BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036464
(226 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449432271|ref|XP_004133923.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis
sativus]
gi|449480051|ref|XP_004155785.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis
sativus]
Length = 346
Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 161/276 (58%), Gaps = 84/276 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
MEV +LPISAT RGKLIS+GYT+LSS+ S S SD++R
Sbjct: 1 MEVGRLPISATLRGKLISSGYTTLSSLASVSPSDLARELEISNNEAFDVLKLASHGRGLD 60
Query: 38 ----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
G +TAWDML +EQ + RITTSCADLDN+LGGGI EVTEIGGVPGIGK
Sbjct: 61 RSDGSGAIVNGAETAWDMLHKEQ-FIPRITTSCADLDNLLGGGINVSEVTEIGGVPGIGK 119
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
TQLGIQLAVNVQIP FGG+GGKA+YI F
Sbjct: 120 TQLGIQLAVNVQIPGAFGGVGGKAVYIDTEGSFMVERALQIAEACIEDMSDYSVLLKKNA 179
Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
YTEQ A+INYLDKF++EHKDVKVVI+DS+ FHFR F
Sbjct: 180 IPHQIQIEPKDILENIFYFRVCSYTEQIALINYLDKFITEHKDVKVVIVDSVTFHFRQNF 239
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DLALRTR+LS +ALK M LAKKFSLA++ N TT
Sbjct: 240 DDLALRTRLLSEMALKFMKLAKKFSLAVVLFNQVTT 275
>gi|225454007|ref|XP_002280748.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera]
gi|296089196|emb|CBI38899.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/278 (52%), Positives = 161/278 (57%), Gaps = 84/278 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTS--------------------------LSSICSASSSD 34
ME+++LPISA+QRGKLISAGYTS L + S D
Sbjct: 1 MELARLPISASQRGKLISAGYTSLSSLSSLSPSTLAQDLKISDNEALEILRVVSQGSRLD 60
Query: 35 -------ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
I G QTAWDML EE ESL ITTSC DLD+ILGGGI C+EVTEIGGVPGIGK
Sbjct: 61 KPDGSHAIVNGAQTAWDMLHEE-ESLKCITTSCVDLDDILGGGIKCKEVTEIGGVPGIGK 119
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
TQLGIQLAVNVQIPV +GGLGGKAIYI F
Sbjct: 120 TQLGIQLAVNVQIPVNYGGLGGKAIYIDTEGSFMLERSLQIAEACIEDMSGNSDFLQKDF 179
Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
YTEQ A+INYLDKF+SEHKDV VVIIDS+ FHFR F
Sbjct: 180 QSCQVKAQPKDFLQNIFYFRVCSYTEQIAMINYLDKFISEHKDVNVVIIDSVTFHFRQDF 239
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
DLALRTR+LSG+ALKLM LAKKFSLA++ N TT +
Sbjct: 240 DDLALRTRLLSGMALKLMKLAKKFSLAVVLLNQVTTKH 277
>gi|357469749|ref|XP_003605159.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355506214|gb|AES87356.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 347
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 163/280 (58%), Gaps = 85/280 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME+ LPISA++RGKL++AGYT+L SI S++ ++R
Sbjct: 1 MEIGMLPISASKRGKLLAAGYTTLHSILRTSTTHLARDIEVSESEALEILNFATRSSDLD 60
Query: 38 -----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
G QTAWDML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIG
Sbjct: 61 KSSGSNANVIHGGQTAWDMLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIG 119
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------- 120
KTQ+GIQLAVNVQIP+++GGLGGKAIYI F
Sbjct: 120 KTQIGIQLAVNVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKD 179
Query: 121 ------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR
Sbjct: 180 NQAFGVKMHPNSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQD 239
Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
F D+ALRTR+L ++LKLM LAK FSLA++ N TT ++
Sbjct: 240 FDDMALRTRLLGEMSLKLMKLAKNFSLAVVMLNQVTTKHI 279
>gi|357477597|ref|XP_003609084.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|357477663|ref|XP_003609117.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510139|gb|AES91281.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510172|gb|AES91314.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 347
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 161/280 (57%), Gaps = 85/280 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME+ LPISA++RGKL++AGYT+L SI S++ + R
Sbjct: 1 MEIGMLPISASKRGKLLAAGYTTLHSILRTSTTHLVRDIEVSESEALEILNFATRSNDLD 60
Query: 38 -----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
G QTAWDML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIG
Sbjct: 61 KSSGSNTNVIDGGQTAWDMLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIG 119
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------- 120
KTQ+GIQLAVNVQIP+++GGLGGKAIYI F
Sbjct: 120 KTQIGIQLAVNVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKD 179
Query: 121 ------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR
Sbjct: 180 NQAFGVKMHPNSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQD 239
Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
F D+ALRTR+L ++LKLM LAK SLA++ N TT ++
Sbjct: 240 FDDMALRTRLLGEMSLKLMKLAKNLSLAVVMLNQVTTKHI 279
>gi|255541250|ref|XP_002511689.1| DNA repair and recombination protein radA, putative [Ricinus
communis]
gi|223548869|gb|EEF50358.1| DNA repair and recombination protein radA, putative [Ricinus
communis]
Length = 346
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 144/278 (51%), Positives = 164/278 (58%), Gaps = 84/278 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
MEVS+LP+SA+QRGKLI AGYTSLSS+ S S SD++R
Sbjct: 1 MEVSRLPLSASQRGKLILAGYTSLSSLSSVSPSDLARDLKISDSEALEILKVASRNSRLD 60
Query: 38 ----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
G Q AW+ML EE SL RITTSCADLDNILGGGI C+EVTEIGG+PGIGK
Sbjct: 61 GMEGCHAVINGAQNAWEMLHEES-SLTRITTSCADLDNILGGGITCKEVTEIGGLPGIGK 119
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
TQLGIQLAVNVQIP GGLGGKA+YI F
Sbjct: 120 TQLGIQLAVNVQIPPYCGGLGGKAVYIDTEGSFMVERVLQVAEASVEDMLEYSRFLRRDL 179
Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
YTEQ A++NYL+KF+SEH+DVKVVIIDSI FHFR F
Sbjct: 180 QTCQVATQSKDILENIYYFRVCSYTEQVALVNYLEKFISEHRDVKVVIIDSITFHFRQDF 239
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
DLALRTRVLSG+ALKLM +AK FSLA++ N TT +
Sbjct: 240 DDLALRTRVLSGMALKLMKIAKSFSLAVVLLNQVTTKH 277
>gi|18406752|ref|NP_566040.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
gi|55583940|sp|Q8GXF0.2|RA51C_ARATH RecName: Full=DNA repair protein RAD51 homolog 3; AltName: Full=DNA
repair-recombination protein RAD51C; Short=AtRAD51C
gi|11064475|emb|CAC14294.1| Rad51C protein [Arabidopsis thaliana]
gi|15425731|dbj|BAB64343.1| AtRAD51Calpha [Arabidopsis thaliana]
gi|20196911|gb|AAB82635.2| putative RAD51C-like DNA repair protein [Arabidopsis thaliana]
gi|330255439|gb|AEC10533.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
Length = 363
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292
>gi|10944745|emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]
Length = 363
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQ 200
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292
>gi|26451592|dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombination factor
[Arabidopsis thaliana]
Length = 342
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 1 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 60
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 61 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 119
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 120 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 179
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR + DLA
Sbjct: 180 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 239
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 240 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 271
>gi|19310403|gb|AAL84941.1| At2g45280/F4L23.21 [Arabidopsis thaliana]
Length = 363
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/272 (50%), Positives = 160/272 (58%), Gaps = 80/272 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ A++++L+KF+SE+KDVKVVI+DSI FHFR + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVSHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292
>gi|334184917|ref|NP_001189749.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
gi|330255440|gb|AEC10534.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
Length = 387
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 160/296 (54%), Gaps = 104/296 (35%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRG---------------------- 38
ME +LP+S + RGKLISAGYT LSSI S SSSD++RG
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARGKFLLYPNLRRLESVARFSLIST 81
Query: 39 -------------------------------TQTAWDMLQEEQESLARITTSCADLDNIL 67
+ AWDML EE ESL RITTSC+DLDNIL
Sbjct: 82 DNANITEEEAFEILKLANQSCCNGSRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNIL 140
Query: 68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------- 120
GGGI CR+VTEIGGVPGIGKTQ+GIQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 GGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQ 200
Query: 121 -------------------------------------------YTEQSAVINYLDKFVSE 137
YTEQ A++N+L+KF+SE
Sbjct: 201 IAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISE 260
Query: 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+KDVKVVI+DSI FHFR + DLA RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 261 NKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 316
>gi|218188518|gb|EEC70945.1| hypothetical protein OsI_02540 [Oryza sativa Indica Group]
Length = 349
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 156/278 (56%), Gaps = 86/278 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICS------------------------------- 29
ME++ LPI+ + R L++AGY+SL+++ +
Sbjct: 1 MEIADLPIATSHRANLLAAGYSSLAALSAASPPRLARDLSIEVHEAEEILKVAVGANKSK 60
Query: 30 ----ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGI 85
S+S + +G Q AWDML +EQ S I T ADL+NILGGGI C+EVTEIGGVPG+
Sbjct: 61 GADGPSTSSVLKGAQNAWDMLSDEQ-SRRHINTGSADLNNILGGGIHCKEVTEIGGVPGV 119
Query: 86 GKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------- 120
GKTQLGIQLA+NVQIPVE+GGLGGKA+YI F
Sbjct: 120 GKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEYFPHCHD 179
Query: 121 -------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
YTEQ AVINYL+KF+ EHKDV++VIIDS+ FHFR
Sbjct: 180 KAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQ 239
Query: 156 GFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F D+ALRTRVLSG++LKLM L+K ++LA++ N TT
Sbjct: 240 DFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVTT 277
>gi|115437842|ref|NP_001043394.1| Os01g0578000 [Oryza sativa Japonica Group]
gi|13161340|dbj|BAB32931.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|20521295|dbj|BAB91810.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|113532925|dbj|BAF05308.1| Os01g0578000 [Oryza sativa Japonica Group]
gi|215686387|dbj|BAG87648.1| unnamed protein product [Oryza sativa Japonica Group]
gi|343466352|gb|AEM43048.1| RAD51C-1 [Oryza sativa]
Length = 349
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 156/278 (56%), Gaps = 86/278 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICS------------------------------- 29
ME++ LPI+ + R L++AGY+SL+++ +
Sbjct: 1 MEIADLPIATSHRANLLAAGYSSLAALSAASPPRLARDLSIEVHEAEEILKVAVGANKSK 60
Query: 30 ----ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGI 85
S+S + +G Q AWDML +EQ S I T ADL+NILGGGI C+EVTEIGGVPG+
Sbjct: 61 GADGPSTSSVLKGVQNAWDMLSDEQ-SRRHINTGSADLNNILGGGIHCKEVTEIGGVPGV 119
Query: 86 GKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------- 120
GKTQLGIQLA+NVQIPVE+GGLGGKA+YI F
Sbjct: 120 GKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEYFPHCHD 179
Query: 121 -------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
YTEQ AVINYL+KF+ EHKDV++VIIDS+ FHFR
Sbjct: 180 KAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQ 239
Query: 156 GFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F D+ALRTRVLSG++LKLM L+K ++LA++ N TT
Sbjct: 240 DFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVTT 277
>gi|222618725|gb|EEE54857.1| hypothetical protein OsJ_02328 [Oryza sativa Japonica Group]
Length = 349
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 154/278 (55%), Gaps = 86/278 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICS------------------------------- 29
ME++ P++ + R L++AGY+SL++ +
Sbjct: 1 MEIADFPMATSHRANLLAAGYSSLAAFSAASPPRLARDLSIEVHEAEEILKVAVGANKSK 60
Query: 30 ----ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGI 85
S+S + +G Q AWDML +EQ S I T ADL+NILGGGI C+EVTEIGGVPG+
Sbjct: 61 GADGPSTSSVLKGVQNAWDMLSDEQ-SRRHINTGSADLNNILGGGIHCKEVTEIGGVPGV 119
Query: 86 GKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------- 120
GKTQLGIQLA+NVQIPVE+GGLGGKA+YI F
Sbjct: 120 GKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEYFPHCHD 179
Query: 121 -------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
YTEQ AVINYL+KF+ EHKDV++VIIDS+ FHFR
Sbjct: 180 KAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQ 239
Query: 156 GFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F D+ALRTRVLSG++LKLM L+K ++LA++ N TT
Sbjct: 240 DFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVTT 277
>gi|357135308|ref|XP_003569252.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Brachypodium
distachyon]
Length = 309
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 131/211 (62%), Gaps = 51/211 (24%)
Query: 33 SDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
S + RG Q AWD+L +EQ S ITT DL++ILGGGI C+EVTEIGGVPG+GKTQLGI
Sbjct: 28 SGVLRGAQNAWDLLSDEQ-SQKHITTGSGDLNSILGGGIHCKEVTEIGGVPGVGKTQLGI 86
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------------- 120
QLA+NVQIPVE+GGLGGKA+YI F
Sbjct: 87 QLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDIMEYFPYRHDKASSGRE 146
Query: 121 ------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162
YTEQ AVINYL+KF+ EHKDV+++IIDS+ FHFR F DLAL
Sbjct: 147 HLQPERFLADIYYFRVCSYTEQIAVINYLEKFLGEHKDVRIIIIDSVTFHFRQDFDDLAL 206
