Query 036462
Match_columns 390
No_of_seqs 293 out of 2006
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2289 Rhomboid family protei 100.0 1.7E-42 3.7E-47 333.2 11.2 277 91-376 36-316 (316)
2 PTZ00101 rhomboid-1 protease; 100.0 5.9E-35 1.3E-39 279.0 25.0 226 87-358 45-273 (278)
3 KOG2290 Rhomboid family protei 100.0 3.7E-34 8.1E-39 279.3 10.9 225 140-385 420-645 (652)
4 PRK10907 intramembrane serine 99.9 1.5E-26 3.1E-31 221.7 19.5 177 94-305 93-270 (276)
5 COG0705 Membrane associated se 99.9 9.6E-24 2.1E-28 197.9 17.6 187 94-307 16-213 (228)
6 PF01694 Rhomboid: Rhomboid fa 99.9 7.4E-24 1.6E-28 184.0 6.8 142 166-307 2-144 (145)
7 KOG2632 Rhomboid family protei 99.7 1.2E-15 2.5E-20 142.4 13.2 176 90-302 10-195 (258)
8 KOG2980 Integral membrane prot 98.9 1.5E-09 3.2E-14 103.4 6.0 175 97-307 117-303 (310)
9 PF08551 DUF1751: Eukaryotic i 98.2 3.5E-06 7.5E-11 69.0 6.1 59 169-227 7-65 (99)
10 PF04511 DER1: Der1-like famil 97.8 8.7E-05 1.9E-09 68.3 8.8 69 159-227 31-103 (197)
11 KOG0858 Predicted membrane pro 97.6 0.00094 2E-08 62.3 12.5 99 92-225 10-112 (239)
12 KOG2890 Predicted membrane pro 97.1 0.00044 9.5E-09 66.4 3.6 132 169-306 66-216 (326)
13 KOG4463 Uncharacterized conser 95.7 0.0084 1.8E-07 56.6 2.9 61 166-227 47-107 (323)
14 KOG2290 Rhomboid family protei 93.3 0.12 2.7E-06 52.4 5.0 85 92-176 197-287 (652)
15 COG5291 Predicted membrane pro 93.2 0.4 8.7E-06 45.2 7.9 47 161-207 51-99 (313)
16 PF11992 DUF3488: Domain of un 81.5 58 0.0013 32.2 15.6 26 280-305 119-144 (325)
17 COG0705 Membrane associated se 71.5 5.2 0.00011 37.1 4.1 76 166-255 136-211 (228)
18 PRK13108 prolipoprotein diacyl 68.7 76 0.0016 33.1 12.2 18 287-304 101-118 (460)
19 PRK10263 DNA translocase FtsK; 64.4 3E+02 0.0065 32.6 18.2 11 236-246 141-151 (1355)
20 COG4769 Predicted membrane pro 64.2 51 0.0011 29.5 8.4 103 203-305 51-163 (181)
21 TIGR02854 spore_II_GA sigma-E 62.2 1.6E+02 0.0034 28.7 12.5 38 183-224 10-47 (288)
22 PF03419 Peptidase_U4: Sporula 59.3 1E+02 0.0022 29.9 10.6 38 183-224 10-47 (293)
23 PF06123 CreD: Inner membrane 56.6 1.4E+02 0.003 30.9 11.5 58 199-256 314-378 (430)
24 COG4452 CreD Inner membrane pr 55.5 1.4E+02 0.0031 30.3 10.7 108 199-312 314-429 (443)
25 KOG3817 Uncharacterized conser 55.1 30 0.00065 34.7 6.0 104 227-344 156-267 (452)
26 PRK11715 inner membrane protei 55.1 1.4E+02 0.0031 30.9 11.3 57 200-256 321-384 (436)
27 PF09527 ATPase_gene1: Putativ 54.4 62 0.0013 23.0 6.2 42 184-225 8-50 (55)
28 PF06679 DUF1180: Protein of u 53.2 69 0.0015 28.6 7.5 15 97-111 100-114 (163)
29 PF11321 DUF3123: Protein of u 48.7 28 0.0006 28.8 3.9 42 4-45 40-81 (113)
30 PRK10263 DNA translocase FtsK; 47.7 81 0.0018 37.1 8.7 14 100-113 27-40 (1355)
31 PF03348 Serinc: Serine incorp 46.3 1.8E+02 0.0038 30.2 10.3 80 267-353 115-200 (429)
32 TIGR00834 ae anion exchange pr 45.3 2.3E+02 0.005 32.2 11.6 66 182-247 375-441 (900)
33 PRK12437 prolipoprotein diacyl 37.1 3.8E+02 0.0083 25.7 12.9 59 233-305 53-111 (269)
34 TIGR02230 ATPase_gene1 F0F1-AT 37.0 1.2E+02 0.0026 24.8 5.9 42 184-225 50-92 (100)
35 PLN02705 beta-amylase 35.2 35 0.00075 36.6 3.2 13 364-376 417-429 (681)
36 PF06123 CreD: Inner membrane 34.3 3.2E+02 0.0068 28.4 9.9 18 206-223 348-365 (430)
37 PF06609 TRI12: Fungal trichot 33.8 6.5E+02 0.014 27.3 16.7 42 185-227 87-128 (599)
38 KOG1172 Na+-independent Cl/HCO 31.4 7.4E+02 0.016 28.1 12.5 125 181-306 365-492 (876)
39 COG1296 AzlC Predicted branche 30.0 4.8E+02 0.011 24.7 10.0 82 213-304 147-229 (238)
40 TIGR00341 conserved hypothetic 29.5 5.1E+02 0.011 25.8 10.1 27 287-313 270-296 (325)
41 PF13829 DUF4191: Domain of un 28.3 1.2E+02 0.0027 28.4 5.3 37 271-307 38-74 (224)
42 PRK11715 inner membrane protei 27.9 4.7E+02 0.01 27.2 9.9 42 206-247 354-400 (436)
43 cd03381 PAP2_glucose_6_phospha 27.2 5.4E+02 0.012 24.3 10.7 17 289-305 136-152 (235)
44 PF14241 DUF4341: Domain of un 26.8 1.4E+02 0.0031 22.0 4.4 34 213-246 6-39 (62)
45 TIGR02185 Trep_Strep conserved 26.3 4.9E+02 0.011 23.5 9.6 18 285-302 80-97 (189)
46 KOG0255 Synaptic vesicle trans 25.7 5E+02 0.011 26.7 10.0 44 183-227 125-168 (521)
47 COG1284 Uncharacterized conser 25.7 6.3E+02 0.014 24.6 13.5 21 286-306 115-135 (289)
48 COG4393 Predicted membrane pro 24.9 7.2E+02 0.016 25.0 13.4 94 207-304 32-137 (405)
49 KOG2289 Rhomboid family protei 24.7 2.1E+02 0.0046 28.4 6.5 23 282-304 246-268 (316)
50 TIGR02235 menA_cyano-plnt 1,4- 24.4 6.5E+02 0.014 24.3 10.5 25 282-306 157-181 (285)
51 COG3105 Uncharacterized protei 24.4 86 0.0019 26.9 3.2 22 285-306 7-28 (138)
52 PF06946 Phage_holin_5: Phage 24.3 2.7E+02 0.0058 22.5 5.8 55 249-303 22-78 (93)
53 PF12273 RCR: Chitin synthesis 23.6 64 0.0014 27.3 2.4 18 334-351 1-18 (130)
54 PF10225 DUF2215: Uncharacteri 23.1 6.5E+02 0.014 23.9 9.9 18 328-345 125-142 (249)
55 PF04018 DUF368: Domain of unk 23.1 6.5E+02 0.014 24.1 9.3 21 286-306 82-102 (257)
56 TIGR00844 c_cpa1 na(+)/h(+) an 22.7 1.1E+03 0.025 26.5 12.5 15 233-247 261-275 (810)
57 PRK07419 1,4-dihydroxy-2-napht 22.5 7E+02 0.015 24.4 9.7 26 281-306 169-194 (304)
58 COG2149 Predicted membrane pro 22.3 1.7E+02 0.0036 24.7 4.4 24 335-358 95-118 (120)
59 PF04632 FUSC: Fusaric acid re 20.6 1E+03 0.023 25.3 12.0 131 173-305 352-487 (650)
60 TIGR01299 synapt_SV2 synaptic 20.4 1.2E+03 0.026 25.9 15.8 38 186-224 212-249 (742)
61 PF05546 She9_MDM33: She9 / Md 20.1 96 0.0021 28.8 2.9 24 92-115 149-172 (207)
No 1
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-42 Score=333.23 Aligned_cols=277 Identities=55% Similarity=0.972 Sum_probs=251.2
Q ss_pred cccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCc----ccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhc
Q 036462 91 KRHFPWMVPGFVVANIVLFVITMYENNCPQTSATG----CLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVT 166 (390)
Q Consensus 91 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~----~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~ 166 (390)
..+..+.+..+...++..|+..++.++++....+. |+....+.+|.+++.++||..+|+..+++.+|++...++.+
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~ 115 (316)
T KOG2289|consen 36 RSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVH 115 (316)
T ss_pred chhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhh
Confidence 46677888999999999998889999998876655 77333899999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHH
Q 036462 167 QHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGA 246 (390)
Q Consensus 167 ~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~ 246 (390)
++|+||++|++|+|+|+.||++||+.|+++|..+|..+|.+|+.++|+++|++|++++.++.++.++|||||++||++|+
T Consensus 116 r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA 195 (316)
T KOG2289|consen 116 RGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGA 195 (316)
T ss_pred hchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccc
Q 036462 247 MLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCV 326 (390)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (390)
+++.++.||..++.+...+..+++++.+++.+|+.+.+|+++|+||++.|..+|++...++++++...... +...
