAL-CADGKMD 357 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 357 (369)
++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999876 5678899999999999999999999999998863 33677888888888 4556544
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.2e-23 Score=180.37 Aligned_cols=336 Identities=11% Similarity=0.054 Sum_probs=267.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
....|..+...+.+.|++++|+..|+++...+ |.++.++..+..++.+.|++++|++.|+++.+.+ +.+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 45678899999999999999999999999976 5678999999999999999999999999998864 457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------------------------------------hh---------
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-------------------------------------VV--------- 131 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------~~--------- 131 (369)
+..+..++...|++++|...|+.+ .....+. ..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999999999643 2111100 00
Q ss_pred ---------------------hHHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCcc-------HHHHHHHHHHH
Q 036461 132 ---------------------SFNVIMNELCK--------NGKMDEASRLLELMIQIGVRPN-------AFVYNTLMDGF 175 (369)
Q Consensus 132 ---------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 175 (369)
....+...+.. .|++++|..+++.+.+.... + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 11111111111 14788899999988876422 2 23566777888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...|++++|...++++.... |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999998874 45788889999999999999999999999987543 6778999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
..++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999998864 3456788899999999999999999999999875 6678899999999999999999999999987632
Q ss_pred cc-----cCHHHHHHHHHHHHhc----------CchHHHHHHHHHhhc
Q 036461 336 LI-----ADVVTYNIMIHALCAD----------GKMDKARDLFLDMEA 368 (369)
Q Consensus 336 ~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 368 (369)
.. .....+.....++.+. |++++|+..|++..+
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 11 1223345556778888 999999999998753
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.5e-23 Score=169.58 Aligned_cols=295 Identities=13% Similarity=0.020 Sum_probs=253.4
Q ss_pred CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 15 CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
.+.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 89 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSN 89 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCC
Confidence 46677888999999999999999999999999876 5667888889999999999999999999998863 447
Q ss_pred HHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYAN-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
...+..+...+...| ++++|...|++..... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888999999999999 9999999999999874 3367788999999999999999999999999875 335667777999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC--------CCCcHHhHHHHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG--------IKPDVVIYNTLFIGL 245 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 245 (369)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. .+....++..+...+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999875 5678889999999999999999999999998742 133456888999999
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGL-CKSGRLK 322 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 322 (369)
...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999998864 3467889999999999999999999999998775 55778888888877 4555543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=7e-20 Score=159.17 Aligned_cols=331 Identities=15% Similarity=0.035 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----c
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----E 73 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 73 (369)
+|+..|++..+.| ++.++..+...+.. .+++++|+..|++..+.+ ++..+..|...|.. .
T Consensus 61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 5777777777654 56677777777877 788888888888877643 45667777777777 6
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCC
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGK 145 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (369)
+++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888887764 56677777777776 678888888888887764 56677777777777 788
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChH
Q 036461 146 MDEASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIE 217 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 217 (369)
.++|..+|+...+.+ +...+..+...|.. .+++++|..+|++....+ +...+..+...+.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 888888888887765 45566677777775 778888888888887664 34455666666666 78888
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-----ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEI-----HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEA 289 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 289 (369)
+|...|++..+.+ +...+..+...|... +++++|..+++...+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 8888888888764 455666777777776 78899999998888764 4566777777777766 78889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHH
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCK----SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARD 361 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 361 (369)
...|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|.+
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99998888764 67788888888888 789999999999988764 56778888888888 789999999
Q ss_pred HHHHhhc
Q 036461 362 LFLDMEA 368 (369)
Q Consensus 362 ~~~~m~~ 368 (369)
+|++..+
T Consensus 425 ~~~~A~~ 431 (490)
T 2xm6_A 425 WFDTAST 431 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=1.5e-22 Score=169.66 Aligned_cols=288 Identities=13% Similarity=-0.010 Sum_probs=188.1
Q ss_pred cCChHHHHH-HHHHhHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 73 EGFVDKAKE-LFLKMKDENI---NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 73 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
.|++++|++ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554433211 0123445556666666666666666666666553 2345556666666666666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHH---------------HHHHHhhc
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSI---------------LINGYCKN 213 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 213 (369)
|...++.+.+.. +.+..++..+..++...|++++|...++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666554 3355566666666666666666666666665543 222211110 12233377
Q ss_pred CChHHHHHHHHHHHhCCCCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888764322 46778888888888888888888888887763 34677888888888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc----------CHHHHHHHHHHHHhcCchHHHHHH
Q 036461 293 FRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA----------DVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
++++.... +.+..++..++.+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88888765 5567888888888888999999988888876632111 157888888999999999998887
Q ss_pred HHH
Q 036461 363 FLD 365 (369)
Q Consensus 363 ~~~ 365 (369)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=5.3e-22 Score=166.31 Aligned_cols=294 Identities=12% Similarity=-0.011 Sum_probs=235.6
Q ss_pred HHhcCChhHHHH-HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh
Q 036461 29 LCRTGHTIVALN-LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 107 (369)
Q Consensus 29 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (369)
+...|++++|+. .|++.....+.. ...+...+..+...+...|++++|+..|+++.+.. +.+..++..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN---PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSC---TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC---cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445678899998 888766554210 11135678899999999999999999999999873 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHH---------------HH
Q 036461 108 ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNT---------------LM 172 (369)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~ 172 (369)
.|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 999999999999999875 347888999999999999999999999999987532 2222211 23
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc
Q 036461 173 DGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (369)
..+...|++++|...++++.... +. +..++..+...+...|++++|...++++....+ .+..++..+...+...|+
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCC
Confidence 34448999999999999998875 33 578899999999999999999999999998743 367889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHcCC
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD-----------IRAYNCLIDGLCKSG 319 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g 319 (369)
+++|...++++.+.. +.+...+..+..+|...|++++|...++++.... +.+ ..+|..+..+|...|
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999999998864 4568899999999999999999999999998753 222 688999999999999
Q ss_pred CHHHHHHHHHhcc
Q 036461 320 RLKIAWELFRSLP 332 (369)
Q Consensus 320 ~~~~a~~~~~~~~ 332 (369)
++++|..++++..
T Consensus 345 ~~~~A~~~~~~~l 357 (368)
T 1fch_A 345 QSDAYGAADARDL 357 (368)
T ss_dssp CGGGHHHHHTTCH
T ss_pred ChHhHHHhHHHHH
Confidence 9999999988654
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=5.6e-19 Score=153.51 Aligned_cols=329 Identities=13% Similarity=0.019 Sum_probs=278.3
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCC
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGF 75 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 75 (369)
++.+....+ +.++.++..+...+.. .+++++|+..|++..+.+ ++..+..|...|.. .++
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence 344555444 3478888889999988 899999999999998754 56788889999998 899
Q ss_pred hHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChh
Q 036461 76 VDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMD 147 (369)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 147 (369)
+++|++.|++..+.| ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998865 67788888888988 789999999999998875 56778888888887 78999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChHHH
Q 036461 148 EASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGA 219 (369)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 219 (369)
+|...|+...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999875 67788888888888 899999999999998865 45667777777876 7899999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC-----CCHHHHH
Q 036461 220 LSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN-----GYIVEAV 290 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~ 290 (369)
..+|++..+.+ +...+..+...+.. .+++++|..+++...+.+ +...+..+...|... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999999864 45667777777877 899999999999998764 566778888888887 8999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHH
Q 036461 291 ELFRTLRILKYELDIRAYNCLIDGLCKSG---RLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLF 363 (369)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 363 (369)
..|++..+.+ +...+..+...|...| ++++|...|++..+.+ ++..+..+...|.. .+++++|+++|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999865 5567888888888766 7899999999998863 67888899999998 89999999999
Q ss_pred HHhhc
Q 036461 364 LDMEA 368 (369)
Q Consensus 364 ~~m~~ 368 (369)
++..+
T Consensus 391 ~~A~~ 395 (490)
T 2xm6_A 391 RKAAE 395 (490)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.8e-22 Score=167.78 Aligned_cols=266 Identities=11% Similarity=-0.010 Sum_probs=171.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557888888888888888888888887753 4467778888888888888888888888887764 335677777888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCcc----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPN----------AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSIL 206 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 206 (369)
++...|++++|...++.+.+... .+ ...+..+...+...|++++|...++++.... +. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 88888888888888888776531 11 1122334566666777777777777776653 22 45666666
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 286 (369)
...+...|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 6777777777777777777666532 245566666666777777777777776666643 23456666666666677777
Q ss_pred HHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 287 VEAVELFRTLRILKYE-----------LDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 287 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
++|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777777666543210 0245566666666666666666665554
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=3.3e-22 Score=167.38 Aligned_cols=267 Identities=13% Similarity=-0.003 Sum_probs=222.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD 173 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (369)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999999875 3478899999999999999999999999999875 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHH----------HHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-CcHHhHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVF----------SYSILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIYNTLF 242 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 242 (369)
++...|++++|...++++.... +.+.. .+..+...+...|++++|...++++.+..+. ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998763 22222 2334578899999999999999999987433 2678899999
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..+...|++++|...++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+..++..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999874 4578899999999999999999999999999875 567889999999999999999
Q ss_pred HHHHHHHhcccCCcc-----------cCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 323 IAWELFRSLPRGVLI-----------ADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
+|...|+++.+.... .+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998763211 1257899999999999999999887654
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=7.1e-21 Score=156.70 Aligned_cols=279 Identities=8% Similarity=-0.046 Sum_probs=165.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45667778888888888888888888887753 3467777788888888888888888888887763 335667777777
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH-HH-HHhhcCCh
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL-IN-GYCKNKEI 216 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 216 (369)
.+...|++++|...++.+.+.... +...+..+.... ++......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888887765321 222222220000 000001111 11 24455555
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 217 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666555554322 44555555556666666666666666655542 234555566666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-----------CHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA-----------DVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.+.. +.+..++..++..+...|++++|...++++.+..... +..+|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5543 3445566666666666666666666666655431110 245566666666666666666666544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=1.5e-20 Score=154.75 Aligned_cols=282 Identities=9% Similarity=-0.057 Sum_probs=197.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 45567888999999999999999999999876 5678899999999999999999999999998863 457889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHH--HH
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMD--GF 175 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~ 175 (369)
+..+...+...|++++|...++++...... +...+..+.... |+......+.. .+
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence 999999999999999999999999886422 333333321100 11111112212 25
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666666666553 34556666666666777777777777776666532 24566667777777777777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCCHHHH
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-----------DIRAYNCLIDGLCKSGRLKIA 324 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a 324 (369)
..++++.+.. +.+...+..+..++...|++++|...++++....... +..++..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 7777776653 3356677777777778888888888887777653111 466777788888888888888
Q ss_pred HHHHHhccc
Q 036461 325 WELFRSLPR 333 (369)
Q Consensus 325 ~~~~~~~~~ 333 (369)
..++++..+
T Consensus 306 ~~~~~~~l~ 314 (327)
T 3cv0_A 306 ELTYAQNVE 314 (327)
T ss_dssp HHHTTCCSH
T ss_pred HHHHHHHHH
Confidence 888876654
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.5e-18 Score=150.91 Aligned_cols=354 Identities=10% Similarity=-0.023 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH-HhcCChHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL-CKEGFVDKAK 80 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 80 (369)
+|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.
T Consensus 30 ~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 30 KARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHH
Confidence 5788888888763 6677788888888888888888888888888754 5666777666432 3456666655
Q ss_pred H----HHHHhHhC-CCC-CCHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-------
Q 036461 81 E----LFLKMKDE-NIN-PNVVTYNSLIHGFCY---------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN------- 138 (369)
Q Consensus 81 ~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 138 (369)
+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++....+....|.....
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 4 56655432 322 345666666665544 5778888888888776311111122221111
Q ss_pred ----------------------------------------------------------HHHh----CCCh----hHHHHH
Q 036461 139 ----------------------------------------------------------ELCK----NGKM----DEASRL 152 (369)
Q Consensus 139 ----------------------------------------------------------~~~~----~~~~----~~a~~~ 152 (369)
.... .++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 0000 0111 134455
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCL-------TGRVN-------RAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 55555542 3356677777777665 68877 899999999863235568888899999999999999
Q ss_pred HHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhCCCHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG-LCKNGYIVEAVELFRTL 296 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~ 296 (369)
|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+..
T Consensus 340 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 99999999986322 3 2478888888888999999999999988753 2233333332222 34689999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc-cc--CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 297 RILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL-IA--DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.+.. +.+...|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.+.+..+++++.+
T Consensus 418 l~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 418 LKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8764 55788999999999999999999999999887532 22 245888888888889999999998887753
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.6e-19 Score=154.24 Aligned_cols=347 Identities=12% Similarity=-0.063 Sum_probs=241.4
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCC-CC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----- 89 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 89 (369)
.....|+.+...+...|++++|++.|++..+.... .+ ..-+....+|+.+..+|...|++++|...++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987653100 00 001223568999999999999999999999987542
Q ss_pred C--CCCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhCCChhHHHHHHHHHHHcCCC
Q 036461 90 N--INPNVVTYNSLIHGFCY--ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE---LCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 90 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
+ ......++..+..++.. .+++++|+..|++..+..+ -+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11234566666655554 4579999999999988642 244555554444 445688899999999998875 3
Q ss_pred ccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhH
Q 036461 163 PNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 238 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (369)
.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 456666666655544 467889999999998775 667788999999999999999999999999987543 55666
Q ss_pred HHHHHHHHh-------------------cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 239 NTLFIGLFE-------------------IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 239 ~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+..+|.. .+.++.|...++...+.. +.+...+..+...+...|++++|...|+++...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 666665533 234667888888877754 345567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHhcccCCc-----------------------ccCHHHHHHHHHHHHhc
Q 036461 300 KYELDIR--AYNCLID-GLCKSGRLKIAWELFRSLPRGVL-----------------------IADVVTYNIMIHALCAD 353 (369)
Q Consensus 300 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~ 353 (369)
...+... .+..+.. .....|++++|+..|++..+... +.+..+|..+..+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5333221 2333332 34578999999999887764321 23466889999999999
Q ss_pred CchHHHHHHHHHhhc
Q 036461 354 GKMDKARDLFLDMEA 368 (369)
Q Consensus 354 g~~~~A~~~~~~m~~ 368 (369)
|++++|++.|++..+
T Consensus 444 g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 444 EKMQQADEDSERGLE 458 (472)
T ss_dssp HHCC-----------
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2.1e-18 Score=151.41 Aligned_cols=346 Identities=12% Similarity=0.024 Sum_probs=248.1
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
|++.++.. |-+..+|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666664 668889999998 478999999999999999976 667889999999999999999999999999
Q ss_pred HhCCCCCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHh---------CCChhHHH
Q 036461 87 KDENINPNVVTYNSLIHGF-CYANDWNEAKC----LFIEMMDQ-GVQP-NVVSFNVIMNELCK---------NGKMDEAS 150 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~ 150 (369)
... .|+...|..++... ...|+.+.|.+ +|++.+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred Hhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 986 35888887777533 35577776655 77766543 4333 45567766665544 57888999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHH-------------HhcCChH-----------------------------------
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGF-------------CLTGRVN----------------------------------- 182 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~----------------------------------- 182 (369)
.+|++.++.........|....... ...+++.
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9998887732111122222111100 0011112
Q ss_pred -------------------------HHHHHHHHHHhcCCCchHHHHHHHHHHHhh-------cCChH-------HHHHHH
Q 036461 183 -------------------------RAEELFVSMESMGCKHNVFSYSILINGYCK-------NKEIE-------GALSLY 223 (369)
Q Consensus 183 -------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 223 (369)
++..+|+++.... +.+...|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 3444555554442 4455666666666664 68876 899999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc-CH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DT-WAYRTFIDGLCKNGYIVEAVELFRTLRILKY 301 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 301 (369)
++..+.-.+.+...+..++..+.+.|++++|..+|+++.+. .| +. ..|..++..+.+.|++++|..+|++..+..
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 99886322335778888888889999999999999999885 34 33 478888888888999999999999998753
Q ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 302 ELDIRAYNCLIDG-LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 302 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|++..+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 3334444433332 335899999999999988752 33678899999999999999999999998754
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=4.2e-19 Score=142.85 Aligned_cols=253 Identities=10% Similarity=0.049 Sum_probs=166.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
++.....|++..|+..++...... |+ ......+.++|...|+++.|+..++. . -+|+..++..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHH
Confidence 345566788888888777665543 33 34556667788888888887775543 1 3456667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChH
Q 036461 104 GFCYANDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (369)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (369)
.+...++.++|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..++..+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 7777788888888888877665333 444556666777778888888877776 346667777777777788888
Q ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 183 RAEELFVSMESMGCKHNVFSY---SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
+|.+.++++.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887777663 332111 122233344567777777777777653 3366667777777777777777777777
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Q 036461 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVE-AVELFRTLRILK 300 (369)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 300 (369)
++.+.. +-++.++..++..+...|+.++ +..+++++.+..
T Consensus 225 ~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 225 EALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 766653 3356666667767777776654 456666666553
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.8e-19 Score=145.06 Aligned_cols=275 Identities=9% Similarity=0.018 Sum_probs=218.5
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
++.....|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44556789999999999887554 233 34556678999999999999987754 23567778888999999999
Q ss_pred ChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHH
Q 036461 145 KMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (369)
Q Consensus 145 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (369)
+.++|++.++.+...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 44667778888999999999999999987 467788999999999999999999999
Q ss_pred HHHHhCCCCCcHHhH---HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 224 SEMLSKGIKPDVVIY---NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...+..+..++...|++++|...++++....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999874 443211 22334444568999999999999987 45688899999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHH-HHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHH
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKI-AWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
+.++.++..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..-
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHH
Confidence 6688899999999999999876 57899998875 344332 23345555666666543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=2.3e-20 Score=153.58 Aligned_cols=279 Identities=11% Similarity=0.059 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++.++...|++++|+
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 3566666666 3345888888888888888888888864 246668888888888888888888
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766653 3456777888888888888888887774 256678888888888888888888888866
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 036461 161 VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 240 (369)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 35788888888888888888888877 257788888888888888888865544322 23333456
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--GYIVEAVELFRTLRILKYEL------DIRAYNCLI 312 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 312 (369)
++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|.. ..+++| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 7788888888888888888887654 45677777777777654 334444444432 122232 456788888
Q ss_pred HHHHcCCCHHHHHHHHH
Q 036461 313 DGLCKSGRLKIAWELFR 329 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~ 329 (369)
..|.+.++++.|....-
T Consensus 290 ~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHH
Confidence 88888888888766443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.9e-20 Score=153.02 Aligned_cols=283 Identities=12% Similarity=0.141 Sum_probs=140.7
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|+
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 6688999999999873 2359999999999999999999999653 477799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|+.+++..++. .++..+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877764 3457788899999999999999988885 36778999999999999999999999997
Q ss_pred HHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 6 36899999999999999999999998 2789999999999999999999665543 23455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHhcccCCccc------CHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS--GRLKIAWELFRSLPRGVLIA------DVVT 342 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 342 (369)
.....++..|.+.|.+++|..+++...... +-....|..+.-+|.+- ++..+.++.|..-+. ++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 556678999999999999999999999776 66778888888888764 445566666654433 333 4568
Q ss_pred HHHHHHHHHhcCchHHHHHHH
Q 036461 343 YNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~ 363 (369)
|.-+...|.+.++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 999999999999999987643
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=1.7e-18 Score=133.38 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=141.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|+++..+..+...+.+.|++++|+..|+++.+.+ |.++..+..+..++.+.|++++|+..|++..+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 6777888888888889999999999999888876 5678888888888888999999999998888763 4467
Q ss_pred HhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc
Q 036461 96 VTYNSLIHGFCYA-----------NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (369)
..+..+..++... |++++|+..|++..+..+ -+...+..+..++...|++++|+..|+++.+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7888888888888 777777777777776532 255667777777777777777777777777766 46
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
...+..+..++...|++++|...++++.+.. |.+...+..+..++...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6677777777777777777777777776664 4556667777777777777777777766543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-17 Score=144.55 Aligned_cols=330 Identities=12% Similarity=-0.050 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHc--------CCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccc-cchhhHHHHHHHHH
Q 036461 1 MEAAALFMKLRVF--------GCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK-PNTVTYTTIIDGLC 71 (369)
Q Consensus 1 ~~A~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 71 (369)
++|++.|++..+. ..+....+|+.+..+|...|++++|+..++++............ ....++..+..++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 3677777766442 12334568999999999999999999999988754211110011 23456666666665
Q ss_pred hc--CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 036461 72 KE--GFVDKAKELFLKMKDENINPNVVTYNSLIHGF---CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK---- 142 (369)
Q Consensus 72 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 142 (369)
.. +++++|++.|++..+.. |.++..+..+..++ ...++.++|+..+++.++.. +.+..++..+...+..
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC--
T ss_pred HHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhh
Confidence 54 57999999999998763 33566666655553 44677889999999988764 2355566655555544
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc---------
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN--------- 213 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 213 (369)
.+++++|.+.++...... +.+..++..+...+...|++++|...++++.+.. |.+..++..+..+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999998875 4577888999999999999999999999998875 55666777666655432
Q ss_pred ----------CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HH
Q 036461 214 ----------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW--AYRTFID-GL 280 (369)
Q Consensus 214 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~ 280 (369)
+..+.|...+++..+.++. +..++..+...+...|++++|...|++..+....+... .+..+.. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 2356788888888776433 56678889999999999999999999998864333221 2223332 23
Q ss_pred HhCCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCC
Q 036461 281 CKNGYIVEAVELFRTLRILK-----------------------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGV 335 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 335 (369)
...|++++|+..|++..+.. -+.+..+|..+..+|...|++++|++.|++.++.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 46889999999988876542 14466789999999999999999999999998864
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=5.3e-18 Score=130.61 Aligned_cols=113 Identities=11% Similarity=-0.041 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|+..+++..+..+. +...+..+..++...|++++|+..++++.+.. .++..+..+..++...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444433211 23333444444444444444444444444433 33344444444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+++.+.. |.+...+..+...+...|++++|+..|++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444332 22333444444444444444444444433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-17 Score=131.96 Aligned_cols=225 Identities=14% Similarity=0.095 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----hhhH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PN----VVSF 133 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 133 (369)
...+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566677777777777777777777776654 56667777777777777777777777776654211 11 3455
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
..+..++...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666666666666666666666543 232 23444455666666666655543 33444555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666555554322 34455555555555555555555555555442 223445555555555555555555555
Q ss_pred HHHHH
Q 036461 294 RTLRI 298 (369)
Q Consensus 294 ~~~~~ 298 (369)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.8e-17 Score=131.49 Aligned_cols=227 Identities=13% Similarity=0.056 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc--c----HHH
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP--N----AFV 167 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~ 167 (369)
....+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|...++.+.+..... + ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888899999999999999999998876 678889999999999999999999999988753211 1 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
+..+..++...|++++|...++++.... |+. ..+...|++++|...++++....+ .+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 8888999999999999999999998763 443 345666788999999999888632 255677888888899
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988764 3467888888999999999999999999988775 55688888889999999999999999
Q ss_pred HHhcccC
Q 036461 328 FRSLPRG 334 (369)
Q Consensus 328 ~~~~~~~ 334 (369)
++++.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=4.8e-17 Score=130.10 Aligned_cols=247 Identities=15% Similarity=0.034 Sum_probs=155.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIM 137 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 137 (369)
+..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667777778888888888888877753 33555777777788888888888888888776321111 12366777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.++...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++..... +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77777788888888777777764 3355667777777777777777777777776653 445556666662333344777
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHhCCCHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHG-VAAD------TWAYRTFIDGLCKNGYIV 287 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 287 (369)
+|...++++.+..+. +...+..+...+...++ +++|...++++.+.. ..|+ ...+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765322 34555556666666665 556666666655421 0122 134555666666666777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 036461 288 EAVELFRTLRILKYELDIRAYNCL 311 (369)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l 311 (369)
+|...++++.+.. |.+...+..+
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7776666666554 3344444333
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=4.2e-17 Score=130.49 Aligned_cols=251 Identities=10% Similarity=0.020 Sum_probs=201.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NV 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 95 (369)
|+..+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|++.++++.+.+..+ ..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHH
Confidence 44567778899999999999999999999876 4567799999999999999999999999998843111 13
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHH
Confidence 348899999999999999999999999874 3366789999999999999999999999998874 44677787777455
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC---hHHHHHHHHHHHhCC-CCCc------HHhHHHHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPD------VVIYNTLFIGL 245 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~ 245 (369)
...+++++|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...+
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55669999999999998875 4557778888888888888 888999999887642 1223 25777889999
Q ss_pred HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
...|++++|...++.+.+.. +.+......+...