Query: 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLSG++LKLM L+K +++A++ N TT
Sbjct: 207 RTRVLSGLSLKLMKLSKTYNVAVVLLNQVTT 237
>gi|224127362|ref|XP_002320055.1| predicted protein [Populus trichocarpa]
gi|222860828|gb|EEE98370.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 129/204 (63%), Gaps = 50/204 (24%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
Q AWD+L EE+ + R+TTSCADLD+ILGGGI C++VTEIGGVPGIGKTQLGIQLAVNVQ
Sbjct: 9 QNAWDLLHEERSLMTRLTTSCADLDDILGGGISCKQVTEIGGVPGIGKTQLGIQLAVNVQ 68
Query: 100 IPVEFGGLGGKAIYIGK---------------------------------CLG------- 119
+P GGLGGKAIYI C G
Sbjct: 69 MPSFCGGLGGKAIYIDTEGSFMGERAQEIAEACVEDISEYKRFLHKDSQACQGEIQGKDV 128
Query: 120 ----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
YTEQ A+INYL++F+S+HKDVK+VIIDS+AFHFR GF DLALRTR+L
Sbjct: 129 LQNIYFFRICSYTEQIALINYLEEFISDHKDVKIVIIDSVAFHFRQGFEDLALRTRILGE 188
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+ALKL+ LAK +LA++ N TT
Sbjct: 189 MALKLVKLAKMCNLAVVLLNQVTT 212
>gi|124360172|gb|ABD33114.2| RecA bacterial DNA recombination protein [Medicago truncatula]
Length = 269
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 127/202 (62%), Gaps = 51/202 (25%)
Query: 45 MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
ML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIGKTQ+GIQLAVNVQIP+++
Sbjct: 1 MLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDY 59
Query: 105 GGLGGKAIYIGKCLGF-------------------------------------------- 120
GGLGGKAIYI F
Sbjct: 60 GGLGGKAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHPNSILENIF 119
Query: 121 ------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKL 174
YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR F D+ALRTR+L ++LKL
Sbjct: 120 YFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMALRTRLLGEMSLKL 179
Query: 175 MNLAKKFSLALLEPNLATTANL 196
M LAK FSLA++ N TT ++
Sbjct: 180 MKLAKNFSLAVVMLNQVTTKHI 201
>gi|388493808|gb|AFK34970.1| unknown [Medicago truncatula]
Length = 269
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 127/205 (61%), Gaps = 51/205 (24%)
Query: 45 MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
ML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIGKTQ+GIQLAVNVQIP+++
Sbjct: 1 MLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDY 59
Query: 105 GGLGGKAIYIGKCLGF-------------------------------------------- 120
GGLGGKAIYI F
Sbjct: 60 GGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQAFGVKMHPNSILENIF 119
Query: 121 ------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKL 174
YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR F D+ALRTR+L ++LKL
Sbjct: 120 YFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMALRTRLLGEMSLKL 179
Query: 175 MNLAKKFSLALLEPNLATTANLAES 199
M LAK SLA++ N TT ++ S
Sbjct: 180 MKLAKNLSLAVVMLNQVTTKHIESS 204
>gi|226494109|ref|NP_001150457.1| DNA repair protein RAD51 [Zea mays]
gi|195639406|gb|ACG39171.1| DNA repair protein RAD51 [Zea mays]
gi|224030343|gb|ACN34247.1| unknown [Zea mays]
gi|414881531|tpg|DAA58662.1| TPA: DNA repair protein RAD51 [Zea mays]
Length = 294
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 125/206 (60%), Gaps = 51/206 (24%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G Q AWDM +E S ITT DL++ILGGGI C+EVTEIGGVPG+GKTQLGIQLA+N
Sbjct: 18 GAQNAWDMFSDEL-SQKHITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAIN 76
Query: 98 VQIPVEFGGLGGKAIYIGKCLGF------------------------------------- 120
VQIPVE GGLGGKA+YI F
Sbjct: 77 VQIPVECGGLGGKAVYIDTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPE 136
Query: 121 -------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167
YTEQ AVINY++KF+ EHKDV++VIIDS+ FHFR F DLALRTRVL
Sbjct: 137 RFLADIYYFRICSYTEQIAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVL 196
Query: 168 SGIALKLMNLAKKFSLALLEPNLATT 193
SG++LKLM +AK ++LA++ N TT
Sbjct: 197 SGLSLKLMKIAKTYNLAVVLLNQVTT 222
>gi|294460653|gb|ADE75901.1| unknown [Picea sitchensis]
Length = 346
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/277 (41%), Positives = 148/277 (53%), Gaps = 85/277 (30%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME LP++ + R +L+SAGY +L S + S D++R
Sbjct: 1 METICLPLAPSHRARLVSAGYRTLDSFNNLSPLDLARDIGVSSEEALDILKVAWRTKAID 60
Query: 38 -----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
G +TAWD+L EE+ ++ RI T C DLD ILGGGI +EVTE+GGVPGIG
Sbjct: 61 GNSPKGANLLAGAKTAWDLLCEEK-TMKRIVTFCEDLDVILGGGICRKEVTEVGGVPGIG 119
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CLG------------ 119
KTQLGIQLA+NVQIPV+ GGLGG+AIYI C+
Sbjct: 120 KTQLGIQLAINVQIPVDLGGLGGQAIYIDTEGSFMVERVCQIAKACIEKLKDIPCTSERK 179
Query: 120 -----------------FY------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
FY TEQ AVINY+DKF+ E VK++I+DS+ FHFR
Sbjct: 180 VEECHTKLKVDDFLSNIFYFRACNYTEQIAVINYMDKFIEERDKVKIIIVDSVTFHFRQD 239
Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F DLALRTR+L G++ KLM LA+++ A++ N TT
Sbjct: 240 FEDLALRTRLLGGMSQKLMRLAEEYDTAVVLMNQVTT 276
>gi|197092363|gb|ACH42254.1| RAD51C protein [Triticum aestivum]
Length = 270
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 124/199 (62%), Gaps = 51/199 (25%)
Query: 45 MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
ML EEQ S ITT DL+ ILGGGI C+EVTEIGGVPGIGKTQLGIQLA+NVQIPV++
Sbjct: 1 MLSEEQ-SQKHITTGSGDLNGILGGGIHCKEVTEIGGVPGIGKTQLGIQLAINVQIPVDY 59
Query: 105 GGLGGKAIYIGK---------------CL----------------------------GFY 121
GGLGGKAIYI C+ G Y
Sbjct: 60 GGLGGKAIYIDTEGSFMVERVYQIAEGCISDIMEYFPCHHDKSSSGQENLQPESFLAGIY 119
Query: 122 -------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKL 174
TEQ AVINYL+KF+ EHKDV++VIIDS+ FHFR F DLALRTRVLSG++LKL
Sbjct: 120 YFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDLALRTRVLSGLSLKL 179
Query: 175 MNLAKKFSLALLEPNLATT 193
M L+K ++LA++ N TT
Sbjct: 180 MKLSKSYNLAVVLLNQVTT 198
>gi|224028841|gb|ACN33496.1| unknown [Zea mays]
gi|414881529|tpg|DAA58660.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 270
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 119/195 (61%), Gaps = 50/195 (25%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
++ S ITT DL++ILGGGI C+EVTEIGGVPG+GKTQLGIQLA+NVQIPVE GGLG
Sbjct: 4 DELSQKHITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLG 63
Query: 109 GKAIYIGKCLGF------------------------------------------------ 120
GKA+YI F
Sbjct: 64 GKAVYIDTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRI 123
Query: 121 --YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178
YTEQ AVINY++KF+ EHKDV++VIIDS+ FHFR F DLALRTRVLSG++LKLM +A
Sbjct: 124 CSYTEQIAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIA 183
Query: 179 KKFSLALLEPNLATT 193
K ++LA++ N TT
Sbjct: 184 KTYNLAVVLLNQVTT 198
>gi|16444955|dbj|BAB70685.1| AtRAD51Cbeta [Arabidopsis thaliana]
Length = 241
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 120/220 (54%), Gaps = 80/220 (36%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDV 141
YTEQ A++N+L+KF+SE+KDV
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDV 240
>gi|414881528|tpg|DAA58659.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 268
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 115/193 (59%), Gaps = 48/193 (24%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
++ S ITT DL++ILGGGI C+EVTEIGGVPG+GKTQLGIQLA+NVQIPVE GGLG
Sbjct: 4 DELSQKHITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLG 63
Query: 109 GKAIYIGKCLGF---------------------YTEQSAVINYL--DKFVSE-------- 137
GKA+YI + + S+V L ++F+++
Sbjct: 64 GKAVYIEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICS 123
Query: 138 -----------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK 180
HKDV++VIIDS+ FHFR F DLALRTRVLSG++LKLM +AK
Sbjct: 124 YTEQIAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKT 183
Query: 181 FSLALLEPNLATT 193
++LA++ N TT
Sbjct: 184 YNLAVVLLNQVTT 196
>gi|52075732|dbj|BAD44952.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|52077562|dbj|BAD45123.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|215697041|dbj|BAG91035.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 309
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 97/164 (59%), Gaps = 50/164 (30%)
Query: 80 GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------- 120
GGVPG+GKTQLGIQLA+NVQIPVE+GGLGGKA+YI F
Sbjct: 74 GGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEY 133
Query: 121 -------------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSI 149
YTEQ AVINYL+KF+ EHKDV++VIIDS+
Sbjct: 134 FPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQIAVINYLEKFLGEHKDVRIVIIDSV 193
Query: 150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
FHFR F D+ALRTRVLSG++LKLM L+K ++LA++ N TT
Sbjct: 194 TFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVTT 237
>gi|351727465|ref|NP_001235626.1| uncharacterized protein LOC100527406 [Glycine max]
gi|255632274|gb|ACU16495.1| unknown [Glycine max]
Length = 160
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 90/134 (67%), Gaps = 10/134 (7%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSS------DISRGTQTAWDMLQEEQESLA 54
MEV LPIS ++RGKL++AGYT+L +I AS + D+S T L + +L
Sbjct: 1 MEVGMLPISTSKRGKLLAAGYTTLDAIARASPTHLARDIDVSESEATEILNLASKPSALE 60
Query: 55 RI----TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
R T DLDNILGGGI C+EVTEIGGVPGIGKTQ+GIQLAVNVQIP E+GGLGGK
Sbjct: 61 RPNGSHTAVVGDLDNILGGGIKCKEVTEIGGVPGIGKTQIGIQLAVNVQIPQEYGGLGGK 120
Query: 111 AIYIGKCLGFYTEQ 124
AIYI F E+
Sbjct: 121 AIYIDTEGSFMVER 134
>gi|390343400|ref|XP_788113.2| PREDICTED: DNA repair protein RAD51 homolog 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 415
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 49/241 (20%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSS----ICSASSSDISRGTQTAWDMLQEEQESLARI 56
+E S L + +G S + ++S + S S + T TA++MLQ+EQ SL I
Sbjct: 65 LEKSHLEDKGSPKGSSPSTRSSDVASSKLPVTSTSGGGDGKRTATAFEMLQKEQ-SLPPI 123
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI-- 114
T C +LD +LGGG+ ++TEI G PG+GKTQ IQL V+VQIP GG+ G+A+YI
Sbjct: 124 ITFCEELDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYIDT 183
Query: 115 --------------------------GKCLGFYTEQS----------------AVINYLD 132
+ F TE+ A++N L
Sbjct: 184 EGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELLALVNLLP 243
Query: 133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
+F+S++ VK++I+DSIAFHFRH F D++LRTR+L+G+A + +A +++LA++ N T
Sbjct: 244 EFLSKNPKVKLIIVDSIAFHFRHDFDDMSLRTRLLNGLAQNFIRIATQYNLAVVLTNQMT 303
Query: 193 T 193
T
Sbjct: 304 T 304
>gi|390343398|ref|XP_003725868.1| PREDICTED: DNA repair protein RAD51 homolog 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 415
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 49/241 (20%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSS----ICSASSSDISRGTQTAWDMLQEEQESLARI 56
+E S L + +G S + ++S + S S + T TA++MLQ+EQ SL I
Sbjct: 65 LEKSHLEDKGSPKGSSPSTRSSDVASSKLPVTSTSGGGDGKRTATAFEMLQKEQ-SLPPI 123
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI-- 114
T C +LD +LGGG+ ++TEI G PG+GKTQ IQL V+VQIP GG+ G+A+YI
Sbjct: 124 ITFCEELDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYIDT 183
Query: 115 --------------------------GKCLGFYTEQS----------------AVINYLD 132
+ F TE+ A++N L
Sbjct: 184 EGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELLALVNLLP 243
Query: 133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
+F+S++ VK++I+DSIAFHFRH F D++LRTR+L+G+A + +A +++LA++ N T
Sbjct: 244 EFLSKNPKVKLIIVDSIAFHFRHDFDDMSLRTRLLNGLAQNFIRIATQYNLAVVLTNQMT 303
Query: 193 T 193
T
Sbjct: 304 T 304
>gi|440797758|gb|ELR18834.1| RAD51, putative [Acanthamoeba castellanii str. Neff]
Length = 348
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 124/265 (46%), Gaps = 83/265 (31%)
Query: 2 EVSKLPISATQRGKLISAGYTSL---------------------------------SSIC 28
+++ LP+ T + K++ AG+ + S+
Sbjct: 8 DITTLPLPPTLKNKIVQAGFRDVRDFDGYRPVELAKELRVTQEEALSILRTIKENTSATT 67
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
+A + + +TA++M+ + + R T C D+D +LG G+ ++TE GVPGIGKT
Sbjct: 68 AAPAGSLFAEGKTAFEMITQTENRFVR--TMCEDIDQMLGAGVPVGQLTEFCGVPGIGKT 125
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGF---------------- 120
Q+G+QLA +VQIP EFGG GG IYIG + F
Sbjct: 126 QIGMQLATSVQIPKEFGGSGGHCIYIGSFVVERVMEMAQAIIDFMQQQAQASNDPGKVQA 185
Query: 121 --------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160
Y EQ A++N L F+ EH +V++V+IDSI FHFRH F D
Sbjct: 186 AAALTVEDMLRHIHYYRIHDYVEQIALLNTLPAFLKEHPEVQLVVIDSITFHFRHDFDDY 245
Query: 161 ALRTRVLSGIALKLMNLAKKFSLAL 185
RTRVL+ +A LM+LA +F LA+
Sbjct: 246 MARTRVLTSMAQTLMSLADEFRLAV 270
>gi|62858301|ref|NP_001016923.1| RAD51 homolog C [Xenopus (Silurana) tropicalis]
gi|58477631|gb|AAH89630.1| MGC107796 protein [Xenopus (Silurana) tropicalis]
gi|89269806|emb|CAJ81518.1| RAD51 homolog C (S. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 129/272 (47%), Gaps = 81/272 (29%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR------------------------ 37
+V P++ R KLI+ G+ ++ +I S+ ++S+
Sbjct: 4 DVGSFPLAPALRVKLIATGFRTVETILEFSAVELSKEAGISNEEALEVLQIVKGEAQSSS 63
Query: 38 -----GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
TA+D+L +EQ S + T C+ LD ILGGGI ++TEI GVPG+GKTQL +
Sbjct: 64 SCQIIQKHTAFDLLGQEQ-SQGFVITFCSALDEILGGGIPVAKITEICGVPGVGKTQLCM 122
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------------- 120
QLAV+VQIP FGG+ G+ ++I F
Sbjct: 123 QLAVDVQIPECFGGVAGETVFIDTECSFRLERLMDIANACVQHCNLIAQGHQDKDHIKAM 182
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
Y E A IN L F+S H VK+V+IDSIAF FRH F DL+
Sbjct: 183 QTFTLNEILSQIYYFSCHDYIELLAQINLLPDFLSSHPKVKLVVIDSIAFPFRHSFEDLS 242
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G +L++LA +LA++ N TT
Sbjct: 243 LRTRLLNGFGQQLISLAHNCNLAVVLTNQMTT 274
>gi|54400704|ref|NP_001006101.1| DNA repair protein RAD51 homolog 3 [Danio rerio]