T Consensus 196 ~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~-----~~~~ 270 (316)
T KOG2289|consen 196 HLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLI-----VLRV 270 (316)
T ss_pred HHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEeccce-----eeec
Confidence 99999999999999998888899999999999999999999999999999999999999999988764332 2223
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeee
Q 036462 327 KSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVP 376 (390)
Q Consensus 327 k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~~c~~~~C~p 376 (390)
+.|++.+|.+.|+...+.++.++.+.++.++.+ ++|.||+++.|+|
T Consensus 271 ~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~ 316 (316)
T KOG2289|consen 271 FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP 316 (316)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence 445556667888888888898998888888876 7999999999986
No 2
>PTZ00101 rhomboid-1 protease; Provisional
Probab=100.00 E-value=5.9e-35 Score=279.04 Aligned_cols=226 Identities=27% Similarity=0.428 Sum_probs=174.8
Q ss_pred CCCCcccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhc
Q 036462 87 LSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVT 166 (390)
Q Consensus 87 r~~~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~ 166 (390)
|+.++...+.+|..++++|+++|++..... .+..++|+.+.+.++|+++++.+.
T Consensus 45 r~Fp~f~i~~l~~~Iiii~iivfil~l~~~-------------------------~~~~l~p~~~~L~~~Ga~~~~~i~- 98 (278)
T PTZ00101 45 LIFPHFTWKSFIMAISIIQIIVFIISVSIK-------------------------PADFLTPSDSLLVTLGANVASRIK- 98 (278)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHhc-------------------------ccccCCCCHHHHHHHhCcchhhhh-
Confidence 455778888999999999999999876431 112457888899999999988775
Q ss_pred CCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHH
Q 036462 167 QHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGA 246 (390)
Q Consensus 167 ~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~ 246 (390)
++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++++|+++|++|++++.++.+...++||||++||++|+
T Consensus 99 ~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa 178 (278)
T PTZ00101 99 QGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGI 178 (278)
T ss_pred cCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999888777899999999999999
Q ss_pred HHHhhhhhhHHhhHHHHHHHHHHHHHHHHH--hhcc-CCchhHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCcc
Q 036462 247 MLSELFTNWTIYANKLAALLTLIVIISINL--AVGI-LPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMI 323 (390)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~~~-~p~i~~~aHLgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (390)
+++.++.+|...+.+......++.+.++.+ .... .+++|++||+||+++|+++|+.+.++.+
T Consensus 179 ~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~--------------- 243 (278)
T PTZ00101 179 VTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME--------------- 243 (278)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh---------------
Confidence 998888888765544333322222222222 2222 4789999999999999999998764432
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036462 324 NCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLR 358 (390)
Q Consensus 324 ~~~k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (390)
.|.+ +-+..++.+..++++..++..+.+|-
T Consensus 244 ----~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 273 (278)
T PTZ00101 244 ----NKPS-WYDHMKMASYACLALLAIVPPIVLFA 273 (278)
T ss_pred ----hccc-HHHHHHHHHHHHHHHHHHHhhHheee
Confidence 1212 22345555665666666665555443
No 3
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-34 Score=279.35 Aligned_cols=225 Identities=28% Similarity=0.544 Sum_probs=187.4
Q ss_pred CCCCCCCCCChhHHHh-hcchhhhhhhcCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 036462 140 LKDNPLLGPSSPALDK-MGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGF 218 (390)
Q Consensus 140 ~~~n~~~gps~~~L~~-~Gal~~~~i~~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi 218 (390)
+++|..+.....++.. .|.+..-.--.++|+|||+|++|+|+|++|++..+..++.+.+.+|+..|+.|..++|++||+
T Consensus 420 ~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGi 499 (652)
T KOG2290|consen 420 FHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGI 499 (652)
T ss_pred hhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccc
Confidence 6788888888888877 455444445567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 036462 219 GGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFL 298 (390)
Q Consensus 219 ~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l 298 (390)
.||+++++|.|+.+.||.||+-+|+++++++.++.+|++..+++.++..++...++.. +|++|++||++|++|+++|++
T Consensus 500 tGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~-iGliPWiDN~aHlfG~i~GLl 578 (652)
T KOG2290|consen 500 TGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLC-IGLIPWIDNWAHLFGTIFGLL 578 (652)
T ss_pred cccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887776555544 499999999999999999999
Q ss_pred HHHHHhhccccccccccCCCCCCccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeeeCC
Q 036462 299 LGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTP 378 (390)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~~c~~~~C~p~~ 378 (390)
.++++++..+||..+. ++ ++...+++.+++..++...+|++| .. .-.|+||.|+||+|+.