T Consensus 232 ~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 99999999999999999864 3355555444433
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=1.1e-16 Score=133.07 Aligned_cols=233 Identities=12% Similarity=0.066 Sum_probs=161.7
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC-hHHHHHHHHHhHhCCCCCCHHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
..+|..+..++.+.|++++|+..++++...+ |.+..+|+.+..++...|+ +++|+..|++++... +-+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 4567777777778888888888888887765 4557777888888888885 888888888877753 336777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
|..+..++...|++++|+..|++++.... -+...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 77777888888888888888888777643 366677777777777888888888888877765 3366777777777777
Q ss_pred -cCChHHH-----HHHHHHHHhcCCCchHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcc
Q 036461 178 -TGRVNRA-----EELFVSMESMGCKHNVFSYSILINGYCKNK--EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 249 (369)
Q Consensus 178 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (369)
.|..++| +..+++..... +.+...|..+..++...| ++++|+..+.++ +. .+.+...+..++.+|...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 4554666 46677766654 445666777777776666 567777777666 32 2234556666666666653
Q ss_pred ---------cHHHHHHHHHHH-HHc
Q 036461 250 ---------QVERAFKLFDEM-QRH 264 (369)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~ 264 (369)
..++|..+++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 246667777666 443
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=1.6e-15 Score=121.34 Aligned_cols=225 Identities=14% Similarity=0.032 Sum_probs=173.3
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSF 133 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (369)
-++.++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45677888888888888888888888888873 356777778888888 888888888888888765 66777
Q ss_pred HHHHHHHHh----CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHH
Q 036461 134 NVIMNELCK----NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSI 205 (369)
Q Consensus 134 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (369)
..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 778888888 888888888888888764 66677778888888 888888888888887764 4556666
Q ss_pred HHHHHhh----cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cccHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 036461 206 LINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (369)
Q Consensus 206 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (369)
+...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 788888888888887763 45666677777777 788888888888777754 255667777
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHcC
Q 036461 278 DGLCK----NGYIVEAVELFRTLRILK 300 (369)
Q Consensus 278 ~~~~~----~g~~~~a~~~~~~~~~~~ 300 (369)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777664
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=1.4e-16 Score=132.33 Aligned_cols=248 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
...|..+..++...|++++|++.+++++... +.+...|+.+..++...|+ +++|+..|++++..... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567777777888888888888888887753 3367777888888888886 88888888888776433 6677777888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh-cCChH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK-NKEIE 217 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 217 (369)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.... +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888775 3467777778888888888888888888887765 5567777777777777 55546
Q ss_pred HH-----HHHHHHHHhCCCCCcHHhHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC------
Q 036461 218 GA-----LSLYSEMLSKGIKPDVVIYNTLFIGLFEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG------ 284 (369)
Q Consensus 218 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 284 (369)
+| +..+++.+...+. +...|..+...+...| ++++|...+..+ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4667676665433 4556666666666655 466777766666 32 2345566666666666653
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 036461 285 ---YIVEAVELFRTL-RILKYELDIRAYNCLIDGL 315 (369)
Q Consensus 285 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 315 (369)
..++|..+|+++ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 246677777776 4443 33444555444443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=1.1e-16 Score=137.21 Aligned_cols=330 Identities=12% Similarity=-0.020 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCh---hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHT---IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG---- 74 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 74 (369)
+|+++|++..+.| ++.++..+...+...|+. ++|+..|++..+ . ++..+..+...+...+
T Consensus 21 ~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---------~-~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 21 TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---------T-SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---------C-CHHHHHHHHHHHHhCCCCCC
Confidence 5777777777665 344555566666667777 777777777764 1 4556666666455444
Q ss_pred -ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 75 -FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW---NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 75 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
++++|+..|++..+.|.+ ..+..|...|...+.. .++...+......| +......+...|...+.++++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 667788888877775532 2555566565554432 23344444443333 2334444555555555433333
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc----CChHHHHHHH
Q 036461 151 RLLELMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLY 223 (369)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 223 (369)
.....+.+.-...++..+..+..+|...| +.++|++.|++....+ +++...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33222221111112225555666666666 6666666666666665 34444444455555433 5666666666
Q ss_pred HHHHhCCCCCcHHhHHHHHHH-H--HhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC-----CHHHHHHHHHH
Q 036461 224 SEMLSKGIKPDVVIYNTLFIG-L--FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-----YIVEAVELFRT 295 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~ 295 (369)
++.. .| +...+..+... + ...+++++|..+|++..+.| +......+...|. .| ++++|...|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 6665 22 33444444444 2 34566666666666666554 4455555555555 33 66666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHHHHh
Q 036461 296 LRILKYELDIRAYNCLIDGLCK----SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLFLDM 366 (369)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 366 (369)
.. +.++.....|...|.. ..++++|...|++..+.|. ......|...|.. ..++++|..+|+..
T Consensus 313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 55 2345555555555554 2366666666666665442 2333444444443 23566666665543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.9e-15 Score=120.91 Aligned_cols=226 Identities=13% Similarity=0.021 Sum_probs=199.3
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh----cCChHHHHHHHHHhHhCCC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENI 91 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 91 (369)
+.++.++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|+..|++..+.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 3467889999999999999999999999998743 45788889999999 999999999999999875
Q ss_pred CCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCc
Q 036461 92 NPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEASRLLELMIQIGVRP 163 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 163 (369)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 78889999999999 999999999999999875 67888899999999 999999999999999976
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCcH
Q 036461 164 NAFVYNTLMDGFCL----TGRVNRAEELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDV 235 (369)
Q Consensus 164 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 235 (369)
+...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence 56677788888888 999999999999998874 45677888889999 999999999999999874 36
Q ss_pred HhHHHHHHHHHh----cccHHHHHHHHHHHHHcC
Q 036461 236 VIYNTLFIGLFE----IHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 236 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 265 (369)
..+..+...|.. .+++++|...++...+.+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677888888988 999999999999998875
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=5.5e-16 Score=122.48 Aligned_cols=201 Identities=14% Similarity=0.025 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
...+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4455555555566666666666666555432 2345555555556666666666666666655542 2244455555556
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
+...|++++|...++.+.+.+..| +...+..+..++...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655521122 34455555666666666666666666665543 3345555666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
|...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666655432 24455555666666666666666666666554
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=4.2e-17 Score=130.66 Aligned_cols=247 Identities=10% Similarity=-0.014 Sum_probs=111.8
Q ss_pred hcCChHHHHHHHHHhHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhH
Q 036461 72 KEGFVDKAKELFLKMKDENI---NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDE 148 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (369)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34555555555555554321 1123444555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
|...++.+.+.. +.+..++..+..++...|++++|...++++.... |
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~------------------------------ 142 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--P------------------------------ 142 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C------------------------------
Confidence 555555555442 2234444444445555555555555555444432 2
Q ss_pred CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCH
Q 036461 229 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE---LDI 305 (369)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~ 305 (369)
+..........+...|++++|...+....... +++...+ .++..+...++.++|...++.+...... .+.
T Consensus 143 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 143 -----NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp -----TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 11122222222233455555555554444331 1222222 2344444455555555555554432100 013
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 306 RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 306 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
.++..++..|...|++++|...|+++.... |+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 455555666666666666666666665542 211 222234455556666655544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=8.6e-17 Score=126.34 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=128.7
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.....|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 344566777777777888888888888877755 4567777777777778888888888887776652 33667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 77777777777788888888777777653 3356666777777777777777777777777654 335666667777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
..|++++|...++++.... +.+..++..+..++...|++++|...++++.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777777776654 4455666677777777777777777777776653
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=7.1e-16 Score=119.51 Aligned_cols=202 Identities=13% Similarity=0.024 Sum_probs=118.2
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.+|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 77 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAE 77 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChH
Confidence 345566666666677777777777777666654 3445666666666666677777777666666542 33555
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYA-NDWNEAKCLFIEMMDQGVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 97 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
++..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 156 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 666666666666 66666666666666521112 23445555566666666666666666665543 2245555555566
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 175 FCLTGRVNRAEELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
+...|++++|...++++.... + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666666555443 2 3444445555555555556555555555554
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=9e-15 Score=134.72 Aligned_cols=220 Identities=12% Similarity=0.159 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..+++++|.++.++. .++.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|+
T Consensus 1088 ~i~nldrAiE~Aerv------------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred HHhhHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC
Confidence 556677777776643 13566667777777777777777777543 256666667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
+++|.+.|...++.. ++......++.+|++.+++++...+ ++ .++...+..+...|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 777777776666543 2222223466666666666543322 21 23444555566666777777777777666
Q ss_pred HHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH
Q 036461 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (369)
+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..++
T Consensus 1221 A---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~ 1280 (1630)
T 1xi4_A 1221 V---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 1280 (1630)
T ss_pred h---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCH
Confidence 3 256666666666666666666666552 3344444444444444444444433221 1233
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
..+..++..|.+.|.+++|+.+++...
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=6.8e-15 Score=135.52 Aligned_cols=302 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
-++.--...+++|...|.+.+|+++++++.-.+.+| ..+...-+.++.+..+. +..+..++.++.... +
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~f----s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d-- 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF----SEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D-- 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc----cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c--
Confidence 345555677788889999999999999988543211 12344444454444333 233333333333211 0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------CCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ----------------------GVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
...+...+...|.+++|..+|++.... .+ -+..+|..+..++...|++++|+..|.
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111333333444444444444432100 00 123445555555555555555555553
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc
Q 036461 155 LMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 234 (369)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (369)
+. .+...|..++.++.+.|++++|.+++....+.. +++...+.++.+|.+.+++++...+ .+ .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCC
Confidence 32 244445555555555555555555555544432 2222222344555555544432222 11 123
Q ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 235 VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 334444555555555555555555542 244555555555555555555555442 23444444444
Q ss_pred HHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 315 LCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.-
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444433321 124445556666677777777777776553
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=2.3e-16 Score=135.10 Aligned_cols=313 Identities=13% Similarity=0.051 Sum_probs=214.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh---HHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV---DKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+...+.+.|++++|+++|++..+.+ ++..+..|...|...|+. ++|+..|++..+. ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence 36778889999999999999998754 455666777777778888 9999999998864 5666777
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCccHHHHHHHH
Q 036461 101 LIHGFCYAN-----DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD---EASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 101 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
+...+...+ ++++|+.+|++..+.|. ...+..+...|...+... .+.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777555554 78999999999998763 336777888887766543 4555555555554 344566778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC---ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-
Q 036461 173 DGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI- 248 (369)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 248 (369)
..|...+.++++......+...-...++..+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 888888866555544333322211233347888888999999 999999999999998744 555556677777655
Q ss_pred ---ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---
Q 036461 249 ---HQVERAFKLFDEMQRHGVAADTWAYRTFIDG-L--CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG--- 319 (369)
Q Consensus 249 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 319 (369)
+++++|..+|+... . -++..+..+... + ...+++++|...|++..+.+ +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 78999999999987 3 355667777776 4 56899999999999999866 6778888888887 55
Q ss_pred --CHHHHHHHHHhcccCCcccCHHHHHHHHHHHHh----cCchHHHHHHHHHhhc
Q 036461 320 --RLKIAWELFRSLPRGVLIADVVTYNIMIHALCA----DGKMDKARDLFLDMEA 368 (369)
Q Consensus 320 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 368 (369)
++++|...|++.. . .++..+..|...|.. ..++++|.++|++..+
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999998 4 367778888877776 3499999999987654
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=1e-16 Score=128.36 Aligned_cols=252 Identities=12% Similarity=-0.025 Sum_probs=172.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
+...|++++|+..|+++.+..+.. .+.+..++..++.++...|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 334577888888888888753100 12346777888888888888888888888887753 34677888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
|++++|...|+++.... +.+..++..+..++...|++++|...++.+.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888888887763 2356777788888888888888888888887764 33333334444556678888888888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (369)
....... +++...+. ++..+...++.++|...+.+........ +...+..+...+...|++++|...++.+.+..
T Consensus 168 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7776653 33444443 5666777777788888888776642211 14667778888888888888888888887753
Q ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 266 VAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
|+. +.....++...|++++|+..+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 223355666777888877765
No 52
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=153.65 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHh---CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKD---ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch------HHHHHHHHHH
Q 036461 137 MNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN------VFSYSILING 209 (369)
Q Consensus 137 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 209 (369)
+.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...+...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999888655443 344444444 2222332 3334445555
Q ss_pred HhhcC
Q 036461 210 YCKNK 214 (369)
Q Consensus 210 ~~~~~ 214 (369)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=154.05 Aligned_cols=119 Identities=12% Similarity=0.174 Sum_probs=109.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHc---CCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMAN---GNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
-..+|+++|.+|++.|++++|.++|+.|.+ .+ +.||..+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 445899999999999999999999988764 34 689999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 036461 95 VVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK 142 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (369)
..||+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999999999998 57899999999999999999999988765544
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=3.7e-15 Score=117.72 Aligned_cols=201 Identities=12% Similarity=-0.017 Sum_probs=127.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 036461 95 VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG 174 (369)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (369)
...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666777777777777777777776653 2355666667777777777777777777776654 3355666666677
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 175 FCLTGRVNRAEELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
+...|++++|.+.++++...+. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665211 234555666666666667777777766666664322 45555666666666666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665542 234555556666666666666666666666654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=5.2e-17 Score=137.73 Aligned_cols=300 Identities=15% Similarity=0.082 Sum_probs=216.4
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhC--
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDE-- 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 89 (369)
++....+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999865 233 357888999999999999999999987542
Q ss_pred --CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCC----------------
Q 036461 90 --NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGK---------------- 145 (369)
Q Consensus 90 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~---------------- 145 (369)
+.+ ....++..+...+...|++++|...+++....... ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 111 12557788889999999999999999888653110 11 3367778888888899
Q ss_pred ----hhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC---chHHHHHHHHHHHh
Q 036461 146 ----MDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--CK---HNVFSYSILINGYC 211 (369)
Q Consensus 146 ----~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~ 211 (369)
+++|...++...+. +. +....++..+...+...|++++|...+++..... .. ....++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88888888876643 11 1224567778888899999999999988876431 01 11236778888888
Q ss_pred hcCChHHHHHHHHHHHhCC----CCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHH
Q 036461 212 KNKEIEGALSLYSEMLSKG----IKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-AD----TWAYRTFIDGLC 281 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~ 281 (369)
..|++++|...+++..... ..+ ...++..+...+...|++++|...++...+.... .+ ...+..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999988877531 111 1456777888888899999999888887653111 11 456777888888
Q ss_pred hCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCCHH
Q 036461 282 KNGYIVEAVELFRTLRIL----KY-ELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 322 (369)
..|++++|...+++..+. +. +....++..+...+...|+..
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 899999999988887643 11 112445666777777666653
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=5.4e-15 Score=114.47 Aligned_cols=166 Identities=10% Similarity=-0.026 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
++..+..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455555555555555555555555554431 2234445555555555555555555555554432 123334444444
Q ss_pred HHHhC-CChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 139 ELCKN-GKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 139 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 44444 44444444444444411111 12333334444444444444444444443332 22233333333333333333
Q ss_pred HHHHHHHHHHH
Q 036461 217 EGALSLYSEML 227 (369)
Q Consensus 217 ~~a~~~~~~~~ 227 (369)
++|...++++.
T Consensus 164 ~~A~~~~~~~~ 174 (225)
T 2vq2_A 164 GDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=4.1e-16 Score=122.41 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE 139 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (369)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555555666666666666555532 2345555555555555555555555555555442 1234444444555
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (369)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544433 2233444444444444444444444444444332 22333333344444444444444
Q ss_pred HHHHHHHHh
Q 036461 220 LSLYSEMLS 228 (369)
Q Consensus 220 ~~~~~~~~~ 228 (369)
...++++.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=2e-16 Score=134.42 Aligned_cols=273 Identities=16% Similarity=0.107 Sum_probs=156.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----G-VQPNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 130 (369)
...+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++.... + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 44555667777788888888888888776522 232 45677777777888888888888777543 1 11233
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIG-----VRPNAFVYNTLMDGFCLTGR-----------------VNRAEELF 188 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 188 (369)
.++..+...+...|++++|...++++.+.. .+....++..+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 456667777777777777777777766541 12234456666677777777 66776666
Q ss_pred HHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-Cc----HHhHHHHHHHHHhcccHHHHHHHH
Q 036461 189 VSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-PD----VVIYNTLFIGLFEIHQVERAFKLF 258 (369)
Q Consensus 189 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 258 (369)
++.... +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 10 112235555666666666666666666666553110 01 114555556666666666666666
Q ss_pred HHHHHcCCC-c----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 036461 259 DEMQRHGVA-A----DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY-----ELDIRAYNCLIDGLCKSGRLKIAWELF 328 (369)
Q Consensus 259 ~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 328 (369)
++..+.... . ....+..+...+...|++++|...+++...... .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 655442110 0 133445555556666666666666665543210 011234455555555666666666666
Q ss_pred Hhccc
Q 036461 329 RSLPR 333 (369)
Q Consensus 329 ~~~~~ 333 (369)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.8e-16 Score=132.41 Aligned_cols=303 Identities=14% Similarity=0.064 Sum_probs=214.2
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP 128 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 128 (369)
.+....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456667788889999999999999999998763 223 356788889999999999999999987543 1111
Q ss_pred -ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCC--------------------hH
Q 036461 129 -NVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VN 182 (369)
Q Consensus 129 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 182 (369)
...++..+...+...|++++|...++...+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2446777888889999999999999988876211 11 3467778888888999 88
Q ss_pred HHHHHHHHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCc----HHhHHHHHHHHHhcccHH
Q 036461 183 RAEELFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPD----VVIYNTLFIGLFEIHQVE 252 (369)
Q Consensus 183 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 252 (369)
+|...+.+.... +. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876542 11 12234677788888888999999998888876411 111 236777788888889999
Q ss_pred HHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHH
Q 036461 253 RAFKLFDEMQRHGVA-AD----TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 253 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~ 322 (369)
+|...+++..+.... .+ ..++..+...+...|++++|...+++....... . ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 998888887653111 11 446677788888889999998888887654211 1 1456777888888888888
Q ss_pred HHHHHHHhcccCCcccC-----HHHHHHHHHHHHhcCchHHHH
Q 036461 323 IAWELFRSLPRGVLIAD-----VVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 360 (369)
+|...+++..+...... ..++..+..++...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 88888888887532222 234555556666666655443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=1.3e-16 Score=135.65 Aligned_cols=273 Identities=14% Similarity=0.083 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch----hhHHHHHHHHHhcCChHHHHHHHHHhHhC----C-
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT----VTYTTIIDGLCKEGFVDKAKELFLKMKDE----N- 90 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~- 90 (369)
..+..+...+...|++++|+..|+++.+.. +.+. .++..+..++...|++++|+..+++..+. +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 345667788899999999999999999875 2333 57889999999999999999999988653 1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhCCC-----------------hhH
Q 036461 91 INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----G-VQPNVVSFNVIMNELCKNGK-----------------MDE 148 (369)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~ 148 (369)
.+....++..+...|...|++++|...+++.... + .+....++..+...+...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 1224567888999999999999999999988654 1 11234477788889999999 999
Q ss_pred HHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C--chHHHHHHHHHHHhhcCChHH
Q 036461 149 ASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---K--HNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 149 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~ 218 (369)
|...+++..+. +. +....++..+...+...|++++|...+++...... . ....++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99998887653 11 22345778889999999999999999998865420 1 112377888999999999999
Q ss_pred HHHHHHHHHhCCC--C---CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHHhCCCHHH
Q 036461 219 ALSLYSEMLSKGI--K---PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG-----VAADTWAYRTFIDGLCKNGYIVE 288 (369)
Q Consensus 219 a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 288 (369)
|...+++...... . ....++..+...+...|++++|...+++..+.. .......+..+..+|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998876411 0 124577888999999999999999999887531 11124477788999999999999
Q ss_pred HHHHHHHHHHc
Q 036461 289 AVELFRTLRIL 299 (369)
Q Consensus 289 a~~~~~~~~~~ 299 (369)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=4.1e-15 Score=125.10 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=212.5
Q ss_pred HHHhcCChHHHHHHHHHhHhC--CCCCC--HHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhcCCCCChh
Q 036461 69 GLCKEGFVDKAKELFLKMKDE--NINPN--VVTYNSLIHG--FCYANDWNEAK-----------CLFIEMMDQGVQPNVV 131 (369)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~ 131 (369)
.+.+.+++++|..+++++.+. .+..+ ...|..++.. ..-.+.++.+. ..++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345689999999999998653 22223 3333443322 22233444444 6666664431 1112
Q ss_pred h------HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--
Q 036461 132 S------FNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--C-- 196 (369)
Q Consensus 132 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-- 196 (369)
. +......+...|++++|...++...+. +.++ ...++..+...+...|++++|...+.+..... .
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 223566788899999999999999874 2122 35678889999999999999999999886531 1
Q ss_pred --CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC----CC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----C
Q 036461 197 --KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI----KP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----G 265 (369)
Q Consensus 197 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 265 (369)
+....++..+..+|...|++++|...+.+..+... .+ ...++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 12245788899999999999999999999876411 11 1247888999999999999999999998762 2
Q ss_pred C-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHhcccCCcc
Q 036461 266 V-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK----YELDIRAYNCLIDGLCKSGR---LKIAWELFRSLPRGVLI 337 (369)
Q Consensus 266 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~ 337 (369)
. +....++..+..++...|++++|...+++..... -+.....+..+...+...|+ +++|+.++++... .+
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~ 336 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YA 336 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HH
Confidence 3 4446778899999999999999999999987542 12223345678888899998 8888888888732 22
Q ss_pred cCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 338 ADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.....+..+...|...|++++|.+.+++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334577789999999999999999998865
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=8.3e-16 Score=126.69 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQ-PNV 130 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 130 (369)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445555666677777777777777766642 112 245566666677777777777777665432 101 113
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCC--------------------hHHHH
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VNRAE 185 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 185 (369)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34455555555666666666666555443100 01 2244444455555555 44444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+.+++..... ...+. .....++..+...+...|++++|...++...+.
T Consensus 164 ~~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 164 DLYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444432110 00000 001223444555555555555555555554431
Q ss_pred C----C-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 265 G----V-AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 265 ~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
. . ......+..+...+...|++++|...+++....... . ...++..+...+...|++++|...++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0 0 001224555556666666666666666665432100 0 1345556666666777777777766665432
Q ss_pred C-----cccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 335 V-----LIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 335 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
. ......++..+..++.+.|++++|.+.+++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 01113356666777777777777777777654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=5.2e-16 Score=127.91 Aligned_cols=238 Identities=16% Similarity=0.116 Sum_probs=155.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhC----
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDE---- 89 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (369)
+...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|++.+++....
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 34456677888999999999999999999865 223 467889999999999999999999987542
Q ss_pred CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCC------------------
Q 036461 90 NIN-PNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGK------------------ 145 (369)
Q Consensus 90 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------------------ 145 (369)
+.+ ....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 111 23567788899999999999999999987653111 12 3367778888888899
Q ss_pred --hhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHhhc
Q 036461 146 --MDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----C-KHNVFSYSILINGYCKN 213 (369)
Q Consensus 146 --~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~ 213 (369)
+++|...++...+. +. +....++..+...+...|++++|...+++..... . .....++..+...+...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 88888888776542 11 1123456666777777777777777777665321 0 00122455555566666
Q ss_pred CChHHHHHHHHHHHhCCCC-Cc----HHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 214 KEIEGALSLYSEMLSKGIK-PD----VVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
|++++|...+++....... .+ ..++..+...+...|++++|...++...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666666655432100 00 2234444444555555555555554443
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.6e-14 Score=117.47 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHcC-CCCCCcccccchhhHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCR-------TGHT-------IVALNLFEEMANG-NGEFGVVCKPNTVTYTTI 66 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 66 (369)
+|+.+|++.++.. |.++..|..++..+.. .|++ ++|..+|++.... . |.+...|..+
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~~ 105 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHHH
Confidence 5778999999874 7788899999888764 5886 8999999999984 4 4567789999
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCC-CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hC
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINP-NVV-TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC-KN 143 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 143 (369)
+..+...|++++|.++|+++.+. .| +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999985 34 344 78889999999999999999999998764 234444443333322 26
Q ss_pred CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCc--hHHHHHHHHHHHhhcCChHHHH
Q 036461 144 GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG-CKH--NVFSYSILINGYCKNKEIEGAL 220 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 220 (369)
|++++|..+|+...+.. +.+...+..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888777653 3356777777777777788888888888777652 233 3456677777777777777777
Q ss_pred HHHHHHHhC
Q 036461 221 SLYSEMLSK 229 (369)
Q Consensus 221 ~~~~~~~~~ 229 (369)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=5.1e-15 Score=124.48 Aligned_cols=300 Identities=9% Similarity=-0.041 Sum_probs=211.4
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHH--HHhcCChHHHH-----------HHHHHhHhCCCCCC
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDG--LCKEGFVDKAK-----------ELFLKMKDENINPN 94 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~ 94 (369)
.+.+.+++++|..+++++.+.-.... -.++...|..++.. ....++++.+. +.++.+... +.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~ 96 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQME--EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QAR 96 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCC
Confidence 35678999999999999876431100 01233333333322 22234444444 666666542 112
Q ss_pred HHh------HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC---
Q 036461 95 VVT------YNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIG--- 160 (369)
Q Consensus 95 ~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (369)
... +......+...|++++|...+++.... +..+ ...++..+..++...|++++|...+++..+..
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 222 223667788899999999999999764 1111 24578889999999999999999999887641
Q ss_pred ---CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---
Q 036461 161 ---VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--- 229 (369)
Q Consensus 161 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 229 (369)
.+....++..+..+|...|++++|...+++.... +. +....++..+..+|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1123457888899999999999999999988643 11 112347888999999999999999999999872
Q ss_pred -CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC
Q 036461 230 -GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILK 300 (369)
Q Consensus 230 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~ 300 (369)
+. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++...
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-- 334 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-- 334 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--
Confidence 22 334567889999999999999999999987753 112223335678888889999 7777777776521
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.+.....+..+...|...|++++|...+++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123445777899999999999999999988754
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.4e-14 Score=114.91 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=161.0
Q ss_pred CHhHHHHHHHHHHhc----CCh----hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHh-------cCCh------
Q 036461 18 NVFTYNTLINGLCRT----GHT----IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCK-------EGFV------ 76 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~------ 76 (369)
+...|...+....+. ++. ++|+..|+++.... |.++..|..++..+.. .|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 345677777665543 233 68889999999875 5678889888887763 4775
Q ss_pred -HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhCCChhHHHHHH
Q 036461 77 -DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-VV-SFNVIMNELCKNGKMDEASRLL 153 (369)
Q Consensus 77 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~ 153 (369)
++|..+|++....-.+.+...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888887312335668888888888888888888888888875 333 33 6777777777788888888888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC-C
Q 036461 154 ELMIQIGVRPNAFVYNTLMDGFC-LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-I 231 (369)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 231 (369)
+++.+.. +.+...|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8887764 234444443333322 2577777777777776553 4456666677777777777777777777777652 2
Q ss_pred CC--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 232 KP--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 232 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
+| ....|..++......|+.+.|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 2445666666666667777777777666654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=1.6e-14 Score=108.18 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=122.8
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.++.+|..+...+.+.|++++|+..|++..+.+ |.++.++..+..++.+.|++++|+..+....... +.+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHH
Confidence 356677778888888888888888888887765 4567777788888888888888888887776653 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+...+...++++.|...+.+..... +.+...+..+..++...|++++|++.|++..+.. +.+..++..+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH
Confidence 67777777777788888888777777653 3356667777777777777777777777777764 346667777777777
Q ss_pred hcCChHHHHHHHHHHHhc
Q 036461 177 LTGRVNRAEELFVSMESM 194 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~ 194 (369)
+.|++++|++.|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 777777777777777665
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=3e-15 Score=129.03 Aligned_cols=217 Identities=13% Similarity=0.012 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 036461 110 DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM-DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELF 188 (369)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (369)
.++++...++...... +.+...+..+..++...|++ ++|+..|+++.+.. +.+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666776665542 34667777788888888888 88888888888765 345777888888888888888888888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhhc---------CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------ccH
Q 036461 189 VSMESMGCKHNVFSYSILINGYCKN---------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--------HQV 251 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 251 (369)
+++.+.. |+...+..+..++... |++++|+..+++..+..+. +...+..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888764 5567777888888888 8888888888888876433 567777788888777 888
Q ss_pred HHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVA--ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFR 329 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 329 (369)
++|...+++..+.... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888775321 367778888888888888888888888887765 5566677778888888888888887776
Q ss_pred hcc
Q 036461 330 SLP 332 (369)
Q Consensus 330 ~~~ 332 (369)
++.