gi|53734042|gb|AAH83214.1| Rad51 homolog C (S. cerevisiae) [Danio rerio]
gi|182888768|gb|AAI64186.1| Rad51c protein [Danio rerio]
Length = 362
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 111/201 (55%), Gaps = 49/201 (24%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA D+L +EQ +L I T C+ LD+ +GGG+ + TEI G PG+GKTQL +QLAV+VQI
Sbjct: 72 TALDLLHQEQ-TLGSIVTFCSGLDDAIGGGVPVGKTTEICGAPGVGKTQLCMQLAVDVQI 130
Query: 101 PVEFGGLGGKAIYIG-------------------KC--LGFYTEQS-------------- 125
PV FGGLGGKA+YI C L TEQ
Sbjct: 131 PVFFGGLGGKALYIDTEGSFLVQRVADMAEAAVQHCTLLAEDTEQKGALEELNVEKILSN 190
Query: 126 -------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172
A + L F+SEH +V++V+IDSIAF FRH F DL+ RTR+L+G+A
Sbjct: 191 LFLVRCHDYVKLLAEVYLLPDFLSEHPEVRLVVIDSIAFPFRHDFEDLSQRTRLLNGLAQ 250
Query: 173 KLMNLAKKFSLALLEPNLATT 193
+L+ LA + +A++ N TT
Sbjct: 251 QLIQLATQHRVAVVLTNQMTT 271
>gi|291225492|ref|XP_002732740.1| PREDICTED: RAD51 homolog c-like [Saccoglossus kowalevskii]
Length = 357
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 127/255 (49%), Gaps = 69/255 (27%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------------- 47
+ R KL AG+ ++S I S ++S+ + A ++LQ
Sbjct: 10 LPPEHRRKLQEAGFQTVSDIIEVSPIELSKELEISKEDALEILQLVKGTNITSSTALEKL 69
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+E++ L I T C +LD ILGGG+ ++TE G PGIGKTQ+GIQLAV+VQIP FGG+
Sbjct: 70 KEEKELPFIITFCEELDTILGGGVPLAKITEFCGAPGIGKTQIGIQLAVDVQIPSVFGGV 129
Query: 108 GGKAIYIGKCLGF----------------------------------------------- 120
G+AIYI F
Sbjct: 130 EGEAIYIDTEGSFMVHRAVDIAQATVSHCISSIENNPKLKEVLNDFTVNSILSKIYVYRC 189
Query: 121 --YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178
Y E A +N L +F++EH VK++++DSIAFHFR+ F D+ALRTR+L+G+A L+ +A
Sbjct: 190 NDYIELIATVNLLPQFLTEHPRVKLIVLDSIAFHFRNNFDDMALRTRLLNGLAQNLIRMA 249
Query: 179 KKFSLALLEPNLATT 193
+ LA++ N TT
Sbjct: 250 SQHKLAVVLTNQMTT 264
>gi|149635547|ref|XP_001509367.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Ornithorhynchus
anatinus]
Length = 364
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 129/277 (46%), Gaps = 86/277 (31%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
EV P++ R KL++AG+ + + S SD+++ + A + LQ
Sbjct: 4 EVGSFPVAPAVRAKLVAAGFQTAEELLHVSPSDLNKEIGISKEDALETLQIIRRECVSHM 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TEI G PG+GKT
Sbjct: 64 PKSSCASESGNKYTALELLEQEHTQGFIITFCSALDNILGGGIPLTKTTEICGGPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIG--------------------------------- 115
QL IQLAV+VQIP FGG+ G+A++I
Sbjct: 124 QLCIQLAVDVQIPECFGGVAGEAVFIDTEGSFLVDRVEAIATACIQHLQLVAESHLEEEQ 183
Query: 116 -------------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
+C + TE A I L F+SEH V++V++D IAF FRH
Sbjct: 184 QKALENFSLESILAHIYYFRCHDY-TELLAQIYLLSDFLSEHSKVRLVVVDGIAFPFRHD 242
Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F DL+LRTR+L+G+A +L++LA LA++ N TT
Sbjct: 243 FDDLSLRTRLLNGLAQQLISLANDHKLAVILTNQMTT 279
>gi|405959794|gb|EKC25786.1| Leucine-zipper-like transcriptional regulator 1 [Crassostrea gigas]
Length = 1621
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 52/221 (23%)
Query: 24 LSSICSAS-----SSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTE 78
L +CS S ++ + +A + L+EEQ SL I T LDN+LGGG+ ++TE
Sbjct: 756 LKLVCSESVDGSKRNEAPKPAVSALERLKEEQ-SLPPIITFSEGLDNMLGGGVPLCKITE 814
Query: 79 IGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI------------------------ 114
G PG+GKTQ+ +Q+AV+VQIP +FGGL G+A+YI
Sbjct: 815 FCGAPGVGKTQMCMQIAVDVQIPSQFGGLQGEAVYIDTEGSFIVERLVDIAKATVDHCNE 874
Query: 115 -GKCLGF---------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152
+ GF Y E A ++ L +F+ +H +KVV++DS+AFH
Sbjct: 875 MARLEGFKEGEITVESVLSGVHFYRCHDYVELLATVHLLPEFIKKHPKIKVVLVDSVAFH 934
Query: 153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
FRH F DL+LRTR+L+ +A + LA +F +A++ N TT
Sbjct: 935 FRHDFDDLSLRTRLLTTMAQSFIKLATEFKIAIVLTNQMTT 975
>gi|187954697|gb|AAI41035.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
Length = 366
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S RGKL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVGFPLSPAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGTSVANEKCTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CL-------GFYTEQS- 125
QL +QLAV+VQIP FGG+ G+A++I C+ G +TE+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEH 183
Query: 126 ----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
A + L F+S+H V++VIID IAF FRH
Sbjct: 184 QKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 EDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|432113632|gb|ELK35914.1| DNA repair protein RAD51 like protein 3 [Myotis davidii]
Length = 368
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 128/271 (47%), Gaps = 85/271 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R K++SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKMVSAGFQTAEELLEVKPSELSKEVGISKEEALEALQIIRRECLTDKPRHA 67
Query: 38 ---GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
T TA D+L++E + I T C+ LDNILGGG+ + TEI G PG+GKTQL +QL
Sbjct: 68 ESGKTCTALDLLEQEH-TQNFIITFCSALDNILGGGVPLTKTTEICGAPGVGKTQLCMQL 126
Query: 95 AVNVQIPVEFGGLGGKAIYIG--------------------------------------- 115
AV+VQIP FGG+ G+A++I
Sbjct: 127 AVDVQIPECFGGVEGEAVFIDTEGSFMVDRVIDLATACIQHLQLIAGTSMEEAHPKALEN 186
Query: 116 -------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162
+C + TE A + L +F+SEH V++VI+D IAF FRH F DL+L
Sbjct: 187 FTLENILSHIYYFRCHDY-TELLAQVYLLSEFLSEHSKVRLVIVDGIAFPFRHDFDDLSL 245
Query: 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 RTRLLNGLAQQMISLANNHRLAVILTNQMTT 276
>gi|345805658|ref|XP_537695.3| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 1 [Canis
lupus familiaris]
Length = 337
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 128/272 (47%), Gaps = 84/272 (30%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + ++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPCELSKEVGISKEEALETLQIIRRECLTNKPRYA 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + + I T C+ LDNILGGGI + TEI GVPG+GKTQL +
Sbjct: 68 ATAESGKKCTALELLEQEHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYI--------------------------GKCLGF------ 120
QLAV+VQIP FGG+ G+A++I G+ +G
Sbjct: 128 QLAVDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGRHMGEEHSKAL 187
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTE A + L F+SEH V++VI+D IAF FRH DL+
Sbjct: 188 EDFTLENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLS 247
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G+A ++++LA LA+L N TT
Sbjct: 248 LRTRLLNGLAQQMISLANNHRLAVLLTNQMTT 279
>gi|16716605|ref|NP_444499.1| DNA repair protein RAD51 homolog 3 [Mus musculus]
gi|81902682|sp|Q924H5.1|RA51C_MOUSE RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|14276845|gb|AAK58420.1|AF324883_1 RAD51L2/RAD51C protein [Mus musculus]
gi|60422796|gb|AAH90648.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
gi|148683867|gb|EDL15814.1| Rad51 homolog c (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 366
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S RGKL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVGYPLSPAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGTSVANEKCTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CL-------GFYTEQS- 125
QL +QLAV+VQIP FGG+ G+A++I C+ G +TE+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEH 183
Query: 126 ----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
A + L F+S+H V++VIID IAF FRH
Sbjct: 184 QKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 EDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|426238577|ref|XP_004013227.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Ovis aries]
Length = 371
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 125/272 (45%), Gaps = 84/272 (30%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
LP+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 LPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKTSYS 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGGI + TEI G PG+GKTQL +
Sbjct: 68 VTAESGRKCTALELLEQEHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------------- 120
QLAV+VQIP FGG+ G+A++I F
Sbjct: 128 QLAVDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTQMGEEHPKAL 187
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTE A + L F+SEH V++VI+D IAF FRH DL+
Sbjct: 188 QDFTLENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIAFPFRHDLDDLS 247
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 248 LRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|346644687|ref|NP_001231005.1| DNA repair protein RAD51 homolog 3 [Cricetulus griseus]
gi|81901537|sp|Q8R2J9.1|RA51C_CRIGR RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|19702129|emb|CAC88355.1| RAD51-like protein 2 [Cricetulus griseus]
Length = 366
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S T R KL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVSFPLSPTVRVKLVAAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGASVAGKKYTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYI---------------GKCL--------------- 118
QL +QLAV+VQIP FGG+ G+A++I C+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEH 183
Query: 119 -----GF----------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
GF YTE A + L F+S H V++VIID IA FRH
Sbjct: 184 QKALEGFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|213972612|ref|NP_001123249.1| Rad51 homolog c [Rattus norvegicus]
gi|149053773|gb|EDM05590.1| similar to RAD51L2/RAD51C protein (predicted) [Rattus norvegicus]
Length = 366
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S R KL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVGFPLSPAVRVKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGTSVANKKCTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CL-------GFYTEQS- 125
QL +QLAV+VQIP FGG+ G+A++I C+ G +TE+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQ 183
Query: 126 ----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
A + L F+S+H V++VIID IAF FRH
Sbjct: 184 QKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL LRTR+L+G+A +L++LA K LA++ N TT
Sbjct: 244 DDLFLRTRLLNGLAQQLISLANKHRLAVILTNQMTT 279
>gi|403274804|ref|XP_003929151.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Saimiri boliviensis
boliviensis]
Length = 337
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 125/273 (45%), Gaps = 86/273 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRAKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQILRRECLTNKPRYA 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGG+ + TEI G PGIGKTQL +
Sbjct: 68 GTSESGKKCTALELLEQEHTQGSIITFCSALDNILGGGVPLMKTTEICGAPGIGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIG------------------------------------- 115
QLAV+VQIP FGG+ G+A++I
Sbjct: 128 QLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEKHKGEEHRKAL 187
Query: 116 ---------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160
+C + TE A + L F+SEH V++VI+D IAF FRH DL
Sbjct: 188 EDFTLENILSHIYYFRCRDY-TELLAQVYLLPTFLSEHSKVRLVIVDGIAFPFRHDLDDL 246
Query: 161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 247 SLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|449480344|ref|XP_002196350.2| PREDICTED: DNA repair protein RAD51 homolog 3 [Taeniopygia guttata]
Length = 521
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 108/204 (52%), Gaps = 52/204 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L+EEQ S I T C+ LDNILGGG+ ++TEI G PG+GKTQL +QLAV+VQI
Sbjct: 230 TALELLEEEQ-SQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQI 288
Query: 101 PVEFGGLGGKAIYIGKCLGF---------------------------------------- 120
P FGG+ G+A++I F
Sbjct: 289 PECFGGIAGEAVFIDTEGSFMVDRVVDIAAACVQHCHLIAEAQQEEDHQKALETFSLENI 348
Query: 121 -----------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
YTE A + L +F+SEH V++V+ID IAF FRH F DL+LRTR+L+G
Sbjct: 349 LSHIYYFRCRDYTELLAQVYLLPEFLSEHSKVRLVVIDGIAFPFRHDFEDLSLRTRLLNG 408
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A +L+ +A A++ N TT
Sbjct: 409 LAQQLIIIANDHRAAVVLTNQMTT 432
>gi|395845975|ref|XP_003795692.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Otolemur garnettii]
Length = 347
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 123/252 (48%), Gaps = 64/252 (25%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEDLLELKPSELSKEVGISKEEALETLQIIRRECLTNKPRYA 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGG+ + TEI G PG+GKTQL I
Sbjct: 68 GTSESGKKCTALELLEQEHTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCI 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEH--------- 138
QLAV+VQIP FGG+ G+AI+I F ++ +A I +L H
Sbjct: 128 QLAVDVQIPECFGGVAGEAIFIDTEGSFMIDRVVDIATACIQHLQLIAETHIGEGSLGAK 187
Query: 139 -----------------KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKF 181
DV++VI+D IAF FRH DL+LRTR+L+G+A ++++LA +
Sbjct: 188 PICVFQCYDFTSSNSSLPDVRLVIVDGIAFPFRHDIDDLSLRTRLLNGLAQQMISLANSY 247
Query: 182 SLALLEPNLATT 193
LA++ N TT
Sbjct: 248 KLAVILTNQMTT 259
>gi|410980625|ref|XP_003996677.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Felis catus]
Length = 337
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 127/273 (46%), Gaps = 86/273 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEMKPSELSKEVGISKEEALETLQIIRRECLTNKPRYA 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + + I T C+ LDNILGGGI + TEI GVPG+GKTQL +
Sbjct: 68 AVAESGKKCTALELLEQEHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIG------------------------------------- 115
QLAV+VQIP FGG+ G+A++I
Sbjct: 128 QLAVDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEAHMGEEHPKAL 187
Query: 116 ---------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160
