Query 036462
Match_columns 390
No_of_seqs 293 out of 2006
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 9E-29 3.1E-33 223.0 19.1 177 94-305 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 1.7E-29 5.8E-34 230.5 11.7 181 92-307 6-187 (196)
3 4aps_A DI-OR tripeptide H+ sym 18.5 5.9E+02 0.02 23.8 12.5 41 185-225 63-103 (491)
4 3mp7_B Preprotein translocase 17.2 1.9E+02 0.0064 20.4 4.4 31 327-357 24-54 (61)
5 2jpw_A Troponin I, cardiac mus 16.0 52 0.0018 19.9 1.0 18 13-30 5-22 (32)
6 1jlp_A PSI-conotoxin PIIIF; mu 15.3 49 0.0017 18.7 0.7 16 367-384 3-18 (26)
7 3dh4_A Sodium/glucose cotransp 14.2 8.8E+02 0.03 23.9 11.8 14 289-302 454-467 (530)
8 4gc0_A D-xylose-proton symport 14.1 7.5E+02 0.026 23.0 9.9 38 187-225 66-103 (491)
9 1pk8_A RAT synapsin I; ATP bin 13.9 38 0.0013 33.5 0.0 19 8-27 18-36 (422)
10 2jp3_A FXYD domain-containing 12.8 2.2E+02 0.0074 20.5 3.7 24 335-358 15-38 (67)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=9e-29 Score=222.99 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=130.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhh
Q 036462 94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRL 173 (390)
Q Consensus 94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRl 173 (390)
.+++|..++++|+++|+++....+ ......+ +++++ ...++||||+
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~-----------~~~~~~~----------------------~~~p~-~~~~~~~wrl 48 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGD-----------QEVMLWL----------------------AWPFD-PTLKFEFWRY 48 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHHH----------------------SSCCS-GGGTTCTTHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCc-----------HHHHHhh----------------------cCChh-hccCCCCHHH
Confidence 467999999999999998875421 1112222 22222 2345999999
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhh
Q 036462 174 LTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFT 253 (390)
Q Consensus 174 lTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~ 253 (390)
+|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|+++++++.+.. ++||||++||++++.++.-..
T Consensus 49 ~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~ 127 (181)
T 2xov_A 49 FTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGER 127 (181)
T ss_dssp HHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998887654 899999999999987542211
Q ss_pred hhHHh-hHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462 254 NWTIY-ANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI 305 (390)
Q Consensus 254 ~~~~~-~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~ 305 (390)
+.+.. ..+.........+++..+...+.+++|+.||++|+++|+++++.+.+
T Consensus 128 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 128 DPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp CGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 11110 01122222233333333332234689999999999999999987753
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.96 E-value=1.7e-29 Score=230.54 Aligned_cols=181 Identities=18% Similarity=0.275 Sum_probs=131.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcch
Q 036462 92 RHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVW 171 (390)
Q Consensus 92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~w 171 (390)
.+.+++|..++++|+++|+++....+ +.+.++.++.++.+ .++|||
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~---------------------------------~~~~~~~~~~p~~~-~~~~~w 51 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFE---------------------------------DDIMYLMHYPAYEE-QDSEVW 51 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCH---------------------------------HHHHHHHSCCCSGG-GGGCTT
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCc---------------------------------HHHHHhhcCCHhhc-ccCCcH
Confidence 34477999999999999998764310 11222223333333 458999
Q ss_pred hhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhh
Q 036462 172 RLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSEL 251 (390)
Q Consensus 172 RllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~ 251 (390)
|++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|+++++++.+.. ++||||++||++++.+..-
T Consensus 52 rl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~ 130 (196)
T 2nr9_A 52 RYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRD 130 (196)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654 8999999999999875422
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462 252 FTNWTIYANKLAALLTLIVIISINLAVG-ILPKVDNFAHIGGFLSGFLLGFVLLIRP 307 (390)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~i~~~aHLgG~l~G~l~g~~~~~~~ 307 (390)
..+.+....+......+.+++++.+... ..+++|+.||+||+++|+++++.+.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~ 187 (196)
T 2nr9_A 131 KLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLR 187 (196)
T ss_dssp HSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111110011111111111122222211 2358999999999999999999887554
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=18.46 E-value=5.9e+02 Score=23.85 Aligned_cols=41 Identities=17% Similarity=-0.040 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHH
Q 036462 185 HVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSA 225 (390)
Q Consensus 185 HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~ 225 (390)
..+..++.....|...+|.+|.++.+.+-.+....+.+...