T Consensus 579 ~s~~~~PYi~Fg~~d~---------------yr--Kr~~ilIs~ivf~~Lla~Lvv~fy-~~--~i~cpWce~ltClP~~ 638 (652)
T KOG2290|consen 579 TSIIFLPYIDFGDFDL---------------YR--KRFYILISQIVFSGLLAILVVVFY-NY--PIDCPWCEHLTCLPFT 638 (652)
T ss_pred HHHHhhccccccchhh---------------hh--hHHHHHHHHHHHHHHHHHHHHhee-ec--ccCCchhhhccccchh
Confidence 9999999998886542 11 223444444444444444344444 33 3489999999999999
Q ss_pred CCCcCCC
Q 036462 379 WWNCKAQ 385 (390)
Q Consensus 379 ~~~c~~~ 385 (390)
.-+|..+
T Consensus 639 ~~~~e~~ 645 (652)
T KOG2290|consen 639 DCFCEKY 645 (652)
T ss_pred hhhhhhh
Confidence 9888764
No 4
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=1.5e-26 Score=221.69 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=127.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhh
Q 036462 94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRL 173 (390)
Q Consensus 94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRl 173 (390)
..++|..++++|++||++.....+ . .+..+... +......+||||+
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~-----------~----------------------~~~~~l~~-~~~~~~~~q~WRl 138 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGD-----------Q----------------------TVMLWLAW-PFDPSLKFELWRY 138 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc-----------H----------------------HHHHHHhc-cccccccCCcHHH
Confidence 456999999999999998765421 0 01111111 1122345999999
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhh
Q 036462 174 LTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFT 253 (390)
Q Consensus 174 lTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~ 253 (390)
+|++|+|.|+.|+++||+.+|.+|..+|+.+|+++++.+|++++++|+++.+++.. ...+|+||+|||++|+.......
T Consensus 139 ~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~ 217 (276)
T PRK10907 139 FTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGER 217 (276)
T ss_pred HhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999888754 56889999999999986543221
Q ss_pred hhHH-hhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462 254 NWTI-YANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 254 ~~~~-~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
.... ...+...+..+++++++.+.-.+.++++|.||++|+++|+++|+...+
T Consensus 218 ~p~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 218 DPQSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 1110 111112222233333332222234689999999999999999987653
No 5
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.91 E-value=9.6e-24 Score=197.85 Aligned_cols=187 Identities=32% Similarity=0.478 Sum_probs=139.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCC---cc
Q 036462 94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQH---QV 170 (390)
Q Consensus 94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~---q~ 170 (390)
.+.++..++++|+++|+...+...... ... ..+....+..+....... |+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 68 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAI------------FLL---------------TFLFRLFGLYPLNLLGALARDQL 68 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHH------------HHH---------------HHhhhHHhhcchhhhccccccch
Confidence 578999999999999999876542100 000 000011111222222212 89
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc--ceechHHHHHHHHHHHH
Q 036462 171 WRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG--ISVGASGALFGLLGAML 248 (390)
Q Consensus 171 wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~--~~vGaSgav~Gllg~~~ 248 (390)
||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.+++.+|+++|+++++....+.+.. +++||||++||++++++
T Consensus 69 w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~ 148 (228)
T COG0705 69 WRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYF 148 (228)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888765 79999999999999997
Q ss_pred HhhhhhhHHhh---HHHHHHHHHHHHHHHHHhhccCC---chhHHHHHHHHHHHHHHHHHHhhcc
Q 036462 249 SELFTNWTIYA---NKLAALLTLIVIISINLAVGILP---KVDNFAHIGGFLSGFLLGFVLLIRP 307 (390)
Q Consensus 249 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~p---~i~~~aHLgG~l~G~l~g~~~~~~~ 307 (390)
........... .+......+.+++..+++.+... ++++.+|++|++.|++++..+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~ 213 (228)
T COG0705 149 LLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKL 213 (228)
T ss_pred HHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 64433322222 33445555666666666665543 7999999999999999998887543
No 6
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.89 E-value=7.4e-24 Score=184.05 Aligned_cols=142 Identities=43% Similarity=0.691 Sum_probs=108.1
Q ss_pred cCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc-ceechHHHHHHHH
Q 036462 166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG-ISVGASGALFGLL 244 (390)
Q Consensus 166 ~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~-~~vGaSgav~Gll 244 (390)
+++||||++|++|+|.|+.|+++|++.++.+|..+|+.+|+++++.+|+++++.++++..++.+.. +.+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 459999999999999999999999999999999999999999999999999999999999888777 8999999999999
Q ss_pred HHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462 245 GAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRP 307 (390)
Q Consensus 245 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~~ 307 (390)
++.+.....+++....+..........+.+.+..+..+++++.+|++|+++|++++..+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~ 144 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP 144 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 998776665543332211111112222334455556899999999999999999999998665
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.65 E-value=1.2e-15 Score=142.38 Aligned_cols=176 Identities=21% Similarity=0.333 Sum_probs=124.0
Q ss_pred CcccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCc
Q 036462 90 FKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQ 169 (390)
Q Consensus 90 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q 169 (390)
.-.+.|.+|.+++.++.++|++..... +... -..+..+..+.|
T Consensus 10 ~~~~~p~~ts~~~~~~~~i~lv~~~~~---------------i~~~----------------------~~l~~~~l~~~q 52 (258)
T KOG2632|consen 10 FWMKIPLLTSIVVVLAILIYLVSFFPG---------------IVEV----------------------LGLPSELLINWQ 52 (258)
T ss_pred ccccchHHHHHHHHHHHHHHHHhccch---------------hhhH----------------------hcCCHHHhhhHH
Confidence 335568899999999999998765321 0000 011233455699
Q ss_pred chhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhHHhhcC-----C----cceechHHH
Q 036462 170 VWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFG-FVRIGFLYVLSGFGGSLTSALFIQ-----E----GISVGASGA 239 (390)
Q Consensus 170 ~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G-~~r~l~lyl~sgi~g~l~~~l~~~-----~----~~~vGaSga 239 (390)
.||++||+++|.+..|+++||+.+|.+|...|+.+| +.+++..+.+-++..+++..+... + ...+|.||.
T Consensus 53 l~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v 132 (258)
T KOG2632|consen 53 LYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGV 132 (258)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHH
Confidence 999999999999999999999999999999999999 888888777777777777655542 1 246999999
Q ss_pred HHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Q 036462 240 LFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFV 302 (390)
Q Consensus 240 v~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~ 302 (390)
.|+.++...+.--........-......+..++.+.+..-+.|+.|+.+|++|+++|+.+++.
T Consensus 133 ~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 133 LFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 999998865432221111111111122333444444444467999999999999999999985
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-09 Score=103.40 Aligned_cols=175 Identities=26% Similarity=0.341 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhhhhh
Q 036462 97 MVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTC 176 (390)
Q Consensus 97 vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRllTs 176 (390)
+++.++++|+++|..|....- ...+..|.. .+| ..+--.|.++++
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~-----------~~~~~~~ml---s~~---------------------~~~t~~w~i~~s 161 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQK-----------QFTMIPWML---SRN---------------------AYKTGCWKIILS 161 (310)
T ss_pred chhHHHHHHHHHHHHHHhcch-----------hhhhhhHHh---hcc---------------------cccccceeEEee
Confidence 889999999999999885420 111222210 011 112335669999
Q ss_pred hhccccHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHhHHhh----cCCcceechHHHHHHHHHHHHHhh
Q 036462 177 IWLHGGVFHVLANMLSLLFIGI-RLEQEFGFVRIGFLYVLSGFGGSLTSALF----IQEGISVGASGALFGLLGAMLSEL 251 (390)
Q Consensus 177 ~FlH~~~~HLl~N~~~l~~~G~-~lE~~~G~~r~l~lyl~sgi~g~l~~~l~----~~~~~~vGaSgav~Gllg~~~~~~ 251 (390)
.|.|.+.+|+-.||+.++.+.. .+-...|...+..+|+.++..|..+...- ...++.+||||++|++++.... +
T Consensus 162 ~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~-l 240 (310)
T KOG2980|consen 162 TFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCT-L 240 (310)
T ss_pred hhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhh-c
Confidence 9999999999999999998888 78888999999999997777776554332 1234789999999999987743 3
Q ss_pred hhhhHH-----hhHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462 252 FTNWTI-----YANKLAALLTLIVIISINLAVGIL--PKVDNFAHIGGFLSGFLLGFVLLIRP 307 (390)
Q Consensus 252 ~~~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~--p~i~~~aHLgG~l~G~l~g~~~~~~~ 307 (390)
+++... +..+..+...+-.++..++....+ ..-|+++|++|.+.|++++.....+.