+C + TE A + L F+SEH V++VI+D IAF FRH DL
Sbjct: 188 EDFTLENILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDL 246
Query: 161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+LR+R+L+G+A ++++LA LA+L N TT
Sbjct: 247 SLRSRLLNGLAQQMISLANNHRLAVLLTNQMTT 279
>gi|291405699|ref|XP_002719136.1| PREDICTED: RAD51 homolog C [Oryctolagus cuniculus]
Length = 473
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 83/275 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
+++ P+S R KL++AG+ + + S++S+ + A + LQ
Sbjct: 4 DLASFPLSPAVRVKLVTAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECPTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + + I T C+ +DNILGGGI + TEI G PG+GKT
Sbjct: 64 PRYAGTSESGKKCTALELLEQEHTQSFIITFCSAVDNILGGGIPLMKTTEICGAPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------------------- 120
QL +QLAV+VQIP FGG+ G+A++I F
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVELATACIQHLHLIAGTHMEEEQ 183
Query: 121 ----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV 158
YTE A + L F+SEH V++VI+D IAF FRH
Sbjct: 184 KALEEFTLENILSHIYYFRCCDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD 243
Query: 159 DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 278
>gi|348567412|ref|XP_003469493.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cavia
porcellus]
Length = 367
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 126/275 (45%), Gaps = 89/275 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRG--------------------------- 38
P+ R KL+SAG+ S + A S++S+
Sbjct: 8 FPLCPAVRVKLVSAGFQSAEELLEAKPSELSKEVGISKEEALETLQILRRECLTNKPRND 67
Query: 39 --------TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
T TA D+L++E + I T C+ LD+ILGGGI + TEI G PG+GKTQL
Sbjct: 68 STPDTSCRTYTALDLLEQEH-TQGFIVTFCSALDDILGGGIPLMKTTEICGAPGVGKTQL 126
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIG----------------------------------- 115
+QLAV VQIP FGG+ G+A++I
Sbjct: 127 CMQLAVTVQIPECFGGVAGEAVFIDTEGSFMVDRMVDLATACIQHLQLIAGIHMDQEHQK 186
Query: 116 -----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV 158
+C + TE A + L F+S+H +++VI+D IAF FRH F
Sbjct: 187 ALEDFTLENILSHIYYFRCHDY-TELLAQVYLLPDFLSDHSKIRLVIVDGIAFPFRHDFD 245
Query: 159 DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 DLSLRTRLLNGLAQQMISLANHHRLAVILTNQMTT 280
>gi|444720807|gb|ELW61576.1| DNA repair protein RAD51 like protein 3 [Tupaia chinensis]
Length = 367
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 125/273 (45%), Gaps = 86/273 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTSKPRYG 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGGI + TEI GVPG+GKTQL +
Sbjct: 68 GPSESGKKCTALELLEQEHTQGFIVTFCSALDNILGGGIPLMKTTEICGVPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIG------------------------------------- 115
QLAV+VQIP FGG+ G+AI+I
Sbjct: 128 QLAVDVQIPECFGGVAGEAIFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQKAL 187
Query: 116 ---------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160
+C + TE A + L F+ EH V++VI+D IAF FRH DL
Sbjct: 188 EDFTLENILSHIYYFRCHDY-TELLAQVYLLQDFLLEHSKVRLVIVDGIAFPFRHDLDDL 246
Query: 161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+LRTR+L+G+A ++++LA LA+L N TT
Sbjct: 247 SLRTRLLNGLAQQMISLANSHRLAVLLTNQMTT 279
>gi|320168182|gb|EFW45081.1| RAD51C protein [Capsaspora owczarzaki ATCC 30864]
Length = 423
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 126/289 (43%), Gaps = 101/289 (34%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+SATQR KL AG+ ++ + S D+SR
Sbjct: 11 FPLSATQRSKLAKAGFFNVQDVLEVSVIDLSRELGITTTESLEILTLVRGDGDAAKQSPL 70
Query: 38 ---------------------GTQTAWDMLQEEQESLARITTSCADLDNILGGG-IGCRE 75
T + L +++ S I T D+D +LGGG + +
Sbjct: 71 ASAASVSGVVSSTAALAASPVSTSASAAALLQQEASRGAIRTGSFDMDAMLGGGGVPVGK 130
Query: 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG-------------------- 115
+TE G PGIGKTQLGIQ+AVN +P GGL G+A+YI
Sbjct: 131 ITEFCGAPGIGKTQLGIQIAVNAHMPRAIGGLEGEAVYIDTEGSFIIERSEDIAEGGVRF 190
Query: 116 ------------KCLGF-------------------YTEQSAVINYLDKFVSEHKDVKVV 144
+ +G Y EQ A++N L +F++EH V+V+
Sbjct: 191 AAELVASQLPPQQAIGLGGMTAQQVLAGIHYFRVHDYIEQLALVNILPEFLAEHPAVRVI 250
Query: 145 IIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
I+DS+AFHFRH F D+ALRTR+L+G+A + +A S+A++ N TT
Sbjct: 251 IVDSVAFHFRHHFDDMALRTRLLNGMAQSFLKMAIDSSVAIVLVNQMTT 299
>gi|358417193|ref|XP_613584.5| PREDICTED: DNA repair protein RAD51 homolog 3 [Bos taurus]
gi|359076460|ref|XP_002695646.2| PREDICTED: DNA repair protein RAD51 homolog 3 [Bos taurus]
Length = 371
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 124/272 (45%), Gaps = 84/272 (30%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
LP+S R KL SAG+ + + S++S+ + A + LQ
Sbjct: 8 LPLSPAVRVKLASAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKTSYS 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGGI + TEI G PG+GKTQL +
Sbjct: 68 VTAESGRKCTALELLEQEHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------------- 120
QLA++VQIP FGG+ G+A++I F
Sbjct: 128 QLAIDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTHMEEEHPKAL 187
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTE A + L F+SEH V++VI+D IAF FRH DL+
Sbjct: 188 QDFTLENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIAFPFRHDLDDLS 247
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 248 LRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|344240520|gb|EGV96623.1| Protein phosphatase 1E [Cricetulus griseus]
Length = 880
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S T R KL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVSFPLSPTVRVKLVAAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGASVAGKKYTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYI---------------GKCL--------------- 118
QL +QLAV+VQIP FGG+ G+A++I C+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEH 183
Query: 119 -----GF----------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
GF YTE A + L F+S H V++VIID IA FRH
Sbjct: 184 QKALEGFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|440902018|gb|ELR52867.1| DNA repair protein RAD51-like protein 3, partial [Bos grunniens
mutus]
Length = 368
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 124/272 (45%), Gaps = 84/272 (30%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
LP+S R KL SAG+ + + S++S+ + A + LQ
Sbjct: 10 LPLSPAVRVKLASAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKTSYS 69
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + I T C+ LDNILGGGI + TEI G PG+GKTQL +
Sbjct: 70 VTAESGRKCTALELLEQEHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCM 129
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------------- 120
QLA++VQIP FGG+ G+A++I F
Sbjct: 130 QLAIDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTHMEEEHPKAL 189
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTE A + L F+SEH V++VI+D IAF FRH DL+
Sbjct: 190 QDFTLENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIAFPFRHDLDDLS 249
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 250 LRTRLLNGLAQQMISLANNHRLAVILTNQMTT 281
>gi|338710970|ref|XP_001500693.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Equus caballus]
Length = 337
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 128/276 (46%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
++ P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 4 DLGSFPLSPGVRVKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIVRRECLTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGG+ + TEI G PG+GKT
Sbjct: 64 PRCVGTAESGKKCTALELLEQEHTQNFIITFCSALDNILGGGVPLTKTTEICGAPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYI--------------------------GKCLGF-- 120
QL +QLAV+VQIP FGG+ G+A++I G LG
Sbjct: 124 QLCMQLAVDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDIANACIQHLQLIAGTHLGEEY 183
Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
YTE A + L F+SEH V++VI+D IAF FRH
Sbjct: 184 SKALEDFTLENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|350590544|ref|XP_003131708.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Sus scrofa]
Length = 315
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 86/273 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIVRRECITNKTRYS 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + + I T C+ LDNILGGG+ ++TEI G PG+GKTQL +
Sbjct: 68 GTAESGKKYTALELLEQEHTQSFIITFCSALDNILGGGVPLTKITEICGAPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYIG------------------------------------- 115
QLAV+VQIP FGG+ G+A++I
Sbjct: 128 QLAVDVQIPECFGGVEGEAVFIDTEGSFMVNRVVDLATACIQHLHLIAGTHMEEEQPKAL 187
Query: 116 ---------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160
+C + TE A + L F+SEH V++VI+D IAF FRH DL
Sbjct: 188 QDFTLENILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHELDDL 246
Query: 161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 247 SLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|326426794|gb|EGD72364.1| hypothetical protein PTSG_00384 [Salpingoeca sp. ATCC 50818]
Length = 364
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 125/266 (46%), Gaps = 75/266 (28%)
Query: 3 VSKLPISAT-----QRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE----- 48
+S+ P+SA Q KL GY ++ + + +++S+ G + A +L++
Sbjct: 1 MSRKPVSACRLTAGQTHKLARCGYETVGDLEYVTVAELSKELEIGEEEAAQILRQIKDDS 60
Query: 49 --------------EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+E L ++T D D +LGGGI R++TE G PG GKTQL +QL
Sbjct: 61 SSGVESSTVFSGLRREEQLHSLSTLTRDFDELLGGGIEPRKLTEFCGAPGAGKTQLAMQL 120
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGF---------------------------------- 120
+VN Q+P FGGL G+ +YI F
Sbjct: 121 SVNCQLPHAFGGLAGQVVYIDTEGSFMADRFKEIAEHTRSELQPRASRRRKKQAALPSVE 180
Query: 121 -------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167
Y EQ AV+N L F +H VK+V+IDSIAFHFR F D+ LRTR+L
Sbjct: 181 EMLEGVHVFRVHNYIEQIAVLNALPAFQIDHPQVKLVVIDSIAFHFRADFHDMGLRTRLL 240
Query: 168 SGIALKLMNLAKKFSLALLEPNLATT 193
+G A +L++LA + ++ +L N TT
Sbjct: 241 NGAAQQLLSLATQHNIVVLITNQMTT 266
>gi|334322399|ref|XP_003340234.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Monodelphis
domestica]
Length = 422
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 126/272 (46%), Gaps = 86/272 (31%)
Query: 7 PISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------------- 47
P+S R KL+SAG+ + + S++SR + A + LQ
Sbjct: 9 PLSPGVRVKLVSAGFQTAEELLELKPSELSREVGISKEEALETLQIIKRECPVDLSRFAS 68
Query: 48 --------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQ 93
E++ + I T C+ LDNI+GGGI + TEI G PG+GKTQL +Q
Sbjct: 69 VSISGKKYTALELLEQEHTQGFIITFCSALDNIMGGGIPLTKTTEICGAPGVGKTQLCMQ 128
Query: 94 LAVNVQIPVEFGGLGGKAIYIG-------------------------------------- 115
LAV+VQIP FGG+ G+AI++
Sbjct: 129 LAVDVQIPECFGGVAGEAIFLDTEGSFMVDRVADLATACVQHLHLIAGSHLEEEHQKALE 188
Query: 116 --------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
+C + TE A ++ L F+ EH V+++I+D IAF FRH F DL+
Sbjct: 189 NFSLESILSHIYYFRCHNY-TELLAQVHLLPDFLLEHSKVQLIIVDGIAFPFRHDFDDLS 247
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTR+L+G+A +L+++A LA++ N TT
Sbjct: 248 LRTRLLNGLAQQLISMANNHKLAVIWTNQMTT 279
>gi|344285345|ref|XP_003414422.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Loxodonta
africana]
Length = 445
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 128/276 (46%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
++ P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 77 DLGSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEIRISKEEALETLQIIRRDCLTNI 136
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TEI G PG+GKT
Sbjct: 137 PRYAGTSESGKKCTALELLEQEHTQGFIITFCSALDNILGGGIPLTKTTEICGAPGVGKT 196
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CLG-------------- 119
QL +QLAV+VQIP FGG+ G+A++I C+
Sbjct: 197 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMIDRVVDLATACIQHLHLITGTHMEEEH 256
Query: 120 ----------------FY------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
+Y TE A + L F+SEH V++VI+D IAF FRH
Sbjct: 257 QKALEDFTLENILSHIYYFRCRDCTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL 316
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 317 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 352
>gi|26345474|dbj|BAC36388.1| unnamed protein product [Mus musculus]
Length = 384
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 52/204 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L++E + I T C+ LDNILGGGI + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct: 95 TALELLEQEH-TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 153
Query: 101 PVEFGGLGGKAIYIGK---------------CL-------GFYTEQS------------- 125
P FGG+ G+A++I C+ G +TE+
Sbjct: 154 PECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENI 213
Query: 126 ----------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
A + L F+S+H VK+VIID IAF FRH DL+LRTR+L+G
Sbjct: 214 LSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVKLVIIDGIAFPFRHDLEDLSLRTRLLNG 273
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A ++++LA LA++ N TT
Sbjct: 274 LAQQMISLANNHRLAVILTNQMTT 297
>gi|187469096|gb|AAI66862.1| Rad51c protein [Rattus norvegicus]
Length = 345
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 52/204 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L++E + I T C+ LDNILGGGI + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct: 56 TALELLEQEH-TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 114
Query: 101 PVEFGGLGGKAIYIGK---------------CL-------GFYTEQS------------- 125
P FGG+ G+A++I C+ G +TE+
Sbjct: 115 PECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQQKALKDFTLENI 174
Query: 126 ----------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
A + L F+S+H V++VIID IAF FRH DL LRTR+L+G
Sbjct: 175 LSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIAFPFRHDLDDLFLRTRLLNG 234