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 34555666666777666448999988776666555555443
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=17.22 E-value=1.9e+02 Score=20.39 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=22.8
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036462 327 KSKHKPYQYVFWVISLILLIAGYTVGLILLL 357 (390)
Q Consensus 327 k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (390)
|...+-++.+..+.++.+++++++..++.+.
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567788889999888888887666543
No 5
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=16.01 E-value=52 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=11.8
Q ss_pred ccccccCCCCCCCCCCCC
Q 036462 13 EITVMSSPRPRPPPPLEA 30 (390)
Q Consensus 13 ~~~~~~~p~~~~~~~~~~ 30 (390)
+-.+...|+|.|+|-++.
T Consensus 5 ~~~~~~~~~PaP~p~RRr 22 (32)
T 2jpw_A 5 SSDAAGEPQPAPAPVRRR 22 (32)
T ss_dssp THHHHSCCCCCCCCCCCT
T ss_pred cccCCCCCCCCCcccccc
Confidence 344667888888875443
No 6
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=15.26 E-value=49 Score=18.71 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=12.7
Q ss_pred CccceeeeeeCCCCCcCC
Q 036462 367 SWCRYLSCVPTPWWNCKA 384 (390)
Q Consensus 367 ~~c~~~~C~p~~~~~c~~ 384 (390)
|.|-|=+|-|++. |.+
T Consensus 3 pcclygscrpfpg--cyn 18 (26)
T 1jlp_A 3 PCCLYGSCRPFPG--CYN 18 (26)
T ss_dssp CSCSTTSCCCCTT--TTT
T ss_pred CceeeccccCCCc--hhh
Confidence 4599999999976 654
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=14.17 E-value=8.8e+02 Score=23.89 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 036462 289 HIGGFLSGFLLGFV 302 (390)
Q Consensus 289 HLgG~l~G~l~g~~ 302 (390)
-+-|++..++..++
T Consensus 454 ~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 454 MLYTLLFTMVVIAF 467 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=14.07 E-value=7.5e+02 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHH
Q 036462 187 LANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSA 225 (390)
Q Consensus 187 l~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~ 225 (390)
+..++....+|..- +++|.++.+.+-.+--.++++++.
T Consensus 66 ~G~~iG~~~~G~la-Dr~GRk~~l~~~~~l~~i~~i~~a 103 (491)
T 4gc0_A 66 IGCIIGGALGGYCS-NRFGRRDSLKIAAVLFFISGVGSA 103 (491)
T ss_dssp HHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHH
Confidence 34445555666544 479999987666555555555443
No 9
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=13.88 E-value=38 Score=33.46 Aligned_cols=19 Identities=47% Similarity=1.163 Sum_probs=0.0
Q ss_pred CCCccccccccCCCCCCCCC
Q 036462 8 TPNDFEITVMSSPRPRPPPP 27 (390)
Q Consensus 8 ~~~~~~~~~~~~p~~~~~~~ 27 (390)
+||-| |+-.+-|.|.+|||
T Consensus 18 lp~gy-~~~~~~~~~~~~~~ 36 (422)
T 1pk8_A 18 LPNGY-MTDLQRPQPPPPPP 36 (422)
T ss_dssp --------------------
T ss_pred CCccc-ccccCCCCCCCCCC
Confidence 45555 33334444333333
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.83 E-value=2.2e+02 Score=20.52 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 036462 335 YVFWVISLILLIAGYTVGLILLLR 358 (390)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~ 358 (390)
-.+++..+++..++|+++++.+..
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHheecchhhHHHHHHHHHHHHHc
Confidence 368889999999999999888764
Done!