T Consensus 241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri 303 (310)
T KOG2980|consen 241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI 303 (310)
T ss_pred CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence 443322 122222333333344444433333 45788899999999999998887654
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.19 E-value=3.5e-06 Score=69.00 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=54.3
Q ss_pred cchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF 227 (390)
Q Consensus 169 q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~ 227 (390)
..|+++|+.|++.++..+++|.+.++..|+.+|+.+|++.++...++.++..+++..+.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~ 65 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL 65 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence 68999999999999999999999999999999999999999998888888888776543
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=97.82 E-value=8.7e-05 Score=68.26 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=51.4
Q ss_pred hhhhhhhcCCcchhhhhhhhccccH-HHHHHHHHHHHHHHHHHHHhh-h-h-HHHHHHHHHHHHHHHHhHHhh
Q 036462 159 LTVAKVVTQHQVWRLLTCIWLHGGV-FHVLANMLSLLFIGIRLEQEF-G-F-VRIGFLYVLSGFGGSLTSALF 227 (390)
Q Consensus 159 l~~~~i~~~~q~wRllTs~FlH~~~-~HLl~N~~~l~~~G~~lE~~~-G-~-~r~l~lyl~sgi~g~l~~~l~ 227 (390)
++++.+.++.|+||++|+.|.-++. .++++|++.++..+..+|+.. . + ..++...+.+++.-.+++.+.
T Consensus 31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~ 103 (197)
T PF04511_consen 31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI 103 (197)
T ss_pred ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777789999999999986554 799999999999999999983 2 2 456666555555555555433
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=97.63 E-value=0.00094 Score=62.31 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=72.8
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcch
Q 036462 92 RHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVW 171 (390)
Q Consensus 92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~w 171 (390)
...|++|-....+++++=++....- +.|. +--++++.+.++.|+|
T Consensus 10 ~~iPpVTR~~~~~~v~tt~~~~l~l--------------------IsP~---------------~l~~~p~Lv~kk~QiW 54 (239)
T KOG0858|consen 10 LQIPPVTRYYTTACVVTTLLVRLDL--------------------ISPF---------------QLYLNPELVFKKFQIW 54 (239)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhcc--------------------cCch---------------heEecHHHHHhHhHHH
Confidence 3468899988888887777665321 1111 1134667889999999
Q ss_pred hhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhHH
Q 036462 172 RLLTCIWLHGG-VFHVLANMLSLLFIGIRLEQEF---GFVRIGFLYVLSGFGGSLTSA 225 (390)
Q Consensus 172 RllTs~FlH~~-~~HLl~N~~~l~~~G~~lE~~~---G~~r~l~lyl~sgi~g~l~~~ 225 (390)
|++|+.+.-.. -+|.++||+.++--++.+|+-. -+..|+.+.+.+++.-.+.+.
T Consensus 55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999998865 6999999999999999999754 236777777777776554443
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.08 E-value=0.00044 Score=66.38 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=88.3
Q ss_pred cchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHH--------hhcC----Ccceech
Q 036462 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSA--------LFIQ----EGISVGA 236 (390)
Q Consensus 169 q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~--------l~~~----~~~~vGa 236 (390)
..|+++|+.|+-.+.+-.++|++.+.+-|..+|+.+|+..++..|.+.-..-+++.. ++.. +.+-.|.
T Consensus 66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~ 145 (326)
T KOG2890|consen 66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT 145 (326)
T ss_pred hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence 689999999999999999999999999999999999999998877654443333221 2211 1267899
Q ss_pred HHHHHHHHHHHHHhhhhhhHHhhHHHHHH-------HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhc
Q 036462 237 SGALFGLLGAMLSELFTNWTIYANKLAAL-------LTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 237 Sgav~Gllg~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~ 306 (390)
.|.+-|++.++ -.+++......-+...+ ..++..+++.+ -....++.+.-+.+|.+.++.+++.
T Consensus 146 ~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-----~~f~~f~~l~s~~~g~~~sWtYLRf 216 (326)
T KOG2890|consen 146 TGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSI-----ITFLVFASLPSITFGVLVSWTYLRF 216 (326)
T ss_pred hHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhhhhhhhhee
Confidence 99999999665 23333221111111111 11111111111 2346678888899999999999864
No 13
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0084 Score=56.62 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=51.5
Q ss_pred cCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462 166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF 227 (390)
Q Consensus 166 ~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~ 227 (390)
...|+||++.+.|...+--.+++-++.++.+ +.+||.+|+.||..+-+.+++.+.++..++
T Consensus 47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il 107 (323)
T KOG4463|consen 47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL 107 (323)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence 3489999999999999988888877666554 889999999999998888888887776554
No 14
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=93.26 E-value=0.12 Score=52.42 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=56.5
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhcCCCC-C-CcCccccccccccccccc----CCCCCCCCCChhHHHhhcchhhhhhh
Q 036462 92 RHFPWMVPGFVVANIVLFVITMYENNCPQ-T-SATGCLGAKFLGRFSFLP----LKDNPLLGPSSPALDKMGALTVAKVV 165 (390)
Q Consensus 92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~p----~~~n~~~gps~~~L~~~Gal~~~~i~ 165 (390)
...||+|+.+..+++.|-++.+...+..+ . +..+..+.-+-+.+..+. -++|+++||+.+.|.++||++.+-+.
T Consensus 197 d~RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPCmr 276 (652)
T KOG2290|consen 197 DHRPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETVGDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPCMR 276 (652)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhHHHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChhhh
Confidence 45689999999888888777655433221 1 111111010111111111 36899999999999999999999999
Q ss_pred cCCcchhhhhh
Q 036462 166 TQHQVWRLLTC 176 (390)
Q Consensus 166 ~~~q~wRllTs 176 (390)
++.|.|..+-.
T Consensus 277 rd~q~~~~I~~ 287 (652)
T KOG2290|consen 277 RDPQVWSAIEE 287 (652)
T ss_pred cChHHHHHHHH
Confidence 99999988754
No 15
>COG5291 Predicted membrane protein [Function unknown]
Probab=93.21 E-value=0.4 Score=45.15 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=37.3
Q ss_pred hhhhhcCCcchhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHh-hhhH
Q 036462 161 VAKVVTQHQVWRLLTCIWLHGG-VFHVLANMLSLLFIGIRLEQE-FGFV 207 (390)
Q Consensus 161 ~~~i~~~~q~wRllTs~FlH~~-~~HLl~N~~~l~~~G~~lE~~-~G~~ 207 (390)
.+...++.||||++|+...-++ -+..++|++.++--.+++|+- +|+.
T Consensus 51 ~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~ 99 (313)
T COG5291 51 SPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS 99 (313)
T ss_pred chhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence 3455667999999998766654 578999999999999999974 4443
No 16
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=81.54 E-value=58 Score=32.18 Aligned_cols=26 Identities=23% Similarity=0.052 Sum_probs=18.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462 280 ILPKVDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 280 ~~p~i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
+..++-...++...+...+++++.+.