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A +L++LA K LA++ N TT
Sbjct: 235 LAQQLISLANKHRLAVILTNQMTT 258
>gi|119614837|gb|EAW94431.1| RAD51 homolog C (S. cerevisiae), isoform CRA_b [Homo sapiens]
Length = 305
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 17 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 76
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 77 GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 135
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 136 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 195
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 196 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 254
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 288
>gi|332848643|ref|XP_511913.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Pan troglodytes]
Length = 337
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESRKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIEHLQLIAEKHKGEEHQKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|397493033|ref|XP_003817418.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Pan paniscus]
Length = 337
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPVVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESRKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIEHLQLIAEKHKGEEHQKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|194382504|dbj|BAG64422.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|119614840|gb|EAW94434.1| RAD51 homolog C (S. cerevisiae), isoform CRA_e [Homo sapiens]
Length = 380
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 17 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 76
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 77 GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 135
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 136 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 195
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 196 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 254
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 288
>gi|17402896|ref|NP_478123.1| DNA repair protein RAD51 homolog 3 isoform 1 [Homo sapiens]
gi|3914534|sp|O43502.1|RA51C_HUMAN RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|2909801|gb|AAC39604.1| Rad51C [Homo sapiens]
gi|47777661|gb|AAT38108.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
gi|78070501|gb|AAI07754.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
gi|119614839|gb|EAW94433.1| RAD51 homolog C (S. cerevisiae), isoform CRA_d [Homo sapiens]
gi|261860596|dbj|BAI46820.1| RAD51 homolog C [synthetic construct]
Length = 376
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 17 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 76
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 77 GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 135
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 136 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 195
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 196 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 254
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 288
>gi|297272693|ref|XP_001104781.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Macaca mulatta]
Length = 337
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRESLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|395748906|ref|XP_003778851.1| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 2 [Pongo
abelii]
Length = 337
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|355568579|gb|EHH24860.1| hypothetical protein EGK_08587 [Macaca mulatta]
Length = 367
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRESLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|332246456|ref|XP_003272370.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Nomascus leucogenys]
Length = 337
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESDKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|402899803|ref|XP_003912876.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Papio anubis]
Length = 337
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 67
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 68 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 126
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVGRVVDLATACIQHLQLIAEKHKGEEHRKA 186
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 187 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 245
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>gi|148683866|gb|EDL15813.1| Rad51 homolog c (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 386
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 52/204 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L++E + I T C+ LDNILGGGI + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct: 97 TALELLEQEH-TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 155
Query: 101 PVEFGGLGGKAIYIGK---------------CL-------GFYTEQS------------- 125
P FGG+ G+A++I C+ G +TE+
Sbjct: 156 PECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENI 215
Query: 126 ----------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
A + L F+S+H V++VIID IAF FRH DL+LRTR+L+G
Sbjct: 216 LSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLEDLSLRTRLLNG 275
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A ++++LA LA++ N TT
Sbjct: 276 LAQQMISLANNHRLAVILTNQMTT 299
>gi|363741358|ref|XP_415870.3| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 3
[Gallus gallus]
Length = 366
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 86/277 (31%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSI-----------------------------CSASS 32
+V LP+S R +L++AG+ + + C+ +
Sbjct: 4 DVGSLPLSPALRARLLAAGFQTAQXLLETGPCGLSKEIGISREEALEALQVVRQECAGDA 63
Query: 33 SDISRGTQ-----TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
+ + G+ TA ++L+EEQ + I T C+ LDNILGGG+ ++TEI G PG+GK
Sbjct: 64 AKTAGGSGSTRKCTALELLEEEQ-TQGFIITFCSALDNILGGGVQLTKITEICGAPGVGK 122
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI------------------- 128
TQL +QLAV+VQIP FGG+ G+A++I F +++A I
Sbjct: 123 TQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRAADIATACVRHCQLIAEAHQEED 182
Query: 129 -----------------------NY---------LDKFVSEHKDVKVVIIDSIAFHFRHG 156
+Y L F+SEH V++V+ID IAF FRH
Sbjct: 183 HLQALETFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVIDGIAFPFRHD 242
Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F DL+LRTR+L+G+A +L+ +A A++ N TT
Sbjct: 243 FEDLSLRTRLLNGLAQQLIIIANDHKSAVVLTNQMTT 279
>gi|355754048|gb|EHH58013.1| hypothetical protein EGM_07774, partial [Macaca fascicularis]
Length = 374
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 15 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 74
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 75 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 133
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 134 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 193
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 194 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 252
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 253 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 286
>gi|414881530|tpg|DAA58661.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 308
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 84/152 (55%), Gaps = 50/152 (32%)
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQLA+NVQIPVE GGLGGKA+YI F
Sbjct: 85 IQLAINVQIPVECGGLGGKAVYIDTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQ 144
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ AVINY++KF+ EHKDV++VIIDS+ FHFR F DLA
Sbjct: 145 KQLQPERFLADIYYFRICSYTEQIAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLA 204
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
LRTRVLSG++LKLM +AK ++LA++ N TT
Sbjct: 205 LRTRVLSGLSLKLMKIAKTYNLAVVLLNQVTT 236
>gi|380796657|gb|AFE70204.1| DNA repair protein RAD51 homolog 3 isoform 1, partial [Macaca
mulatta]
Length = 374
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 15 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRESLTNKPRYA 74
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 75 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 133
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 134 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 193
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 194 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 252
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 253 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 286
>gi|297700682|ref|XP_002827366.1| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 1 [Pongo
abelii]
Length = 443
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 84 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 143
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 144 GTSESGKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 202
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 203 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 262
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 263 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 321
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 322 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 355
>gi|326931485|ref|XP_003211859.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Meleagris
gallopavo]
Length = 355
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 53/216 (24%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
+A SD +R TA ++L+EE + I T C+ LDNILGGG+ ++TEI G PG+GKT
Sbjct: 53 TAGGSDSTRKC-TALELLEEEH-AQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKT 110
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI-------------------- 128
QL +QLAV+VQIP FGG+ G+A++I F +++A I
Sbjct: 111 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRAADIATACVQHCQLIAEAHQEEDH 170
Query: 129 ----------------------NYLD---------KFVSEHKDVKVVIIDSIAFHFRHGF 157
+Y++ F+SEH V++V+ID IAF FRH F
Sbjct: 171 LKALETFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVIDGIAFPFRHDF 230
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A +L+ +A A++ N TT
Sbjct: 231 EDLSLRTRLLNGLAQQLIIIANDHKSAVVLTNQMTT 266
>gi|18376633|emb|CAD21699.1| Rad51C protein [Cricetulus griseus]
Length = 305
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 52/204 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L++E + I T C+ LDNILGGGI + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct: 33 TALELLEQEH-TQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 91
Query: 101 PVEFGGLGGKAIYI---------------GKCL--------------------GF----- 120
P FGG+ G+A++I C+ GF
Sbjct: 92 PECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENI 151
Query: 121 -----------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
YTE A + L F+S H V++VIID IA FRH DL+LRTR+L+G
Sbjct: 152 LSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDLDDLSLRTRLLNG 211
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A ++++LA LA++ N TT
Sbjct: 212 LAQQMISLANNHRLAVILTNQMTT 235
>gi|298715571|emb|CBJ28124.1| rad51 homolog C [Ectocarpus siliculosus]
Length = 344
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 52/190 (27%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I T C ++D ++GGG+ E+TE+ G PG+GKTQ G+QLAV+VQIP +FGG+GG A+YI
Sbjct: 39 IITFCREIDGMMGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYID 98
Query: 116 KCLGFYTEQ-----SAVINYLDK------------------------------------- 133
E+ SAV+ +L K
Sbjct: 99 TEGSLTVERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWRLHDHAE 158
Query: 134 ----------FVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183
F+ H +VK+V++DS+AFHFRH F D+++RTR+LS +A +L +A+ SL
Sbjct: 159 QLAAVRTLPEFLVAHPEVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQAHSL 218
Query: 184 ALLEPNLATT 193
A++ N TT
Sbjct: 219 AVVLVNQMTT 228
>gi|351698981|gb|EHB01900.1| DNA repair protein RAD51-like protein 3 [Heterocephalus glaber]
Length = 304
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 120/266 (45%), Gaps = 89/266 (33%)
Query: 6 LPISATQRGKLISAGYTSLSSICSA----------------------------------- 30
P+S R KL+SAG+ S + A
Sbjct: 8 FPLSPAVRVKLVSAGFQSAEELLEAKPSELSKEVGISKEEALETLQIVRRKCLTNKPRND 67
Query: 31 SSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
S+SD S TA D+L++E + I T C+ LDNILGGG+ + TEI G PG+GKTQL
Sbjct: 68 STSDTSCRKCTALDLLEQEH-TQGFIVTFCSALDNILGGGVPLMKTTEICGAPGVGKTQL 126
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIG----------------------------------- 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 127 CMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVERVVDLATACIQHLQLIAGTHMDEEHEK 186
Query: 116 -----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV 158
+C + TE A + L +S+H V++VI+D IAF FRH
Sbjct: 187 ALEDFTLENILSHIYYFRCHDY-TELLAQVYLLPDLLSDHSKVRLVIVDGIAFPFRHDLD 245
Query: 159 DLALRTRVLSGIALKLMNLAKKFSLA 184
DL+LRTR+L+G+A ++++LA LA
Sbjct: 246 DLSLRTRLLNGLAQQMISLANHHRLA 271
>gi|449269848|gb|EMC80589.1| DNA repair protein RAD51 like protein 3, partial [Columba livia]
Length = 327
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 52/209 (24%)
Query: 36 SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
S T TA ++L+EEQ + I T C+ LDN LGGG+ ++TEI G PG+GKTQL +QLA
Sbjct: 33 STRTCTALELLEEEQ-AQGFIITFCSALDNTLGGGVQLTKITEICGAPGVGKTQLCMQLA 91
Query: 96 VNVQIPVEFGGLGGKAIYIG----------------------------------KCLGFY 121
V+VQIP FGG+ G+A++I K L +
Sbjct: 92 VDVQIPECFGGVAGEAVFIDTEGSFMVDRVADIAAACVQHCQLIAQAQQEEDHLKALETF 151
Query: 122 TEQS-----------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRT 164
