Query 036463
Match_columns 119
No_of_seqs 112 out of 1025
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3000 ERG3 Sterol desaturase 100.0 1.5E-28 3.3E-33 183.8 8.9 115 2-119 122-238 (271)
2 KOG0873 C-4 sterol methyl oxid 99.9 6.3E-28 1.4E-32 178.9 6.0 115 1-119 146-261 (283)
3 KOG0874 Sphingolipid hydroxyla 99.9 9.7E-28 2.1E-32 172.4 -2.9 118 1-118 149-266 (287)
4 KOG0872 Sterol C5 desaturase [ 99.9 7.3E-25 1.6E-29 161.5 3.6 111 1-119 154-264 (312)
5 PLN02869 fatty aldehyde decarb 99.9 4E-24 8.6E-29 172.0 7.6 113 1-118 153-276 (620)
6 PF04116 FA_hydroxylase: Fatty 99.7 1.3E-16 2.8E-21 104.1 5.8 91 1-92 24-114 (114)
7 PLN02434 fatty acid hydroxylas 98.5 3.4E-07 7.4E-12 67.6 5.4 34 84-119 198-231 (237)
8 PRK07424 bifunctional sterol d 97.6 0.00011 2.4E-09 58.2 5.3 113 1-117 35-175 (406)
9 KOG0539 Sphingolipid fatty aci 96.0 0.013 2.9E-07 42.7 4.6 32 84-117 201-232 (240)
10 PF10520 Kua-UEV1_localn: Kua- 95.4 0.031 6.7E-07 39.8 4.5 56 57-114 97-155 (178)
11 PLN02601 beta-carotene hydroxy 92.8 0.096 2.1E-06 39.6 2.6 40 63-102 225-269 (303)
12 KOG3011 Ubiquitin-conjugating 84.5 1.7 3.8E-05 32.6 4.0 58 52-111 199-259 (293)
13 cd03505 Delta9-FADS-like The D 57.4 24 0.00052 25.0 4.3 19 82-101 134-152 (178)
14 PF02208 Sorb: Sorbin homologo 32.7 17 0.00037 20.1 0.3 10 2-11 32-41 (47)
15 KOG1600 Fatty acid desaturase 29.5 97 0.0021 24.2 3.9 32 84-116 122-158 (321)
16 smart00459 Sorb Sorbin homolog 26.0 25 0.00055 19.8 0.2 9 2-10 35-43 (50)
17 COG5336 Uncharacterized protei 25.3 2.1E+02 0.0045 18.9 5.1 42 28-69 51-98 (116)
18 cd03510 Rhizobitoxine-FADS-lik 24.7 1.9E+02 0.0042 20.0 4.6 76 2-94 72-161 (175)
19 TIGR02777 LigD_PE_dom DNA liga 23.7 44 0.00095 23.3 1.1 36 80-117 70-108 (156)
No 1
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.95 E-value=1.5e-28 Score=183.84 Aligned_cols=115 Identities=33% Similarity=0.435 Sum_probs=101.5
Q ss_pred hhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccc--c
Q 036463 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHL--F 79 (119)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~--~ 79 (119)
+|+++|++||+.++|+++++.+.||+|.++... ...+++.++|.++.++.++..+..+.++++|||++.| .+.+. .