T Consensus 317 ~~~ 319 (474)
T 4abn_A 317 KTK 319 (474)
T ss_dssp TCC
T ss_pred ccc
Confidence 653
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=1.5e-14 Score=124.72 Aligned_cols=193 Identities=12% Similarity=-0.018 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRV-NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
+...+..+...+...|++ ++|++.|+++.+.. +.+..+|..+..+|...|++++|...|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344444444444444444 45555444444432 2334444444444444455555555544444432 2334444444
Q ss_pred HHHHhc---------ccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCC---
Q 036461 243 IGLFEI---------HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--------GYIVEAVELFRTLRILKYE--- 302 (369)
Q Consensus 243 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~--- 302 (369)
..+... |++++|...++++.+.. +.+...+..+..+|... |++++|...|+++.... +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 444444 44445554444444432 22344444444444444 44455555444444432 2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHH
Q 036461 303 LDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDL 362 (369)
Q Consensus 303 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (369)
.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244444444444444455555554444444321 11333444444444444444444443
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=2.3e-14 Score=107.33 Aligned_cols=167 Identities=16% Similarity=0.071 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 243 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (369)
++.+|..+...+...|++++|++.|++..+.. |.+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566667777777777777777777776654 455666667777777777777777777776665333 4555566666
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 036461 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKI 323 (369)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (369)
.+...++++.+...+....+.. +.+...+..+..++...|++++|+..|+++.+.. |.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777766653 3356666777777777777777777777777665 4566677777777777777777
Q ss_pred HHHHHHhcccC
Q 036461 324 AWELFRSLPRG 334 (369)
Q Consensus 324 a~~~~~~~~~~ 334 (369)
|...|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777654
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=2.2e-12 Score=114.41 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC---hHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF---VDKA 79 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a 79 (369)
-+..|++-+..+ |-|..+|..++..+.+.+.++.+..+|+++.... |.....|...+..-.+.++ ++.+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 345566666665 6788888888888888888888888888888765 5667788888888777777 8888
Q ss_pred HHHHHHhHhCC-CCCCHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CCC-hhhHHHHHHH
Q 036461 80 KELFLKMKDEN-INPNVVTYNSLIHGFCYANDW--------NEAKCLFIEMMDQ-GV-QPN-VVSFNVIMNE 139 (369)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~ 139 (369)
..+|++..... .+|++..|...+....+.++. +...++|+..+.. |. .++ ...|...+..
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 88888887752 136777777777655554432 2334566665542 44 333 3455555543
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.66 E-value=2.8e-13 Score=113.61 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=215.3
Q ss_pred ccchhhHHHHHHHH--HhcCChHHHHHHHHHhHhC--CCC--CCHHhHHHHHHH--HHhcCCHHHHH---------HHHH
Q 036461 57 KPNTVTYTTIIDGL--CKEGFVDKAKELFLKMKDE--NIN--PNVVTYNSLIHG--FCYANDWNEAK---------CLFI 119 (369)
Q Consensus 57 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 119 (369)
.|+..+-+.+-.-| ...+++++|.++++++.+. .+. ++...|..++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555555665555 7889999999999988653 222 233334444432 11112222222 5666
Q ss_pred HHHhcCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-----CccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036461 120 EMMDQGVQPNV----VSFNVIMNELCKNGKMDEASRLLELMIQIGV-----RPNAFVYNTLMDGFCLTGRVNRAEELFVS 190 (369)
Q Consensus 120 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (369)
.+.....+.+. ..+......+...|++++|...++.+.+... +....++..+...+...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65432111111 1233345567789999999999999886521 11356778899999999999999999998
Q ss_pred HHhc----CC-C-chHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CcHHhHHHHHHHHHhcccHHHHHHHHH
Q 036461 191 MESM----GC-K-HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFKLFD 259 (369)
Q Consensus 191 ~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (369)
.... +. . ....++..+..+|...|++++|...+.+..+. +.. ....++..+..++...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8643 11 1 12557888999999999999999999998763 111 123467888999999999999999999
Q ss_pred HHHH-----cCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 036461 260 EMQR-----HGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY----ELDIRAYNCLIDGLCKSGR---LKIAWEL 327 (369)
Q Consensus 260 ~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~ 327 (369)
+..+ .. +....++..+...+.+.|++++|...+++...... +.....+..+...+...|+ +++|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 43 33477888999999999999999999999986532 2223455666677778888 8888888
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
+++... .+.....+..+...|...|++++|.+.|++..+
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887432 122345677889999999999999999988653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=4.5e-15 Score=121.01 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=116.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc------C
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-------GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI------G 160 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 160 (369)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4456666777777777777777777776652 11223345556666666666777766666666543 1
Q ss_pred -CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---
Q 036461 161 -VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM------GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--- 229 (369)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 229 (369)
.+....++..+...+...|++++|...++++... +. +....++..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223445555566666666666666666655432 11 112334444555555555555555555555442
Q ss_pred ---CCCC-cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Q 036461 230 ---GIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL-- 303 (369)
Q Consensus 230 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 303 (369)
+..| ...++..+...+...|++++|...++++.+.. ++.. + ....+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--------~------------------~~~~~~~ 237 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HERE--------F------------------GSVDDEN 237 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHH--------H------------------C------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhc--------C------------------CCCCcch
Confidence 1111 12234444444444444444444444444310 0000 0 00001
Q ss_pred -----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 304 -----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 304 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.++|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11112222223334445555555555555431 2245567777777778888888887777654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=5.6e-15 Score=120.42 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=132.6
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----- 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 89 (369)
+.+..++..+...+...|++++|+.+|+++.+...... ...+....++..+..++...|++++|+..++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566889999999999999999999999987310000 002445678899999999999999999999998753
Q ss_pred -C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc-
Q 036461 90 -N-INPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ------GV-QPNVVSFNVIMNELCKNGKMDEASRLLELMIQI- 159 (369)
Q Consensus 90 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 159 (369)
+ .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|..+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1234567888889999999999999999988764 11 123445677778888888888888888887764
Q ss_pred -----C-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036461 160 -----G-VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMES 193 (369)
Q Consensus 160 -----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (369)
+ .+....++..+..++...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122345677777888888888888888887764
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=5.5e-12 Score=111.89 Aligned_cols=358 Identities=11% Similarity=-0.005 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh--
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV-- 76 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 76 (369)
.|+.+|+++... +|.+...|...+..-.+.|+ ++.+..+|++.....+ .+|++..|...+.-..+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhccccc
Confidence 578899999987 57888899999999999999 9999999999998641 138888898888766655543
Q ss_pred ------HHHHHHHHHhHh-CCC-CC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 77 ------DKAKELFLKMKD-ENI-NP-NVVTYNSLIHGFCY---------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 77 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
+...++|+.... -|. .+ +...|...+..... .++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344577877654 354 34 45677777765432 3346677778877764311111112211100
Q ss_pred ---H-----------------------HH-----------------------------------------------hCC-
Q 036461 139 ---E-----------------------LC-----------------------------------------------KNG- 144 (369)
Q Consensus 139 ---~-----------------------~~-----------------------------------------------~~~- 144 (369)
. +. ..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0 00 000
Q ss_pred ------ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 145 ------KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAE-ELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 145 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
..+.+..+|++++..- +-....|...+..+...|+.++|. ++|++..... |.+...|...+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHH
Confidence 0011223344444331 334555566666667778888886 8888887653 556666777788888889999
Q ss_pred HHHHHHHHHHhCCC---------CC------------cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 036461 218 GALSLYSEMLSKGI---------KP------------DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (369)
Q Consensus 218 ~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (369)
.|..+|+++..... .| ...+|...+....+.|+.+.|..+|.++.+.-.......|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999988876310 12 1235666777777788899999999988875112233444444
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--CHHHHHHHHHHHHhc
Q 036461 277 IDGLCKN-GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA--DVVTYNIMIHALCAD 353 (369)
Q Consensus 277 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 353 (369)
+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.+.....+ ....|...+..-.+.
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4333344 4589999999988876 35567777788888888899999999999988764321 345788888888888
Q ss_pred CchHHHHHHHHHhhc
Q 036461 354 GKMDKARDLFLDMEA 368 (369)
Q Consensus 354 g~~~~A~~~~~~m~~ 368 (369)
|+.+.+.++.+++.+
T Consensus 555 G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFE 569 (679)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=1.8e-13 Score=114.73 Aligned_cols=311 Identities=10% Similarity=-0.034 Sum_probs=215.9
Q ss_pred CcCHhHHHHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCcccccc--hhhHHHHHHH--HHhcCChHHHH---------
Q 036461 16 EPNVFTYNTLINGL--CRTGHTIVALNLFEEMANGNGEFGVVCKPN--TVTYTTIIDG--LCKEGFVDKAK--------- 80 (369)
Q Consensus 16 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~a~--------- 80 (369)
.|+..+-+.+-..| ...+++++|..+++++.+.... ...| ...|..++.. ..-.+....+.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 46666666666666 8899999999999988664311 1122 3333333332 11122233333
Q ss_pred HHHHHhHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhCCChhHHHH
Q 036461 81 ELFLKMKDENINPNV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQGV-QP----NVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
+.++.+.....+.+. ..+......+...|++++|...|++...... .+ ...++..+..++...|+++.|..
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 666665432111111 1233455667889999999999999876411 12 24467888899999999999999
Q ss_pred HHHHHHHcC----C-C-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhhcCChHHHH
Q 036461 152 LLELMIQIG----V-R-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCK-HNVFSYSILINGYCKNKEIEGAL 220 (369)
Q Consensus 152 ~~~~~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 220 (369)
.+++..+.. . . ....++..+..+|...|++++|.+.+.+.... +.+ ....++..+..+|...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 999887641 1 1 13557788999999999999999999988653 111 12456788999999999999999
Q ss_pred HHHHHHHh-----CCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHHhCCC---HHH
Q 036461 221 SLYSEMLS-----KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHG----VAADTWAYRTFIDGLCKNGY---IVE 288 (369)
Q Consensus 221 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~ 288 (369)
..+++..+ ..+. ...++..+...+...|++++|...+++..+.. .+.....+..+...+...++ +.+
T Consensus 243 ~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999987 4333 36778889999999999999999999988642 12223456666677778888 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
|+..++... ..+.....+..+...|...|++++|...|++..+
T Consensus 322 al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777632 1122345667889999999999999999998764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=1.6e-12 Score=108.79 Aligned_cols=299 Identities=13% Similarity=0.012 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCh----h
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PNV----V 131 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~ 131 (369)
.........+...|++++|...+++........+.. +++.+...+...|++++|...+++....... ++. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344555667778999999999999987753222222 4566778888899999999999988653111 111 2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--c--hH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQI----GVR--P-NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--H--NV 200 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 200 (369)
++..+...+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556777888999999999999888764 211 2 3445667788889999999999999988654311 1 23
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--HHhHH----HHHHHHHhcccHHHHHHHHHHHHHcCCCc---CHH
Q 036461 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYN----TLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTW 271 (369)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 271 (369)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788888899999999999998875421111 11111 23344678899999999988876543211 123
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRIL----KYELDI-RAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIM 346 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 346 (369)
.+..+...+...|++++|...++..... +.+++. .++..+..++...|+.++|...+++...... . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 4567778888899999999998887643 211122 3566677788888999999999988876311 1 112
Q ss_pred HHHHHhcCchHHHHHHHHHhh
Q 036461 347 IHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 347 ~~~~~~~g~~~~A~~~~~~m~ 367 (369)
...+...| +....+++++.
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHH
T ss_pred HHHHHHcc--HHHHHHHHHHH
Confidence 23444444 45555555543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=3.2e-12 Score=107.03 Aligned_cols=269 Identities=11% Similarity=0.001 Sum_probs=151.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhCCChhHHHHHHHHHHHcCC---Cc--cHHHHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVV----SFNVIMNELCKNGKMDEASRLLELMIQIGV---RP--NAFVYN 169 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 169 (369)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... .+ ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566777777777777766543221211 344555666677777777777776654310 11 122345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC--c-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--C--cHHhH
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESM----GCK--H-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P--DVVIY 238 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~ 238 (369)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666677777777777777766432 111 2 2344555666677777777777777776653211 1 12345
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCc-C-HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAA-D-TWAYR----TFIDGLCKNGYIVEAVELFRTLRILKYEL---DIRAYN 309 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 309 (369)
..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 566666777777777777777665421111 1 11111 22234566777777777777665432111 122445
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcccC----CcccCH-HHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLPRG----VLIADV-VTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
.+...+...|++++|...+++.... +..++. ..+..+..++...|++++|...+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666777777777777777665432 111122 255556666777777777777766543
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=2.4e-13 Score=121.95 Aligned_cols=168 Identities=11% Similarity=0.051 Sum_probs=150.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
|-+..+|+.+..++.+.|++++|+..|++..+.+ |.+..++..+..+|.+.|++++|++.|++..+.. +-+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 5567799999999999999999999999999976 5568899999999999999999999999998863 3468
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
..|..+..++...|++++|++.|++.++... -+...|..+..++...|++++|+..|+++++.. +-+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHH
Confidence 8999999999999999999999999998743 367889999999999999999999999999885 44788899999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036461 176 CLTGRVNRAEELFVSMES 193 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~ 193 (369)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999988754
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=2.6e-13 Score=121.62 Aligned_cols=167 Identities=20% Similarity=0.076 Sum_probs=125.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 242 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (369)
-+..+++.+..++.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|+..|++.++.+.. +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 346677778888888888888888888877764 455677777888888888888888888887776433 566777777
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (369)
.++...|++++|+..|++.++.. +-+...+..+..+|...|++++|+..|+++.+.. +.+...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888777753 3356777777788888888888888888877765 456677777777888888888
Q ss_pred HHHHHHHhccc
Q 036461 323 IAWELFRSLPR 333 (369)
Q Consensus 323 ~a~~~~~~~~~ 333 (369)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777777665
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.4e-12 Score=101.18 Aligned_cols=208 Identities=11% Similarity=0.023 Sum_probs=158.8
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (369)
+.++..|......+...|++++|+..|++..+.. .+++...+..+..++...|++++|++.|++..+.. +.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchH
Confidence 3567889999999999999999999999999876 22778888889999999999999999999999863 3467
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc--cHH
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV-------VSFNVIMNELCKNGKMDEASRLLELMIQIGVRP--NAF 166 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 166 (369)
..|..+..++...|++++|...+++..+..+ .+. ..|..+...+...|++++|...|+.+.+.. +. +..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 154 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHH
Confidence 8899999999999999999999999988642 244 457778888999999999999999998864 33 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.+..+..++...| ...++.+...+ ..+...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7777777776544 34455555443 23333443333 33456789999999999987433 34444433
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=9.3e-13 Score=98.44 Aligned_cols=164 Identities=17% Similarity=0.148 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
..|..+...+...|++++|+..++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345556666666666666666666666544 3445566666666666666666666666665542 33555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
.+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 66666666666666666666665542 2244455555555666666666666666555543 234455555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 036461 180 RVNRAEELFVSMES 193 (369)
Q Consensus 180 ~~~~a~~~~~~~~~ 193 (369)
++++|...++.+..
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=2.2e-12 Score=100.08 Aligned_cols=210 Identities=12% Similarity=-0.029 Sum_probs=162.6
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 036461 57 KPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVI 136 (369)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (369)
+.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++.....+ .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3567889999999999999999999999998875436888888899999999999999999999998743 366788899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHH
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILI 207 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (369)
..++...|++++|...++...+.. +.+. ..+..+...+...|++++|++.|+++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999999875 3344 557888889999999999999999998874 44 467788888
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (369)
.++...| ...++++...+.. +...|.... ....+.+++|...+++..+.. +.+..+...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 8876544 3445555554322 344444333 344677899999999999864 234555544443
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=1.7e-12 Score=96.95 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 167 VYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
.+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555566666666555554432 33445555555555556666666666655555422 24445555555555
Q ss_pred hcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 036461 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+..++..++..+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5666666666666555542 2345555555566666666666666666655543 3345555556666666666666666
Q ss_pred HHHhccc
Q 036461 327 LFRSLPR 333 (369)
Q Consensus 327 ~~~~~~~ 333 (369)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=4.8e-13 Score=107.24 Aligned_cols=227 Identities=11% Similarity=-0.033 Sum_probs=162.7
Q ss_pred HhCCChhHHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCchHHHHHHH
Q 036461 141 CKNGKMDEASRLLELMIQI-------GVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM------G-CKHNVFSYSIL 206 (369)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 206 (369)
...|++++|...+++..+. ..+....++..+...+...|++++|...++++... + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777653 22345677888999999999999999999998754 2 13346678899
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC------CC-CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHc------C-CCcCHHH
Q 036461 207 INGYCKNKEIEGALSLYSEMLSK------GI-KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRH------G-VAADTWA 272 (369)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 272 (369)
...+...|++++|...+.++... .. +....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11 223567888999999999999999999998764 1 1223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHHcCCC------HHHHHHHHHhcccCCccc
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRIL-------KY-ELDIRAYNCLIDGLCKSGR------LKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 338 (369)
+..+..++...|++++|...++++... .. +.....+..+...+...+. +..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998764 11 1223344444444443333 34444444444332 223
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 339 DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
...++..+..+|...|++++|.++|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999998764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=2.2e-11 Score=98.06 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=155.9
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc--C-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCYA--N-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
+|.+++.+..+. .++....| .+ + +. + ++++|...|.+. ...|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466666666554 23222222 22 1 22 2 477777777765 335667888888888888
Q ss_pred HHHHc----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHHHhhc-CChHHHHHHH
Q 036461 155 LMIQI----GVRPN-AFVYNTLMDGFCLTGRVNRAEELFVSMESMGC---KH--NVFSYSILINGYCKN-KEIEGALSLY 223 (369)
Q Consensus 155 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~ 223 (369)
+..+. |.++. ..+++.+..+|...|++++|+..+++...... .+ ...++..+..+|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 77654 22222 46778888888888999988888888764310 11 134677888888886 9999999999
Q ss_pred HHHHhCCCCC-c----HHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhCCCHHHHHHH
Q 036461 224 SEMLSKGIKP-D----VVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT------WAYRTFIDGLCKNGYIVEAVEL 292 (369)
Q Consensus 224 ~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 292 (369)
++..+..... + ..++..+...+...|++++|...+++..+....... ..+..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8887642110 1 346778888888999999999999988875432221 2466777888889999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHH--cCCCHHHHHHHHHhcccC
Q 036461 293 FRTLRILKYELDI------RAYNCLIDGLC--KSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 293 ~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 334 (369)
|++..... |+. ..+..++.++. ..+++++|+..|+++...
T Consensus 222 ~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 222 LQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 98887542 221 23444556664 456788899998888764
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=1.4e-12 Score=104.50 Aligned_cols=234 Identities=13% Similarity=0.006 Sum_probs=160.9
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCC-cccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC------C-CCCCHHhHHHH
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------N-INPNVVTYNSL 101 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 101 (369)
...|++++|+..|++..+...... ...+....++..+..++...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 356777777777776665210000 002345778999999999999999999999998753 1 12345678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc------C-CCccHHH
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQ------G-VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI------G-VRPNAFV 167 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 167 (369)
..++...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888899999999999999999998875 1 2234667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHhhcCChHHH------HHHHHHHHhCCCCC
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMG--------CKHNVFSYSILINGYCKNKEIEGA------LSLYSEMLSKGIKP 233 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~ 233 (369)
+..+..++...|++++|...++++.... .......+..+...+...+....+ ...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8889999999999999999999987531 112223344444333333332222 222222111 1122
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988753
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=1.2e-11 Score=99.58 Aligned_cols=234 Identities=12% Similarity=0.023 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhC--C-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 113 EAKCLFIEMMDQGVQPNVVSFNVIMNELCKN--G-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
+|.+++.+..+. .+++...| .+ .+. + ++++|...|+.. +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 567777777665 23222223 22 232 2 488888888776 446778999999999999
Q ss_pred HHHhc----CCCc-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC---CC--cHHhHHHHHHHHHhc-ccHHHHHHHH
Q 036461 190 SMESM----GCKH-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGI---KP--DVVIYNTLFIGLFEI-HQVERAFKLF 258 (369)
Q Consensus 190 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~ 258 (369)
+.... +-++ ...+|..+..+|...|++++|+..+++..+... .+ ...++..+...|... |++++|+..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 88653 2122 256889999999999999999999999876411 11 135788889999996 9999999999
Q ss_pred HHHHHcCCCc-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCCHHHHHHH
Q 036461 259 DEMQRHGVAA-D----TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDI------RAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 259 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
++..+..... + ..++..+...+...|++++|+..|+++......... ..+..++.++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987642111 1 356788899999999999999999999986432221 1567788899999999999999
Q ss_pred HHhcccCCcc-cC---HHHHHHHHHHHH--hcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLI-AD---VVTYNIMIHALC--ADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~A~~~~~~m~ 367 (369)
|++..+.... ++ ...+..++.++. ..+++++|++.|+++.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9999874211 11 123445566664 4577999999887653
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=2.5e-10 Score=90.31 Aligned_cols=245 Identities=11% Similarity=0.047 Sum_probs=137.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 26 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
++-..-.|++..++.-..++.. .........+.+++...|++... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---------~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---------VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---------CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---------cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh
Confidence 3455566777777763322211 11122333445667777766531 11223333333333332
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCChHHH
Q 036461 106 CYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRA 184 (369)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 184 (369)
..+ |+..|+++...+ .++..++..+..++...|++++|++++...+..+. .-+...+..++..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 222 666677666554 34455555677777777777777777777765542 13556666777777777777777
Q ss_pred HHHHHHHHhcCCCc-----hHHHHHHHHHHH--hhcC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 185 EELFVSMESMGCKH-----NVFSYSILINGY--CKNK--EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 185 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
.+.++.+.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 7777777665 34 244444444442 2223 777777777777654 233222233333677777777777
Q ss_pred HHHHHHHHcC---------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 256 KLFDEMQRHG---------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 256 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
..++.+.+.. -+.++.++..++......|+ +|.++++++.+..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 7777654420 02345555455555555565 6677777777653
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=2.8e-11 Score=95.89 Aligned_cols=213 Identities=8% Similarity=-0.080 Sum_probs=139.4
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC-
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLKMKDENI- 91 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 91 (369)
+.++..+..+...+.+.|++++|+..|+++.... |.+ ...+..+..++.+.|++++|+..|+++.+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 4567788888889999999999999999999876 233 67888899999999999999999999987521
Q ss_pred -CCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 036461 92 -NPNVVTYNSLIHGFCY--------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVR 162 (369)
Q Consensus 92 -~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (369)
+.....+..+..++.. .|++++|...|++++...+. +......+. .+..+...
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~--- 146 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK--- 146 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH---
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH---
Confidence 1234567778888888 89999999999998876321 222221111 11111100
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhhc----------CChHHHHHHHHHHHhCC
Q 036461 163 PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--HNVFSYSILINGYCKN----------KEIEGALSLYSEMLSKG 230 (369)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 230 (369)
....+..+..++...|++++|+..|+.+...... .....+..+..+|... |++++|...++++.+..
T Consensus 147 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 147 -LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 1122455667777778888888888777665311 1344566666666655 77778888888777753
Q ss_pred CCCc--HHhHHHHHHHHHhcccHHHH
Q 036461 231 IKPD--VVIYNTLFIGLFEIHQVERA 254 (369)
Q Consensus 231 ~~~~--~~~~~~l~~~~~~~~~~~~a 254 (369)
+... ......+...+...++++.+
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 2211 22344444555555555443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=2.3e-10 Score=90.51 Aligned_cols=244 Identities=10% Similarity=0.025 Sum_probs=170.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCh
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKM 146 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (369)
++-..-.|++..++.-..++.. .. ....-..+.++|...|++... ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 4445567999998884433322 12 223334456888888877642 122334334444433 33322
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhhcCChHHHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSE 225 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (369)
++..+++..+.+ +++..++..+..++...|++++|++++.+....+. ..+...+...+..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677888777665 45566667888999999999999999999876652 25778888999999999999999999999
Q ss_pred HHhCCCCC-----cHHhHHHHHHHH--Hhcc--cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 226 MLSKGIKP-----DVVIYNTLFIGL--FEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 226 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9885 45 355666666663 3334 899999999998765 355333344444899999999999999977
Q ss_pred HHcC---------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 297 RILK---------YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 297 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
.+.. -+.++.++..++......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6431 14577777677777777787 888999999885
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.40 E-value=3.4e-11 Score=91.78 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHH----------------HHHHHHhcCChHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTT----------------IIDGLCKEGFVDKAKE 81 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~ 81 (369)
++..+......+.+.|++++|+..|+++...+ |.+...|.. +..++.+.|++++|+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666778889999999999999999876 334555555 4444455555555555
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.|++..+.. |.+...+..+..++...|++++|...|++.++.
