Query 036463
Match_columns 119
No_of_seqs 112 out of 1025
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 45.2 8.4 0.00029 20.2 1.1 12 108-119 24-35 (43)
2 3nk4_C ZONA pellucida 3; ferti 15.1 61 0.0021 15.0 0.9 12 80-91 19-30 (30)
3 2jyl_A Capsid protein P24 (Ca) 13.8 35 0.0012 21.2 -0.2 32 84-117 3-34 (105)
4 3t76_A VANU, transcriptional r 12.9 59 0.002 19.0 0.7 18 83-102 2-19 (88)
5 1r7c_A Genome polyprotein; mem 12.2 52 0.0018 15.9 0.2 9 105-113 6-14 (31)
6 3p4h_A ATP-dependent DNA ligas 11.7 40 0.0014 21.5 -0.4 30 81-110 46-78 (118)
7 3p43_A Putative uncharacterize 11.6 46 0.0016 22.2 -0.2 31 80-110 72-105 (152)
8 2ehj_A Uracil phosphoribosyltr 10.6 64 0.0022 22.3 0.3 7 108-114 201-207 (208)
9 1o5o_A Uracil phosphoribosyltr 10.5 64 0.0022 22.5 0.3 6 6-11 6-11 (221)
10 3dmp_A Uracil phosphoribosyltr 10.5 61 0.0021 22.6 0.2 6 109-114 210-215 (217)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=45.20 E-value=8.4 Score=20.24 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=9.2
Q ss_pred hhhhcCcCCCCC
Q 036463 108 CDRLLGTHMSYQ 119 (119)
Q Consensus 108 wD~lfGT~~~~~ 119 (119)
-|++||+-++++
T Consensus 24 ~d~iFG~I~pp~ 35 (43)
T 2vgp_C 24 VDRMYGTIDSPK 35 (43)
T ss_dssp HHHHTTTSCCCC
T ss_pred HHHHcCCCCCcC
Confidence 588999887763
No 2
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=15.11 E-value=61 Score=15.02 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=6.8
Q ss_pred cccCCcccccCc
Q 036463 80 FQNNTAYHDVHH 91 (119)
Q Consensus 80 ~~~~~~~H~~HH 91 (119)
.+.++.+|.-||
T Consensus 19 vllsadhhhhhh 30 (30)
T 3nk4_C 19 VLLSADHHHHHH 30 (30)
T ss_dssp EEBCSCTTCCCC
T ss_pred EEecccccccCC
Confidence 355666665554
No 3
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=13.79 E-value=35 Score=21.20 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=6.8
Q ss_pred CcccccCcCCCCCCccCCCCCchhhhhhcCcCCC
Q 036463 84 TAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 84 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
..+|.-||+.+....-|. + .++||.-=|...+
T Consensus 3 ~~~~~~~~~~~~~~~~~s-p-~si~~IkQGpKEP 34 (105)
T 2jyl_A 3 SSHHHHHHSSGLVPRGSH-M-TSILDIRQGPKEP 34 (105)
T ss_dssp ---------------------CCGGGCCCCSSSC
T ss_pred cccccccccCcceeeeec-C-cchhhhhcCCCCc
Confidence 456667777654333444 3 5666655444443
No 4
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=12.89 E-value=59 Score=18.98 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=3.2
Q ss_pred CCcccccCcCCCCCCccCCC
Q 036463 83 NTAYHDVHHQLKGLKYNYSQ 102 (119)
Q Consensus 83 ~~~~H~~HH~~~~~~~Nyg~ 102 (119)
+..+|.-||+.++. |++.