T Consensus 119 ~~qs~~~~l~~ll~~~~~~~~L~~l~ 144 (325)
T PF11992_consen 119 FSQSLLFALYLLLFLVLLLAALVLLH 144 (325)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777788888888777777763
No 17
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=71.49 E-value=5.2 Score=37.12 Aligned_cols=76 Identities=25% Similarity=0.185 Sum_probs=54.2
Q ss_pred cCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHH
Q 036462 166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLG 245 (390)
Q Consensus 166 ~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg 245 (390)
..|++|+++.+.++|....|...+... ..+.+.+++...+..+++....... ..++.++-+.|+++
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~-~~va~~aHl~G~i~ 201 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG-PSVAWSAHLGGLIG 201 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 347888888888888887777766554 4556677777777777776655433 67899999999998
Q ss_pred HHHHhhhhhh
Q 036462 246 AMLSELFTNW 255 (390)
Q Consensus 246 ~~~~~~~~~~ 255 (390)
..+......+
T Consensus 202 G~l~~~~~~~ 211 (228)
T COG0705 202 GLLLAALLSR 211 (228)
T ss_pred HHHHHHHHhh
Confidence 8765444443
No 18
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=68.74 E-value=76 Score=33.15 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 036462 287 FAHIGGFLSGFLLGFVLL 304 (390)
Q Consensus 287 ~aHLgG~l~G~l~g~~~~ 304 (390)
++--||++.|++..+++.
T Consensus 101 Lsi~GGlIGg~l~~~~y~ 118 (460)
T PRK13108 101 LGIWGAVTLGVMGAWIGC 118 (460)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344567777777666665
No 19
>PRK10263 DNA translocase FtsK; Provisional
Probab=64.42 E-value=3e+02 Score=32.65 Aligned_cols=11 Identities=45% Similarity=0.597 Sum_probs=6.0
Q ss_pred hHHHHHHHHHH
Q 036462 236 ASGALFGLLGA 246 (390)
Q Consensus 236 aSgav~Gllg~ 246 (390)
.+|++.|.+..
T Consensus 141 ~gGGIIG~lLs 151 (1355)
T PRK10263 141 ASGGVIGSLLS 151 (1355)
T ss_pred cccchHHHHHH
Confidence 35666665543
No 20
>COG4769 Predicted membrane protein [Function unknown]
Probab=64.17 E-value=51 Score=29.51 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhhhhHH----------hhHHHHHHHHHHHHH
Q 036462 203 EFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTI----------YANKLAALLTLIVII 272 (390)
Q Consensus 203 ~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~----------~~~~~~~~~~l~~~~ 272 (390)
.++.+..+.+-++=-+++.+++.-+.......+.+|++...+..++.+.+.-+.. +.+....+...-..+
T Consensus 51 ~l~~~~~~~~i~lr~il~AL~sGtlfs~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLivas~Lv 130 (181)
T COG4769 51 TLNFKDALQTILLRVILQALFSGTLFSPVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVMGAFTHNLGQLIVASFLV 130 (181)
T ss_pred hccHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHcCCceEeeeehhhHHHHHHhHHHHHHHHHHH
Confidence 5666666655555555555544322233445677777777666655432221100 000010111111111
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462 273 SINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 273 ~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
.-.-++-..|.....+-+.|.+.|++....+..
T Consensus 131 ~~~~v~l~lPll~flGivsG~~vg~~~~~~i~~ 163 (181)
T COG4769 131 FTTSVMLYLPLLIFLGIVSGTAVGILANTLIIT 163 (181)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122235777788888899999888877753
No 21
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=62.22 E-value=1.6e+02 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhH
Q 036462 183 VFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTS 224 (390)
Q Consensus 183 ~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~ 224 (390)
+..+++|.+.|+..+..+-+....+|.+ +++++|++.+
T Consensus 10 l~Nf~~d~~LL~~t~~~lk~~~~~~Rll----~ga~iGa~~~ 47 (288)
T TIGR02854 10 LENFIIDYFLLYLTARTLKDKVSQWRLL----LAALIGSLYV 47 (288)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHH----HHHHHHHHHH
Confidence 3578899999999999999999999984 4444444443
No 22
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=59.27 E-value=1e+02 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhH
Q 036462 183 VFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTS 224 (390)
Q Consensus 183 ~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~ 224 (390)
+..+++|.+.|+..+..+-+....+|.++ ++++|++.+
T Consensus 10 l~N~~md~~lL~~t~~~~~~~~~~~Rll~----~A~~Gal~~ 47 (293)
T PF03419_consen 10 LVNFLMDYFLLWLTARLLKRRASRWRLLL----GAAIGALYS 47 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHH
Confidence 35688999999999999999899999844 444444443
No 23
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=56.65 E-value=1.4e+02 Score=30.92 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc-------ceechHHHHHHHHHHHHHhhhhhhH
Q 036462 199 RLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG-------ISVGASGALFGLLGAMLSELFTNWT 256 (390)
Q Consensus 199 ~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~-------~~vGaSgav~Gllg~~~~~~~~~~~ 256 (390)
.+|-.-+.+---+=|++-|+.=.++..++..-. ..+=||.++.++++.+...++.+|+
T Consensus 314 lfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 314 LFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 357555555556778888888777776665432 2334677777888777766655543
No 24
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=55.53 E-value=1.4e+02 Score=30.32 Aligned_cols=108 Identities=21% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcce-------echHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHH
Q 036462 199 RLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIS-------VGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVI 271 (390)
Q Consensus 199 ~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~-------vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (390)
.+|-.-|.+---.=|++.|+.=.+++.+...-.-+ +=||.+..++.+.++.....+|+.. ....+.+.
T Consensus 314 ifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~g-----~~f~~~L~ 388 (443)
T COG4452 314 IFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWRNG-----LLFFLALL 388 (443)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHH
Confidence 35766676666788888888777776665443333 4477888888888877666665422 12223333
Q ss_pred HHHHHhhccCCchhHHHHHHHH-HHHHHHHHHHhhccccccc
Q 036462 272 ISINLAVGILPKVDNFAHIGGF-LSGFLLGFVLLIRPQFGWI 312 (390)
Q Consensus 272 ~~~~l~~~~~p~i~~~aHLgG~-l~G~l~g~~~~~~~~~~~~ 312 (390)
.+..++++++..-|+.--+|.. ++=.+.+.+++ .++.+|+
T Consensus 389 ~lygvm~glL~~edyALL~Gs~llf~~LaavM~l-TRklDwy 429 (443)
T COG4452 389 LLYGVMFGLLNSEDYALLLGSLLLFVALAAVMFL-TRKLDWY 429 (443)
T ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHhe-eeecchh
Confidence 4444556666555554444433 33334455555 3445554
No 25
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.14 E-value=30 Score=34.66 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=54.8
Q ss_pred hcCCcceechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHH-HHHHH----HHHhhc-c-CCchhHHHHHHHHHHHH-H
Q 036462 227 FIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTL-IVIIS----INLAVG-I-LPKVDNFAHIGGFLSGF-L 298 (390)
Q Consensus 227 ~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l-~~~~~----~~l~~~-~-~p~i~~~aHLgG~l~G~-l 298 (390)
+..+...-=.||.++|+++.++..++.-|+.++++-.....+ ..|.+ +..++. + .-++-+.-|+-|-+.=. +
T Consensus 156 Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt~~~~iliGgWs~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgl 235 (452)
T KOG3817|consen 156 LSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKTMMYGILIGGWSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGL 235 (452)
T ss_pred hccCceEEEecccHHHHHHHHHHHHHHHHHhcccccceEEEEEccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566667889999999998887777777766543211100 01111 111111 0 11355666776654322 2
Q ss_pred HHHHHhhccccccccccCCCCCCccccccccCCchhHHHHHHHHHH
Q 036462 299 LGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLIL 344 (390)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~ 344 (390)
+.+++..+. | .++..|...+.+|.++.+++++
T Consensus 236 iSfaVCYK~--G------------Pp~d~RS~~ilmWtLqli~lvl 267 (452)
T KOG3817|consen 236 ISFAVCYKI--G------------PPKDPRSQTILMWTLQLIGLVL 267 (452)
T ss_pred HHHhhhhcc--C------------CCCCcchhhHHHHHHHHHHHHH
Confidence 344444221 1 1112345567788888887765
No 26
>PRK11715 inner membrane protein; Provisional
Probab=55.09 E-value=1.4e+02 Score=30.89 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc-------ceechHHHHHHHHHHHHHhhhhhhH
Q 036462 200 LEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG-------ISVGASGALFGLLGAMLSELFTNWT 256 (390)
Q Consensus 200 lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~-------~~vGaSgav~Gllg~~~~~~~~~~~ 256 (390)
+|-.-+.+---+=|++-|+.=.++..++..-. ..+=||.++.++++.++...+.+|+
T Consensus 321 fE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k 384 (436)
T PRK11715 321 FELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWK 384 (436)
T ss_pred HHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 46544555556778888888777777665433 2334677788888888776666554
No 27
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=54.39 E-value=62 Score=22.96 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhHH
Q 036462 184 FHVLANMLSLLFIGIRLEQEFGF-VRIGFLYVLSGFGGSLTSA 225 (390)
Q Consensus 184 ~HLl~N~~~l~~~G~~lE~~~G~-~r~l~lyl~sgi~g~l~~~ 225 (390)
..++.+++.-..+|..+++.+|+ ..+.++.++-|+.+++...