T Consensus 122 ~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~ 199 (271)
T COG3000 122 LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAF-LGLLPLLLLGLSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRY 199 (271)
T ss_pred HHHHHHHhhcCcccCCchhhhhcChHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCcccc-CCccccee
Confidence 467999999999999999999999999999964 6777777889999999999999999999999999987 44332 2
Q ss_pred cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 80 FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
++++|++|++||++++.++|||. .+++|||+|||+..++
T Consensus 200 v~~~p~~H~lHH~~~~~~~Nyg~-~~~~WDrlFGT~~~~~ 238 (271)
T COG3000 200 VFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGTYHPPD 238 (271)
T ss_pred eecCchHHHHhccCCCCCCcchh-hhHHHHHHcccCCCCc
Confidence 57999999999999855699996 7999999999998763
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.94 E-value=6.3e-28 Score=178.89 Aligned_cols=115 Identities=30% Similarity=0.459 Sum_probs=103.7
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccc-c
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHL-F 79 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~-~ 79 (119)
|+||.+||+||+.++|.+.++.+.||+|.++.++.+... +++++.|+.+.+++++++.+..+..||||++||.+.|. +
T Consensus 146 ~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~-p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~p 224 (283)
T KOG0873|consen 146 WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMG-PALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIP 224 (283)
T ss_pred HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhh-hHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCc
Confidence 689999999999999999999999999999998644444 44556699999999999999999999999999998876 5
Q ss_pred cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 80 FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
+.++++.||+||..+ .+||+. .|+.|||++||.+.|+
T Consensus 225 fy~ga~~HD~HH~~f--~~n~~~-~f~~~D~i~GTd~~~~ 261 (283)
T KOG0873|consen 225 FYGGAEHHDYHHLVF--IGNFAS-VFGYLDRIHGTDSTYR 261 (283)
T ss_pred ccCCCcccchhhhhc--cccccc-hhHHHHHHhccCccHh
Confidence 788999999999998 779996 8999999999999875
No 3
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.92 E-value=9.7e-28 Score=172.40 Aligned_cols=118 Identities=71% Similarity=1.308 Sum_probs=112.0
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
+|||.+|++||+-..|.+..+.++||+|.++..+++..+..++-|+++.+.++++.+.++-.+-.|||+.+|..|..+.+
T Consensus 149 ~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~F 228 (287)
T KOG0874|consen 149 FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMFF 228 (287)
T ss_pred HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEec
Confidence 48999999999999999999999999999999999999999899999999999999999999999999999999988778
Q ss_pred ccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCC
Q 036463 81 QNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSY 118 (119)
Q Consensus 81 ~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~ 118 (119)
-+.+++||+||...+.++||++++|++|||++||+.+|
T Consensus 229 ~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~ 266 (287)
T KOG0874|consen 229 PNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPY 266 (287)
T ss_pred cCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCc
Confidence 89999999999998779999999999999999999987
No 4
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.90 E-value=7.3e-25 Score=161.47 Aligned_cols=111 Identities=26% Similarity=0.393 Sum_probs=101.3
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
.+||+.|+.||+.+..+|+++.++||+|.++++ +|..+.++++|+|+.+++....+..++.+.+|.|.-.... +.
T Consensus 154 ~vy~~LH~~HH~~~~~tpfAslafhpidg~lqa-ip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~l~----~~ 228 (312)
T KOG0872|consen 154 GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQA-IPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYGSLN----PP 228 (312)
T ss_pred HHHhhhcchhhhhhccCchhhhhcCcchhHhhh-chhHheeeeecchHHHHHHHHHHHHhHheeeecccccccc----Cc
Confidence 379999999999999999999999999999996 7999999999999999999999999999999999854322 24
Q ss_pred ccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 81 QNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 81 ~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
+++|.+|+.||.+. |.|||+ ++++|||+|||++.|+
T Consensus 229 ingaahHtvHH~~f--~~NYG~-~tilwDrmfgSfr~p~ 264 (312)
T KOG0872|consen 229 INGAAHHTVHHTYF--DYNYGQ-YTILWDRMFGSFRAPD 264 (312)
T ss_pred cccccccceeeeeE--ecCCCc-EEEeHHhccCcccCcc
Confidence 79999999999997 899997 9999999999999874
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=99.90 E-value=4e-24 Score=172.00 Aligned_cols=113 Identities=26% Similarity=0.431 Sum_probs=87.5
Q ss_pred ChhchhhhhcCCCCCCccccccccChH-HHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHHhcCCcc-cCCc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPL-EGLLLDTLGGALSFLV----SGMTARTTVIFFCFAVIKTVDDHSELW-LPGN 74 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~-e~ll~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~Hsg~~-~p~~ 74 (119)
++|+++|++||++++|+|+++. .||+ |.+... +...+|+++ .+.+..++.+++++..+.++++|||++ +|+.
T Consensus 153 ~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~-ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~ 230 (620)
T PLN02869 153 YLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYF-LLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKW 230 (620)
T ss_pred HHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHH-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccc
Confidence 5899999999999999999886 7886 544432 223333332 235778888888889999999999998 4654
Q ss_pred cccc-----ccccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCC
Q 036463 75 IFHL-----FFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSY 118 (119)
Q Consensus 75 ~~~~-----~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~ 118 (119)
+.+. .++++|++|++||++. ++|||. +|++|||+|||+.+.