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555544431 224444444444555555555555555554443
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.40 E-value=1.5e-09 Score=86.73 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc---CCh
Q 036461 111 WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG--KMDEASRLLELMIQIGVRPNAFVYNTLMDGF----CLT---GRV 181 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 181 (369)
.++|+.++++++...+. +..+|+.-..++...+ ++++++..++.++.... -+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35666666666655322 4445555555555555 66666666666666542 2444444433333 333 556
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH--HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc------HHH
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE--GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ------VER 253 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 253 (369)
++++.+++.+.... +.+..+|+.-..++.+.|.++ ++++.++++.+.++. +...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 66666666665554 445555555555555555555 666666666655433 44455444444444443 555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE-AVELFRTLRILK--YELDIRAYNCLIDGLCKSGRLKIAWELFRS 330 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 330 (369)
+++.+..++... +-|...|+.....+.+.|+... +..+..++...+ -+.++..+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 555555555443 2345555555555555554222 333444433321 122444555555555555555555555555
Q ss_pred ccc
Q 036461 331 LPR 333 (369)
Q Consensus 331 ~~~ 333 (369)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.40 E-value=1.5e-10 Score=88.40 Aligned_cols=176 Identities=11% Similarity=-0.023 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC----ChH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG----FVD 77 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 77 (369)
+|++.|++..+.| ++.++..+...+...+++++|+..|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 5777777777754 67777778888888888888888888877644 45667777777776 5 788
Q ss_pred HHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh----CCChhH
Q 036461 78 KAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQ-PNVVSFNVIMNELCK----NGKMDE 148 (369)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 148 (369)
+|++.|++..+.| ++..+..|...|.. .+++++|+.+|++..+.|.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888888877654 56667777777766 67788888888877766421 015566667777766 667777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 036461 149 ASRLLELMIQIGVRPNAFVYNTLMDGFCLT-G-----RVNRAEELFVSMESMG 195 (369)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 195 (369)
|..+|+...+.+ .+...+..+..+|... | ++++|..+|++..+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777777651 2333555566666543 2 6777777777776665
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=1.4e-11 Score=111.00 Aligned_cols=174 Identities=10% Similarity=-0.013 Sum_probs=147.7
Q ss_pred HhcCChhHHHHHHHHHH--------cCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHH
Q 036461 30 CRTGHTIVALNLFEEMA--------NGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 101 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (369)
...|++++|++.++++. +.. +.+...+..+..++...|++++|++.|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 78899999999999998 544 5567889999999999999999999999998763 4478899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 036461 102 IHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (369)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (369)
..++...|++++|...|++..+... -+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999998743 367788899999999999999 99999999876 44778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 182 NRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
++|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999998775 4556778778888766554
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=9.5e-11 Score=92.81 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=94.1
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhh
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ--PNVVS 132 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 132 (369)
.++..+..+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|++++|...|+++++..+. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345556666666666667777777766666542 212 455566666666666666666666666654211 11233
Q ss_pred HHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHH
Q 036461 133 FNVIMNELCK--------NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYS 204 (369)
Q Consensus 133 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (369)
+..+..++.. .|++++|...|+.+.+.... +......+. .+..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 4445555555 55566666666555554211 111111110 00000000 011134
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhc----------ccHHHHHHHHHHHHHc
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEI----------HQVERAFKLFDEMQRH 264 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 264 (369)
.+...|...|++++|+..|+++++..+.. ....+..+..++... |++++|...++.+.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45556666666666666666666542211 223445555555544 5556666666655553
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.38 E-value=3.7e-09 Score=91.18 Aligned_cols=342 Identities=11% Similarity=0.018 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH----hcCCh
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC----KEGFV 76 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 76 (369)
.|..+|++.+.. .|+...|...+....+.++ .+....+|+.+...-+. -+.+...|...+..+. ..++.
T Consensus 32 ~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 32 SLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp HHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred HHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHH
Confidence 578888888875 5799999999998888774 45677888887764210 1346678888887654 24678
Q ss_pred HHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 036461 77 DKAKELFLKMKDENINPNVVTYNSLIHGFCY-------------ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN 143 (369)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (369)
+.+..+|+++.......-...|......-.. .+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8999999999884222112233322221111 122333444444443210011333555544432221
Q ss_pred --CC-----hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCh
Q 036461 144 --GK-----MDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (369)
Q Consensus 144 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (369)
+- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... |.+...+... ....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----Hhhcch
Confidence 11 345678899988864 556788888888889999999999999999887 4444433322 221111
Q ss_pred HHHHHHHHHHHhCC---------C---CCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-C
Q 036461 217 EGALSLYSEMLSKG---------I---KPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK-N 283 (369)
Q Consensus 217 ~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 283 (369)
++. ++.+.+.- . ......|...+....+.++.+.|..+|.++ +. ...+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 111 22222210 0 111245666666666788899999999999 32 22344555433332222 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 284 GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 284 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
++.+.|..+|+...+.- +.++..+...+....+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+.+++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47999999999998753 34556677778888889999999999999843 5778888888888889999999988
Q ss_pred HHhh
Q 036461 364 LDME 367 (369)
Q Consensus 364 ~~m~ 367 (369)
++..
T Consensus 408 ~~~~ 411 (493)
T 2uy1_A 408 DQKM 411 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=1.9e-11 Score=110.12 Aligned_cols=184 Identities=9% Similarity=-0.047 Sum_probs=141.2
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 176 CLTGRVNRAEELFVSME--------SMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
...|++++|++.++++. ... +.+...+..+..++...|++++|+..|+++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999988887 443 456677888888888899999999999988886433 66788888888888
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.|++++|...|+++.+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998888764 3356778888888888999999 88998888776 56778888888899999999999999
Q ss_pred HHhcccCCcccC-HHHHHHHHHHHHhcCc--------hHHHHHHHHHh
Q 036461 328 FRSLPRGVLIAD-VVTYNIMIHALCADGK--------MDKARDLFLDM 366 (369)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~m 366 (369)
|+++.+. .|+ ...+..+..++...|+ +++|.+.++++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9988875 343 5567677777655443 55666655443
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.37 E-value=1.1e-10 Score=88.82 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 036461 171 LMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 246 (369)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (369)
+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+++++..+. +..++..+..++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4445555555555555555554443 334444555555555555555555555555544222 3344444444443
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=3.6e-09 Score=84.62 Aligned_cols=175 Identities=9% Similarity=-0.038 Sum_probs=111.0
Q ss_pred HhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH-
Q 036461 30 CRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGF- 105 (369)
Q Consensus 30 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~- 105 (369)
.+.|. .++|+.+++.++..+ |.+..+|+.-..++...+ +++++++.++.+.... |-+..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 34444 457888888888876 455677888777777777 8888888888887753 33556666544444
Q ss_pred ---Hhc---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 036461 106 ---CYA---NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD--EASRLLELMIQIGVRPNAFVYNTLMDGFCL 177 (369)
Q Consensus 106 ---~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (369)
... +++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+.+... .|...|+.....+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 444 5677777777777766433 6666666666666667666 77777777776653 355666655555555
Q ss_pred cCC------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 178 TGR------VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 178 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.+. ++++++.++.+.... +.|...|+.....+.+.|+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 554 555666665555544 4455555555555554444
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=1.2e-10 Score=81.77 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
+|..+...+...|++++|+.+++++.+.. +.+...+..++..+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45666666777777777777777766654 3445666666666667777777777777666542 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666666666543 224455555666666666666666666665543
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=3e-10 Score=86.72 Aligned_cols=176 Identities=15% Similarity=0.052 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC----CHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN----DWN 112 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 112 (369)
+|++.|++..+.+ ++..+..+...|...+++++|++.|++..+.| ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 3555555555533 45566666666666666666666666666543 45555555555555 4 566
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCChHH
Q 036461 113 EAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEASRLLELMIQIGVR-PNAFVYNTLMDGFCL----TGRVNR 183 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 183 (369)
+|..+|++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .++..+..|..+|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666665543 44455555555554 55666666666666555421 014445555555555 555666
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhhc-C-----ChHHHHHHHHHHHhCC
Q 036461 184 AEELFVSMESMGCKHNVFSYSILINGYCKN-K-----EIEGALSLYSEMLSKG 230 (369)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 230 (369)
|...|++.... +.+...+..+...|... | +.++|...|++..+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666665544 12233344444444332 1 5555555555555544
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=2e-11 Score=87.69 Aligned_cols=144 Identities=10% Similarity=0.001 Sum_probs=91.9
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHH
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 106 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (369)
..+...|++++|+..++...... +.++..+..+..+|.+.|++++|++.|++..+.. |.+..+|..+..+|.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455667777777777766643 3345566677777777777777777777776652 336677777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH-HHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 107 YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL-LELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
..|++++|+..|++.++..+ -+..++..+..++.+.|+++++.+. ++.+.+.. |-++.+|......+...|+
T Consensus 77 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 77777777777777776532 2456666677777777776655544 46666653 3355566655555555543
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=1.2e-10 Score=93.45 Aligned_cols=163 Identities=14% Similarity=0.003 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH-HHH
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNV-IMN 138 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 138 (369)
...+..+...+...|++++|+..|+++.... |.+...+..+..++.+.|++++|...++++.... |+...... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3444445555555555555555555554431 2244445555555555555555555555544332 22221111 112
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch--HHHHHHHHHHHhhcCCh
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN--VFSYSILINGYCKNKEI 216 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 216 (369)
.+...++.+.|...+++..+.. +.+...+..+...+...|++++|...+.++.+.. +.+ ...+..++..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCC
Confidence 2334444455555555555443 2344455555555555555555555555555442 111 34455555555555555
Q ss_pred HHHHHHHHHHH
Q 036461 217 EGALSLYSEML 227 (369)
Q Consensus 217 ~~a~~~~~~~~ 227 (369)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 55555554443
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=1.9e-10 Score=80.80 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 036461 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (369)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (369)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 444555555566666666666665554322 34445555555555556666666655555442 2234455555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 283 NGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 283 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
.|++++|...++++.... +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555443 33444555555555555555555555555443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.30 E-value=5.4e-11 Score=88.04 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+......+.+.|++++|+..|+++.+.+ |.+...+..+..++...|++++|+..++++.... |+...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHH
Confidence 44555666667777777777777666544 4456666777777777777777777776665532 23333222
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 036461 101 LIHG-FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLT 178 (369)
Q Consensus 101 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 178 (369)
+... +...+....|...+++..+.. +.+...+..+..++...|++++|...|+.+.+....+ +...+..+..++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2111 111122223455555555542 2244555555666666666666666666665543221 234555555666666
Q ss_pred CChHHHHHHHHHHH
Q 036461 179 GRVNRAEELFVSME 192 (369)
Q Consensus 179 ~~~~~a~~~~~~~~ 192 (369)
|+.++|...|++..
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666555543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=3.3e-11 Score=86.51 Aligned_cols=141 Identities=13% Similarity=-0.007 Sum_probs=64.9
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHH
Q 036461 210 YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEA 289 (369)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 289 (369)
+...|++++|+..+........ .+...+..+...|...|++++|+..+++.++.. +-+...+..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555554443211 122233444555555555555555555555442 22444555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHhcccCCcccCHHHHHHHHHHHHhcC
Q 036461 290 VELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL-FRSLPRGVLIADVVTYNIMIHALCADG 354 (369)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (369)
...|+++.+.. |.+..++..+...|.+.|++++|... ++++.+.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555443 33444555555555555555443332 34444421 113444444444444444
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.29 E-value=4e-09 Score=90.93 Aligned_cols=313 Identities=10% Similarity=-0.060 Sum_probs=192.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC-hHHHHHHHHHhHhC-CC-CCCHHhHHHHHHHHH---
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDE-NI-NPNVVTYNSLIHGFC--- 106 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~--- 106 (369)
|+++.+..+|++....- |+...|...+.-..+.++ .+....+|+..... |. +.+...|...+..+.
T Consensus 28 ~~~e~~~~iferal~~~--------ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--------YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--------CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 88999999999999853 799999998888777663 46677888887763 42 346788888887654
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-------------CCChhHHHHHHHHHHHcCCCccHHHHHHHH
Q 036461 107 -YANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK-------------NGKMDEASRLLELMIQIGVRPNAFVYNTLM 172 (369)
Q Consensus 107 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (369)
..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~ 179 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346788999999999874211111122222111100 112223344444443210011333555555
Q ss_pred HHHHhc--CC-----hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 036461 173 DGFCLT--GR-----VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 245 (369)
Q Consensus 173 ~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (369)
..-... |- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|
T Consensus 180 ~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y 252 (493)
T 2uy1_A 180 DLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YY 252 (493)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HH
T ss_pred HHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HH
Confidence 442221 11 345678898888764 566788888888889999999999999999987 32332222 22
Q ss_pred HhcccHHHHHHHHHHHHHcC------------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 246 FEIHQVERAFKLFDEMQRHG------------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
......++. ++.+.+.- .......|...+....+.++.+.|..+|+++ ... +.+..+|...+.
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~ 327 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAF 327 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHH
Confidence 221111111 22222110 0111345666777777788899999999999 321 234455543333
Q ss_pred HHHc-CCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 314 GLCK-SGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 314 ~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
.-.. .++.+.|..+|+...+.. +-++..|...+....+.|+.+.|+.+|+++
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 336999999999988752 224566777888888899999999999875
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=2.8e-10 Score=91.25 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=99.3
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHH
Q 036461 162 RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNT 240 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 240 (369)
+.+...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++++.... |+.. ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344555566666677777777777777776654 4455666666777777777777777777666543 2322 2222
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD--IRAYNCLIDGLCKS 318 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 318 (369)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|+++.... +.+ ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHc
Confidence 2223445555666666666666553 3356666666666667777777777776666653 212 45566666666666
Q ss_pred CCHHHHHHHHHhc
Q 036461 319 GRLKIAWELFRSL 331 (369)
Q Consensus 319 g~~~~a~~~~~~~ 331 (369)
|+.++|...|++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 6666666666554
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=4.1e-11 Score=88.69 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc-CHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA-DVVTYNIMIHALCADGKMDKARDLFLDM 366 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 366 (369)
|...+++..... |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++.
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 444555554443 3345555555555555555555555555555442221 2334555555555555555555555543
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=1e-09 Score=84.63 Aligned_cols=188 Identities=10% Similarity=-0.058 Sum_probs=129.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH--
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-- 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 95 (369)
++..+..+...+.+.|++++|+..|+++....+. .+.....+..++.++.+.|++++|+..|+++.+.... +.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcH
Confidence 4566777888899999999999999999986511 0112467888999999999999999999999875221 22
Q ss_pred -HhHHHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHH
Q 036461 96 -VTYNSLIHGFCY------------------ANDWNEAKCLFIEMMDQGVQPNV-VSFNVIMNELCKNGKMDEASRLLEL 155 (369)
Q Consensus 96 -~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (369)
..+..+..++.. .|++++|...|+++++.. |+. ..+...... ..+...
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHH
Confidence 244455555543 467788888888887653 322 222211110 000000
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 156 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
+ ......+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|+.++|...++.+...++
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0 1112356778889999999999999998763 222 35678889999999999999999998888643
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=2.9e-10 Score=100.66 Aligned_cols=154 Identities=10% Similarity=-0.012 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCH
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 111 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (369)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 478899999999998876 5568899999999999999999999999998863 44788899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CChHHHHHHH
Q 036461 112 NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT---GRVNRAEELF 188 (369)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 188 (369)
++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 3367788999999999999999999999999875 44678888899999999 9999999999
Q ss_pred HHHHhcC
Q 036461 189 VSMESMG 195 (369)
Q Consensus 189 ~~~~~~~ 195 (369)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998775
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=7.3e-10 Score=85.51 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcH--HhHH
Q 036461 164 NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VIYN 239 (369)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 239 (369)
+...+..+...+...|++++|+..|+++..... +.....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999987631 112457788889999999999999999999986433211 2344
Q ss_pred HHHHHHHh------------------cccHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 240 TLFIGLFE------------------IHQVERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 240 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
.+..++.. .|++++|...|+.+++.. |+ .......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 45555543 345666666666655542 22 1111100000 0000000
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCccc--CHHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 301 YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIA--DVVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
......+...|.+.|++++|...|+++++..... ....+..+..++.+.|++++|++.++.+..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 0011234556777777888877777776642111 124566777777778888888777776643
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=4.9e-10 Score=90.89 Aligned_cols=225 Identities=9% Similarity=-0.033 Sum_probs=139.2
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
.|++++|.+++++..+.. + . .+.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777766531 1 1 0222 46777777777654 346677888888888
Q ss_pred HHHHHHHcCC----C-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCc--hHHHHHHHHHHHhhcCChHHHHH
Q 036461 152 LLELMIQIGV----R-PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG---CKH--NVFSYSILINGYCKNKEIEGALS 221 (369)
Q Consensus 152 ~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~ 221 (369)
.|.+..+... . .-..++..+..+|...|++++|+..+++..... ..+ ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887765411 1 114467777888888888888888888775431 012 13466777777777 88888888
Q ss_pred HHHHHHhCCCC---C--cHHhHHHHHHHHHhcccHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHhCCCHHHHHH
Q 036461 222 LYSEMLSKGIK---P--DVVIYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAAD-TWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 222 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
.|++....... + ...++..+...+...|++++|+..+++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877763111 0 1345667777788888888888888777653 11111 1245555666677788888888
Q ss_pred HHHHHHHcCCCC-C---HHHHHHHHHHHHcCCCHHHHHH
Q 036461 292 LFRTLRILKYEL-D---IRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 292 ~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
.|++.. ..... + ......++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888777 42110 1 12233444444 4566655555
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=6.1e-10 Score=90.36 Aligned_cols=227 Identities=11% Similarity=0.003 Sum_probs=141.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-------~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-------KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHc-------ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 3578889999999887643 111 0 11146677777776654 345666777
Q ss_pred HHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCC
Q 036461 111 WNEAKCLFIEMMDQGV---QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVRP-NAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~ 180 (369)
+++|...|.+...... .+ -..+|..+..+|...|++++|+..|++..+. |-+. ...++..+..+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 7777777776654310 00 1335666777777788888888888776543 2111 13566677777777 88
Q ss_pred hHHHHHHHHHHHhcCC---Cc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCCc-HHhHHHHHHHHHhccc
Q 036461 181 VNRAEELFVSMESMGC---KH--NVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD-VVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~ 250 (369)
+++|+..+++...... .+ ...++..+...+...|++++|+..|++.... +..+. ...+..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 8888888887754310 11 1456777888888888888888888887763 11111 1255566667777788
Q ss_pred HHHHHHHHHHHHHcCCCc-C---HHHHHHHHHHHHhCCCHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAA-D---TWAYRTFIDGLCKNGYIVEAVE 291 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~a~~ 291 (369)
+++|...+++.. ..... + ......++.++ ..|+.+.+..
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888888877 42111 1 12334444444 4666655554
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.23 E-value=5.1e-08 Score=78.82 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-C-ChHHHHHHH
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-K-EIEGALSLY 223 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 223 (369)
++|+++++.++..+ +-+..+|+.-..++...| .+++++.+++.+.... +-+..+|+.-..++.+. + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444443 223334444444444444 2455555555554443 33344444333333333 3 445555555
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhcccHH--------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC-------HHH
Q 036461 224 SEMLSKGIKPDVVIYNTLFIGLFEIHQVE--------RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY-------IVE 288 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~ 288 (369)
+++.+...+ +...|+.-...+...+.++ +++..++++.+.++ -|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHH
Confidence 555544322 3344433333333333333 56666666655432 355555555555555554 566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH--------------------HHHHHHHHhcccCC-----cccCHHHH
Q 036461 289 AVELFRTLRILKYELDIRAYNCLIDGLCKSGRL--------------------KIAWELFRSLPRGV-----LIADVVTY 343 (369)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 343 (369)
+++.++++.... +-|...|+.+-..+.+.|+. ........++.... ..+++..+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666666554 45666666655555555443 23333334443321 12466677
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 344 NIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
..++..|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7777777777777777777777653
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=4.8e-10 Score=99.22 Aligned_cols=150 Identities=9% Similarity=-0.057 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++..+.. +.+..+|..+...+.+.|++++|+..|++..+.+ +.+...+..+..++...|++++|.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999988874 5678899999999999999999999999999976 567889999999999999999999
Q ss_pred HHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---CChhHHHHHHHHHH
Q 036461 81 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---GKMDEASRLLELMI 157 (369)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 157 (369)
+.+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998863 4478899999999999999999999999998874 33677888899999999 99999999999998
Q ss_pred HcC
Q 036461 158 QIG 160 (369)
Q Consensus 158 ~~~ 160 (369)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 875
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.18 E-value=5.3e-08 Score=78.73 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC-ChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
++..+-....+.+..++|+++++.+...+ |.+..+|+.-..++...| .++++++.++.+.... +-+..+|+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~ 127 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWH 127 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 34444444455566678999999999877 556778888888888888 5999999999998874 34778888
Q ss_pred HHHHHHHhc-C-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCccHHHHH
Q 036461 100 SLIHGFCYA-N-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD--------EASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 100 ~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
.-..++... + ++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+++.. +.|...|+
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~ 205 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 877777766 6 888999999999877533 6777776655555555555 7888888888775 34777777
Q ss_pred HHHHHHHhcCC-------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 170 TLMDGFCLTGR-------VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 170 ~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.....+.+.+. ++++++.++++.... +.|...|+.+-..+.+.|.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777665 567777777776664 5566666665555555443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=1.5e-08 Score=81.58 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=139.8
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhH
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 87 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (369)
..+..-...|+..+...+...+.-.- ..++..-... ..+....+...+..+...|++++|...+++..
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~-------~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLIYS-------DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTTSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCCCC-------cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33433334677777776666553211 1222221111 12335566677888888899999999999887
Q ss_pred hCCC-CCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 036461 88 DENI-NPNVV----TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVSFNVIMNELCKNGKMDEASRLLELMI 157 (369)
Q Consensus 88 ~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (369)
+... .|+.. .+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6433 33322 3445777777788999999999988874222 22 2257888888999999999999998887
Q ss_pred Hc-----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCchHHHHHHHHHHHhhcCC-hHHHHHHHHH
Q 036461 158 QI-----GVRP-NAFVYNTLMDGFCLTGRVNRAEELFVSMESM----G-CKHNVFSYSILINGYCKNKE-IEGALSLYSE 225 (369)
Q Consensus 158 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 225 (369)
+. +..+ ...++..+...|.+.|++++|...+++.... + ...-..++..+..++...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 41 1122 2347788888999999999999998887543 1 11225678888888988884 5899888888
Q ss_pred HHh
Q 036461 226 MLS 228 (369)
Q Consensus 226 ~~~ 228 (369)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=1.9e-09 Score=86.11 Aligned_cols=196 Identities=11% Similarity=-0.032 Sum_probs=117.0
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++.+.|++++|+..+++..+.. +.+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHH
Confidence 356677788888888888888888888888765 4567788888888888888888888888887753 34677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFC 176 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (369)
.+..+..++...|++++|...|++..+.... +...+...+....+. .... -+........+.+......+...
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHHH--
Confidence 7888888888888888888888887664211 111111111111111 1111 11112222223333333333222
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLS 228 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 228 (369)
..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567777777776666553 23333333333333333 456666777766654
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=8.4e-08 Score=77.16 Aligned_cols=199 Identities=9% Similarity=0.079 Sum_probs=141.8
Q ss_pred cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCh-
Q 036461 56 CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT---YNSLIHGFCYANDWNEAKCLFIEMMDQGV-QPNV- 130 (369)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~- 130 (369)
..|+..+...+...+.-. ++ .++.. ....+... +...+..+...|++++|..++++...... .|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~~----~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYEV----LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHHT----TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhCC----CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 467777777777766432 11 12221 11222333 33446788899999999999999987532 1221
Q ss_pred ---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----c-CCC
Q 036461 131 ---VSFNVIMNELCKNGKMDEASRLLELMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAEELFVSMES----M-GCK 197 (369)
Q Consensus 131 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~ 197 (369)
..+..+...+...+++++|+..++.+.+.... ++ ..+++.+..+|...|++++|...++++.+ . +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 13334677777888999999999999884322 22 34689999999999999999999999873 1 112
Q ss_pred c-hHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-cHHhHHHHHHHHHhcc-cHHHHHHHHHHHHH
Q 036461 198 H-NVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-DVVIYNTLFIGLFEIH-QVERAFKLFDEMQR 263 (369)
Q Consensus 198 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 263 (369)
+ ...++..+..+|.+.|++++|...+++..+. +..+ -..++..+..++...| ++++|...+++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 2347888999999999999999999988753 2222 2678889999999999 46999999988765
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=3.3e-09 Score=73.39 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 99 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (369)
..+......+.+.|++++|+..|++..+.+ |.+..+|..+..++.+.|++++|+..|++.++.+ +.+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 355556666666666666666666666654 4455666666666666666666666666665542 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+..++...|++++|...|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666654
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=1.8e-09 Score=86.25 Aligned_cols=95 Identities=14% Similarity=-0.009 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYC 211 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (369)
.+..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555554442 2244445555555555555555555555554443 333444555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 036461 212 KNKEIEGALSLYSEMLS 228 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~ 228 (369)
..|++++|...|.+..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=5.5e-08 Score=78.25 Aligned_cols=164 Identities=12% Similarity=0.011 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--h
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV------VTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ---PN--V 130 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 130 (369)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344455555556666666555555443111 11 11222334444555555555555555432111 01 2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHc---C-CCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-Cch
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQI---G-VRP--NAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----C-KHN 199 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~ 199 (369)
.+++.+...|...|++++|...++++.+. . ..+ ...++..+..+|...|++++|...+++..... . ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 24444555555555555555555554421 0 000 11344445555555555555555555443221 0 001
Q ss_pred HHHHHHHHHHHhhcCChHHH-HHHHHHH
Q 036461 200 VFSYSILINGYCKNKEIEGA-LSLYSEM 226 (369)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 226 (369)
..++..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33444445555555555555 4434433
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.06 E-value=2.3e-08 Score=76.29 Aligned_cols=131 Identities=11% Similarity=-0.062 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 244 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (369)
...+..+...+...|++++|...+++.. .++..++..+..++...|++++|...+++...... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 3445667788889999999999998874 45778888899999999999999999999888643 366788888899
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCc---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAA---------------DTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+...|++++|...++.+.+..... ....+..+..++...|++++|...++++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999988753211 12677888888999999999999999988764
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.06 E-value=1.1e-08 Score=74.47 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (369)
.+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+....+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555555543221 34444445555555555555555555544432 223444444555555
Q ss_pred hCCCHHHHHHHHHHHHHc
Q 036461 282 KNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~ 299 (369)
..|++++|...++++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555555443
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.06 E-value=3.1e-08 Score=75.57 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 62 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
.+..+...+...|++++|+..|++.. +|+...+..+..++...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34445555556666666666665553 3355556666666666666666666666655542 224445555555555
Q ss_pred hCCChhHHHHHHHHHHHc
Q 036461 142 KNGKMDEASRLLELMIQI 159 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~ 159 (369)
..|++++|...++.+.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHh
Confidence 555555555555555554
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=9.7e-09 Score=71.71 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchH
Confidence 344455666666666666666666666666544 3345556666666666666666666666655532 22455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.+..+..++...|++++|...|++....