+ +S A + L F+SEH V++V++D IAF FRH F DL+LRT
Sbjct: 152 SLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVLDGIAFPFRHDFEDLSLRT 211
Query: 165 RVLSGIALKLMNLAKKFSLALLEPNLATT 193
R+L+G+A +L+ +A A++ N TT
Sbjct: 212 RLLNGLAQQLIIIANDHKSAVVLTNQMTT 240
>gi|16903198|gb|AAL27842.1| RAD51C protein [Chlamydomonas reinhardtii]
Length = 352
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 55/195 (28%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
RI + DLD +LGGG+ +VTE GVPG+GKTQLG+QLAVNVQIP G G+A+Y
Sbjct: 91 PRIISMARDLDALLGGGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQAVY 150
Query: 114 IG--------KCL----------------------------------------GFY---- 121
I +C G Y
Sbjct: 151 IDTEGSFMAERCADIAEGAVRHVQSILEKKASMGQPELLHDGERPFTLENVMRGIYLFRV 210
Query: 122 ---TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178
EQ ++N L +F+ ++ V++++IDS+ FHFR F D+A RTRV++G+A +L++LA
Sbjct: 211 HDHVEQLGLVNMLPRFLEQYSQVRLIVIDSVTFHFRQDFPDMAQRTRVVTGMAQQLISLA 270
Query: 179 KKFSLALLEPNLATT 193
+ ++A++ N TT
Sbjct: 271 QTHNVAVVLMNQVTT 285
>gi|145353002|ref|XP_001420821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581056|gb|ABO99114.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 56/211 (26%)
Query: 37 RGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
RG ++A ++L+EE+ + + T C LD+ LGGG E+TE+ G PGIGKTQ+ +QL+V
Sbjct: 78 RGARSAAELLREERARWS-VFTFCEALDDALGGGAASGEITELCGCPGIGKTQMAMQLSV 136
Query: 97 NVQIPVEFGGLGGKAIYI----------------------GKCL---------------- 118
+ Q P FGGLGG+A+Y+ G+C
Sbjct: 137 SAQTPRAFGGLGGEAVYVDTEGSFTAERAMDMAEALAEHLGRCAKRCEDEDARREMEAAL 196
Query: 119 ----------GFY-------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
G + TE A + L +F++E V++V+IDS+AFHFR F D+A
Sbjct: 197 ETCAPEAMLRGIHLFRCHEVTELLAALETLGEFIAERPKVRLVVIDSVAFHFRQDFQDMA 256
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LRT +LS + +LM++A +A++ N T
Sbjct: 257 LRTTILSKMTNRLMSIATTQQVAVVTVNQVT 287
>gi|431890845|gb|ELK01724.1| DNA repair protein RAD51 like protein 3 [Pteropus alecto]
Length = 308
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 121/263 (46%), Gaps = 84/263 (31%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPFSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKEEALETLQIIRRECLTNKPRHA 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + + I T C+ LDNILGGGI + TEI G PG+GKTQL +
Sbjct: 68 GTAESGKKCTALELLEQEHNQSFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYI--------------------------GKCLG------- 119
QLA++VQIP FGG+ G+A++I G +G
Sbjct: 128 QLAIDVQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMGEEHPKAL 187
Query: 120 ------------FY------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
+Y TE A + L F+SEH V++VI+D IA FRH DL+
Sbjct: 188 EDFTLENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIASPFRHDLDDLS 247
Query: 162 LRTRVLSGIALKLMNLAKKFSLA 184
LRTR+L+G+A ++++LA LA
Sbjct: 248 LRTRLLNGLAQQMISLANNHRLA 270
>gi|255070105|ref|XP_002507134.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
gi|226522409|gb|ACO68392.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
Length = 362
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 126/271 (46%), Gaps = 81/271 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSS-DISR---------------------- 37
++++ +P++ + R KL +AG+ S+ + A D++R
Sbjct: 20 LQLTSVPLAPSIRSKLQNAGFVSVRDVKGARGPIDLARETGLTNAEASEVIKALRLGIEG 79
Query: 38 ----GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQ 93
G ++A ++L EE LA T S DLD++LGGG+ E+TE+ G PGIGKTQ +Q
Sbjct: 80 TALAGAKSASEILYEESRKLAVFTFS-KDLDDLLGGGVAVGEITELCGCPGIGKTQACMQ 138
Query: 94 LAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS---------------------------- 125
L V+VQ+P FGG G A+YI F E++
Sbjct: 139 LCVSVQMPGAFGGYEGSAVYIDTEGSFMAERAKEVAQATVSHLVSISQFLPKHLSESGAL 198
Query: 126 ------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
AV+ L +V H VK+V+IDS+AFHFR F D+A
Sbjct: 199 SQFTVNEILDRVHLFRCHEITELLAVVESLPMYVRAH-GVKLVVIDSMAFHFRQDFKDMA 257
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LRT +L+ + +L+NLAK LA++ N T
Sbjct: 258 LRTAILAKMTTQLLNLAKSEHLAVVSVNQIT 288
>gi|330805267|ref|XP_003290606.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
gi|325079245|gb|EGC32854.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
Length = 275
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 50/205 (24%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
D+L +E + I T C ++D IL GG+ +++TE GVPGIGKTQ+ QLA+N IP
Sbjct: 24 DLLIKENQ---HIITFCKEIDQILNGGVPLKKLTEFCGVPGIGKTQMAFQLAINTSIPKS 80
Query: 104 FGGLGGKAIYIGKCLGF------------------------------------------- 120
GG+ GK+IYI +
Sbjct: 81 LGGIEGKSIYIDTEGNYSCQRVREMAQHLYDHLEKINGPSEPLSITVDSILNNIYFYRVY 140
Query: 121 -YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAK 179
Y E ++++ + F+ ++KDV+++I+DSI F FR F D+ALRTR+L +A LM++A
Sbjct: 141 NYMEMISLVHQIPLFLEQNKDVRLIILDSITFPFRKDFTDMALRTRLLLSLAQNLMSIAT 200
Query: 180 KFSLALLEPNLATT---ANLAESCL 201
+F++A++ N TT N ES L
Sbjct: 201 RFNVAVVFMNQVTTKISPNKRESIL 225
>gi|449662721|ref|XP_002167331.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Hydra
magnipapillata]
Length = 253
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 51/217 (23%)
Query: 32 SSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
+I + ++A+D+L+EE E L I T A DN++GGGI ++TEI G PG GKTQ G
Sbjct: 5 EEEIDKNQKSAYDLLKEE-EFLTPIVTFSAAFDNMIGGGIPIGKITEICGAPGTGKTQFG 63
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI----------------------- 128
IQ+AV+ QIP FGG+GG+A+++ F TE++ I
Sbjct: 64 IQIAVSAQIPTLFGGIGGEALFVDTEGNFITERALEIAEAASKHIQDIAMEESELSNAAF 123
Query: 129 -----------------NY---------LDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162
NY L + H VKVVI+DSIAFHFRH F D+ L
Sbjct: 124 GFTKHCIMNGIHVARCLNYNDLMALSYILSDIILRHPKVKVVIVDSIAFHFRHEFEDMGL 183
Query: 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAES 199
RTR+L + M +A ++ +A++ N TT L ES
Sbjct: 184 RTRLLHTLVQSFMKVAYEYKIAIVLMNQMTT-KLTES 219
>gi|66809625|ref|XP_638535.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
gi|74897050|sp|Q54PJ7.1|RA51C_DICDI RecName: Full=DNA repair protein RAD51 homolog 3
gi|60467144|gb|EAL65180.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
Length = 381
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+A D+L + ++ I T C+++D +L GG +++TEI GVPGIGKT + QL VN I
Sbjct: 49 SALDLLIQGRDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSI 108
Query: 101 PVEFGGLGGKAIYIG---------------------KC---------------------- 117
P + GG+ GKAIYI +C
Sbjct: 109 PFDLGGVQGKAIYIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNS 168
Query: 118 -----LGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172
+ Y E ++I+ L F+ ++KDVK++++DSI + FR F D+ LRTR L +A
Sbjct: 169 IYYYRVYHYIEIISLIHQLPLFLEKNKDVKLIVVDSITYPFRCDFKDMGLRTRSLLSLAQ 228
Query: 173 KLMNLAKKFSLALLEPNLATT---ANLAESCL 201
LMN+A +++LA++ N TT N ES L
Sbjct: 229 NLMNIATRYNLAVVVMNQVTTKISPNQKESIL 260
>gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
7]
gi|20139589|sp|Q975Y1.1|RADA_SULTO RecName: Full=DNA repair and recombination protein RadA
gi|15621272|dbj|BAB65267.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
7]
Length = 324
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESL----------------- 53
KLI AGY+SL ++ AS D+S TA +++E +E+L
Sbjct: 27 KLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRIIKEAREALDIRFKTALEVKKERINT 86
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGGI R +TE+ G G GKTQL QL+VNVQ+P+E GGLGGKA+Y
Sbjct: 87 KKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVY 146
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I K +G +Y Q A+++ L + +S+ +K+
Sbjct: 147 IDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKL 206
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR F +LA+R + L+ +L+ LA+ + LA++ N
Sbjct: 207 VIVDSVTSHFRAEFPGRENLAVRQQKLNKHLHQLVRLAEMYDLAVIITN 255
>gi|308810088|ref|XP_003082353.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
gi|116060821|emb|CAL57299.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
Length = 570
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 56/211 (26%)
Query: 37 RGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
+G ++A ++L++E+ R T C LD++L GGIG E+TE G PG+GKTQ+ Q+ V
Sbjct: 83 KGARSAAEVLEDERRR-PRTVTCCEALDDVLDGGIGSGEITEFCGCPGVGKTQMCTQVCV 141
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDK------------------ 133
+ P FGG G+A+Y+ F ++ SA++ +L +
Sbjct: 142 SASTPEAFGGTDGEAVYVDTEGSFMADRAMDVASALVEHLRRMEACESDSERRTEMKAAL 201
Query: 134 --------------------------------FVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
F++EH V++V+IDS+AFHFR F D+A
Sbjct: 202 EGYTAEKILSGIHLFRCHEVTELLAVLETLGEFIAEHPRVRLVVIDSVAFHFRQDFQDMA 261
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LRT +LS + +LM++A +A++ N T
Sbjct: 262 LRTTILSKMTNRLMSIATSRDVAVVTVNQVT 292
>gi|374633151|ref|ZP_09705518.1| DNA repair and recombination protein RadA [Metallosphaera
yellowstonensis MK1]
gi|373524635|gb|EHP69512.1| DNA repair and recombination protein RadA [Metallosphaera
yellowstonensis MK1]
Length = 324
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQESL 53
KL AGY+SL +I AS D+S R + A D L ++E+ S+
Sbjct: 27 KLTEAGYSSLEAIAVASPQDLSTAAGIPLTTAQRIIKEARDALDIRFKTALEIEQERASV 86
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITTS LD +LGGGI R +TE+ G G GKTQ+ Q++VNVQ+P E GGL GKA+Y
Sbjct: 87 KKITTSSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQISVNVQLPPEKGGLAGKALY 146
Query: 114 IGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVKV 143
I F TE Q A++ L +++ +K+
Sbjct: 147 IDTEGTFRTERIRAMASALGLDPKEALSNIMSIRAINTDHQIAIVEELQDLIAKDDRIKL 206
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V++DS+ HFR G +LA R + L+ +L+ LA+ + LA++ N
Sbjct: 207 VVVDSVTSHFRAEYSGRENLAARQQKLNRHLHQLVRLAEIYDLAVVVTN 255
>gi|223946445|gb|ACN27306.1| unknown [Zea mays]
gi|414881527|tpg|DAA58658.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 195
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 121 YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK 180
YTEQ AVINY++KF+ EHKDV++VIIDS+ FHFR F DLALRTRVLSG++LKLM +AK
Sbjct: 51 YTEQIAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKT 110
Query: 181 FSLALLEPNLATT 193
++LA++ N TT
Sbjct: 111 YNLAVVLLNQVTT 123
>gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula
DSM 5348]
gi|226736609|sp|A4YCN4.1|RADA_METS5 RecName: Full=DNA repair and recombination protein RadA
gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula
DSM 5348]
Length = 324
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 54/230 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQES 52
KL AGY++L SI AS D+S R + A D L ++E+ S
Sbjct: 26 NKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIKEARDALDIRFKTALEIEQERAS 85
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT LD +LGGGI R +TE+ G G GKTQ+ Q++VNVQ+P E GGL GKA+
Sbjct: 86 VKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKAL 145
Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVK 142
YI F TE Q A++ L +++ +K
Sbjct: 146 YIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIK 205
Query: 143 VVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V++DSI HFR G +LA+R + L+ +L+ LA+ + LA++ N
Sbjct: 206 LVVVDSITSHFRAEYSGRENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTN 255
>gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
Ar-4]
gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
Ar-4]
Length = 324
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 54/230 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQES 52
KL +GY+SL SI AS D+S R + A D L ++E+ S
Sbjct: 26 NKLNESGYSSLESIAVASPQDLSTVAGIPLATAQRIIKEARDALDIRFKTALEIEQERAS 85
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT LD +LGGGI R +TE+ G G GKTQ+ Q++VNVQ+P E GGL GKA+
Sbjct: 86 VKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPSEKGGLSGKAL 145
Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVK 142
YI F TE Q A++ L +S+ +K
Sbjct: 146 YIDTEGTFRTERIKAMASALGLDPKEVLQNIMSIRAINTDHQIAIVEELQDIISKDNTIK 205
Query: 143 VVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V++DSI HFR G +LA+R + L+ +L+ LA+ + LA++ N
Sbjct: 206 LVVVDSITSHFRAEYSGRENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTN 255
>gi|332796456|ref|YP_004457956.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1]
gi|332694191|gb|AEE93658.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1]
Length = 305
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 54/230 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQES 52
KLI AGY+SL +I AS D+S R + A D L ++E+ +
Sbjct: 7 NKLIDAGYSSLEAIAVASPQDLSVAAGIPLTTAQRIIKEARDALDIRFKTALEVKKERMN 66
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITTS LD +LGGGI R +TE G G GKTQ+ Q++VNVQ+P E GGL GKA+
Sbjct: 67 VRKITTSSQALDGLLGGGIETRTMTEFFGEFGSGKTQICHQISVNVQLPPEKGGLSGKAV 126
Query: 113 YI--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVK 142
YI K G +Y Q A+ + L +F++++ VK
Sbjct: 127 YIDTEGTFRWERIEAMAKAAGLDPDTAMDNIYYMRAINSDHQIAIGDDLQEFIAKNPSVK 186
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+DS+ HFR + +LA R + L+ +L LA+ + LA++ N
Sbjct: 187 VVIVDSVTSHFRAEYTGRENLAARQQKLNKHLHQLTRLAEIYDLAVIITN 236
>gi|303272033|ref|XP_003055378.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
gi|226463352|gb|EEH60630.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
Length = 354
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 126/271 (46%), Gaps = 81/271 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSI---------------CSASSSDISR-------- 37
M+++ +P++ + R KL AG+ S+ + + +S++ +
Sbjct: 14 MQLTSVPLAPSVRSKLQRAGFVSVRDVKKTRGPVELALEAGLTNEEASEVMKVVRFGVDG 73
Query: 38 ----GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQ 93
G ++A ++L+EE L I T ++LD +LGGG+ E+TE+ G PGIGKTQ+ +Q