T Consensus 231 ~~~~~ppLkyll~TPsfHdlHHs~f--d~NYGl-fF~~WDrLFGT~d~~ 276 (620)
T PLN02869 231 LFSIFPPLKYLMYTPSYHSLHHTQF--RTNYSL-FMPIYDYIYGTMDKS 276 (620)
T ss_pred hhccCCcchheecCchHHhHHhccC--CcCccc-chHHHHhccCCCCCC
Confidence 3221 1478999999999987 899996 899999999999763
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.66 E-value=1.3e-16 Score=104.05 Aligned_cols=91 Identities=27% Similarity=0.295 Sum_probs=76.7
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
++| ++|+.||+.++|+++++.+.+|+|.++...++..++.++.+.++.++.+..++..+.+.++|||+..+..+....+
T Consensus 24 ~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 102 (114)
T PF04116_consen 24 FLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALFYLWYIFIHSGYHHRFPPRLRYL 102 (114)
T ss_pred hHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCccCCCCCcchhH
Confidence 478 8999999999999999999999999999876666666778999999999999999999999999933222221235
Q ss_pred ccCCcccccCcC
Q 036463 81 QNNTAYHDVHHQ 92 (119)
Q Consensus 81 ~~~~~~H~~HH~ 92 (119)
..+|+.|++||+
T Consensus 103 ~~~~~~H~~HH~ 114 (114)
T PF04116_consen 103 FVTPRHHDLHHS 114 (114)
T ss_pred hcCHHHHHhhCc
Confidence 789999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=98.46 E-value=3.4e-07 Score=67.57 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.8
Q ss_pred CcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 84 TAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 84 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
=+.|..||-++. +.|||. -.++|||+|||..+.+
T Consensus 198 kr~H~~HHfk~~-~~~fGV-Ts~~wD~vFGT~~~~~ 231 (237)
T PLN02434 198 KKYHLNHHFRDQ-DKGFGI-TSSLWDRVFGTLPPSK 231 (237)
T ss_pred HHHHHHHcCCCC-CCCCCc-CchHHHHhcCCCCCcc
Confidence 678999998874 789997 6999999999987643
No 8
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.61 E-value=0.00011 Score=58.18 Aligned_cols=113 Identities=27% Similarity=0.334 Sum_probs=64.9
Q ss_pred ChhchhhhhcCCCCCCccc---------cccccChHHHHHHHHHHHHHHHHhcC----C------cHHHHHHHH---HHH
Q 036463 1 FLYRHIHSQHHRLVVPYAI---------GALYNHPLEGLLLDTLGGALSFLVSG----M------TARTTVIFF---CFA 58 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~---------~~~~~hp~e~ll~~~~~~~l~~~l~~----~------~~~~~~~~~---~~~ 58 (119)
||| |.|..||+.-.++-- +..+..|.|++++..+...+..++.. - .....+.|. ++.