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555556666666666666666655544
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=3.8e-09 Score=75.38 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=67.8
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
.+...+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|+..|++.....+ .+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 345566667777777777777777777776652 33566677777777777777777777777766532 2455666677
Q ss_pred HHHHhCCChhHHHHHHHHHHHcC
Q 036461 138 NELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.++...|++++|...|+...+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777776653
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.3e-08 Score=70.37 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC
Q 036461 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG 284 (369)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 284 (369)
.....+.+.|++++|+..|++.++..+. +...|..+..++...|++++|+..++..++.+ +.+...+..+..++...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCC
Confidence 3334444444444444444444433211 33334444444444444444444444444332 123334444444444444
Q ss_pred CHHHHHHHHHHHHHc
Q 036461 285 YIVEAVELFRTLRIL 299 (369)
Q Consensus 285 ~~~~a~~~~~~~~~~ 299 (369)
++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 444444444444433
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=1.3e-08 Score=74.18 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|+..+++..+.. +.+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 44455555555555555555555555543 3344555555555555555555555555554432 224444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++...|++++|...+++....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=3e-08 Score=79.82 Aligned_cols=171 Identities=9% Similarity=-0.003 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC---CCC--H
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---NPN--V 95 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 95 (369)
.+...+..+...|++++|++.+++..+...... ........+..+...+...|++++|+..+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 455667788899999999999998887652100 0000112345566777888999999999999875321 111 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC----CC-cc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMD---QGV-QP--NVVSFNVIMNELCKNGKMDEASRLLELMIQIG----VR-PN 164 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~ 164 (369)
.+++.+...|...|++++|...|++..+ ... .+ ...++..+..+|...|++++|...+++..+.. .. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 211 11 12578889999999999999999999887642 11 12
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036461 165 AFVYNTLMDGFCLTGRVNRA-EELFVSME 192 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 192 (369)
..++..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788999999999999999 77787765
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=2.8e-09 Score=76.08 Aligned_cols=100 Identities=9% Similarity=-0.094 Sum_probs=91.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+..++..+...+.+.|++++|+..|+++...+ |.++..|..+..++...|++++|+..|++..... |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 55688899999999999999999999999987 6678999999999999999999999999998863 447888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQG 125 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (369)
|..+..+|...|++++|...|++.++..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3.5e-08 Score=77.10 Aligned_cols=188 Identities=7% Similarity=-0.074 Sum_probs=129.6
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHH-------HHHHHhcCChHHHHHHHHHhHhCCCCCC---------
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTI-------IDGLCKEGFVDKAKELFLKMKDENINPN--------- 94 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 94 (369)
..++...|.+.|.++...+ |.....|..+ ...+...++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 6899999999999999987 5567888888 5666666666666666666544 1221
Q ss_pred -------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 036461 95 -------------VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGV 161 (369)
Q Consensus 95 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (369)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 2233456677788888888888888877643 333355556667788888888888887554432
Q ss_pred Ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 036461 162 RPN--AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (369)
Q Consensus 162 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (369)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 111 2356677778888888888888888876443213 33455666677777888888888888887763
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=9.4e-09 Score=71.48 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=59.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
+...+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|++.+++..... +.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHH
Confidence 33445555555555555555555555555543 2344555555555555555555555555555431 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG 144 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (369)
+..+..++...|++++|...+++..... +.+...+..+..++...|
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555555555555555442 113334444444444433
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=9e-09 Score=77.85 Aligned_cols=158 Identities=10% Similarity=-0.075 Sum_probs=108.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CcHHhHHHHHHHHHhccc
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQ 250 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 250 (369)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578889999865555442 1346677888888888899999999998888762 111 234567777888888899
Q ss_pred HHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHcCC
Q 036461 251 VERAFKLFDEMQRH----GVAA--DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKY---EL--DIRAYNCLIDGLCKSG 319 (369)
Q Consensus 251 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g 319 (369)
+++|...+.+..+. +..+ ....+..+...+...|++++|...+++...... .+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888876653 1111 234566777888888899999888888764310 11 1234567777888888
Q ss_pred CHHHHHHHHHhcccC
Q 036461 320 RLKIAWELFRSLPRG 334 (369)
Q Consensus 320 ~~~~a~~~~~~~~~~ 334 (369)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887763
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.01 E-value=2e-08 Score=78.52 Aligned_cols=199 Identities=10% Similarity=-0.080 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHH-------HHHHHhcCChhHHHHHHHHHHcCCCCC--------------Ccccccch
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTL-------INGLCRTGHTIVALNLFEEMANGNGEF--------------GVVCKPNT 60 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~ 60 (369)
+|++.|.+..+.. |-....|..+ ...+.+.++..+++..+.......+.. ..++..-.
T Consensus 24 ~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 24 RSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 6899999999986 6677899988 678888888888888877776633110 00011112
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPN--VVSFNVIMN 138 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (369)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...+..+..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 345567788899999999999999988753 443366677778999999999999998665431 111 346778889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSIL 206 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (369)
++...|++++|+..|++.......| ..........++.+.|+.++|...|+++.... |+......|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999999998644324 34466778888999999999999999999874 444444433
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=2.3e-08 Score=68.82 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..+|..+...+...|++++|+..|+++.... +.+..++..+..++...|++++|+..++++.... +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3455666666666666666666666666544 3345556666666666666666666666665542 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+...+...|++++|...++++...
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666666554
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=9.6e-09 Score=77.70 Aligned_cols=156 Identities=11% Similarity=0.039 Sum_probs=93.0
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC----CC-CCCHHhHHHHHHH
Q 036461 30 CRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NI-NPNVVTYNSLIHG 104 (369)
Q Consensus 30 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~ 104 (369)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4578888888855555432 1345677888888888888888888888887651 11 1234556677777
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCC-ccHHHHHHHHH
Q 036461 105 FCYANDWNEAKCLFIEMMDQ----GVQP--NVVSFNVIMNELCKNGKMDEASRLLELMIQI----GVR-PNAFVYNTLMD 173 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 173 (369)
+...|++++|...+++.... +..+ ....+..+...+...|++++|...+++..+. +.+ ....++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 77888888888777776543 1011 1234555666666677777777776665532 111 01223455556
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 036461 174 GFCLTGRVNRAEELFVSME 192 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~ 192 (369)
.+...|++++|.+.+++..
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 6666666666666665554
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=1.2e-08 Score=72.73 Aligned_cols=110 Identities=9% Similarity=-0.052 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLK 85 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (369)
.|++..+.. |.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555443 3455566777777777778888877777777765 45677777777777777777777777777
Q ss_pred hHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 86 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+.... +.+...+..+..++...|++++|...|++.++.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76652 335666777777777777777777777777664
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.99 E-value=1.2e-08 Score=83.68 Aligned_cols=151 Identities=11% Similarity=-0.029 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHH
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------VVIYNTLFIG 244 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 244 (369)
+++++|...++...... +.+...+..+...+.+.|++++|+..|++.+....... ...+..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 23456777778888888888888888888887643321 3566666666
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIA 324 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 324 (369)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666653 3356666666666666777777777776666654 44556666666666666666666
Q ss_pred -HHHHHhcc
Q 036461 325 -WELFRSLP 332 (369)
Q Consensus 325 -~~~~~~~~ 332 (369)
...|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=2.3e-08 Score=73.81 Aligned_cols=120 Identities=8% Similarity=0.128 Sum_probs=68.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH-HHhcC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG-FCYAN 109 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 109 (369)
..|++++|+..+++..... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+..+ +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp -----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 4556666666666665544 3445566666666666666666666666665542 2245555555555 55566
Q ss_pred CH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 110 DW--NEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 110 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
++ ++|...+++..... +.+...+..+..++...|++++|...++.+.+.
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 65 66666666666543 224455555666666666666666666666654
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=2.3e-09 Score=87.97 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=85.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---------------hhhHHHHHHHHHhcCChHHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---------------TVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
+...|..+...+.+.|++++|+..|+++.... +.+ ..+|..+..++.+.|++++|+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-------EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-------hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56688999999999999999999999999876 222 35666666666666666666666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHH-HHHHHHH
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEA-SRLLELM 156 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 156 (369)
|+++.+.. +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.+++ ...|..|
T Consensus 219 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 219 CNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666542 3355666666666666666666666666666543 22444555555566666655555 3344444
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.95 E-value=4.2e-06 Score=67.41 Aligned_cols=260 Identities=11% Similarity=0.055 Sum_probs=157.6
Q ss_pred HhHHHHHHHH---HHhcCChh-HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC----------hHHHHHHHH
Q 036461 19 VFTYNTLING---LCRTGHTI-VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF----------VDKAKELFL 84 (369)
Q Consensus 19 ~~~~~~l~~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~ 84 (369)
...|..+... ..+.|.+. +|+.+++.+...+ |.+..+|+.--.++...+. +++++.+++
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~ 98 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 98 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 3445444443 34566665 7999999999987 4556777766555554443 678888888
Q ss_pred HhHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHHcCC
Q 036461 85 KMKDENINPNVVTYNSLIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGK-MDEASRLLELMIQIGV 161 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~ 161 (369)
.+.... |-+..+|+.-..++...+ .+++++.+++++.+..+. |..+|+.-..++...|. ++++++.++.+++..
T Consensus 99 ~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~- 175 (331)
T 3dss_A 99 SCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN- 175 (331)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-
Confidence 887763 347788887777777777 488899999998887543 77778777777777787 488888888888876
Q ss_pred CccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 036461 162 RPNAFVYNTLMDGFCLT--------------GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (369)
Q Consensus 162 ~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (369)
+.|...|+.....+... +.++++++.+....... |.|..+|+.+-..+.+.-.
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~------------ 242 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSG------------ 242 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSC------------
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccC------------
Confidence 44777777666655554 33556666666666554 4555555544333333200
Q ss_pred hCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 036461 228 SKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI---DGLCKNGYIVEAVELFRTLRILKYELD 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~ 304 (369)
.++ .+ -...+..+++++.++++.+..+ -+...+..++ ......|..+++...+.++.+.+ |..
T Consensus 243 ----~~~-~~-------~~~~~~l~~el~~~~elle~~p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r 308 (331)
T 3dss_A 243 ----RCE-LS-------VEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMR 308 (331)
T ss_dssp ----GGG-CC-------HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGG
T ss_pred ----ccc-cc-------hHHHHHHHHHHHHHHHHHhhCc-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cch
Confidence 000 00 0112345566666666665421 1222222221 12223566667777777777665 444
Q ss_pred HHHHHHHHHHH
Q 036461 305 IRAYNCLIDGL 315 (369)
Q Consensus 305 ~~~~~~l~~~~ 315 (369)
..-|..+...+
T Consensus 309 ~~~y~d~~~~~ 319 (331)
T 3dss_A 309 AAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 45555554433
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.95 E-value=1e-06 Score=70.99 Aligned_cols=183 Identities=10% Similarity=-0.055 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH----------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|+++++.++..+ |-+..+|+.--.++...+. +++++.+++.+...+ |-+..+|+.-..++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 36899999999876 6677788877666665554 678999999999877 66888999888888
Q ss_pred HhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC----
Q 036461 71 CKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND-WNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---- 143 (369)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (369)
...+ .+++++.+++++.+.. +.|..+|+.-..++...|. +++++..++++++..+. |...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 8888 4899999999999874 4488899888888888888 69999999999987644 777887776666554
Q ss_pred ----------CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhc
Q 036461 144 ----------GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-----------GRVNRAEELFVSMESM 194 (369)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 194 (369)
+.++++++.+...+... |-|...|+.+-..+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34778899999888875 45777777555555444 2356666666666655
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=6.6e-08 Score=67.37 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 036461 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (369)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (369)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 334444444444444444444444444443211 33344444444444444444444444444432 1234444444444
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 036461 280 LCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 280 ~~~~g~~~~a~~~~~~~~~~ 299 (369)
+...|++++|...+++....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44455555555555444443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=5.2e-08 Score=67.61 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.+..+..++...|++++|...+++..... +.+...+..++..+...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333344444444444444444443332 2233333444444444444444444444433
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=1.8e-08 Score=71.83 Aligned_cols=110 Identities=10% Similarity=-0.028 Sum_probs=80.5
Q ss_pred HHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 41 LFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
.|+++...+ |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555543 4456677777888888888888888888877653 34677777788888888888888888888
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
..... +.+...+..+..++...|++++|...|+...+.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87764 235667777777888888888888888877765
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.93 E-value=7.6e-09 Score=73.36 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=77.9
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
|++..+.. |.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++.
T Consensus 7 l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 7 LAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp --CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444332 3345566677777888888888888888887765 456777788888888888888888888887
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 87 KDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.... +.+...+..+..++...|++++|...|++....
T Consensus 79 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 79 ALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7653 346667777778888888888888888877665
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=1.1e-07 Score=65.25 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333444444444443333321 1223333333444444444444444444443
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=1.2e-08 Score=75.45 Aligned_cols=123 Identities=8% Similarity=0.133 Sum_probs=102.0
Q ss_pred HHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhCCCh--
Q 036461 70 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE-LCKNGKM-- 146 (369)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 146 (369)
+...|++++|+..+++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356789999999999988763 4578899999999999999999999999998864 3367778888888 7789998
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036461 147 DEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (369)
++|...++.+.+.. +.+...+..+..++...|++++|...++++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999875 4467888899999999999999999999998874
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.91 E-value=4.4e-08 Score=67.76 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...|..+...+.+.|++++|+..|++..+.. |.+...|..+..++.+.|++++|+..+++..+.. +.+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4566677777777777777777777777765 4556777777777777777777777777776653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777777777654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=1.2e-07 Score=64.34 Aligned_cols=98 Identities=22% Similarity=0.139 Sum_probs=69.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHH
Confidence 4566677777777777777777777777654 4456677777777777777777777777776652 3356667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..++...|++++|...+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777777777777665
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=3.8e-08 Score=66.26 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=58.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC--CH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NV 95 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 95 (369)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchH
Confidence 44455556666666666666666666666544 3345556666666666666666666666665541 22 35
Q ss_pred HhHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 036461 96 VTYNSLIHGFCYA-NDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 96 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 124 (369)
..+..+..++... |++++|.+.+++....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555666666666 6666666666666554
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=5.7e-09 Score=78.73 Aligned_cols=151 Identities=14% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---------------HH
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD---------------VV 236 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 236 (369)
+......|+++++.+.++.-.... ......+..+...+...|++++|...|.+......... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445566666666655332221 22344566667777777888888888877776432211 14
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLC 316 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (369)
.+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|++..... +.+..++..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 55555556666666666666666665542 2345555566666666666666666666665543 334555555555555
Q ss_pred cCCCHHHHH
Q 036461 317 KSGRLKIAW 325 (369)
Q Consensus 317 ~~g~~~~a~ 325 (369)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555554444
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=5e-08 Score=67.46 Aligned_cols=99 Identities=16% Similarity=0.026 Sum_probs=86.5
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567778888999999999999999998864 4478889999999999999999999999999876 567888999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1.1e-08 Score=77.23 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=59.2
Q ss_pred HhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----------------hhHH
Q 036461 71 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNV----------------VSFN 134 (369)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~ 134 (369)
...|+++++.+.++..... .......+..+...+...|++++|...|++....... +. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHH
Confidence 3445666666655433221 1113455667777888888888888888888764221 11 3344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM 194 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (369)
.+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...|++....
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44444444444444444444444432 223444444444444444444444444444433
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=3.4e-08 Score=69.92 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=87.0
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|...|+++.... +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34566677888999999999999999998874 4578889999999999999999999999999886 667888999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++...|++++|...|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998774
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=9e-08 Score=66.22 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCC--CCCC---
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPN--- 94 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--- 94 (369)
.++..+...+.+.|++++|+..|+++.+.+ |.+...|..+..+|...|++++|++.+++.++.. ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 356666777777777777777777777655 4456667777777777777777777777665421 0111
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 95 -VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+|..+..++...|++++|+..|++.+..
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 124555556666666666666666666553
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=1.4e-07 Score=68.55 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=73.9
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 80 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 345567777777778888888888888877765 4467777777778888888888888888777653 33567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
.|..+..++...|++++|...|++.++.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777788888888887777765
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=1.8e-07 Score=65.64 Aligned_cols=99 Identities=14% Similarity=-0.029 Sum_probs=61.3
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHH
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 96 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (369)
.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 445566666666666666666666666666654 3445666666666666666666666666665542 23455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 97 TYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+..+..++...|++++|...|++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666666666554
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.79 E-value=1.6e-07 Score=65.94 Aligned_cols=117 Identities=11% Similarity=-0.135 Sum_probs=95.3
Q ss_pred CcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 233 PDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
.+...+..+...+...|++++|...+....+.. +.+...+..+..++...|++++|...++++.... +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999998874 4468889999999999999999999999999876 56788999999
Q ss_pred HHHHcCCCHHHHHHHHHhcccCCc----ccCHHHHHHHHHHHH
Q 036461 313 DGLCKSGRLKIAWELFRSLPRGVL----IADVVTYNIMIHALC 351 (369)
Q Consensus 313 ~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 351 (369)
.++...|++++|...|+++.+... ..+......+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876421 113444544444443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=8.6e-07 Score=60.02 Aligned_cols=89 Identities=15% Similarity=0.020 Sum_probs=34.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 036461 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRL 321 (369)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (369)
...+...|++++|...++...... +.+...+..+..++...|++++|...++++.... +.+...+..++.++...|++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhH
Confidence 333333344444444443333321 1133333333344444444444444444443332 22333334444444444444
Q ss_pred HHHHHHHHhcc
Q 036461 322 KIAWELFRSLP 332 (369)
Q Consensus 322 ~~a~~~~~~~~ 332 (369)
++|...+++..
T Consensus 89 ~~A~~~~~~~~ 99 (118)
T 1elw_A 89 EEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=6.4e-08 Score=67.19 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCC--CCC--
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPN-- 94 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-- 94 (369)
...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++++..... +++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4456667777777777777777777777654 44566677777777777777777777777655311 111
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 95 --VVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 95 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..++..+..++...|++++|...|++....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666677777777777777776664
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2.7e-07 Score=63.81 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
+..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..+++.++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555555555555544443 33344444444445555555555554444443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.5e-07 Score=64.40 Aligned_cols=98 Identities=14% Similarity=-0.004 Sum_probs=63.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc----hhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCC
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN----TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 93 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (369)
+...+..+...+...|++++|+..|++..+.. |+ ...+..+..++...|++++|+..+++..+.. +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-cc
Confidence 45566666667777777777777777776654 33 4566666666666777777777776665542 23
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 94 NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+...+..+..++...|++++|...|++....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5556666666666667777777776666654
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.76 E-value=1.1e-07 Score=69.14 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=89.0
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++.... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55678888999999999999999999999874 3478899999999999999999999999999886 667889999999
Q ss_pred HHHcCCCHHHHHHHHHhcccC
Q 036461 314 GLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998874
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=9.5e-08 Score=65.43 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
+..+...+.+.|++++|...++.+++.. +.+...+..+..++...|++++|+..|+++.... +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455666677777777777777777653 3366677777777777777777777777777665 4466677777777777
Q ss_pred CCCHHHHHHHHHhcccC
Q 036461 318 SGRLKIAWELFRSLPRG 334 (369)
Q Consensus 318 ~g~~~~a~~~~~~~~~~ 334 (369)
.|++++|...++++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.4e-06 Score=72.80 Aligned_cols=204 Identities=7% Similarity=-0.027 Sum_probs=146.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccc----------cchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCC
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCK----------PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP 93 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 93 (369)
-.+.+.+.|++++|++.|..+.+..+..+.... ....++..++..|...|++++|.+.+..+... +..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 456788899999999999999886632111000 00124788999999999999999999988652 1111
Q ss_pred CH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHcC----
Q 036461 94 NV----VTYNSLIHGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVSFNVIMNELCKNGKMDEASRLLELMIQIG---- 160 (369)
Q Consensus 94 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 160 (369)
+. .+.+.+...+...|+++.|..++...... +..+ -..++..+...+...|++++|..+++.+...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 22334445555678999999999887542 2222 24467788999999999999999999886541
Q ss_pred -CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCch--HHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 161 -VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM----GCKHN--VFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.+....++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223567888899999999999999999887542 22222 34566777888899999999998887765
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=1.3e-07 Score=64.69 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+..+...+.+.|++++|+..|+++.+.. |.+...|..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45556667777777777777777777765 4466777777777777777777777777776652 335666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+..++...|++++|...+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777654
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=3.9e-07 Score=61.14 Aligned_cols=94 Identities=11% Similarity=-0.025 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--hHHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKH--NVFSYSILINGY 210 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 210 (369)
+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3333444444444444444444444332 1233334444444444444444444444444332 22 233444444444
Q ss_pred hhc-CChHHHHHHHHHHHh
Q 036461 211 CKN-KEIEGALSLYSEMLS 228 (369)
Q Consensus 211 ~~~-~~~~~a~~~~~~~~~ 228 (369)
... |++++|...+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444444
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.69 E-value=3.2e-07 Score=78.65 Aligned_cols=150 Identities=10% Similarity=-0.023 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHHHH
Q 036461 181 VNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--------------VVIYNTLFIGLF 246 (369)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~ 246 (369)
+++|...++...... +.....+..+...+.+.|++++|+..|++.++...... ...|..+..++.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333221 22345667777778888888888888888777532211 356666777777
Q ss_pred hcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-
Q 036461 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAW- 325 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 325 (369)
+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776653 3356667777777777777777777777776654 345556666666676666666654
Q ss_pred HHHHhccc
Q 036461 326 ELFRSLPR 333 (369)
Q Consensus 326 ~~~~~~~~ 333 (369)
..++.|..
T Consensus 407 ~~~~~~f~ 414 (457)
T 1kt0_A 407 RIYANMFK 414 (457)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 34455543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.69 E-value=2.6e-07 Score=64.01 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCC--CcC----HHHHHH
Q 036461 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGV--AAD----TWAYRT 275 (369)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 275 (369)
.+..+...+...|++++|...+.+...... .+...+..+...+...|++++|...++.+.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555544321 1334444444444445555555555544443211 011 333444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 036461 276 FIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 276 l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
+..++...|++++|...++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.4e-06 Score=70.59 Aligned_cols=199 Identities=12% Similarity=-0.011 Sum_probs=142.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 036461 65 TIIDGLCKEGFVDKAKELFLKMKDENINPN----------------VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQ- 127 (369)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 127 (369)
.-...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|...+.++...-..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345667889999999999999987522111 124678899999999999999999887653111
Q ss_pred CCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 036461 128 PNV----VSFNVIMNELCKNGKMDEASRLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG--- 195 (369)
Q Consensus 128 ~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 195 (369)
++. .+.+.+...+...|+++.+..++...... +. ..-..++..+...+...|++++|..++..+...-
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 12233344445678899999999887643 22 2235677889999999999999999999885431
Q ss_pred --CCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC---CCCC-c--HHhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 036461 196 --CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKP-D--VVIYNTLFIGLFEIHQVERAFKLFDEMQR 263 (369)
Q Consensus 196 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (369)
-+....++..++..|...|++++|..++++.... ...| . ...+..+...+...+++++|...+....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223567888999999999999999999987753 1122 1 24556667777888999999888877654
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2e-06 Score=60.92 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFN 134 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (369)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555666666666666666666666553 233 4455555555555566666666655555442 12344445
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc
Q 036461 135 VIMNELCKNGKMDEASRLLELMIQI 159 (369)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (369)
.+..++...|++++|...++...+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555544
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.66 E-value=1.4e-06 Score=60.27 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccch---hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---H
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNT---VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN---V 95 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 95 (369)
+..+...+.+.|++++|+..|+++.... |.+. ..+..+..++...|++++|+..|+++.+.. +.+ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccH
Confidence 4456667777888888888888877755 2233 467777778888888888888888877642 223 5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
..+..+..++...|++++|...|+++...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677777777888888888888877765
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.65 E-value=3.3e-07 Score=66.15 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCCHHHHHHHHHhcccC----Ccc-cCHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYE-L----DIRAYNCLIDGLCKSGRLKIAWELFRSLPRG----VLI-ADVV 341 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~ 341 (369)
.+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555566666666665555432100 0 1334555566666666666666666655431 111 1134
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 342 TYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
++..+..++...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55566667777777777777776643
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.62 E-value=7.2e-08 Score=82.61 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=77.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc---------------hhhHHHHHHHHHhcCChHHHHHH
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN---------------TVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
....|..+...+.+.|++++|+..|+++.... +.+ ..+|..+..++.+.|++++|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-------EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-------cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45578889999999999999999999999865 222 35566666666666666666666
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHH
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEAS 150 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (369)
++++++.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...++.+++.