Sbjct: 74 TALAGAKSASELLREETGKLP-IYTFSSELDALLGGGVAAGEITELCGCPGIGKTQMCVQ 132
Query: 94 LAVNVQIPVEFGGLGGKAIYIGKCLGFY----------------------TEQSAVINYL 131
L +VQIP FGG G+A+Y+ F E + + + +
Sbjct: 133 LCASVQIPHAFGGYDGEAVYVDTEGSFMAERAEEIAEATARHLRSVSNASPEDAGMSDAI 192
Query: 132 DKFVSE------------------------------HKDVKVVIIDSIAFHFRHGFVDLA 161
F +E H+ V++V++DS+AFHFR F D+A
Sbjct: 193 ASFTAERMLERVHLFRCHEVTELLAVLEALPAYVKKHR-VRLVVVDSVAFHFRQDFRDMA 251
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LRT +L+ + +L LA + +LA++ N T
Sbjct: 252 LRTTILAKMTQRLQQLASENALAVVTVNQVT 282
>gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 58/244 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 LEPN 189
+ N
Sbjct: 248 VITN 251
>gi|334350818|sp|P0CW91.1|RADA_AERPX RecName: Full=DNA repair and recombination protein RadA
gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.14.25]
gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
L.S.2.15]
gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.G.57.14]
gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.N.15.51]
gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.27]
gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.4]
gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
L.D.8.5]
gi|385773822|ref|YP_005646389.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
HVE10/4]
gi|385776457|ref|YP_005649025.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
REY15A]
gi|259551812|sp|C3MZK6.1|RADA_SULIA RecName: Full=DNA repair and recombination protein RadA
gi|259551815|sp|C4KIT6.1|RADA_SULIK RecName: Full=DNA repair and recombination protein RadA
gi|259551818|sp|C3MRI1.1|RADA_SULIL RecName: Full=DNA repair and recombination protein RadA
gi|259551822|sp|C3MY77.1|RADA_SULIM RecName: Full=DNA repair and recombination protein RadA
gi|259551825|sp|C3NFU5.1|RADA_SULIN RecName: Full=DNA repair and recombination protein RadA
gi|259551829|sp|C3N7M8.1|RADA_SULIY RecName: Full=DNA repair and recombination protein RadA
gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
L.S.2.15]
gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.14.25]
gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.G.57.14]
gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.N.15.51]
gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.27]
gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.4]
gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
L.D.8.5]
gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
REY15A]
gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
HVE10/4]
Length = 324
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
P2]
gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
gi|384433707|ref|YP_005643065.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
gi|14286170|sp|Q55075.2|RADA_SULSO RecName: Full=DNA repair and recombination protein RadA
gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada
gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada
gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2]
gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
Length = 324
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 55/239 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252
>gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 121/239 (50%), Gaps = 55/239 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERXNVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252
>gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 58/244 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKTVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRVEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 LEPN 189
+ N
Sbjct: 248 VITN 251
>gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
gi|334350817|sp|P0CW92.1|RADA_AERPE RecName: Full=DNA repair and recombination protein RadA
gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
Length = 319
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+Y+ F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGG+ + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGVETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 56/243 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ---------------SAVINYLDKFVSEHK---- 139
Q+P + GGL GKA+YI F E+ I ++ S H+
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 140 ----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A++
Sbjct: 189 DKLFTMVKNVNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAVV 248
Query: 187 EPN 189
N
Sbjct: 249 ITN 251
>gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++++V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIRLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>gi|328871813|gb|EGG20183.1| putative DNA repair protein [Dictyostelium fasciculatum]
Length = 328
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 50/195 (25%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
I T C +LDN+LGGGI + +TE G PG+GKTQL QLAVN IP G+ GK I+I
Sbjct: 33 NIITFCRELDNMLGGGIPLQRITEFCGAPGVGKTQLAFQLAVNCCIPKILYGVEGKCIFI 92
Query: 115 GKCLGFYT--------------------------------------------------EQ 124
GFY EQ
Sbjct: 93 DTEGGFYVDRVKQMADSLIEHLQIMGQTGTDQEKDAANQITVDSILENIMYYKIHHYIEQ 152
Query: 125 SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA 184
A I++L + +++K++IIDSIA+ FR F D+ R R+LS + L+++A+++++A
Sbjct: 153 VAFIHHLPLVLENDRNIKLIIIDSIAYPFRRHFSDMGARKRILSSMTQNLLSIAEQYNVA 212
Query: 185 LLEPNLATTANLAES 199
++ N TT L +
Sbjct: 213 VVIMNQVTTKILPNN 227
>gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus]
Length = 324
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR + LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGREILAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>gi|389860554|ref|YP_006362793.1| DNA repair and recombination protein RadA [Thermogladius
cellulolyticus 1633]
gi|388525457|gb|AFK50655.1| DNA repair and recombination protein RadA [Thermogladius
cellulolyticus 1633]
Length = 322
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 57/230 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----------------------QTAWDMLQEEQES 52
KL SAGYT++ ++ A ++S T +TA D ++ E+ S
Sbjct: 26 KLESAGYTTVWALIVARPEEVSEKTGLPPTTVSRIIDSARKVLGLTFKTAKD-VKYERLS 84
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT +LDNILGGG+ + +TE G G GKTQ+ QL+VNVQ+P E GGL GKA+
Sbjct: 85 IKKITTGSRELDNILGGGVETKTITEFFGEYGTGKTQICHQLSVNVQLPPEKGGLSGKAV 144
Query: 113 YI--------------GKCLG----------FYT------EQSAVINYLDKFVSEHKDVK 142
Y+ + +G FY Q +++ L FV ++ +V+
Sbjct: 145 YVDTEGTFRWERIEAMARAVGLEPDKAMENIFYQRAYNSDHQISIVEELFSFVPKN-NVR 203
Query: 143 VVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V++DS+ HFR G LA R + L+ +LM LA+ ++LA++ N
Sbjct: 204 LVVLDSVTSHFRAEYPGREHLAERQQKLNAHLHQLMRLAEAYNLAVVVTN 253
>gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus
saccharovorans 345-15]
gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus
saccharovorans 345-15]
Length = 326
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 54/242 (22%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT----QTAWDM----------- 45
++++LP + T KL+ +GY ++ +I A+ +I++ T QTA +
Sbjct: 15 DITELPGVGPTTAEKLVESGYATIEAIAVATPQEIAQATGIPLQTAQKIVDSARQALEIH 74
Query: 46 ------LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
L++E+ S+ +ITT LD++LGGGI +++TE G G GKTQ+ QL+VNVQ
Sbjct: 75 FKTALELKKERMSVRKITTGSKALDDLLGGGIETKQITEFFGEFGTGKTQICHQLSVNVQ 134
Query: 100 IPVEFGGLGGKAIYI--------------GKCLGFYTEQSAVINYLDKFVSEHK------ 139
+P + GGL GKA+YI + LG ++ Y + ++ H
Sbjct: 135 LPEDKGGLNGKAVYIDTEGTFRWERIEQMARGLGLDPDKVMDNIYWIRAINSHHQMAIVD 194
Query: 140 ---------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187
++++V++DS+ HFR F +LA R ++L+ +LM LA+ + +A++
Sbjct: 195 QLFDMLDKDNIRLVVVDSLTSHFRAEFPGRENLAARQQLLNRHLHQLMRLAEVYDVAVVV 254
Query: 188 PN 189
N
Sbjct: 255 TN 256
>gi|432960262|ref|XP_004086436.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Oryzias
latipes]
Length = 292
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 49/201 (24%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++LQ E+E ITT + LD+ L GG+ +VTEI G PG+GKT L +QL+V++QI
Sbjct: 21 TALELLQREREC-GSITTFSSQLDHALKGGLPVGKVTEICGAPGVGKTHLCLQLSVDIQI 79
Query: 101 PVEFGGLGGKAIYIGKCLGF---------------------------------------- 120
P FGGL + I++ F
Sbjct: 80 PRSFGGLEAQVIFMDTEGSFVLQRVVDIAAAVVRHFSLLAVDGEQKDTMQTFNMESILSN 139
Query: 121 --------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172
Y E A + L F+ + V++++IDS+AF FR DL+ RTR+L G+A
Sbjct: 140 IFLVRCHDYVELQAELLLLPDFLRDKPRVRLLVIDSVAFPFRQHLDDLSQRTRLLQGLAQ 199
Query: 173 KLMNLAKKFSLALLEPNLATT 193
+++++A + ++A++ N TT
Sbjct: 200 QVISMATRHNIAVVITNQMTT 220
>gi|348540387|ref|XP_003457669.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Oreochromis
niloticus]
Length = 358
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 75/266 (28%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESLAR--- 55
VS LP+S R KL SAG+ S + +S+ T + A ++L+ +
Sbjct: 5 VSSLPLSQAVRLKLGSAGFQLTSDLQDFKPDKLSKETGLSEEEAVEVLKAVKGGGGGGSG 64
Query: 56 --------------------ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
I T + LD LGGGI ++TE+ GVPGIGKTQL +QLA
Sbjct: 65 DFSASLTALELLQKEEELRSIVTFSSQLDESLGGGIPVGKITEVCGVPGIGKTQLCLQLA 124
Query: 96 VNVQIPVEFGGLGGKAIYIGKCLGF----------------------------------- 120
V+VQ+P FGG+ G+ ++I F
Sbjct: 125 VDVQVPQCFGGVEGQVMFIDTEGSFLLQRVTDIAAAAVRHCSLLAEDDEQRAATETFTVE 184
Query: 121 -------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167
+ E A ++ L F+S+H +++++IDS+AF FR F +L+ RTR+L
Sbjct: 185 TVLSNIFLVRCHDHVELLAELHLLPDFLSQHPKIRLLVIDSVAFPFRLLFDELSQRTRLL 244
Query: 168 SGIALKLMNLAKKFSLALLEPNLATT 193
+G+ +L+ +A ++++++ N TT
Sbjct: 245 NGVGQQLITMAINYNISVVITNQMTT 270
>gi|410933223|ref|XP_003979991.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Takifugu
rubripes]
Length = 346
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 117/264 (44%), Gaps = 73/264 (27%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEEQES------ 52
VS L ++ + KL+SAG+ + + +S+ Q A ++LQ + +
Sbjct: 5 VSSLSLNPGVKVKLVSAGFQFTTDLLHVKPQQLSKEAALNQQEALEVLQAVRRADEGAAS 64
Query: 53 ---------------LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
L I T + LD LGGG VTE+ GVPG+GKTQL +QLAV+
Sbjct: 65 SSSTALELLQKEEEELRSIVTFSSQLDAALGGGAPVGRVTEVCGVPGVGKTQLCLQLAVD 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGF------------------------------------- 120
Q+P FGG+GG+ +YI F
Sbjct: 125 AQVPRCFGGVGGQVVYIDTEGSFLIQRVADLAAAAVNHCSLLVEDQEQRVAMETFTVESI 184
Query: 121 -----------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
Y E A ++ + F+S+H V++++IDS+A FR F +L RTR+LSG
Sbjct: 185 LSNMFVVRCHDYIELLAELHLMPGFLSDHPRVRLLVIDSVASPFRPLFDELLQRTRLLSG 244
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
A +L+++A +A++ N TT
Sbjct: 245 FAQQLLSMATSHDIAVVITNQMTT 268
>gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius DSM 639]
gi|449066729|ref|YP_007433811.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius N8]
gi|449069003|ref|YP_007436084.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius Ron12/I]
gi|76363310|sp|Q4JAT5.1|RADA_SULAC RecName: Full=DNA repair and recombination protein RadA
gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639]
gi|449035237|gb|AGE70663.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius N8]
gi|449037511|gb|AGE72936.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius Ron12/I]
Length = 321
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESL----------------- 53
KL+ AGY+SL ++ A+ D+S TA +++E +E+L
Sbjct: 24 KLVEAGYSSLEAVAVATPQDLSVAAGIPQTTAQRIIKEAREALDIRFKTALEVKKERMNT 83
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGGI R +TE G G GKTQL Q++++VQ+P E GGL GKA+Y
Sbjct: 84 KKITTGSQALDGLLGGGIETRTMTEFFGEFGSGKTQLCHQISISVQLPQEKGGLNGKAVY 143
Query: 114 IGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVKV 143
I F E Q A+++ L + +++ +K+
Sbjct: 144 IDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKL 203
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DSI HFR G +LA+R + L+ +L+ LA+ + +A++ N
Sbjct: 204 IIVDSITSHFRAEYPGRENLAVRQQKLNKHLHQLVRLAEMYDIAVIITN 252
>gi|429216262|ref|YP_007174252.1| DNA repair and recombination protein RadA [Caldisphaera lagunensis
DSM 15908]
gi|429132791|gb|AFZ69803.1| DNA repair and recombination protein RadA [Caldisphaera lagunensis
DSM 15908]
Length = 327
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 58/244 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + KLI +GYTS+ +I A+ +I++ T
Sbjct: 17 DITDLPGVGPNTAQKLIESGYTSIEAIAVATPQEIAQVTGIPLPSAQKIVSAARETLDIK 76
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA + L++E+ ++ +ITT LD++LGGGI R++TE G G GKTQ+ LAVNV
Sbjct: 77 FRTALE-LKKERLNIHKITTGSKSLDDLLGGGIETRDMTEFFGEYGTGKTQICHALAVNV 135
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL KA+YI F E Q A++
Sbjct: 136 QLPEDKGGLNAKAVYIDTEGTFRWERIEQIARGLNLDPDKVMENIYWIRAVNSHHQMAIV 195
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L +S+ +VK+VI+DS+ HFR F +LA+R ++L+ +L+ L++ + +A+
Sbjct: 196 DQLYDMLSK-DNVKLVIVDSLTSHFRAEFPGRENLAMRQQLLNKHLHQLIRLSEIYDIAV 254
Query: 186 LEPN 189
+ N
Sbjct: 255 VVTN 258
>gi|347523524|ref|YP_004781094.1| DNA repair and recombination protein RadA [Pyrolobus fumarii 1A]
gi|343460406|gb|AEM38842.1| DNA repair and recombination protein RadA [Pyrolobus fumarii 1A]
Length = 322
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 114/231 (49%), Gaps = 54/231 (23%)
Query: 9 SATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-------LQ 47
AT R KL AGYT+L +I +A+ +++ R + A ++ L+
Sbjct: 22 PATAR-KLEEAGYTTLEAIAAANPQELAAAANIPLSTAQRIVRAAREALNLTFKTALELK 80
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+E+ + +ITT +LD +LGGGI R +TE G G GKTQ+ QLAVNVQ+P E GGL