T Consensus 35 ~l~-~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 113 (406)
T PRK07424 35 PLY-RLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAWLGVLYTLTFLFGAIAR 113 (406)
T ss_pred HHH-HHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 567 799999999866532 46778999987776554444433221 1 111111222 111
Q ss_pred HHHHHHhc-CCcccCCcc--c-ccc--cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCC
Q 036463 59 VIKTVDDH-SELWLPGNI--F-HLF--FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 59 ~~~~~~~H-sg~~~p~~~--~-~~~--~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
+. ++... ++-|..-.| . +.+ ++..+.+|-.||-.+. +.-|+. .+++-|+..||..+
T Consensus 114 ~~-~~~~~~~~~d~~h~~~~~~~~~~~~~v~~~~h~rh~~~~~-~~~~~~-~~~~~d~~~~ta~s 175 (406)
T PRK07424 114 GL-GLPNADELTDLTHLPGPFETLPSQWFVNRPYHWRHHFDNQ-NAYYCG-TFTLVDKLMGTALS 175 (406)
T ss_pred hc-ccccccccccccCCCCcccCCCccCeecCceeEEEEeccc-cceeee-eEEEeehhcCcccC
Confidence 11 22233 223332111 1 111 4677899999997653 456775 89999999999643
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=96.02 E-value=0.013 Score=42.67 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.5
Q ss_pred CcccccCcCCCCCCccCCCCCchhhhhhcCcCCC
Q 036463 84 TAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 84 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
-++|.-||-+.. +..||- -.++||++|||.-+
T Consensus 201 K~yHl~HHfk~q-~~GfGI-tS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 201 KKYHLNHHFKHQ-DLGFGI-TSSLWDYVFGTLGP 232 (240)
T ss_pred HHHHhhhhhhcc-ccCccc-cHHHHHHHhccCCC
Confidence 567888887764 789997 59999999999865
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=95.43 E-value=0.031 Score=39.78 Aligned_cols=56 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCcccCCcc--c-ccccccCCcccccCcCCCCCCccCCCCCchhhhhhcCc
Q 036463 57 FAVIKTVDDHSELWLPGNI--F-HLFFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGT 114 (119)
Q Consensus 57 ~~~~~~~~~Hsg~~~p~~~--~-~~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT 114 (119)
++...--+.|.....|..- + +.=++.+++.|..||... .+.|||. +.++|+.+...
T Consensus 97 ~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP-h~~~YCI-~tGw~N~~Ld~ 155 (178)
T PF10520_consen 97 FTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP-HDTNYCI-TTGWLNPPLDK 155 (178)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc-ccCCeEe-ecccchHHHHH
Confidence 3333445677755555221 1 112678999999999874 4889996 89999887643
No 11
>PLN02601 beta-carotene hydroxylase
Probab=92.79 E-value=0.096 Score=39.61 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHhcCCc---ccCCccc-cc-ccccCCcccccCcCCCCCCccCCC
Q 036463 63 VDDHSEL---WLPGNIF-HL-FFQNNTAYHDVHHQLKGLKYNYSQ 102 (119)
Q Consensus 63 ~~~Hsg~---~~p~~~~-~~-~~~~~~~~H~~HH~~~~~~~Nyg~ 102 (119)
.+.|.++ ++|+.+. +. .+-.-.+-|++||+...+..+||.
T Consensus 225 ffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 225 MFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 4677777 5665532 11 122236789999983223678885
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=1.7 Score=32.65 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCcccCCc--ccc-cccccCCcccccCcCCCCCCccCCCCCchhhhhh
Q 036463 52 VIFFCFAVIKTVDDHSELWLPGN--IFH-LFFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRL 111 (119)
Q Consensus 52 ~~~~~~~~~~~~~~Hsg~~~p~~--~~~-~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~l 111 (119)
.++.+++.-+--+.|.=..+|.. .++ .-++..-.+|+.||... .++||+- ..++|.+.
T Consensus 199 ~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aP-h~~yyCI-~tGw~N~~ 259 (293)
T KOG3011|consen 199 AICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAP-HNTYYCI-VSGWWNWV 259 (293)
T ss_pred HHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCc-cccceEE-eechhhch
Confidence 34555566666778855566632 111 11456678899999775 5889996 78888764
No 13
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=57.35 E-value=24 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=13.5
Q ss_pred cCCcccccCcCCCCCCccCC
Q 036463 82 NNTAYHDVHHQLKGLKYNYS 101 (119)
Q Consensus 82 ~~~~~H~~HH~~~~~~~Nyg 101 (119)
.+-..|..||.... +.+.|
T Consensus 134 ~GEg~HNnHHafP~-~ar~g 152 (178)
T cd03505 134 FGEGWHNNHHAFPG-DARNG 152 (178)
T ss_pred ccccccccccCCcc-hhhhC
Confidence 45679999998764 44554
No 14
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=32.67 E-value=17 Score=20.08 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=8.0
Q ss_pred hhchhhhhcC
Q 036463 2 LYRHIHSQHH 11 (119)
Q Consensus 2 ly~~~H~~HH 11 (119)
|||++|++|=
T Consensus 32 MFkqIHk~~~ 41 (47)
T PF02208_consen 32 MFKQIHKLHK 41 (47)
T ss_pred HHHHHHhhcc
Confidence 6888999874
No 15
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=29.50 E-value=97 Score=24.20 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.9
Q ss_pred CcccccCcCCCC-----CCccCCCCCchhhhhhcCcCC
Q 036463 84 TAYHDVHHQLKG-----LKYNYSQPFFSICDRLLGTHM 116 (119)
Q Consensus 84 ~~~H~~HH~~~~-----~~~Nyg~~~~~~wD~lfGT~~ 116 (119)
.+.|+.||.... .+.+-|. +|+-.=++|-|..