T Consensus 340 ~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 340 CDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66665542 2355556666666666666666666666665542 123344555555555555544443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.62 E-value=8.8e-07 Score=76.24 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHH
Q 036461 174 GFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 253 (369)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (369)
.+.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..+++..+.... +...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 333445555555555555555555555555554221 34444455555555555555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 036461 254 AFKLFDEMQRHGVAADTWAYRTFIDG--LCKNGYIVEAVELFR 294 (369)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 294 (369)
|...++++.+... .+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555444321 122222223222 444455555555444
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=5.3e-08 Score=83.79 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 100 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (369)
.+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34455566778899999999999999876 5568899999999999999999999999999873 447888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhCCChhHHHHHHH
Q 036461 101 LIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNE--LCKNGKMDEASRLLE 154 (369)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 154 (369)
+..+|...|++++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999988642 244556556555 778899999999988
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=2.9e-06 Score=74.48 Aligned_cols=172 Identities=10% Similarity=-0.065 Sum_probs=139.1
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGH----------TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++.++++.+.+ |-+..+|+.--.++...|+ ++++++.++.+.+.+ |-+..+|+.-..++
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-------pK~y~aW~hR~w~l 117 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 37899999999986 6677889988888888887 899999999999987 66788999999999
Q ss_pred HhcC--ChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC----
Q 036461 71 CKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN-DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKN---- 143 (369)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (369)
.+.+ +++++++.++++.+.. +.+..+|+....++.+.| .++++++.++++++..+. +...|+.....+...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 9999 7799999999999875 448889998888888888 899999999999887543 777888777766653
Q ss_pred ----------CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH
Q 036461 144 ----------GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR 183 (369)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (369)
+.++++++.++.+.... +-+...|..+...+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44678888888888765 4467777777777776666433
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=2e-06 Score=62.19 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=73.0
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCC------Ccc-----cccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF------GVV-----CKPNTVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
....+......+.+.|++++|+..|++........ ... .+.+...|..+..++.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35578888999999999999999999988751000 000 0223456677777777777777777777777
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 87 KDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
+... +.+...|..+..++...|++++|...|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6652 335667777777777777777777777777665
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.54 E-value=1.4e-06 Score=72.24 Aligned_cols=127 Identities=8% Similarity=-0.038 Sum_probs=74.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCC---------CcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF---------GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
...|..+...+.+.|++++|+..|+++.+..... ....+.+..+|..+..++.+.|++++|++.++++.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999988721000 0001233455666666666666666666666666654
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChh
Q 036461 90 NINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMD 147 (369)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (369)
. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 2 2345556666666666666666666666665542 113334444444444443333
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=8.2e-06 Score=71.61 Aligned_cols=178 Identities=9% Similarity=-0.017 Sum_probs=143.7
Q ss_pred HhcCC-hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC----------hHHHHHHHHHhHhCCCCCCHHhH
Q 036461 30 CRTGH-TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF----------VDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 30 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+.|+ .++|++.++++...+ |.+..+|+.-..++...|+ ++++++.++.+.+.. +-+..+|
T Consensus 39 ~~~~~~~eeal~~~~~~l~~n-------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW 110 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34444 467899999999977 5567888888888877777 999999999999874 3488899
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 99 NSLIHGFCYAN--DWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 99 ~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
+.-..++.+.+ ++++++..++++.+.... +..+|+.-..++...| .++++++.++.+++.. +.+...|+.....+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll 188 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHH
Confidence 99888888999 779999999999998644 7888988888888888 8999999999999876 44788888877776
Q ss_pred Hhc--------------CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 176 CLT--------------GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 176 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
.+. +.++++++.++.+.... |.+..+|......+.+.+..++
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 663 45788999999888775 6678888888777777666443
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=1.7e-06 Score=62.29 Aligned_cols=28 Identities=7% Similarity=-0.156 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
.++..+...+...|++++|+..+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=4.7e-07 Score=61.55 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=64.6
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCC
Q 036461 31 RTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (369)
..|++++|+..|+++.+.+.. -+.+...+..+..++...|++++|+..|++..+.. |.+...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 457888888888888875210 03456778888888888888888888888887763 3467778888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 036461 111 WNEAKCLFIEMMDQ 124 (369)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (369)
+++|...+++....
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887765
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.52 E-value=7.8e-06 Score=56.37 Aligned_cols=26 Identities=12% Similarity=0.223 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 98 YNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
+..+..++...|++++|...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=4.9e-07 Score=61.45 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHH
Q 036461 1 MEAAALFMKLRVFG--CEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDK 78 (369)
Q Consensus 1 ~~A~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (369)
++|+..|++.++.+ -|.+..+|..+..++...|++++|+..|+++.+.. |.+...+..+..++...|++++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCCHHH
Confidence 57899999999874 24566789999999999999999999999999976 5568899999999999999999
Q ss_pred HHHHHHHhHhC
Q 036461 79 AKELFLKMKDE 89 (369)
Q Consensus 79 a~~~~~~~~~~ 89 (369)
|+..+++....
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=1.9e-06 Score=71.53 Aligned_cols=91 Identities=8% Similarity=-0.129 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHH
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIH 348 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (369)
+...+..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777777888888888888888887665 4567777778888888888888888888877642 225666677777
Q ss_pred HHHhcCchHHHHH
Q 036461 349 ALCADGKMDKARD 361 (369)
Q Consensus 349 ~~~~~g~~~~A~~ 361 (369)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=7.2e-07 Score=73.17 Aligned_cols=149 Identities=12% Similarity=0.018 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 036461 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (369)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (369)
....+..+...+.+.|++++|...|.+.+.. .|+... +...++.+++...+. ...+..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3456777788888899999999999988875 233321 223344444332221 126677788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHH-HHhcCchH
Q 036461 279 GLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHA-LCADGKMD 357 (369)
Q Consensus 279 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 357 (369)
+|.+.|++++|+..+++++... +.+...+..+..+|...|++++|...|+++.+... -+...+..+..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888775 55778888888888888888888888888877532 134455555544 23456677
Q ss_pred HHHHHHHHhhc
Q 036461 358 KARDLFLDMEA 368 (369)
Q Consensus 358 ~A~~~~~~m~~ 368 (369)
++.+.|.+|.+
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 77777777653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=1.8e-06 Score=60.94 Aligned_cols=96 Identities=10% Similarity=-0.041 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcCCCc------CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA------DT-----WAYRTFIDGLCKNGYIVEAVELFRTLRIL------ 299 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 299 (369)
.+......+...|++++|+..|+..++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455556666777777777777766642210 11 25555666666666666666666666654
Q ss_pred -CCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 300 -KYELDIRAY----NCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 300 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
. +.+...| .....++...|++++|+..|++.++
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 3344455 5555566666666666666665554
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.6e-07 Score=62.02 Aligned_cols=90 Identities=18% Similarity=0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC-------HHHH
Q 036461 271 WAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD-------VVTY 343 (369)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~ 343 (369)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++.+.. |+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 344445555555555555555555555443 3344555555555555555555555555555431 22 3344
Q ss_pred HHHHHHHHhcCchHHHHHHH
Q 036461 344 NIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~ 363 (369)
..+..++...|++++|++.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 44444555555544444433
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=4e-06 Score=60.61 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 165 AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
...+..+..++.+.|++++|+..++.+.... +.+...|..+..++...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455555666666666666666666665553 444555666666666666666666666666554
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=6.4e-06 Score=58.19 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=67.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcc-----cccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC----
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE---- 89 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (369)
...+......+.+.|++++|+..|++..+..+.+... .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4456778888999999999999999999866210000 0001226777777777777777777777777653
Q ss_pred -CCCC-CHHhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 90 -NINP-NVVTY----NSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 90 -~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+.| +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0022 34455 6666666666666666666666654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=1.4e-06 Score=71.49 Aligned_cols=148 Identities=9% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...+..+...+.+.|++++|+..|+++.... |+... +...++.+++...+ ...+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~-------~~~~~~~~~~~~~l----------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFM-------FQLYGKYQDMALAV----------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHH-------HTCCHHHHHHHHHH----------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchh-------hhhcccHHHHHHHH----------HHHHH
Confidence 4567788888999999999999999988754 44321 11122222222211 11245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHH-HHh
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDG-FCL 177 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 177 (369)
..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 555556666666666666666655542 2244555556666666666666666666655442 1133333333333 222
Q ss_pred cCChHHHHHHHHHHHh
Q 036461 178 TGRVNRAEELFVSMES 193 (369)
Q Consensus 178 ~~~~~~a~~~~~~~~~ 193 (369)
.+..+++...|..+..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3445555555555543
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=3.8e-06 Score=56.72 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 80 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (369)
++|++.|++..+.. |.+...|..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 36788888888875 5678888889999999999999999999988876 456778888888999999999999
Q ss_pred HHHHHhHhC
Q 036461 81 ELFLKMKDE 89 (369)
Q Consensus 81 ~~~~~~~~~ 89 (369)
..|++....
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887653
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.37 E-value=3.1e-06 Score=72.49 Aligned_cols=124 Identities=9% Similarity=-0.152 Sum_probs=62.1
Q ss_pred HHhcccHHHHHHHHHHHHHc---CCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHH
Q 036461 245 LFEIHQVERAFKLFDEMQRH---GVAA----DTWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAYNC 310 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 310 (369)
+...|++++|..++++.++. -..+ ...+++.++.+|...|++++|..++++.+.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455666666666554431 0111 1234555566666666666666666555421 1 0112234555
Q ss_pred HHHHHHcCCCHHHHHHHHHhccc-----CCc-ccC-HHHHHHHHHHHHhcCchHHHHHHHHHhhc
Q 036461 311 LIDGLCKSGRLKIAWELFRSLPR-----GVL-IAD-VVTYNIMIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 311 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
|+..|...|++++|..+++++.+ .|. .|+ ..+...+..++...|.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655532 111 111 22334444555566666666666666543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=1.6e-05 Score=55.56 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC 141 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (369)
+...|...+.+++|++.|++..+.| ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4444444445555555555554442 44444444444444 445555555555554443 3334444444444
Q ss_pred h----CCChhHHHHHHHHHHHcC
Q 036461 142 K----NGKMDEASRLLELMIQIG 160 (369)
Q Consensus 142 ~----~~~~~~a~~~~~~~~~~~ 160 (369)
. .++.++|..+|+...+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 445555555555544443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=2.1e-06 Score=73.57 Aligned_cols=131 Identities=10% Similarity=-0.063 Sum_probs=86.6
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCHHhHH
Q 036461 28 GLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYN 99 (369)
Q Consensus 28 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 99 (369)
.+..+|++++|+.++++....... ++...+....+++.|+.+|...|++++|+.++++.... | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999888764321 11111223567899999999999999999999887542 2 122345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 036461 100 SLIHGFCYANDWNEAKCLFIEMMDQ-----GVQ-P-NVVSFNVIMNELCKNGKMDEASRLLELMIQ 158 (369)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (369)
.|...|...|++++|..++++.... |.. | ...+...+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877542 211 1 122334445555566666666666666654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=2.8e-05 Score=54.38 Aligned_cols=111 Identities=9% Similarity=-0.074 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCChhHH
Q 036461 74 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCK----NGKMDEA 149 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 149 (369)
+++++|++.|++..+.|. ++.. +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356677777777766652 2222 5556666666666777777766654 45556666666665 5667777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 036461 150 SRLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAEELFVSMESMG 195 (369)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 195 (369)
..+|++..+.| ++..+..+...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777666654 44555566666666 566666666666666654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.6e-06 Score=55.76 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=60.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCC---
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--- 94 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 94 (369)
+...|..+...+.+.|++++|+..|++..... |.+...+..+..++...|++++|++.+++..+.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHH
Confidence 45567777777777888888888888777765 4456777777777777888888888877777642 112
Q ss_pred ---HHhHHHHHHHHHhcCCHHHHHHH
Q 036461 95 ---VVTYNSLIHGFCYANDWNEAKCL 117 (369)
Q Consensus 95 ---~~~~~~l~~~~~~~~~~~~a~~~ 117 (369)
...+..+..++...|+++.|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 34444455555555554444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.23 E-value=1.4e-05 Score=51.05 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|+..+++..+.. +.+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3455555556666666666666666665543 3345555556666666666666666666655432 2234444
Q ss_pred HHHHHHH
Q 036461 99 NSLIHGF 105 (369)
Q Consensus 99 ~~l~~~~ 105 (369)
..+..++
T Consensus 81 ~~l~~~~ 87 (91)
T 1na3_A 81 QNLGNAK 87 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=5.1e-06 Score=58.56 Aligned_cols=93 Identities=14% Similarity=0.014 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCh----------hHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHH
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHT----------IVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGL 70 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (369)
++|++.++...+.. |.+...|+.+..++...+++ ++|+..|++..+.+ |.+..+|..+..+|
T Consensus 19 eeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 19 EQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHH
Confidence 46889999999886 77899999999999998875 49999999999977 55688999999999
Q ss_pred HhcC-----------ChHHHHHHHHHhHhCCCCCCHHhHHHHHH
Q 036461 71 CKEG-----------FVDKAKELFLKMKDENINPNVVTYNSLIH 103 (369)
Q Consensus 71 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (369)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 788888888888874 556555544433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=2.2e-05 Score=52.84 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 036461 37 VALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKC 116 (369)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (369)
.|+..|++..+.+ |.+...+..+..++...|++++|+..|++..... +.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777655 4556677777777777777777777777776652 3356667777777777777777777
Q ss_pred HHHHHHhc
Q 036461 117 LFIEMMDQ 124 (369)
Q Consensus 117 ~~~~~~~~ 124 (369)
.|++....
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=2.2e-05 Score=50.09 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALC 351 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (369)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44444555555555555555555555443 3344455555555555555555555555554431 113344444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=1.4e-05 Score=56.39 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=76.8
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh----------HHHHHHHHHhHhCCCCCCHHhH
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV----------DKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
..+.+.+++|++.++...+.+ |.+...|..+..++...+++ ++|+..|++.++.. |.+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHH
Confidence 345677999999999999987 66889999999999988765 58999999988863 3367788
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 99 NSLIHGFCYAN-----------DWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 99 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
..+..+|...| ++++|+..|++.++. .|+...|...+
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888764 788888888888775 45555444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.07 E-value=2.5e-05 Score=51.13 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=56.0
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
|.++.+|..+..++.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567788889999999999999999999998876 45677888999999999999999999988765
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=4.4e-05 Score=49.90 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+...+..+..+|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666666666655554 33455555556666666666666666555543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.93 E-value=0.00043 Score=56.14 Aligned_cols=50 Identities=10% Similarity=-0.112 Sum_probs=31.6
Q ss_pred CCcCHhHHHHHHHHHHh--cC---ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHH
Q 036461 15 CEPNVFTYNTLINGLCR--TG---HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLC 71 (369)
Q Consensus 15 ~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (369)
.|.+..+|...+++... .+ +..+|+.+|+++.+.+ |.....|..+..++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 46777888887766543 23 3467888899888876 333455555444443
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.66 E-value=0.00048 Score=58.11 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=73.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCH
Q 036461 24 TLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNV 95 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 95 (369)
..+..+.+.|++++|+.++++....... .+...+....+++.++.+|...|++++|+.+++++... | .+...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455677889999999999999875422 11111223567899999999999999999999987642 2 11124
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5678888999999999999998888754
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00017 Score=60.79 Aligned_cols=93 Identities=6% Similarity=-0.166 Sum_probs=65.3
Q ss_pred hcCChhHHHHHHHHHHcCCCC-CCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC-----C--CCCCHHhHHHHH
Q 036461 31 RTGHTIVALNLFEEMANGNGE-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYNSLI 102 (369)
Q Consensus 31 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 102 (369)
..|++++|+.++++....... .+...+....+++.|..+|...|++++|+.++++.... | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887753211 11111222467888999999999999999998887542 2 112245678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 036461 103 HGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~ 123 (369)
..|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887754
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.0002 Score=46.41 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=54.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTW-AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
....+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|+++.... +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 4556667788888888888777753 33556 77777777888888888888888877664 333333311 4
Q ss_pred CHHHHHHHHHhccc
Q 036461 320 RLKIAWELFRSLPR 333 (369)
Q Consensus 320 ~~~~a~~~~~~~~~ 333 (369)
.+.++...|++...
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666665543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.60 E-value=0.00021 Score=60.19 Aligned_cols=62 Identities=3% Similarity=-0.290 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+++.++.+|...|++++|..++++++.. | .+....+++.|...|...|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4445555555555555555555554421 1 011123445555555555555555555555443
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=0.00075 Score=43.11 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=38.1
Q ss_pred CcCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555544333 456666666666654 344555556666666666666666666666554
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00077 Score=43.58 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=29.1
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 036461 208 NGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (369)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (369)
..+...|++++|...++++.+..+. +.. .+..+..++...|++++|...++...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555554222 333 4555555555555555555555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.00061 Score=57.49 Aligned_cols=91 Identities=10% Similarity=-0.092 Sum_probs=47.5
Q ss_pred HHHHhcccHHHHHHHHHHHHHcC---CCcC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHH
Q 036461 243 IGLFEIHQVERAFKLFDEMQRHG---VAAD----TWAYRTFIDGLCKNGYIVEAVELFRTLRIL-----K--YELDIRAY 308 (369)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~ 308 (369)
..+...|++++|..++++.++.. ..|+ ..+++.++.+|...|++++|+.++++++.. | .+....++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666555321 1111 234555566666666666666666655422 1 01122345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
+.|...|...|++++|..+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666555
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.021 Score=46.46 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=28.5
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
+..++..+...+...|++++|...++++...+ |+...+..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444443444444444444444444432 34334444444444444444444444444443
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.44 E-value=0.0011 Score=42.29 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=45.1
Q ss_pred CcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 267 AADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
+.++..+..+..++...++ .++|..++++..... +.++.....+...+...|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666654443 577777777777665 556667777777777777777777777777665
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.44 E-value=0.00079 Score=46.93 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=70.5
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEAVELFRTLRILKYEL--DIRAYNCLIDGLCKSGRLK 322 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 322 (369)
......+.+.|.+..+.+. ++..+...+..++++++ +.++++.+++.+.+.. .| +...+-.+.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 3456677777877777654 78888888999999988 6779999999998865 34 4667778888899999999
Q ss_pred HHHHHHHhcccCCcccCH
Q 036461 323 IAWELFRSLPRGVLIADV 340 (369)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~ 340 (369)
+|.+.++.+++. .|+.
T Consensus 89 ~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhc--CCCC
Confidence 999999999885 5543
No 220
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.32 E-value=0.0045 Score=42.56 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=73.4
Q ss_pred CcCHhHHHHHHHHHHhcCCh------hHHHHHHHHHHcCCCCCCcccccch-hhHHHHHHHH------HhcCChHHHHHH
Q 036461 16 EPNVFTYNTLINGLCRTGHT------IVALNLFEEMANGNGEFGVVCKPNT-VTYTTIIDGL------CKEGFVDKAKEL 82 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~------~~~~~~~~a~~~ 82 (369)
+-|+.+|-..+...-+.|++ ++.+++|+++...- ||+. ..|...+..+ ...++.++|.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-------Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-------PPDKYGQNESFARIQVRFAELKAIQEPDDARDY 82 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-------CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-------CccccccHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56888999999999999999 89999999998864 5542 2222222222 224678888888
Q ss_pred HHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 83 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
|+.+.+..-. =...|......-.++|+...|.+++.+.+..+..|
T Consensus 83 y~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 83 FQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 8887654222 26666666777777888888888888877765443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.31 E-value=0.02 Score=44.71 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc-CChHH
Q 036461 146 MDEASRLLELMIQIGVR-PNAFVYNTLMDGFCLT-----GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN-KEIEG 218 (369)
Q Consensus 146 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 218 (369)
...|...+++.++.... .+...|..+...|... |+.++|.+.|++....+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35666667777765311 1245677777777774 78888888888887775212366667777777764 78888
Q ss_pred HHHHHHHHHhCCCC--CcHHhH
Q 036461 219 ALSLYSEMLSKGIK--PDVVIY 238 (369)
Q Consensus 219 a~~~~~~~~~~~~~--~~~~~~ 238 (369)
+.+.+++.+...+. |+....
T Consensus 259 a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHH
Confidence 88888888876554 444333
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.25 E-value=0.0046 Score=43.08 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHHhcC---ChHHHHHHHHHhHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036461 58 PNTVTYTTIIDGLCKEG---FVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ 124 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (369)
++..+...+..++++.+ +.++++.+++.+.+.+ .| +...+..+.-+|.+.+++++|.+.++.+++.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44444445555555544 3335555555544432 11 2333334444445555555555555555443
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.23 E-value=3.6e-08 Score=81.19 Aligned_cols=265 Identities=11% Similarity=0.128 Sum_probs=184.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 036461 59 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMN 138 (369)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (369)
.+..|..|..+....+++.+|++.|-+ . -|+..|..++....+.|.+++-.+++...++..-.|. .=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHH
Confidence 467899999999999999988877632 2 2667788899999999999999999988776644443 3457889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHH
Q 036461 139 ELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (369)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (369)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999998877554432 35665667788889999999988888765543 4455566777888877
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 036461 219 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 298 (369)
|.+.-++ ..+..||..+-.+|...+.+.-|...--.++-+ ++-+..++..|...|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 7654222 236678888888888888887766554444422 12334567778888888888888888775
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccC-Cccc------CHHHHHHHHHHHHhcCchHHHH
Q 036461 299 LKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRG-VLIA------DVVTYNIMIHALCADGKMDKAR 360 (369)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 360 (369)
.. ......|+.|.-.|.+- ++++..+.++..-.+ +++. ....|.-++-.|.+-..++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 56777888888888775 456655555544331 1111 2335666666676666666654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.19 E-value=0.0033 Score=41.12 Aligned_cols=74 Identities=12% Similarity=-0.070 Sum_probs=57.1
Q ss_pred CcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 16 EPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 16 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
+.+...+..+...+.+.|++..|+..|+.+.+...+......+...++..+..++.+.|+++.|+..++++.+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34667788899999999999999999999887531100001345677888999999999999999999998874
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.19 E-value=0.032 Score=51.57 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhc
Q 036461 134 NVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKN 213 (369)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (369)
..++..+.+.|.++.|.++.+. +. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555556666665544421 11 0122334556666666654322 3445666666666666
Q ss_pred CChHHHHHHHHHHH
Q 036461 214 KEIEGALSLYSEML 227 (369)
Q Consensus 214 ~~~~~a~~~~~~~~ 227 (369)
++++.|...|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666666543
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.15 E-value=0.0056 Score=41.00 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE---AVELFRTLRILKYEL--DIRAYNCLIDGL 315 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 315 (369)
++...........+.+-+......|. ++..+-..+..++.++.+... ++.+++.+...+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33444445556666666666655543 677777778888888776555 777888777654 23 344555667788
Q ss_pred HcCCCHHHHHHHHHhcccC
Q 036461 316 CKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 316 ~~~g~~~~a~~~~~~~~~~ 334 (369)
.+.|+++.|.+.++.+++.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 8888888888888888774
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.05 E-value=0.074 Score=41.55 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCh
Q 036461 111 WNEAKCLFIEMMDQGVQPN---VVSFNVIMNELCKN-----GKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLT-GRV 181 (369)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 181 (369)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56778888888875 344 45788888888884 99999999999999986433477777888888885 999
Q ss_pred HHHHHHHHHHHhcCCC
Q 036461 182 NRAEELFVSMESMGCK 197 (369)
Q Consensus 182 ~~a~~~~~~~~~~~~~ 197 (369)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999987533
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.04 E-value=0.012 Score=38.35 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHG------VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.+..+...+...++++.|...++...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444555555555555555555544320 1123445555555556666666666666555544
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.043 Score=39.34 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=21.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 036461 176 CLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (369)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (369)
...|+++.|.++.+.+ .+...|..+.......|+++-|...|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554433 13344555555555555555555555443
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.098 Score=48.32 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=71.3
Q ss_pred HHHHHhCCChhHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 137 MNELCKNGKMDEASR-LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
.......+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.+. +. . -.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCC
Confidence 344456788888876 4421 11 122336777888889999998877532 11 1 1234567899
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQ 262 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (369)
++.|.++.+.+ .+...|..+...+.+.++++.|...|.++.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 99999885432 367889999999999999999999998864
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.83 E-value=0.045 Score=37.76 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
.+++++|.++|+.+++.+-.. ...+....+--.+.|++..|.+++.+....+ +.+...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHH
Confidence 356677777777665542222 5555555555666777777777777777655 223344444443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.078 Score=38.00 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=20.8
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIE 120 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (369)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345555555544433 1344455555555555555555555544
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.61 E-value=0.44 Score=44.08 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=63.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHH--HHHHHHHhhcCChH
Q 036461 140 LCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSY--SILINGYCKNKEIE 217 (369)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 217 (369)
+...|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+.... .|....- ..+..+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 334455555555555544421 1111112222223335566666666666555432 2222211 12334455566665
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI-VEAVELFRTL 296 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 296 (369)
....+++.+.... ..+......+..++...|+.+.+.+++..+.+.+ .|....-..+.-+....|+. .++...+..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666655431 1122222233333333444444555554444332 22222222222233333332 4455555555
Q ss_pred H
Q 036461 297 R 297 (369)
Q Consensus 297 ~ 297 (369)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 4
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.39 E-value=0.034 Score=37.27 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHH---HHHHHHHhHhCCCC-CCHHhHHHHHHHHHhcCC
Q 036461 35 TIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLKMKDENIN-PNVVTYNSLIHGFCYAND 110 (369)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 110 (369)
...+.+-|+.....+ +++..+-..+..++.+..+... ++.+++.+.+.+.+ ........|.-++.+.|+
T Consensus 17 l~~~~~~y~~e~~~~-------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccC-------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 334444444444433 3555666666666666655444 66666666554211 123334445556666666
Q ss_pred HHHHHHHHHHHHhc
Q 036461 111 WNEAKCLFIEMMDQ 124 (369)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (369)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.37 E-value=0.00074 Score=56.35 Aligned_cols=83 Identities=11% Similarity=0.180 Sum_probs=58.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh
Q 036461 18 NVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 97 (369)
Q Consensus 18 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (369)
.+.+|..|..+..+.+++.+|++.|-+ ..|+..|..++....+.|.+++-...+...++.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc
Confidence 566788888888888888888776532 2456778888888888888888888776665542 24444
Q ss_pred HHHHHHHHHhcCCHHHH
Q 036461 98 YNSLIHGFCYANDWNEA 114 (369)
Q Consensus 98 ~~~l~~~~~~~~~~~~a 114 (369)
=+.|+.+|++.++..+-
T Consensus 119 DteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 119 ETELIFALAKTNRLAEL 135 (624)
T ss_dssp THHHHHHHHTSCSSSTT
T ss_pred HHHHHHHHHhhCcHHHH
Confidence 45677788877765543
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.09 E-value=0.89 Score=42.15 Aligned_cols=261 Identities=11% Similarity=0.024 Sum_probs=139.9
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCChhhHHHHHH
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPNV--VTYNSLIHGFCYANDWNEAKCLFIEMMDQGV-------QPNVVSFNVIMN 138 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 138 (369)
-+....|+.++++.++......+...+. ..=..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455678888888887766542111122 2222334445555655567777776654321 011111122222
Q ss_pred HHHhCCC-hhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC
Q 036461 139 ELCKNGK-MDEASRLLELMIQIGVRPNA--FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (369)
Q Consensus 139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (369)
++...|. -+++...+..+..... +.. ..-..+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2455566655554321 111 122234445566778777777777766542 2233333344444557788
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 036461 216 IEGALSLYSEMLSKGIKPDVVIY--NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELF 293 (369)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 293 (369)
.+.+..+++.+... ..|....- ..+..+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888887764 22222222 234556777888887777888887642 223333333333445567777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHhccc
Q 036461 294 RTLRILKYELDIRAYNCLIDGLCKSGRL-KIAWELFRSLPR 333 (369)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 333 (369)
+.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665543 44444444444455555553 567778887765
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.089 Score=47.44 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=25.8
Q ss_pred HHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036461 314 GLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLD 365 (369)
Q Consensus 314 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (369)
.|...|+++-|+.+-++....- +-+-.+|..|..+|...|+++.|+-.++.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3444555555555555554431 11344555555555555555555555444
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.11 Score=46.99 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=42.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 277 IDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
..-|...|+++-|+.+-++..... |.+..+|..|..+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344566788888888888887764 5567788888888888888888888887764
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.37 E-value=0.08 Score=44.02 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCChhhHHH
Q 036461 61 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD-----QGVQPNVVSFNV 135 (369)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 135 (369)
.+...++..+...|++++++..+..+... .|.+...|..++.++.+.|+..+|++.|+++.. .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45666777888888888888888887765 466888888888999999999999888887754 388887776543
Q ss_pred H
Q 036461 136 I 136 (369)
Q Consensus 136 l 136 (369)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.30 E-value=0.4 Score=32.48 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=73.3
Q ss_pred hcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHH
Q 036461 72 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASR 151 (369)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (369)
-.|..++..++..+.... .+..-||-++--....-+-+-..++++.+-+ -.|.. ..|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHHH
Confidence 356666666666666553 2555555555555555554444444444422 12221 1223333333
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 036461 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (369)
.+-.+ + .+...+...+..+...|.-++-.+++..+.... +|++...-.+..+|.+.|+..++.+++.++-++|+
T Consensus 83 C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32222 1 123344455566666677777777666654322 55666666666777777777777777777666664
Q ss_pred C
Q 036461 232 K 232 (369)
Q Consensus 232 ~ 232 (369)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.28 E-value=0.4 Score=32.44 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCc
Q 036461 269 DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVL 336 (369)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 336 (369)
+...+...+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445555566666667666666666665332 256666666677777777777777777766666554
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.17 E-value=1.3 Score=42.70 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (369)
-|..++..+-+.+.++.+.++-...++...+.+ ...|..+.+.+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 456677777777777777777766665432212 12466677777888888888777777765532 234455555
Q ss_pred HHHhhcC------------ChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhcccHHHHH-HHHHHHHH
Q 036461 208 NGYCKNK------------EIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMQR 263 (369)
Q Consensus 208 ~~~~~~~------------~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 263 (369)
...+..| ..++..+++..-.+. .+...+.-|..|-..+...|++.+|- .+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555443 344444554433221 11112233555555556677776544 44455443
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.06 E-value=0.15 Score=32.27 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
+.++.++.+...+.-|++....+.+++|.+.+++..|+++|+-+...- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 355677778888889999999999999999999999999999988754 233455766654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.02 E-value=0.27 Score=33.13 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=54.3
Q ss_pred CCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC
Q 036461 265 GVAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD 339 (369)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 339 (369)
+..|+..+--.+..++.++.+ ..+++.+++.+.+.+.......+-.+.-++.+.|+++.|.+..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 445777777778888887765 4568888888887652234566777788899999999999999998875 454
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.95 E-value=0.19 Score=35.37 Aligned_cols=61 Identities=8% Similarity=-0.118 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHcC-CCcC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036461 237 IYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAAD-------TWAYRTFIDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 297 (369)
++-.-++.+...+.++.|+-+.+.+.... ..|+ ..++..+..++...|++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445666777788888877777654321 1233 1255667777788888888888888764
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.59 E-value=1.9 Score=41.67 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--ch--HHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCK--HN--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (369)
.-|..++..+.+.+.++.+.++-....+...+ ++ ...|..+...+...|++++|...+-.+...... ...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 45777888899999999999888877654322 22 225788899999999999999999888765433 3444555
Q ss_pred HHHHHhc------------ccHHHHHHHHHHHHH-c-CCCcCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHc
Q 036461 242 FIGLFEI------------HQVERAFKLFDEMQR-H-GVAADTWAYRTFIDGLCKNGYIVEAV-ELFRTLRIL 299 (369)
Q Consensus 242 ~~~~~~~------------~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 299 (369)
+...+.. |..++..+++..--+ . .+...+.-|..|-..+...|++.+|- -+|+.+.+.