T Consensus 2 ~~~~~~~~~~~~~~--~~~~ 19 (88)
T 3t76_A 2 GSSHHHHHHSSGRE--NLYF 19 (88)
T ss_dssp ------------CC--CCSC
T ss_pred CccccccccCCCcc--chhh
Confidence 35567778887753 6653
No 5
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=12.18 E-value=52 Score=15.88 Aligned_cols=9 Identities=22% Similarity=0.146 Sum_probs=6.3
Q ss_pred chhhhhhcC
Q 036463 105 FSICDRLLG 113 (119)
Q Consensus 105 ~~~wD~lfG 113 (119)
-.+||+++-
T Consensus 6 ~~iwdWvct 14 (31)
T 1r7c_A 6 RDIWDWICE 14 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 457888863
No 6
>3p4h_A ATP-dependent DNA ligase, N-terminal domain prote; phosphoesterase, metalloenzyme, manganese, beta barrel, PHOS hydrolase; HET: PEG; 1.10A {Candidatus korarchaeum cryptofilum} PDB: 3ta5_A 3ta7_A*
Probab=11.71 E-value=40 Score=21.50 Aligned_cols=30 Identities=20% Similarity=-0.014 Sum_probs=22.4
Q ss_pred ccCCcccccCcCCCCC---CccCCCCCchhhhh
Q 036463 81 QNNTAYHDVHHQLKGL---KYNYSQPFFSICDR 110 (119)
Q Consensus 81 ~~~~~~H~~HH~~~~~---~~Nyg~~~~~~wD~ 110 (119)
..-.+.|.+-...+.+ +.+||.+-..+||+
T Consensus 46 Av~teDHpl~Y~~fEG~Ip~g~yG~G~v~iwD~ 78 (118)
T 3p4h_A 46 AIETEDHDLSYIDFEGRIPEGMYGAGEVKIWDS 78 (118)
T ss_dssp EEEEEEECGGGGGCCEEECTTSTTCEEEEEEEE
T ss_pred eEEcCCCCccccceecccCCCCcCCceEEEEec
Confidence 3457788887766543 77899878899997
No 7
>3p43_A Putative uncharacterized protein; phosphoesterase, metalloenzyme, hydrolase, manganese, beta B; 2.10A {Methanosarcina barkeri str}
Probab=11.58 E-value=46 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.038 Sum_probs=23.7
Q ss_pred cccCCcccccCcCCCCC---CccCCCCCchhhhh
Q 036463 80 FQNNTAYHDVHHQLKGL---KYNYSQPFFSICDR 110 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~---~~Nyg~~~~~~wD~ 110 (119)
+-.-.+.|.+-...+.+ +.+||.+-..+||+
T Consensus 72 LAV~teDHpl~Y~~FEG~Ip~g~yG~G~V~iWD~ 105 (152)
T 3p43_A 72 LAIETEDHPLAYADFEGEIPAGEYGAGKVEIWDR 105 (152)
T ss_dssp EEEECCCEEGGGGGCCEEECTTSTTCEEEEEEEE
T ss_pred eeEEcCCCCcccccccccCCCCccCCceEEEEeC
Confidence 34567888887776653 77999878899997
No 8
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=10.56 E-value=64 Score=22.28 Aligned_cols=7 Identities=43% Similarity=0.919 Sum_probs=5.5
Q ss_pred hhhhcCc
Q 036463 108 CDRLLGT 114 (119)
Q Consensus 108 wD~lfGT 114 (119)
=||+|||
T Consensus 201 GDR~fgt 207 (208)
T 2ehj_A 201 GDKIFGT 207 (208)
T ss_dssp HHHHHTC
T ss_pred HHhhcCC
Confidence 4888887
No 9
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=10.53 E-value=64 Score=22.54 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=0.0
Q ss_pred hhhhcC
Q 036463 6 IHSQHH 11 (119)
Q Consensus 6 ~H~~HH 11 (119)
+|..||
T Consensus 6 ~~~~~~ 11 (221)
T 1o5o_A 6 IHHHHH 11 (221)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 10
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=10.53 E-value=61 Score=22.56 Aligned_cols=6 Identities=83% Similarity=1.359 Sum_probs=0.0
Q ss_pred hhhcCc
Q 036463 109 DRLLGT 114 (119)
Q Consensus 109 D~lfGT 114 (119)
||+|||
T Consensus 210 DR~fgt 215 (217)
T 3dmp_A 210 DRLFGT 215 (217)
T ss_dssp HHHHC-
T ss_pred HhhcCC
Done!