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF-~FsHvgWl~~~k~ 158 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGF-WFSHVGWLLDKKH 158 (321)
T ss_pred HhhhhhhccccccCCCCCCcccch-hhhhhhhHhccCC
Confidence 689999999853 3778887 8888877776654
No 16
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=26.04 E-value=25 Score=19.76 Aligned_cols=9 Identities=22% Similarity=0.803 Sum_probs=7.8
Q ss_pred hhchhhhhc
Q 036463 2 LYRHIHSQH 10 (119)
Q Consensus 2 ly~~~H~~H 10 (119)
|||.+|+.+
T Consensus 35 MfkqiHk~~ 43 (50)
T smart00459 35 MFKQIHRKG 43 (50)
T ss_pred HHHHHHccC
Confidence 789999987
No 17
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.33 E-value=2.1e+02 Score=18.92 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH---hcCCcHHHHHHHHHH---HHHHHHHhcCCc
Q 036463 28 EGLLLDTLGGALSFL---VSGMTARTTVIFFCF---AVIKTVDDHSEL 69 (119)
Q Consensus 28 e~ll~~~~~~~l~~~---l~~~~~~~~~~~~~~---~~~~~~~~Hsg~ 69 (119)
|.+...++...++.+ +.+..|+..+++.++ ..+.++..=.|.
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rsag~ 98 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRSAGK 98 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333344445544 367888766665544 444555555554
No 18
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=24.66 E-value=1.9e+02 Score=20.01 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=40.3
Q ss_pred hhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCc-------
Q 036463 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGN------- 74 (119)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~------- 74 (119)
.||+.|..||+.... ..+|--. .++...+.++ +..+..+..+.++..|.+.+-...
T Consensus 72 ~~r~~H~~HH~~~~~------~~Dpd~~---~~~~~W~~P~--------~~~~~~~~~~~~~~eH~~~~~~~~~~~~~tr 134 (175)
T cd03510 72 AYRRSHLKHHRHLGT------EDDPDLA---LYLLLWLVPL--------LTVFPLIGRIREIAEHAGVPADEDPDARNTR 134 (175)
T ss_pred HHHHHHHHHhCccCC------CCCCcHH---HHHHHHHHHH--------HHHHHHHHHHHHHHhccCCCCCCcchhhcCc
Confidence 489999999998532 2222211 1111222121 123344566677889988632110
Q ss_pred --cccc---ccc--cCCcccccCcCCC
Q 036463 75 --IFHL---FFQ--NNTAYHDVHHQLK 94 (119)
Q Consensus 75 --~~~~---~~~--~~~~~H~~HH~~~ 94 (119)
..+. .++ ..-.+|-.||...
T Consensus 135 ~~~~~~~~r~l~~p~~~~YH~eHHl~P 161 (175)
T cd03510 135 TTFGGWIERLLFAPHNINYHLEHHLFP 161 (175)
T ss_pred cccccHHHHHHHcccCCcHHHHHhCCc
Confidence 0111 122 3688999999986
No 19
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=23.65 E-value=44 Score=23.34 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=26.9
Q ss_pred cccCCcccccCcCCCCC---CccCCCCCchhhhhhcCcCCC
Q 036463 80 FQNNTAYHDVHHQLKGL---KYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~---~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
+-+..+.|.+-...+.+ +.|||.+-..+||+ ||+.+
T Consensus 70 LAv~~EDHpl~Y~~FEG~IP~g~YGaG~V~iWD~--Gty~~ 108 (156)
T TIGR02777 70 LAVHVEDHPLDYADFEGTIPKGEYGAGTVIVWDR--GTWEP 108 (156)
T ss_pred eeeEccCccchhccccccccCCccCCccEEEEeC--ceEEe
Confidence 45567888888776553 78999888999994 66653
Done!