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 5544433 445666666654322 1 11111233455555556667766554 456666543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.54 E-value=0.3 Score=40.58 Aligned_cols=55 Identities=5% Similarity=0.023 Sum_probs=27.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTL 296 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 296 (369)
++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555544432 334445555555555555555555555544
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.36 E-value=0.69 Score=31.64 Aligned_cols=72 Identities=15% Similarity=0.032 Sum_probs=55.0
Q ss_pred CCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCcccC
Q 036461 266 VAADTWAYRTFIDGLCKNGY---IVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPRGVLIAD 339 (369)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 339 (369)
..|+..+--.+..++.++.+ ..+++.+++.+...+........-.|.-++.+.|++++|.+..+.+++. .|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 35788888888888888775 4578888888887642234556667778899999999999999999885 454
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.30 E-value=2.7 Score=37.30 Aligned_cols=310 Identities=11% Similarity=0.054 Sum_probs=152.7
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 29 LCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 29 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
..+.|++..+..+...+...- +.|- ..|..+...+ ......+....+.+... .+.....-...+..+.+.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~p------L~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYP------LYPY-LEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTST------THHH-HHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHhhcCCC------cHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhC
Confidence 445678877776655543211 1111 1232222221 12245555554444332 122223334455666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH--HHH
Q 036461 109 NDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR--AEE 186 (369)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~ 186 (369)
+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.... ...
T Consensus 86 ~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 86 EDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLE 159 (618)
T ss_dssp TCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHH
Confidence 777776664432 13344444456666777788777766666665544 2234455666666665554332 222
Q ss_pred HHHHHHhcC-----------CCchHHH-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHH---hHHHHHHHHHhcccH
Q 036461 187 LFVSMESMG-----------CKHNVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV---IYNTLFIGLFEIHQV 251 (369)
Q Consensus 187 ~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 251 (369)
-++.+...+ ++++... ...++..+. ++..+...... ..++.. .+...+.-+ ...+.
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rl-ar~d~ 230 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASV-ARQDA 230 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHH-HHHCH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHH-HhcCH
Confidence 222222222 1111111 111111111 11222211111 111221 111112222 23477
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYR----TFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
+.|...+....+.. ..+..... .++......+...++...+...... ..+.......+....+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888776532 22333222 2333333445355666666654433 34444455555555677999999999
Q ss_pred HHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 328 FRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
|+.|..... .......-+.+++...|+.++|..+|+++.
T Consensus 308 ~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 308 LARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998876422 234444556778888899999999888764
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=2.3 Score=36.05 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCcc--HHH
Q 036461 99 NSLIHGFCYANDWNEAKCLFIEMMDQ--GVQPN---VVSFNVIMNELCKNGKMDEASRLLELMIQ----IGVRPN--AFV 167 (369)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 167 (369)
..|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++..+.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34556666666666666666665432 11100 22344455566666666666666655432 111111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSM 191 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~ 191 (369)
+...+..+...+++.+|.+.|..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344455555566666666555554
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.82 E-value=1 Score=31.82 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccc-------hhhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 036461 19 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPN-------TVTYTTIIDGLCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 19 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (369)
..++..-++.+...|.++.|+-+.+.+..... .+|+ ..++..+..++...+++.+|...|++..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~-----~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSN-----NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-----CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33556668889999999999998887655321 1122 23677888999999999999999999743
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.75 E-value=0.78 Score=29.10 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036461 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLI 312 (369)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (369)
.-+..+-++.+...+..|++......+++|.+.+++..|.++++-++..- .+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455555555556666666666666666666666666666666665432 22233444444
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.56 E-value=1.1 Score=30.23 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=51.8
Q ss_pred CCCCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 036461 230 GIKPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILK 300 (369)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 300 (369)
+..|+..+--.+..++.+..+ ..+++.++..+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 445666666666666666554 55788888888876532345566777888999999999999999998763
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.24 E-value=0.49 Score=31.80 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHH
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIID 68 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (369)
..+-++.+...++-|++......+++|.+.+++..|+++|+-+...- .+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-------~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-------CCchhhHHHHHH
Confidence 45666777778889999999999999999999999999999988764 344556766654
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.39 E-value=1.7 Score=29.30 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036461 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLID 313 (369)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (369)
-+..+-++.+...++.|++......+++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455555666666667777777777777777777777777777766442 233444555443
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.76 E-value=4.1 Score=34.34 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCccHHH--H
Q 036461 96 VTYNSLIHGFCYANDWNEAKCLFIEMMDQ--GVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI---GVRPNAFV--Y 168 (369)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 168 (369)
.++..+...|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35556667777777777777777776653 22223445566666777777777777777665432 22222211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 036461 169 NTLMDGFCLTGRVNRAEELFVSME 192 (369)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~ 192 (369)
..-+..+...+++..|...|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111222345566777766666553
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.57 E-value=4.9 Score=31.05 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
..+.|+.+.++.....-++.. +-|...-..+++.+|-.|+++.|..=++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666655553 345666666666666677777776666666654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.36 E-value=8.3 Score=31.94 Aligned_cols=236 Identities=9% Similarity=-0.059 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhc-CChHHHHHHHHHhHhCCCCCCHHhH
Q 036461 20 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKELFLKMKDENINPNVVTY 98 (369)
Q Consensus 20 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (369)
.+...|...|.+.|+.++..+++.....--..+. -.-.......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS--KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4677889999999999999888887654321000 011234567778777764 3444445555444432100 11223
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCccH
Q 036461 99 ------NSLIHGFCYANDWNEAKCLFIEMMDQGVQPN-----VVSFNVIMNELCKNGKMDEASRLLELMIQIG--VRPNA 165 (369)
Q Consensus 99 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 165 (369)
..++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... +.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2578999999999999999998876411112 2245556678889999999999998876431 22333
Q ss_pred HHHH----HHHHHHH-hcCChHHHHHHHHHHHhc-CC--Cc---hHHHHHHHHHHHhhcCChHHHHHHHH-HHHhCCCCC
Q 036461 166 FVYN----TLMDGFC-LTGRVNRAEELFVSMESM-GC--KH---NVFSYSILINGYCKNKEIEGALSLYS-EMLSKGIKP 233 (369)
Q Consensus 166 ~~~~----~l~~~~~-~~~~~~~a~~~~~~~~~~-~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~ 233 (369)
.... .-+..+. ..+++..|...|-+.... .- .| +...|..+.... .++..+.-.++. .....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCc
Confidence 2221 2233456 789999998887766321 10 11 112232222222 233333222222 211111245
Q ss_pred cHHhHHHHHHHHHhcccHHHHHHHHHHH
Q 036461 234 DVVIYNTLFIGLFEIHQVERAFKLFDEM 261 (369)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (369)
+...+..++.++ ..+++.....++...
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 555566666665 456777666666554
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.23 E-value=6.9 Score=32.96 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCchHHH--H
Q 036461 131 VSFNVIMNELCKNGKMDEASRLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESM---GCKHNVFS--Y 203 (369)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 203 (369)
.+...+...|.+.|+++.|.+.+.++.... ...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367789999999999999999999998752 2334567778899999999999999999988532 22333321 1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhC
Q 036461 204 SILINGYCKNKEIEGALSLYSEMLSK 229 (369)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (369)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12223345678999999888877654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.13 E-value=2.3 Score=32.76 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhC
Q 036461 27 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 89 (369)
Q Consensus 27 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (369)
..+.+.|++++|+.....-++.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556677777777777776665 566677777777777777777777777666553
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.91 E-value=8.9 Score=30.52 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHH----HHHHHHhCCCCCcHHhHHHH
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS----LYSEMLSKGIKPDVVIYNTL 241 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 241 (369)
..|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++-..+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345556666777777777777765432 22344455554444 34455556788888888888
Q ss_pred HHHHHhcccHH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 242 FIGLFEIHQVE-RAFKLFDEMQR----HG--VAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 242 ~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
+..+......+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|...|- .+-..+...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHH
Confidence 87776533221 23445555543 22 22367788888888888888888876553 2212245555555544
Q ss_pred HHcC---CCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHHHHhh
Q 036461 315 LCKS---GRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLFLDME 367 (369)
Q Consensus 315 ~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 367 (369)
+... |...++ +... ...+--|.-.|+...|..+++...
T Consensus 175 w~~~~~~~~~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4433 332221 1111 122223456688888888887664
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.84 E-value=9.4 Score=30.69 Aligned_cols=168 Identities=13% Similarity=0.173 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH----HHHhHhCCCCCCHH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL----FLKMKDENINPNVV 96 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~ 96 (369)
.|.++..-|.+.+++++|++++-.-. ..+.+.|+...|-++ ++...+.++++|..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~ 95 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 45666666666777777666654322 223334444433333 34444556777777
Q ss_pred hHHHHHHHHHhcCCHH-HHHHHHHHHHh----cC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHH
Q 036461 97 TYNSLIHGFCYANDWN-EAKCLFIEMMD----QG--VQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYN 169 (369)
Q Consensus 97 ~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (369)
....++..+.....-+ .=.++++++++ .| ..-+......+...|.+.+++.+|...|- .|..+++..+.
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a 171 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLA 171 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHH
Confidence 7777776666554311 11223333321 12 23466677778888888888888877763 23344445665
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 170 TLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
.++.-+...+... ..+...-..++ .|...++...|..++....+
T Consensus 172 ~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 172 RMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 5554444433211 12222223333 45566788888776665543
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.75 E-value=12 Score=31.74 Aligned_cols=259 Identities=11% Similarity=0.122 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHhHh-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hCC
Q 036461 74 GFVDKAKELFLKMKD-----ENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELC----KNG 144 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 144 (369)
|+++.|++.+..+.+ .+..........++..|...++|+.....+.-+....... ......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 667888877766643 2334456677888899999999999888776665432121 222223333222 222
Q ss_pred ChhH--HHHHHHHHHH--cC-CCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCch---HHHHHHHHHHHh
Q 036461 145 KMDE--ASRLLELMIQ--IG-VRP---NAFVYNTLMDGFCLTGRVNRAEELFVSMESM--GCKHN---VFSYSILINGYC 211 (369)
Q Consensus 145 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 211 (369)
..+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+... +.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 01 111 2334466788899999999999999998532 21111 345667788899
Q ss_pred hcCChHHHHHHHHHHHh----CCCCCcH--HhHHHHHHHHHhcccHHHHHHHHHHHHHc-CCCcCHHHHH----HHHHHH
Q 036461 212 KNKEIEGALSLYSEMLS----KGIKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYR----TFIDGL 280 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~ 280 (369)
..+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++.+. ....+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999988753 2222322 34566677777888999988888777542 1112322222 222222
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHhccc
Q 036461 281 CKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKS--GRLKIAWELFRSLPR 333 (369)
Q Consensus 281 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 333 (369)
.-.+....-..+.........-++...+..++.+|... .+++.....|.....
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 22222222223333333222235677888888888654 457777777766544
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.69 E-value=9.6 Score=30.64 Aligned_cols=49 Identities=12% Similarity=-0.060 Sum_probs=31.5
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 036461 267 AADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSG 319 (369)
Q Consensus 267 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (369)
.-|+.....+...|.+.+++.+|...|- .+..+....+..++.-+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 3467788888888999999888887762 232344456655554444433
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.10 E-value=10 Score=30.23 Aligned_cols=168 Identities=15% Similarity=0.054 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH----HHHHHhcCCCchHHHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEEL----FVSMESMGCKHNVFSYSILI 207 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 207 (369)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ ++.+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444445555555555544432 23345667887666554 55666777888888888888
Q ss_pred HHHhhcCChH-HHHHHHHHHHh----CC--CCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 208 NGYCKNKEIE-GALSLYSEMLS----KG--IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 208 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
..+......+ .-.++++.+++ .| ..-++.....+...|.+.+++.+|...|- .+-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 8776643222 23445555543 22 22366677788888888888888877653 11111344555444433
Q ss_pred HhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Q 036461 281 CKN---GYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLPR 333 (369)
Q Consensus 281 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 333 (369)
... |...++--++- .. +-.|.-.|+...|..+++...+
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------RL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------HH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------HH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 333 33333221111 11 2235567888888888776653
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.42 E-value=6.9 Score=26.79 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=41.9
Q ss_pred CCcHHhHHHHHHHHHhccc---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 036461 232 KPDVVIYNTLFIGLFEIHQ---VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL 299 (369)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 299 (369)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455555555555555443 4466777777766432223444555666777788888888888777766
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.13 E-value=9.3 Score=28.00 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 74 GFVDKAKELFLKMKDENINP-NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
++...+.++|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33456666666665544322 23445555555666666666666666666554444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.09 E-value=12 Score=27.50 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 036461 250 QVERAFKLFDEMQRHGVAAD-TWAYRTFIDGLCKNGYIVEAVELFRTLRILKYEL 303 (369)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 303 (369)
....+..+|..|..+|+... ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35677777777777665433 4456677777777788888888887777766555
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.27 E-value=19 Score=25.00 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH
Q 036461 114 AKCLFIEMMDQGVQPN-VVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA 165 (369)
Q Consensus 114 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (369)
+..+|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5666666665544322 334555556666666666666666666666555543
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.32 E-value=16 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 2 EAAALFMKLRVFGCEP-NVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
++.++|..|...|+-- -...|......+-..|++.+|.++|+...+.+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5788999999988644 34467888888999999999999999999887
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.06 E-value=17 Score=23.04 Aligned_cols=79 Identities=18% Similarity=0.063 Sum_probs=48.5
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAY-RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
....++|..+-+-+...+ +.+.. ..-+..+.+.|++++|..+.+... -||...|.+|. -.+.|--+.+..
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHH
Confidence 345677777777766653 22222 223446778888888877665433 56776666553 346777777777
Q ss_pred HHHhcccCC
Q 036461 327 LFRSLPRGV 335 (369)
Q Consensus 327 ~~~~~~~~~ 335 (369)
-+.++..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 776666554
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.71 E-value=18 Score=23.03 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 036461 248 IHQVERAFKLFDEMQRHGVAADTWAY-RTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWE 326 (369)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 326 (369)
....++|..+-+-+...+ +.+.. ..-+..+.+.|++++|..+.+... -||...|.+|.. .+.|--+.+..
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 445677877777776653 22222 223446778888888887766443 577777766543 46677777777
Q ss_pred HHHhcccCC
Q 036461 327 LFRSLPRGV 335 (369)
Q Consensus 327 ~~~~~~~~~ 335 (369)
-+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 776666554
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.08 E-value=65 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHc
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMAN 47 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 47 (369)
.|- +|--|.|.|++++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 554 56678899999999999877654
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.84 E-value=28 Score=24.58 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHHHHhHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 036461 79 AKELFLKMKDENINP-NVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQP 128 (369)
Q Consensus 79 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (369)
+.++|..|...|+-. -...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555544322 23344445555555555555555555555554444
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.28 E-value=22 Score=22.54 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=2.6
Q ss_pred CCChhHH
Q 036461 143 NGKMDEA 149 (369)
Q Consensus 143 ~~~~~~a 149 (369)
.|++++|
T Consensus 52 rG~Yq~A 58 (115)
T 2uwj_G 52 QGRYQEA 58 (115)
T ss_dssp TTCHHHH
T ss_pred chhHHHH
Confidence 3333333
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.99 E-value=24 Score=22.44 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.5
Q ss_pred hCCChhHHH
Q 036461 142 KNGKMDEAS 150 (369)
Q Consensus 142 ~~~~~~~a~ 150 (369)
..|++++|.
T Consensus 52 NrG~Yq~Al 60 (116)
T 2p58_C 52 NRGDYASAL 60 (116)
T ss_dssp HTTCHHHHH
T ss_pred cchhHHHHH
Confidence 333333333
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.55 E-value=44 Score=25.30 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=43.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHc--CCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRH--GVAA----DTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDG 314 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (369)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 355666777777777777765531 1111 00111122222222222222333333332 2 3445555566666
Q ss_pred HHcCCCHHHHHHHHHhcc
Q 036461 315 LCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 315 ~~~~g~~~~a~~~~~~~~ 332 (369)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777765544
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.25 E-value=39 Score=25.24 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCcc
Q 036461 113 EAKCLFIEMMDQGVQPN-VVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPN 164 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (369)
.+..+|..|...|+--. ...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45556666655544322 23455555566666666666666666666555553
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.57 E-value=42 Score=24.42 Aligned_cols=49 Identities=20% Similarity=0.022 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 036461 268 ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR 320 (369)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (369)
++...-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 34444444444444444432 2222322221 3344444444555554444
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=61.80 E-value=23 Score=26.51 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 1 MEAAALFMKLRVFGCEP-NVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
+++.++|..|...|+-- -...|......+...|++.+|..+|+.-++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35788999999988644 34468888889999999999999999998877
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.93 E-value=86 Score=27.13 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHh
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKM 86 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (369)
...+|.+++.|...+.++.|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 344555555555555555555555554
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.00 E-value=72 Score=26.00 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMA 46 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~ 46 (369)
...+|.-|...++.++|...++.+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566777778888888888888764
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.97 E-value=1.3e+02 Score=28.58 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcC
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNA----FVYNTLMDGFCLTG 179 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 179 (369)
-|..++..+-+.+.++.+.++-+.+++.-.+.|. ..+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5777888888889988888888888765322222 35666666666544
No 284
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=57.76 E-value=53 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=19.1
Q ss_pred hCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 142 KNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
+..+.+.|+-++-+|++.| .|....-..++-+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444444444444444433
No 285
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.73 E-value=39 Score=23.13 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (369)
+-+.+.+.|+++++.= ..++..+...+ .-.|.++++.+.+.+ ...+..|...-+..+...|-+
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~------~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTA------SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTC------TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhC------CCCCHhHHHHHHHHHHHCCcE
Confidence 3455677888777663 44566666667 889999999999877 345666666666666666643
No 286
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=57.71 E-value=12 Score=21.02 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHcCCCcCHhHHHHHHHHH-Hhc
Q 036461 1 MEAAALFMKLRVFGCEPNVFTYNTLINGL-CRT 32 (369)
Q Consensus 1 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~ 32 (369)
++|.+.|.+|++..--++..+|...++.+ ++-
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 57888999987765445667888888887 554
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.10 E-value=44 Score=22.87 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 6 LFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+-+.+.+.|+++++.= ..++..+...+..-.|.++++.+.+.+ ...+..|....+..+...|-
T Consensus 9 ~~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 9 ALETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF------PNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC------TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC------CCCChhhHHHHHHHHHHCCC
Confidence 3445677887776663 456677777788889999999998876 34556666666666666664
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.62 E-value=19 Score=26.71 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=8.7
Q ss_pred HHhcccHHHHHHHHHH
Q 036461 245 LFEIHQVERAFKLFDE 260 (369)
Q Consensus 245 ~~~~~~~~~a~~~~~~ 260 (369)
..+.|+.+-+..+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3455666655555544
No 289
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.41 E-value=18 Score=19.71 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 036461 4 AALFMKLRVFGCEPNVFTYNTLINGLCRTGH--TIVALNLFEEMA 46 (369)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 46 (369)
.+.++.+.+.|+++. ....++.+.|. ++.|++.+.+|.
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 567888899988764 33455666666 999999999885
No 290
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.30 E-value=86 Score=26.00 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhHhC-CCCC---CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChhhH-
Q 036461 60 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP---NVVTYNSLIHGFCYA-NDWNEAKCLFIEMMDQGVQPNVVSF- 133 (369)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 133 (369)
..+...|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+.++... -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 356778888999999999998888876542 1111 233455667766654 334444444444443210 012233
Q ss_pred -----HHHHHHHHhCCChhHHHHHHHHHHHcCCC-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCch
Q 036461 134 -----NVIMNELCKNGKMDEASRLLELMIQIGVR-----PNAFVYNTLMDGFCLTGRVNRAEELFVSMESMG----CKHN 199 (369)
Q Consensus 134 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 199 (369)
..++..|...|++.+|.+++..+.+.-.. .-..++..-++.|...+++.++...+....... .+|.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 14677788888888888777777653111 112345555677777888888888877764321 1222
Q ss_pred HHHH--HHHHHHHh-hcCChHHHHHHHHHHH
Q 036461 200 VFSY--SILINGYC-KNKEIEGALSLYSEML 227 (369)
Q Consensus 200 ~~~~--~~l~~~~~-~~~~~~~a~~~~~~~~ 227 (369)
.... ..-...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 11223345 6777888777776654
No 291
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.24 E-value=56 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGF 175 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (369)
..+.+.|+-++-+|++.|-.|....-..++-+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555444433333333333
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.08 E-value=82 Score=25.70 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHhcccCCcccCHHHHHHHHHHH
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR--LKIAWELFRSLPRGVLIADVVTYNIMIHAL 350 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (369)
...++.-|...|+.++|.+.++++..-. .....+...+..++-+.++ .+....++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4667778888888888888888775211 1122333444445554333 345667777777766554444444444444
Q ss_pred Hh
Q 036461 351 CA 352 (369)
Q Consensus 351 ~~ 352 (369)
..
T Consensus 299 ~~ 300 (358)
T 3eiq_C 299 NE 300 (358)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.76 E-value=49 Score=22.99 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=5.9
Q ss_pred hcccHHHHHHHHHHHH
Q 036461 247 EIHQVERAFKLFDEMQ 262 (369)
Q Consensus 247 ~~~~~~~a~~~~~~~~ 262 (369)
..|++.+|..++..-+
T Consensus 113 ~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 113 AQGELQHASAVLQRGI 128 (152)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3333333333333333
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.82 E-value=46 Score=22.43 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=42.3
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcC-ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (369)
+.+.+.|.++++.= ..++..+...+ ..-.|.++++.+.+.+ ...+..|...-+..+...|-+
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAG------EDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHCCcE
Confidence 34677887776663 45666777666 7889999999998876 345666666666666666543
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.53 E-value=1.1e+02 Score=26.46 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCh--hh-HHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 036461 92 NPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQ-GVQPNV--VS-FNVIMNELCKNGKMDEASRLLELMIQIG 160 (369)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (369)
.-....+|.+++.|...+.++.|..+..+..-- ...++. .. +..+...+.-.+++.+|.+.+..+.+.-
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 335778899999999999999999999987411 001111 12 2345677888999999999999988753
No 296
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.26 E-value=48 Score=22.83 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHhcC-ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh
Q 036461 7 FMKLRVFGCEPNVFTYNTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76 (369)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (369)
.+.|.+.|+++++.= ..++..+...+ ..-.|.++++.+.+.+ ...+..|...-+..+...|-+
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~------~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLG------EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC------CCCCHHHHHHHHHHHHHCCcE
Confidence 345777888777663 44566666666 7888999999998876 345666666667777776644
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.04 E-value=53 Score=23.04 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=44.1
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcC--CCCCCcccccchhhHHHHHHHHHhcCChH
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANG--NGEFGVVCKPNTVTYTTIIDGLCKEGFVD 77 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (369)
+.+.+.|.++++. -..+++.+...++.-.|.++++.+.+. + ...+..|...-+..+...|-..