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999998 6666677777777766543
No 28
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=53.16 E-value=69 Score=28.61 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 036462 97 MVPGFVVANIVLFVI 111 (390)
Q Consensus 97 vt~~li~i~v~vfi~ 111 (390)
|..++.++.++.|++
T Consensus 100 Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 100 VLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 29
>PF11321 DUF3123: Protein of unknown function (DUF3123); InterPro: IPR021470 This eukaryotic family of proteins has no known function.
Probab=48.65 E-value=28 Score=28.81 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=24.4
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 036462 4 NNNKTPNDFEITVMSSPRPRPPPPLEAASSPAETESTSSTTT 45 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~ 45 (390)
|-|-.++|++.||+-.|..--...+.++.+++.+.+.++.++
T Consensus 40 ~~nfp~~DP~~tvrVA~~~vk~~~p~~A~~~~~~~~~~~~~~ 81 (113)
T PF11321_consen 40 NGNFPRGDPFRTVRVARKDVKLITPPPAPTAAATSSDPPPPA 81 (113)
T ss_pred cCCCCCCCCccceEechhhccccCCCCCCCcccccccCCCcc
Confidence 345567899999988876554444444444444444333333
No 30
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.74 E-value=81 Score=37.10 Aligned_cols=14 Identities=0% Similarity=0.223 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 036462 100 GFVVANIVLFVITM 113 (390)
Q Consensus 100 ~li~i~v~vfi~~~ 113 (390)
+++++.+++|++..
T Consensus 27 gIlLlllAlfL~lA 40 (1355)
T PRK10263 27 LILIVLFAVWLMAA 40 (1355)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444454433
No 31
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=46.26 E-value=1.8e+02 Score=30.16 Aligned_cols=80 Identities=15% Similarity=0.332 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccCCc---h---hHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccccccCCchhHHHHHH
Q 036462 267 TLIVIISINLAVGILPK---V---DNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVI 340 (390)
Q Consensus 267 ~l~~~~~~~l~~~~~p~---i---~~~aHLgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~ 340 (390)
++++++++.+..-+.|+ + .+.+.+||+++ +++.++++.+--+.|-|+...+.+ +...+.+...+..+
T Consensus 115 K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~F-iliQlIlLvDFah~wne~w~~~~e------~~~s~~w~~~Li~~ 187 (429)
T PF03348_consen 115 KFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIF-ILIQLILLVDFAHSWNESWVEKAE------EGNSKRWYIALIGV 187 (429)
T ss_pred HHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc------cccCceehhHHHHH
Confidence 34444444444345665 1 23556666555 455666665544455443221110 01113444555555
Q ss_pred HHHHHHHHHHHHH
Q 036462 341 SLILLIAGYTVGL 353 (390)
Q Consensus 341 ~~~~l~~~~~~~~ 353 (390)
+++..+..++...
T Consensus 188 T~~~y~~si~~~v 200 (429)
T PF03348_consen 188 TLLFYAASIAGIV 200 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444444333
No 32
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=45.27 E-value=2.3e+02 Score=32.23 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHH
Q 036462 182 GVFHVLANMLSLLFIGIRLEQEFGF-VRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAM 247 (390)
Q Consensus 182 ~~~HLl~N~~~l~~~G~~lE~~~G~-~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~ 247 (390)
-++=++.|+..-+.||..+++.-+. .-..-+.+.+++.|-+.+.+-.+.-..+|.+|.+.-+..++
T Consensus 375 ~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~l 441 (900)
T TIGR00834 375 VIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAF 441 (900)
T ss_pred HHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHH
Confidence 4566778888899999988876543 34444445555555555544434447789999877666544
No 33
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=37.13 E-value=3.8e+02 Score=25.66 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=32.1
Q ss_pred eechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462 233 SVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 233 ~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
.+.....+.|++|+=+.+.+.+|+.+....... +.+ ..++ .+-.||+++|++.++.+.+
T Consensus 53 ~l~~~~~l~gilGARl~~Vl~~~~~y~~~p~~i--------~~i---~~GG---ls~~GGligg~l~~~~~~r 111 (269)
T PRK12437 53 DLVLIAVPIAILGARIYYVLFEWDYYAQNPSQI--------FNI---WQGG---LAIHGGLIGAVLTGIIFAK 111 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHhCHHHH--------HHH---hcCC---chHHHHHHHHHHHHHHHHH
Confidence 345556667777776666666776553211111 011 1122 2334788888887777653
No 34
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.97 E-value=1.2e+02 Score=24.84 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhHH
Q 036462 184 FHVLANMLSLLFIGIRLEQEFGF-VRIGFLYVLSGFGGSLTSA 225 (390)
Q Consensus 184 ~HLl~N~~~l~~~G~~lE~~~G~-~r~l~lyl~sgi~g~l~~~ 225 (390)
++++.-++.-.++|..+.+.+|+ ..+.+++++.|++.++...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999999985 3455667777777666543
No 35
>PLN02705 beta-amylase
Probab=35.15 E-value=35 Score=36.64 Aligned_cols=13 Identities=15% Similarity=0.044 Sum_probs=7.1
Q ss_pred CCCCccceeeeee
Q 036462 364 NHCSWCRYLSCVP 376 (390)
Q Consensus 364 ~~C~~c~~~~C~p 376 (390)
.+|.-.||=+|-+
T Consensus 417 GP~GELRYPSYp~ 429 (681)
T PLN02705 417 GASGELKYPSFPE 429 (681)
T ss_pred CCCccccCCCCcc
Confidence 3555566666644
No 36
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.35 E-value=3.2e+02 Score=28.37 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 036462 206 FVRIGFLYVLSGFGGSLT 223 (390)
Q Consensus 206 ~~r~l~lyl~sgi~g~l~ 223 (390)
+.-|..-|++++++..++
T Consensus 348 hi~F~~AYliAa~a~i~L 365 (430)
T PF06123_consen 348 HIGFNLAYLIAALACIGL 365 (430)
T ss_pred hhchHHHHHHHHHHHHHH
Confidence 345666777776665444
No 37
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=33.76 E-value=6.5e+02 Score=27.30 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462 185 HVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF 227 (390)
Q Consensus 185 HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~ 227 (390)
..+.+.....++|+ +-+++|.+.++++-.+-+++|.++..-.
T Consensus 87 ~~l~~av~~~~~G~-LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 87 WTLASAVSFPFVGR-LSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHhhHH-HHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 45556666666655 6679999999887777777777765533
No 38
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=31.38 E-value=7.4e+02 Score=28.09 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhhhhHHhh
Q 036462 181 GGVFHVLANMLSLLFIGIRLEQEF-GFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYA 259 (390)
Q Consensus 181 ~~~~HLl~N~~~l~~~G~~lE~~~-G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~~~ 259 (390)
.-+.=.+.++..-..||..+++.- |.....-..+.+++.|.+.+.+-.+.-.-+|.+|-+.=..-++.- +.......-
T Consensus 365 ~~lfiYfa~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~-f~~~~~~dy 443 (876)
T KOG1172|consen 365 ATLFIYFACLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFK-FCKDNGLDY 443 (876)
T ss_pred HHHHHHHHhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHH-HHhhCCCch
Confidence 345566778888889999888654 333344444444444444443333344778888887654433321 111111111
Q ss_pred HHHHHHHHHHHH--HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhc
Q 036462 260 NKLAALLTLIVI--ISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 260 ~~~~~~~~l~~~--~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~ 306 (390)
..+..++.+... .++..+....--+.+..-..+=++|++++++++..
T Consensus 444 l~~r~wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~e 492 (876)
T KOG1172|consen 444 LAFRAWVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYE 492 (876)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 112222222111 11111111222366677777888888888888743
No 39
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=30.04 E-value=4.8e+02 Score=24.70 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhH-HhhcCCcceechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHH
Q 036462 213 YVLSGFGGSLTS-ALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIG 291 (390)
Q Consensus 213 yl~sgi~g~l~~-~l~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLg 291 (390)
+.+++++|.+++ .+.+++ ..| --|.+-+.+++.++..|+..+........+....+...+. + ..+.-+.
T Consensus 147 Wv~~t~iGa~~G~~l~~~~--~~G---ldFal~a~Fi~L~~~~~k~~~~~~~~~~~~~~a~~~~~l~---~--~~~~v~~ 216 (238)
T COG1296 147 WVVGTLIGALLGSLLPDPE--TIG---LDFALPALFIVLVIPQFKRRKTLLSVLASLVLALVALVLF---G--GPWAVLA 216 (238)
T ss_pred HHHHHHHHHHhhhccCCHh--hhh---HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---h--HHHHHHH
Confidence 345556665555 222222 233 4555555556656666655444333333332222222222 2 4456667
Q ss_pred HHHHHHHHHHHHh
Q 036462 292 GFLSGFLLGFVLL 304 (390)
Q Consensus 292 G~l~G~l~g~~~~ 304 (390)
|.++|.+...+..
T Consensus 217 ~~la~l~~~~l~~ 229 (238)
T COG1296 217 GILAGLLAALLLA 229 (238)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777665553
No 40
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=29.52 E-value=5.1e+02 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccc
Q 036462 287 FAHIGGFLSGFLLGFVLLIRPQFGWIS 313 (390)
Q Consensus 287 ~aHLgG~l~G~l~g~~~~~~~~~~~~~ 313 (390)
..++.|+..+-.+.+.+...+.++|++
T Consensus 270 ~~Nl~~I~la~~~vf~~~g~~p~~~~~ 296 (325)
T TIGR00341 270 LINVAGLMAGSLAGVYVYGIRAYRYYK 296 (325)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhh
Confidence 557777777766666555444445543
No 41
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.32 E-value=1.2e+02 Score=28.44 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462 271 IISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRP 307 (390)
Q Consensus 271 ~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~~ 307 (390)
.+++.++++++-+.-++--+.|++.|++.+++++-++
T Consensus 38 ~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rr 74 (224)
T PF13829_consen 38 PIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRR 74 (224)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444446778889999999999888553
No 42
>PRK11715 inner membrane protein; Provisional
Probab=27.95 E-value=4.7e+02 Score=27.19 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHhh-----cCCcceechHHHHHHHHHHH
Q 036462 206 FVRIGFLYVLSGFGGSLTSALF-----IQEGISVGASGALFGLLGAM 247 (390)
Q Consensus 206 ~~r~l~lyl~sgi~g~l~~~l~-----~~~~~~vGaSgav~Gllg~~ 247 (390)
+.-|..-|++++++..++-.++ ......++..+++.++.|.+
T Consensus 354 HigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~L 400 (436)
T PRK11715 354 HIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVL 400 (436)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3456667777766654443222 22224444444444444443
No 43
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=27.18 E-value=5.4e+02 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036462 289 HIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 289 HLgG~l~G~l~g~~~~~ 305 (390)
.++|.+.|++.+..+..
T Consensus 136 VlaG~~lGi~~~~~~~~ 152 (235)
T cd03381 136 VIAGVISGIAVAETFSH 152 (235)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58899999988877754
No 44
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=26.78 E-value=1.4e+02 Score=21.98 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHhhcCCcceechHHHHHHHHHH
Q 036462 213 YVLSGFGGSLTSALFIQEGISVGASGALFGLLGA 246 (390)
Q Consensus 213 yl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~ 246 (390)
|+.+.++|-....++..+....|+||.+.+++..
T Consensus 6 l~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~ 39 (62)
T PF14241_consen 6 LIGGLLIGLAASLLLLLNGRIAGISGILSGLLSP 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC
Confidence 4555566655555555667789999998888744
No 45
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=26.32 E-value=4.9e+02 Score=23.53 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 036462 285 DNFAHIGGFLSGFLLGFV 302 (390)
Q Consensus 285 ~~~aHLgG~l~G~l~g~~ 302 (390)
.+..-+.++++|++.-++
T Consensus 80 ~~~~~~~~ii~gliaeli 97 (189)
T TIGR02185 80 YWPMIISSIIGGLLADII 97 (189)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455666677777655543
No 46
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=25.67 E-value=5e+02 Score=26.74 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462 183 VFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF 227 (390)
Q Consensus 183 ~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~ 227 (390)
..+++.-++.-+.+|..-++ +|.+..+.+-++..+++++...+.
T Consensus 125 s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a 168 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA 168 (521)
T ss_pred HHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777777776 999999888777777777655433
No 47
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=25.66 E-value=6.3e+02 Score=24.62 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 036462 286 NFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 286 ~~aHLgG~l~G~l~g~~~~~~ 306 (390)
..+-+||++.|+-+|+++..+
T Consensus 115 l~aifgG~l~G~G~glv~r~g 135 (289)
T COG1284 115 LAALFGGLLLGIGLGLVFRHG 135 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 478899999999888887543
No 48
>COG4393 Predicted membrane protein [Function unknown]
Probab=24.88 E-value=7.2e+02 Score=24.98 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhcCC-cceechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCC---
Q 036462 207 VRIGFLYVLSGFGGSLTSALFIQE-GISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILP--- 282 (390)
Q Consensus 207 ~r~l~lyl~sgi~g~l~~~l~~~~-~~~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p--- 282 (390)
.+...+-++.|+.|..++..+... ....-.++...|.+-.++. ...|+.. ....++.++..+...+-++..|
T Consensus 32 ~~vvwl~~L~~~~g~~~~~y~pKsq~~~l~l~~v~i~sLLlf~~--sqfw~~i--~l~~Fw~~lLsF~aaL~wg~~~n~f 107 (405)
T COG4393 32 FFVVWLGFLFGYFGFFIAAYFPKSQNLILNLDFVFIGSLLLFFI--SQFWKKI--ELLNFWLLLLSFCAALHWGFMPNLF 107 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHhhccCcccc
Confidence 344455566777777766655433 3667788888777754432 3334322 2223333444444445555544
Q ss_pred --------chhHHHHHHHHHHHHHHHHHHh
Q 036462 283 --------KVDNFAHIGGFLSGFLLGFVLL 304 (390)
Q Consensus 283 --------~i~~~aHLgG~l~G~l~g~~~~ 304 (390)
+.|..-|+|+++.|++..+.+.