T Consensus 22 ~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~------~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 22 KILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD------LNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG------GCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCEE
Confidence 3456678777665 456677788888888999999999876 5 3455666666666777766443
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=51.76 E-value=85 Score=26.66 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=70.8
Q ss_pred cCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 036461 73 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRL 152 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (369)
..+.+-|.++- .+.|++--...|..-...+...|++++|.++-..... |+--+..|.+.+-..-...|...-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 46677666554 3445665666677777888889999999888776544 3344666665555444445666667777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 036461 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFV 189 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (369)
|..+.+.| ..+..--.-+++.-...|+.+-..+++.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 77777776 3454444445566666666665555544
No 299
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=50.78 E-value=73 Score=23.53 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=18.0
Q ss_pred CCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 143 NGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
..+.+.|+-++-+|++.|-.|....-..++-+....|
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555555555566655554444443343444433333
No 300
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.58 E-value=44 Score=20.97 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHH
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 82 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (369)
...++|.++++.+..+| +.+|..++.++...|+..-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG----------~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----------SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----------TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----------hHHHHHHHHHHHHcCcHHHHHHH
Confidence 46889999999998876 47888999998877776665443
No 301
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=50.53 E-value=34 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHhcccC
Q 036461 286 IVEAVELFRTLRILKYELDIRAY-----NCLIDGLCKSGRLKIAWELFRSLPRG 334 (369)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~ 334 (369)
++.|+.+|+.+.... ++-...- -..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~-~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEH-DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 667777777766442 1111111 12334577888888888888876654
No 302
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=50.40 E-value=20 Score=22.52 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHH
Q 036461 2 EAAALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVAL 39 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 39 (369)
+|.++++.+.+.| +.+|..++.++...|+..-|.
T Consensus 55 ~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 55 QARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 5777788777665 467788888887667665553
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.55 E-value=1.2e+02 Score=25.66 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=33.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHhCCCC
Q 036461 177 LTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE-----IEGALSLYSEMLSKGIK 232 (369)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 232 (369)
+.++.+.|+.++.+|...|..|....-..+..+.-.-|. ...|...++....-|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456788888888888887765554444444444444442 23455556655555543
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.63 E-value=1.5e+02 Score=26.47 Aligned_cols=179 Identities=9% Similarity=-0.043 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHhcC-CCchHH--HHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHH
Q 036461 179 GRVNRAEELFVSMESMG-CKHNVF--SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 255 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (369)
.+.+.|...+....... +.+... ....+.......+...++...+....... .+.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 36778888887775432 222211 12223333344453455566666554432 23333344444555678899988
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCCC-------C---HH-----HH
Q 036461 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRIL------------KYEL-------D---IR-----AY 308 (369)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~~ 308 (369)
..|..|.... .......--+..++...|+.++|..+|+.+... |.++ + .. ..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 8888776532 123444455667777888888888888876431 2111 0 00 01
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcccCCcccCHHHHHHHHHHHHhcCchHHHHHHH
Q 036461 309 NCLIDGLCKSGRLKIAWELFRSLPRGVLIADVVTYNIMIHALCADGKMDKARDLF 363 (369)
Q Consensus 309 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (369)
...+..+...|....|...+..+.+. . +......+.......|.++.++...
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 12234566677778887777776653 1 2333334444455566666655443
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.57 E-value=48 Score=25.31 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=22.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHH
Q 036461 282 KNGYIVEAVELFRTLRILKYELDIRA--YNCLIDGLCKSGRLKIAWELFR 329 (369)
Q Consensus 282 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 329 (369)
..|+......+.+.+.+.|..++... -...+...+..|..+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444455555555554443211 1122333445566666655555
No 306
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.22 E-value=42 Score=22.08 Aligned_cols=45 Identities=9% Similarity=-0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
-+|+.+....+.|++..--.-+..+...+++..|..+.-.+....
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 356777776665555544445556778899999999998887643
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.96 E-value=1.3e+02 Score=25.53 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 036461 33 GHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWN 112 (369)
Q Consensus 33 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (369)
.+.+-|.++..+. + +|--...|..-...+...|++++|.++--..+. |+-.+..|.+.+-..=...|+..
T Consensus 343 ~n~~lA~~lA~R~---~------LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~s 412 (494)
T 1bpo_A 343 QNPDLALRMAVRN---N------LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTS 412 (494)
T ss_dssp CCHHHHHHHHHHT---T------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCC
T ss_pred CCHHHHHHHHHhc---C------CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCC
Confidence 5566555554432 2 233344566666777778888888777666554 35557777766665555556666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 036461 113 EAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLE 154 (369)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (369)
--+.+|..+.+.| ..+..--..+.+.-...|+.+-..+++.
T Consensus 413 plL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 413 PLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 6777777777665 3344333345555566666555554443
No 308
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.82 E-value=96 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 036461 24 TLINGLCRTGHTIVALNLFE 43 (369)
Q Consensus 24 ~l~~~~~~~g~~~~A~~~~~ 43 (369)
+.+...++.|+.+....+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34555667777665554444
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.67 E-value=76 Score=22.29 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCccccc--chhhHHHHHH-H-----HHhcCChHHHHHHHHHhHh
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--NTVTYTTIID-G-----LCKEGFVDKAKELFLKMKD 88 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 88 (369)
.|...+. +...|++-+|-++++.+-... ..+ ....|..||. + ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~-lFn~g~yfeaHEvLEe~W~~~------~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVR-LYNSGEFHESHDCFEDEWYNY------GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHTTTT------CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCCchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444 445599999999999998876 234 4556666766 2 2357899999999988765
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.23 E-value=75 Score=21.85 Aligned_cols=44 Identities=7% Similarity=0.000 Sum_probs=19.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 137 MNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33333333444455555555444333344444444444444443
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.04 E-value=65 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 036461 133 FNVIMNELCKNGKMDEASRLLELMI 157 (369)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (369)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456677777788888877777664
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.72 E-value=98 Score=23.00 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=12.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 036461 278 DGLCKNGYIVEAVELFRTLRI 298 (369)
Q Consensus 278 ~~~~~~g~~~~a~~~~~~~~~ 298 (369)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345666666666666666654
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.91 E-value=50 Score=25.63 Aligned_cols=186 Identities=9% Similarity=-0.009 Sum_probs=88.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh--HHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT--YNSLI 102 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 102 (369)
.+...+..|+.+-+..+++. + ..++...-.+.+...+..|+.+-+..++ +.|..++... -.+.+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L 99 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----G------ALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTAL 99 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----T------GGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHH
T ss_pred HHHHHHHcCCHHHHHHHHhC----C------CCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHH
Confidence 44556667887665555543 3 2222221233455556677776554444 4444443221 11234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 036461 103 HGFCYANDWNEAKCLFIEMMDQGVQPNVV---SFNVIMNELCKNGKMDEASRLLELMIQIGVRP-NAFVYNTLMDGFCLT 178 (369)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 178 (369)
...+..|+.+-+.-+++. |..++.. -+...+...+..|+.+-+ +.+.+.|..+ +...-...+...+..
T Consensus 100 ~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKN 171 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHc
Confidence 445567776655555544 4333321 212334444556665443 4444444332 110223345556677
Q ss_pred CChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCcHHh
Q 036461 179 GRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 237 (369)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (369)
|+.+-+.-+++.-...... +..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 172 g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 172 GHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp TCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred ChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 8888777776654332211 111111112233445554 45555667777666543
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.59 E-value=1.1e+02 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=13.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 036461 172 MDGFCLTGRVNRAEELFVSME 192 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~ 192 (369)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 556666666776666666654
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.09 E-value=84 Score=21.77 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCCC
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIKP 233 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 233 (369)
...++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777778888888888888775221 1122333344444444322 445666777776665443
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.64 E-value=54 Score=19.46 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcC-ChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC
Q 036461 8 MKLRVFGCEPNVFTYNTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF 75 (369)
Q Consensus 8 ~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (369)
+.+.+.|+..++.- ..++..+...+ ..-.+.++++.+.+.+ ...+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~------~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG------EEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC------CCCCHhhHHHHHHHHHHCCC
Confidence 45677887776654 45666666665 6778889999987765 23455666666666666553
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.50 E-value=82 Score=21.49 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=26.5
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+.+.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 334454443321 22333333333 45566666666555444444444444444444443
No 318
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.42 E-value=98 Score=22.36 Aligned_cols=170 Identities=11% Similarity=-0.024 Sum_probs=77.4
Q ss_pred cchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 036461 58 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIM 137 (369)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (369)
++...-...+..+...+..+ +...+..+... ++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444555555555432 23333333332 24444444455555555432 3333333332 23455555555
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCChH
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (369)
.++...++.+. ...+..+.+ .++..+-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 55655555433 333333332 245555555566666666543 3333333332 2444555555556665555 3
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 036461 218 GALSLYSEMLSKGIKPDVVIYNTLFIGLFE 247 (369)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (369)
.+...+..+.+. ++...-...+.++..
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 445555555542 234444444444433
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.48 E-value=52 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=8.1
Q ss_pred HHHHHHcCCCHHHHHH
Q 036461 311 LIDGLCKSGRLKIAWE 326 (369)
Q Consensus 311 l~~~~~~~g~~~~a~~ 326 (369)
....+.+.|++++|++
T Consensus 21 rAe~ll~~gkydeAIe 36 (97)
T 2crb_A 21 RADRLLAAGKYEEAIS 36 (97)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCHHHHHH
Confidence 3444555555555544
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.45 E-value=92 Score=21.79 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=32.7
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCh
Q 036461 122 MDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQI--GVRPNAFVYNTLMDGFCLTGRV 181 (369)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 181 (369)
.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554432 344555555556666677777776665 4444555555555555555543
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.34 E-value=86 Score=21.37 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=27.6
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 33445444332 223344444444455566666666555444444444444444444443
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.75 E-value=1.1e+02 Score=22.43 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=29.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc-----HHHHHHHHHHHHHcCCCc
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ-----VERAFKLFDEMQRHGVAA 268 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 268 (369)
+-.+++.|+-++.+|++.| .|....-..++.+.-..|. ...|...++.....|.+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3456666777777777766 5444444444444444332 233444455555555443
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.73 E-value=2.5e+02 Score=26.64 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCchH----HHHHHHHHHHhhcC
Q 036461 166 FVYNTLMDGFCLTGRVNRAEELFVSMESMGCKHNV----FSYSILINGYCKNK 214 (369)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 214 (369)
.-|..++..+.+.+-++.+.++-+.+.+.--+.|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788899999999999999998888764322222 35666666665443
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.98 E-value=93 Score=21.38 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=17.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK 214 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (369)
+..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333444445555555544332233333333333344333
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.75 E-value=96 Score=21.48 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCC--hHHHHHHHHHhHhCCCCCCH
Q 036461 21 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGF--VDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 21 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 95 (369)
....++.-|...|+.++|...++++.... .. ...+...+..++-+.++ .+.+..++..+...++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~------f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH------FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG------GH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc------ch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34667788888888888888888875311 00 11222333333333222 34566666666655544333
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.49 E-value=1.8e+02 Score=24.57 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc-----HHHHHHHHHHHHHcC
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ-----VERAFKLFDEMQRHG 265 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 265 (369)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 345677777777777776665554444444444433332 223444444444444
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.53 E-value=1.2e+02 Score=22.19 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=11.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHH
Q 036461 213 NKEIEGALSLYSEMLSKGIKPDVV 236 (369)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~ 236 (369)
-.+++.|+-++.+|++.|..|...
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~I 43 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYV 43 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344555555555555544444333
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.48 E-value=1.1e+02 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHHc
Q 036461 144 GKMDEASRLLELMIQI 159 (369)
Q Consensus 144 ~~~~~a~~~~~~~~~~ 159 (369)
|++-+|-++++..-..
T Consensus 46 g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN 61 (161)
T ss_dssp TCHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHh
Confidence 5555555555554443
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.44 E-value=99 Score=21.24 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 121 MMDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444443322 23333333333 445566666666555444444444444455544443
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=37.11 E-value=1.2e+02 Score=22.33 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=29.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhccc-----HHHHHHHHHHHHHcCCC
Q 036461 212 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ-----VERAFKLFDEMQRHGVA 267 (369)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 267 (369)
+-.+++.|+-++.+|++.|..|....-..++.+.-..|. ...|...++.....|.+
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666666666655554444444444443332 23444555555555544
No 331
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.71 E-value=1.7e+02 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMA 46 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~ 46 (369)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667888888999999988888764
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.39 E-value=96 Score=20.80 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=27.4
Q ss_pred HhcCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 036461 122 MDQGVQPNVVSFNVIMNELCKNG-KMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (369)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (369)
.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445444332 223344444444 455566666666655544454444444444444443
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.37 E-value=90 Score=20.78 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 138 NELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444455555555555443344444444444444444
No 334
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.43 E-value=77 Score=23.13 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHcCCCcCHh-H-----HHHHHHHHHhcCChhHHHHHHHHHHcCC
Q 036461 2 EAAALFMKLRVFGCEPNVF-T-----YNTLINGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 2 ~A~~~~~~~~~~g~~~~~~-~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
.|+-+|+.+.+.- ++.. . -...+..|.+.|.+++|.++|++.-...
T Consensus 96 SAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 96 SALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 4666776665532 1111 1 1233457899999999999999977654
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.29 E-value=88 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=19.7
Q ss_pred HHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhcC
Q 036461 67 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 109 (369)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (369)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344445555555555555443334444434444444433
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.20 E-value=99 Score=20.61 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhCCCCC
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNK--EIEGALSLYSEMLSKGIKP 233 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 233 (369)
...++.-|...|+.++|.+.++++.... -....+...+..++-+.+ ..+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4556777778888888888888775221 112233344444444433 2355667777777665543
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.52 E-value=90 Score=21.09 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=20.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 036461 136 IMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (369)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (369)
++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444555555555555444444444444444444444
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.42 E-value=78 Score=21.41 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHHHhc
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 108 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (369)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3344444444455555555555544333444433334444333
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.66 E-value=2.7e+02 Score=25.12 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=36.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH---h
Q 036461 206 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC---K 282 (369)
Q Consensus 206 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 282 (369)
...++.-.|+++.|+.++... ...+...+...+..+ |-.... ..+......-..-.+..++..|. +
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 344555678888888876644 123444443333332 222211 11111100001223556666665 4
Q ss_pred CCCHHHHHHHHHHH
Q 036461 283 NGYIVEAVELFRTL 296 (369)
Q Consensus 283 ~g~~~~a~~~~~~~ 296 (369)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56788888777665
No 340
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.16 E-value=71 Score=18.32 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 036461 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL 280 (369)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (369)
+.++..++...-.+.++..+.++.+.| ..+...|..-.+.+
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 334444444444444555555544444 23444444333333
No 341
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.02 E-value=2.5e+02 Score=24.22 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=31.7
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHHH
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 105 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (369)
...+..|...|.++.... |.+...||.|.-.....|+.-+|.-.|-+.... ..|-..+...+...+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~-------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV-------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 344455555555555543 333445555555555555555554444444333 233444444444443
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.54 E-value=1.4e+02 Score=21.22 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhCCCCCCHHh---HHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCC
Q 036461 66 IIDGLCKEGFVDKAKELFLKMKDENINPNVVT---YNSLIHGFCY-ANDWNEAKCLFIEMMDQGVQPN 129 (369)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 129 (369)
.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555555555556666666665554321 1112211111 2233344455555566555443
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.13 E-value=1.1e+02 Score=20.14 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHhHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036461 82 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLFIEMMD 123 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (369)
+|+.+.+..+.|++..-..-+..+...+++..|..+...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544433333334445566777777777777664
No 344
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.08 E-value=29 Score=26.36 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=15.9
Q ss_pred HHHHhcCChHHHHHHHHHhHhCCCCCC
Q 036461 68 DGLCKEGFVDKAKELFLKMKDENINPN 94 (369)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (369)
...++.|+.+....+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344556777776667766655544444
No 345
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.44 E-value=55 Score=21.64 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 036461 132 SFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAEEL 187 (369)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (369)
.|.-.+...+..++.+-|.++++.+.+.| +...|.+++-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34445555566666677777777666655 455566666666666666655544
No 346
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.72 E-value=1.3e+02 Score=20.11 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcC--ChHHHHHHHHHhHhCCCCCCH
Q 036461 22 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEG--FVDKAKELFLKMKDENINPNV 95 (369)
Q Consensus 22 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 95 (369)
...++.-|...|+.++|...++++.... .. .......+..++-+.+ ..+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~------f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH------FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG------GH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc------cH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567788888888888888888875311 00 1122223333333332 134566666666665544333
No 347
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.42 E-value=1.7e+02 Score=21.39 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=29.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCc---------hHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 036461 172 MDGFCLTGRVNRAEELFVSMESMGCKH---------NVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (369)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (369)
+...+..|+.+-+..+++.+.+.|..+ +....+ -+......|+.+-+..+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 344456677776666666666554322 111122 23344556676666666655544
No 348
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.31 E-value=1.2e+02 Score=22.16 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=11.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 036461 277 IDGLCKNGYIVEAVELFRTLR 297 (369)
Q Consensus 277 ~~~~~~~g~~~~a~~~~~~~~ 297 (369)
+....+.|+.+-+..+++...
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHhhh
Confidence 334456677666655555433
No 349
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.85 E-value=53 Score=18.37 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=18.3
Q ss_pred cCChhHHHHHHHHHHcCCCCCCcccccch
Q 036461 32 TGHTIVALNLFEEMANGNGEFGVVCKPNT 60 (369)
Q Consensus 32 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 60 (369)
.-+++.|+..|..+...+. +||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~-----IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGE-----IPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTC-----SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCC-----CCHHH
Confidence 4588999999999887653 56654
No 350
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.32 E-value=68 Score=17.93 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=9.8
Q ss_pred cCChHHHHHHHHHhHhCCC
Q 036461 73 EGFVDKAKELFLKMKDENI 91 (369)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~ 91 (369)
.|+.+.|+..+-+|...+.
T Consensus 36 ~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHcCcCCCC
Confidence 4555555555555544333
No 351
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.20 E-value=1.2e+02 Score=18.65 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHH
Q 036461 5 ALFMKLRVFGCEPNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKA 79 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (369)
.+++.+.+.|+ -+..-+..+-. .....++|..+++.+..+| +.+|..+..++...+...-|
T Consensus 26 ~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----------~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----------NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHcCHHHHH
Confidence 45555665553 33333333332 2456677888888877655 56777777777776654433
No 352
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.00 E-value=1.8e+02 Score=20.68 Aligned_cols=60 Identities=18% Similarity=0.032 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 036461 268 ADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 268 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
++...-...+.++...++.+ +...+..+.. .++..+-...+.++...|. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34444444555555554432 2333333322 3445555555555555544 23334444433
No 353
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.72 E-value=61 Score=21.42 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 036461 272 AYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGRLKIAWEL 327 (369)
Q Consensus 272 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 327 (369)
.|.-.|...+.+++.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 44556666677888888888888888755 677788888888887788877665
No 354
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.83 E-value=1.5e+02 Score=20.98 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=65.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCChHHHHHHHHHhHhCCCCCCHHhHHHHHHH
Q 036461 25 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 104 (369)
Q Consensus 25 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (369)
.+...+..|+.+-+.-++ +.+... -..+....+ .+...+..|+.+-+..+++.-...-...+..-. +.+..
T Consensus 42 ~L~~A~~~~~~~~v~~Ll----~~g~~~---~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~ 112 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALI----DRGADI---NLQNSISDS-PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIP 112 (201)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCT---TCCCTTSCC-HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC-CSHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCC---CCCCCCCCC-HHHHHHHcCCHHHHHHHHhccCcccccccCCCC-cHHHH
Confidence 444455677765444444 434110 012222222 334445667777666665442111001111111 22344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcCChH
Q 036461 105 FCYANDWNEAKCLFIEMMDQGVQPNVVSFNVIMNELCKNGKMDEASRLLELMIQIGVRPNAFVY--NTLMDGFCLTGRVN 182 (369)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 182 (369)
.+..|+.+-+..+++.-...-...+..-.+.+..+.........-.++.+.+.+.|..++.... ..-+......|+.+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 192 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHh
Confidence 5566777665555544211001122223333443433333234446667777777655542211 11233444556655
Q ss_pred HHHH
Q 036461 183 RAEE 186 (369)
Q Consensus 183 ~a~~ 186 (369)
-+.-
T Consensus 193 ~~~~ 196 (201)
T 3hra_A 193 ISKI 196 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 355
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.56 E-value=1.4e+02 Score=18.86 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC
Q 036461 3 AAALFMKLRVFGCEPNVFTYNTLINGLCRTGH 34 (369)
Q Consensus 3 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 34 (369)
|.++.+++...|+.|+..+...++..|...+-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 56788899999999999999999999888774
No 356
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.32 E-value=2e+02 Score=23.83 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCcCHhH--HHHHHHHHHhcCChhHHHHHHH
Q 036461 5 ALFMKLRVFGCEPNVFT--YNTLINGLCRTGHTIVALNLFE 43 (369)
Q Consensus 5 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 43 (369)
++++.+.+.|..|+... ..+.+...+..|+.+-+.-+++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 45566666665444321 1233444455666554444443
No 357
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=23.96 E-value=70 Score=15.23 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=14.6
Q ss_pred HHHHHHhcCchHHHHHHHHHhhc
Q 036461 346 MIHALCADGKMDKARDLFLDMEA 368 (369)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~m~~ 368 (369)
.+.-|.+.|+.++|..+-++|..
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 34556666777777776666553
No 358
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.92 E-value=1.9e+02 Score=24.53 Aligned_cols=28 Identities=4% Similarity=0.054 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhCC
Q 036461 63 YTTIIDGLCKEGFVDKAKELFLKMKDEN 90 (369)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (369)
.+.+...|.+.++.+.+..+++.+...+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~ 206 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKS 206 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 3455555666666666666665554443
No 359
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.73 E-value=62 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=14.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc
Q 036461 310 CLIDGLCKSGRLKIAWELFRSLP 332 (369)
Q Consensus 310 ~l~~~~~~~g~~~~a~~~~~~~~ 332 (369)
.+++-|+..|+++.|..+|+.+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 34555666666666666666554
No 360
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.59 E-value=89 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=23.9
Q ss_pred CCCcCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036461 14 GCEPNVFTYNTLINGLCRTGHTIVALNLFEEMA 46 (369)
Q Consensus 14 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 46 (369)
++||++.+|+-+.+.+-+..=..++..+...+-
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999998887766655566666665544
No 361
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.57 E-value=93 Score=22.16 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=42.1
Q ss_pred cCHhHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHhcCCh
Q 036461 17 PNVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPNTVTYTTIIDGLCKEGFV 76 (369)
Q Consensus 17 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (369)
|....++.++..++...-++.++-.+.++...+ ..+..+|..-++.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-------~I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-------TIPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999999988 56777887777777765433
No 362
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.37 E-value=2.4e+02 Score=20.95 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 036461 175 FCLTGRVNRAEELFVSMESMG 195 (369)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~ 195 (369)
.++.|+.+....+++.+...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 344555555555555444443
No 363
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=22.16 E-value=1.1e+02 Score=18.90 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=5.7
Q ss_pred HHHHHHHHcCC
Q 036461 39 LNLFEEMANGN 49 (369)
Q Consensus 39 ~~~~~~~~~~~ 49 (369)
.++|..+.+.+
T Consensus 43 ~dlf~~Le~~~ 53 (91)
T 1a1w_A 43 LDLFSMLLEQN 53 (91)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 55555555444
No 364
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.12 E-value=3.1e+02 Score=21.71 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCCC
Q 036461 168 YNTLMDGFCLTGRVNRAEELFVSMESMGCKHNVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIKP 233 (369)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 233 (369)
...++.-|...|+.++|.+.++++.... -....+...+..+.-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4567777888888888888888875321 1122333444444444322 345667777777665543
No 365
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.90 E-value=2.5e+02 Score=20.47 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCC
Q 036461 26 INGLCRTGHTIVALNLFEEMANGN 49 (369)
Q Consensus 26 ~~~~~~~g~~~~A~~~~~~~~~~~ 49 (369)
+...+..|+.+....+++.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334455666666666666544433
No 366
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.53 E-value=3.2e+02 Score=21.64 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHhcccCCccc
Q 036461 273 YRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCKSGR--LKIAWELFRSLPRGVLIA 338 (369)
Q Consensus 273 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 338 (369)
...++.-|...|+.++|.+.++++..-. .....+...+..++-+.++ .+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4567888888999999999999886211 1112233334444444333 345567777776555443
No 367
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.41 E-value=4.1e+02 Score=22.85 Aligned_cols=75 Identities=13% Similarity=-0.051 Sum_probs=55.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 036461 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELDIRAYNCLIDGLCK 317 (369)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (369)
|.........++.|...|..+.... |-+...++.+.-.....|+.-+|.-.|-+..... .|-..+...+...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 3444444556788999999988863 4466788999888888898888888877776554 5677777777776654
No 368
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=20.35 E-value=95 Score=22.10 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHHHcCCC
Q 036461 34 HTIVALNLFEEMANGNG 50 (369)
Q Consensus 34 ~~~~A~~~~~~~~~~~~ 50 (369)
..+-|..+++.+..+++
T Consensus 59 E~~HA~kl~~~i~~rgg 75 (176)
T 3ka8_A 59 EREHAEKFMKYQNKRGG 75 (176)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 55778899999888874
No 369
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.28 E-value=3.4e+02 Score=21.78 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=49.9
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHH--HHHHH----HHcCCCHHHHHHHHH
Q 036461 257 LFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAVELFRTLRILKYELD-IRAYN--CLIDG----LCKSGRLKIAWELFR 329 (369)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~--~l~~~----~~~~g~~~~a~~~~~ 329 (369)
++..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|.... ...+- +++.. .....++++...+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445556667777767777777777777788889999998887653322 22222 22221 233577888888887
Q ss_pred hcccC
Q 036461 330 SLPRG 334 (369)
Q Consensus 330 ~~~~~ 334 (369)
.+...
T Consensus 311 ~~p~~ 315 (345)
T 2qfz_A 311 NLPTA 315 (345)
T ss_dssp SCSCT
T ss_pred cCCCc
Confidence 76553
Done!