T Consensus 108 ~if~tdvinTd~ll~lg~i~lall~~ilia 137 (405)
T COG4393 108 AIFGTDVINTDSLLRLGAILLALLTIILIA 137 (405)
T ss_pred ccccccccccHHHHHhHHHHHHHHHHHHHH
Confidence 4678899999999998766554
No 49
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=24.74 E-value=2.1e+02 Score=28.37 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh
Q 036462 282 PKVDNFAHIGGFLSGFLLGFVLL 304 (390)
Q Consensus 282 p~i~~~aHLgG~l~G~l~g~~~~ 304 (390)
+..++.+|++|.+.|+..++...
T Consensus 246 ~~~~fil~~~g~~~~~~~~~~~~ 268 (316)
T KOG2289|consen 246 FLLGFVLHIGGQLGGITIGLIVL 268 (316)
T ss_pred cchhHHhhhccceeEEeccceee
Confidence 45889999999999998887774
No 50
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=24.40 E-value=6.5e+02 Score=24.31 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhc
Q 036462 282 PKVDNFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 282 p~i~~~aHLgG~l~G~l~g~~~~~~ 306 (390)
+..++..-+.++..|++...++.-+
T Consensus 157 ~~~~~~~~l~sl~~gl~~~~iL~~N 181 (285)
T TIGR02235 157 QSFSLIPWKASILVGLATTLILFCS 181 (285)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666677778887776666644
No 51
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=86 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 036462 285 DNFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 285 ~~~aHLgG~l~G~l~g~~~~~~ 306 (390)
-|..-+-|+++|+++|+++.+-
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677999999999998753
No 52
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.26 E-value=2.7e+02 Score=22.54 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=24.8
Q ss_pred HhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCc-hhHHH-HHHHHHHHHHHHHHH
Q 036462 249 SELFTNWTIYANKLAALLTLIVIISINLAVGILPK-VDNFA-HIGGFLSGFLLGFVL 303 (390)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~~a-HLgG~l~G~l~g~~~ 303 (390)
+..+......+.++.-++.+++-+++.++...+++ .+... -..|.++|+...-++
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 33343333334455444444444444444444443 22222 245667777665443
No 53
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.61 E-value=64 Score=27.31 Aligned_cols=18 Identities=11% Similarity=0.379 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 036462 334 QYVFWVISLILLIAGYTV 351 (390)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~ 351 (390)
||+++++.++++++.+++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 355555544444444433
No 54
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=23.12 E-value=6.5e+02 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=12.7
Q ss_pred ccCCchhHHHHHHHHHHH
Q 036462 328 SKHKPYQYVFWVISLILL 345 (390)
Q Consensus 328 ~k~~~~~~~~~~~~~~~l 345 (390)
+..+..+|.+++++++++
T Consensus 125 rs~~~v~W~Lqligl~lI 142 (249)
T PF10225_consen 125 RSRNFVKWALQLIGLVLI 142 (249)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344667888888887763
No 55
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=23.11 E-value=6.5e+02 Score=24.15 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 036462 286 NFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 286 ~~aHLgG~l~G~l~g~~~~~~ 306 (390)
+.....++..|+++|-+....
T Consensus 82 yp~~t~~fF~GLIlgSip~l~ 102 (257)
T PF04018_consen 82 YPIPTYSFFFGLILGSIPFLY 102 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 345667777787777666543
No 56
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.75 E-value=1.1e+03 Score=26.52 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=8.1
Q ss_pred eechHHHHHHHHHHH
Q 036462 233 SVGASGALFGLLGAM 247 (390)
Q Consensus 233 ~vGaSgav~Gllg~~ 247 (390)
.+|.||-+...++..
T Consensus 261 lLggSGfLAVFVAGl 275 (810)
T TIGR00844 261 MLGVDDLLVSFFAGT 275 (810)
T ss_pred HhccccHHHHHHHHH
Confidence 456677555444443
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=22.54 E-value=7e+02 Score=24.39 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhc
Q 036462 281 LPKVDNFAHIGGFLSGFLLGFVLLIR 306 (390)
Q Consensus 281 ~p~i~~~aHLgG~l~G~l~g~~~~~~ 306 (390)
.+..+...-+.++..|++..-++.-+
T Consensus 169 t~~~~~~~~~~sl~~gll~~~IL~~N 194 (304)
T PRK07419 169 TPSWSLIPLAASIILGLATSLILFCS 194 (304)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666777888887777666543
No 58
>COG2149 Predicted membrane protein [Function unknown]
Probab=22.28 E-value=1.7e+02 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036462 335 YVFWVISLILLIAGYTVGLILLLR 358 (390)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~ 358 (390)
-+..+.++.+++++.++.+..++.
T Consensus 95 ~i~~~~av~lvVv~~~~~llv~~~ 118 (120)
T COG2149 95 NIWLYLAVGLVVVGVIVLLLVLYQ 118 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777766666665555543
No 59
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.61 E-value=1e+03 Score=25.30 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhh
Q 036462 173 LLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELF 252 (390)
Q Consensus 173 llTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~ 252 (390)
+..-.++..|+-.-..-++.-.++...+-..-.+.+....++.+.+.|.+++.++ .....-..+| .-.+...+...++
T Consensus 352 ~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~-~~~vlP~~~~-f~~L~l~l~~~l~ 429 (650)
T PF04632_consen 352 IAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLY-LFFVLPHLDG-FPLLALVLAPFLF 429 (650)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHH-HHHhhhccCc-HHHHHHHHHHHHH
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHhhccCCc-----hhHHHHHHHHHHHHHHHHHHhh
Q 036462 253 TNWTIYANKLAALLTLIVIISINLAVGILPK-----VDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-----i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
..+-...++......+...+.+.+..+.... ....-..-|.+.|++++++...
T Consensus 430 ~~~~~~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~ 487 (650)
T PF04632_consen 430 LGGLLMARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFR 487 (650)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
No 60
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=20.37 E-value=1.2e+03 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhH
Q 036462 186 VLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTS 224 (390)
Q Consensus 186 Ll~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~ 224 (390)
.+..++..+..|...+ ++|.++.+++.++...+++++.
T Consensus 212 ~lG~iiG~li~G~LsD-R~GRR~~lii~lil~~i~~ll~ 249 (742)
T TIGR01299 212 YLGMMVGAFFWGGLAD-KLGRKQCLLICLSVNGFFAFFS 249 (742)
T ss_pred HHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHH
Confidence 4566667667776555 7899988777655555555444
No 61
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.13 E-value=96 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.5
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhh
Q 036462 92 RHFPWMVPGFVVANIVLFVITMYE 115 (390)
Q Consensus 92 ~~~p~vt~~li~i~v~vfi~~~~~ 115 (390)
..-.|.|++++++|+++|++..++
T Consensus 149 r~STwgT~~lmgvNvllFl~~~~~ 172 (207)
T PF05546_consen 149 RASTWGTWGLMGVNVLLFLVAQLL 172 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444789999999999999998765
Done!