Sbjct: 81 KERLAAKKITTGSRNLDALLGGGIETRMITEFFGEYGSGKTQICHQLAVNVQLPPEQGGL 140
Query: 108 GGKAIYIGKCLGFYTEQ---------------SAVINYLDKFVSEH-------------- 138
G +A+YI F E+ I Y+ S+H
Sbjct: 141 GARAVYIDTEGTFRWERIENMAKRWGLDPDKVMENIYYVRAINSDHQMAIVEELFDLVPK 200
Query: 139 KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
+++K+VI+DSI HFR G LA R + L+ +LM LA+ + +A++
Sbjct: 201 QNIKLVIVDSITSHFRAEYPGRERLAERQQKLNRHLHQLMRLAELYDIAIV 251
>gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
DSM 11486]
gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
DSM 11486]
Length = 326
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE---------------------EQESL 53
KL +AGY+S ++ A +++ T LQ+ E+ ++
Sbjct: 29 KLEAAGYSSAWTVVVARVDELAEKTGIPPTALQKVIENARRALGITFKTAREVKLERLNI 88
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD++LGGGI + +TE G G GKTQ+ QL+VNVQ+P E GGL GKA+Y
Sbjct: 89 KKITTGSKSLDDLLGGGIETKTITEFYGEYGSGKTQICHQLSVNVQLPPERGGLSGKAVY 148
Query: 114 I--------------GKCLGFYTEQSA-VINYLDKFVSEHK--------------DVKVV 144
+ + LG +Q I Y+ + S+H+ DV++V
Sbjct: 149 VDTEGTFRWERIEAMARGLGLEPDQVMDNIFYMRAYNSDHQVSIIDDLFTFVPKNDVRLV 208
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++DS+ HFR F LA R + L+ +LM LA+ F++A++ N
Sbjct: 209 VVDSVTSHFRAEFPGREHLAERQQKLNAHLHQLMRLAEAFNIAVVVTN 256
>gi|340379463|ref|XP_003388246.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Amphimedon
queenslandica]
Length = 356
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 60/245 (24%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSC 60
ME+ K P S+T + +SL + SA + TA ++L EQ+ L I T
Sbjct: 11 MEMMKGPHSSTLSSPEVPG--SSLQVVGSAKNEGC-----TALELLSIEQD-LDHIVTFS 62
Query: 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF 120
A +D +LGGG+ ++TE G PGIGKTQL IQLA++ +P FGG GG ++YI F
Sbjct: 63 AGIDGMLGGGVPVGKITEFCGSPGIGKTQLSIQLAIDATLPEPFGGCGGHSVYIDTEGSF 122
Query: 121 YTEQ-----SAVINYL----------------DKFVSE-----------HKDVKV----- 143
++ +A + ++ D + E H +++
Sbjct: 123 VIDRVVQIATATVRHVHSVAKSSADPELLAVADGYTLEVVLGNIHYYRCHNHIQLIALSN 182
Query: 144 ---------------VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188
+++DSIA FR F D+ LR R+LSG+A + LA +FSLA++
Sbjct: 183 ILHQTISNINSKVCLIVVDSIASPFRSSFKDMGLRHRLLSGLAQTFLKLATQFSLAVVFT 242
Query: 189 NLATT 193
N TT
Sbjct: 243 NQMTT 247
>gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
gi|343485851|dbj|BAJ51505.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
Length = 320
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 53/241 (21%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDI-----------------SRGTQTAW 43
++ +LP +SA KL GY+++ SI +A+ S++ G + AW
Sbjct: 7 DIEELPGVSAKLAEKLRELGYSTVESIATATVSELVAAGVDEEHASRIISAAREGIEIAW 66
Query: 44 ---DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
L E + ++ RITT LD ++GGG+ + +TE G G GK+QL QLAVNVQ+
Sbjct: 67 VTAKELAEIKTNIGRITTGSTRLDLLIGGGVETQAITEFFGEFGSGKSQLCHQLAVNVQL 126
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YLDKFVSEH------- 138
PV GGL G A+YI F E+ +++ N Y + + S+H
Sbjct: 127 PVRRGGLDGSALYIDTENTFRPERVTSMANSLGLNADEVLERIIYAEAYTSDHQILLVEK 186
Query: 139 -------KDVKVVIIDSIAFHFRHGFVDLAL---RTRVLSGIALKLMNLAKKFSLALLEP 188
K+VK++I+DS+ HFR ++ L R + L+ KL+ L + F++A +
Sbjct: 187 ADKIIKEKNVKLIIVDSLTSHFRSEYLGRQLLPERQQKLNKHMHKLIRLCRAFNIAAVVT 246
Query: 189 N 189
N
Sbjct: 247 N 247
>gi|374850436|dbj|BAL53425.1| DNA repair protein RadA [uncultured crenarchaeote]
Length = 320
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 53/240 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDI-----------------SRGTQTAW- 43
+ +LP +SA KL GY+++ SI +A+ S++ G + AW
Sbjct: 8 IEELPGVSAKLAEKLRELGYSTVESIATATVSELVAAGVDEEHASRIISAAREGIEIAWV 67
Query: 44 --DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
L E + ++ RITT LD ++GGG+ + +TE G G GK+QL QLAVNVQ+P
Sbjct: 68 TAKELAEIKTNIGRITTGSTRLDLLIGGGVETQAITEFFGEFGSGKSQLCHQLAVNVQLP 127
Query: 102 VEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YLDKFVSEH-------- 138
V GGL G A+YI F E+ +++ N Y + + S+H
Sbjct: 128 VRRGGLDGSALYIDTENTFRPERVTSMANSLGLNADEVLERIIYAEAYTSDHQILLVEKA 187
Query: 139 ------KDVKVVIIDSIAFHFRHGFVDLAL---RTRVLSGIALKLMNLAKKFSLALLEPN 189
K+VK++I+DS+ HFR ++ L R + L+ KL+ L + F++A + N
Sbjct: 188 DKIIKEKNVKLIIVDSLTSHFRSEYLGRQLLPERQQKLNKHMHKLIRLCRAFNIAAVVTN 247
>gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans
Kin4-M]
gi|73913726|sp|Q74MX9.1|RADA_NANEQ RecName: Full=DNA repair and recombination protein RadA
gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M]
Length = 325
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 57/231 (24%)
Query: 15 KLISAGYTSLSSICSAS------SSDISRGT-----------------QTAWDMLQEEQE 51
KLISAGY SL I SAS ++DI T +TA ++L+E Q+
Sbjct: 26 KLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLLEFKTAEEVLEERQK 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ ARITT +LD++LGGGI +TE G G GKTQ+G QLAV+VQ+P E GGL GKA
Sbjct: 86 T-ARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKA 144
Query: 112 IYIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK---------------DV 141
+YI F E + A+ N ++ F ++H+ +
Sbjct: 145 VYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQMLAARKAEELIRKGEPI 204
Query: 142 KVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K++++DS+ FR + LA R L L+ +A+ +++A+ N
Sbjct: 205 KLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTN 255
>gi|219112089|ref|XP_002177796.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217410681|gb|EEC50610.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 363
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 59/214 (27%)
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
T+TA +L+E E I T C +D +LGGGI E+TEI G PG+GKTQ G+QLAV+
Sbjct: 70 TKTAAALLEENVEGQGCIITFCRHVDTLLGGGIAMGELTEIAGPPGVGKTQWGMQLAVDA 129
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE----------------------------------- 123
++P FGG+ G+ +Y+ F E
Sbjct: 130 RLPNTFGGVAGETVYVDTEGSFSPERCHDMATSLVQHIEAGRRRRQEKGQKLQPMPAWFA 189
Query: 124 ------------------QSAVINYLDKFVSEHKD----VKVVIIDSIAFHFRHGFV--D 159
Q++V+ L KF+ + ++ V++V++DS+AFH R D
Sbjct: 190 PDTILQGIHVYRVHDEAAQTSVLYSLPKFLQDRQEAGTPVRLVVVDSMAFHHRAAPPNSD 249
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTR L+ A L NLA + +A++ N TT
Sbjct: 250 FVGRTRSLTSQAAFLTNLAAQSGIAVVAINQMTT 283
>gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus
F1]
gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus
F1]
Length = 319
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 34/174 (19%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
E+ S+ +ITT +LD++LGGGI + +TE G G GKTQ+ QL+VNVQ+P E GGL
Sbjct: 78 ERLSVRKITTGSKNLDDLLGGGIETKTITEFFGEYGTGKTQICHQLSVNVQLPPERGGLS 137
Query: 109 GKAIYI--------------GKCLG----------FYT------EQSAVINYLDKFVSEH 138
G+A+YI + LG +Y Q A++ L FV EH
Sbjct: 138 GRAVYIDTEGTFRWERIEAMARGLGLDPDEVMENIYYQRAYNSDHQIAIVEELFSFVPEH 197
Query: 139 KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+VK+V+IDS+ HFR G +LA R + L+ +L+ LA+ +++A++ N
Sbjct: 198 -NVKLVVIDSVTSHFRAEYPGRENLAARQQKLNKHLHQLVRLAEAYNIAVVVTN 250
>gi|47213607|emb|CAG07273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 329
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 48/186 (25%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I T + LD LGGG +TE+ GVPG+GKTQL +QLAV+VQ+P FGGLG + +Y+
Sbjct: 83 IVTFSSQLDAALGGGAPVGRMTEVCGVPGVGKTQLCLQLAVDVQVPHCFGGLGAQVVYVD 142
Query: 116 KCLGF------------------------------------------------YTEQSAV 127
GF Y E A
Sbjct: 143 TEGGFRLQRLLDLAAAAVNHCSLLAEDQEQRVAMETFTVETILSNVFVVRCHDYLELLAE 202
Query: 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
++ + F+S H V+++++DS+A FR +L+ RTR+LSG+A +L+ +A +A++
Sbjct: 203 LHLMPGFLSAHPGVRLLVVDSVASPFRPLLDELSQRTRLLSGLAQQLVAMAASRDMAVVV 262
Query: 188 PNLATT 193
N TT
Sbjct: 263 TNQMTT 268
>gi|297527452|ref|YP_003669476.1| DNA repair and recombination protein RadA [Staphylothermus
hellenicus DSM 12710]
gi|297256368|gb|ADI32577.1| DNA repair and recombination protein RadA [Staphylothermus
hellenicus DSM 12710]
Length = 319
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 34/174 (19%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
E+ S+ +ITT +LD++LGGGI + +TE G G GKTQ+ QL+V+VQ+P E GGL
Sbjct: 78 ERLSVRKITTGSKNLDDLLGGGIETKTITEFYGEYGTGKTQICHQLSVSVQLPPERGGLA 137
Query: 109 GKAIYI--------------GKCLG----------FYT------EQSAVINYLDKFVSEH 138
GKA+Y+ + LG +Y Q A++ L FV EH
Sbjct: 138 GKAVYVDTEGTFRWERIEAMARGLGLDPDEAMENIYYQRAYNSDHQIAIVEELFSFVPEH 197
Query: 139 KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
D K+V+IDS+ HFR G +LA R + L+ +L+ LA+ +++A++ N
Sbjct: 198 -DAKLVVIDSVTSHFRAEYPGRENLATRQQKLNKHLHQLVRLAEAYNIAVVVTN 250
>gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
DSM 17230]
gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
DSM 17230]
Length = 316
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 55/241 (22%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQ 40
+ +L IS+T KL G T++ ++ +A++ ++S+ G +
Sbjct: 9 LEELGISSTILKKLQEMGITTVEALAAANAQELSQNLAIPLQTVQRLISQARNALGLGLK 68
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA + +++E+ SL +ITT +LD +LGGGI + +TE+ G G GKTQ+ QLAVNVQ+
Sbjct: 69 TALE-IKKERMSLPKITTGSKNLDTLLGGGIEVKTITELFGEFGSGKTQICHQLAVNVQL 127
Query: 101 PVEFGGLGGKAIYI--------------GKCLGFYTEQSAV-INYLDKFVSEHK------ 139
P E GGL +AIYI + +G +++ I Y+ S+H+
Sbjct: 128 PPEKGGLSKRAIYIDTEGTFRWERIEAMARAIGMNPDEAMENILYVRAVNSDHQMAIAEE 187
Query: 140 --------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188
++ +V++DSI HFR G +LA+R + L+ +LM++A+ F +A++
Sbjct: 188 LKEIIPKENIGLVVVDSITGHFRAEYPGRENLAVRQQKLNRHLHQLMSIAELFDVAVVVT 247
Query: 189 N 189
N
Sbjct: 248 N 248
>gi|13878702|sp|Q9Y8J4.1|RADA_DESAM RecName: Full=DNA repair and recombination protein RadA
gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus
Z-533]
Length = 328
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------QTAWDML----------QEEQESL 53
KL +AGY S SI A + +++ T + A ML ++E+ ++
Sbjct: 31 KLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIENARKMLGITFKTAREVKQERSNI 90
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGG+ + +TE G G GKTQ+ QL+VNVQ+ E GGL G+A+Y
Sbjct: 91 GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVY 150
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I + LG +Y Q A+++ L FV ++ DV++
Sbjct: 151 IDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVRL 209
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR G LA R + L+ +LM LA+ +++A++ N
Sbjct: 210 VILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTN 258
>gi|390939022|ref|YP_006402760.1| DNA repair and recombination protein RadA [Desulfurococcus
fermentans DSM 16532]
gi|390192129|gb|AFL67185.1| DNA repair and recombination protein RadA [Desulfurococcus
fermentans DSM 16532]
Length = 328
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------QTAWDML----------QEEQESL 53
KL +AGY S SI A + +++ T ++A ML ++E+ ++
Sbjct: 31 KLEAAGYLSAWSIVVARAEELAEKTGLPVLTVQKIIESARKMLGITFKTAREVKQERLNI 90
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGG+ + +TE G G GKTQ+ QL+VNVQ+ E GGL G+A+Y
Sbjct: 91 GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVY 150
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I + LG +Y Q A+++ L FV ++ DVK+
Sbjct: 151 IDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVKL 209
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V++DS+ HFR G LA R + L+ +LM LA+ +++A++ N
Sbjct: 210 VVLDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTN 258
>gi|157129016|ref|XP_001655247.1| RAD51C protein, putative [Aedes aegypti]
gi|108872406|gb|EAT36631.1| AAEL011307-PA [Aedes aegypti]
Length = 274
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 91/205 (44%), Gaps = 51/205 (24%)
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
T+T D+ +EE + L I T C DLD +G GI +TE+ G PG GKTQ+ +QL +N
Sbjct: 3 TKTCLDLWREESKQLG-IVTFCRDLDQAIGNGISVGMITELCGPPGSGKTQMCLQLCINT 61
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHK-------------- 139
QIPV+ GGLG KAIY GF+ + SA + + K V HK
Sbjct: 62 QIPVQLGGLGAKAIYFDTNFGFHPCRLQEIASACVTHCQKLVQIHKKELATVTRDFTVDS 121
Query: 140 -------------------------------DVKVVIIDSIAFHFRHGFVDLALRTRVLS 168
+K+V++DS++F R+ + R V
Sbjct: 122 LMNGVYYKHIQSCSELLEGIETLGSLLKSGDKIKLVVLDSVSFLIRNNIENSFERIEVDH 181
Query: 169 GIALKLMNLAKKFSLALLEPNLATT 193
I KL LA ++ A++ N TT
Sbjct: 182 VILTKLHVLAHQYKCAIVITNDVTT 206
>gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
DSM 2162]
gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
DSM 2162]
Length = 329
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----------------------QTAWDMLQEEQES 52
KL +AGY S SI A +++ T +TA ++ QE + +
Sbjct: 32 KLEAAGYVSAWSIVVARPEELAEKTGLPVLTVQKVIEAARKALGITFKTAREVKQE-RLN 90
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT LD +LGGG+ + +TE G G GKTQL QL+VNVQ+P+E GGL G+A+
Sbjct: 91 IRKITTGSRSLDELLGGGVETKTITEFYGEYGSGKTQLCHQLSVNVQLPLEKGGLEGRAV 150
Query: 113 YI--------------GKCLGFYTEQSA-VINYLDKFVSEHK--------------DVKV 143
YI + LG ++ I Y+ + S+H+ +VK+
Sbjct: 151 YIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQISIVDELFTFIPKNNVKL 210
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V++DS+ HFR G LA R + L+ +L+ LA+ +++A++ N
Sbjct: 211 VVVDSVTSHFRAEYPGRDHLAERQQKLNSHLHQLVRLAEAYNVAVVVTN 259
>gi|256084116|ref|XP_002578278.1| DNA repair protein rad51 homolog 3 r51h3 [Schistosoma mansoni]
Length = 999
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 64/220 (29%)
Query: 38 GTQTAWDMLQEEQ----------ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
G TAWD+L Q + I + C D++LGGG +TE+ G PG+GK
Sbjct: 681 GLCTAWDLLGASQTVDENSPVEGKRYNYIVSMCRSFDDLLGGGFPTGRLTELCGEPGVGK 740
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI-------------------GKCLGFYTEQS--- 125
TQ +Q VNVQIP F GL G+A+++ C Y E +
Sbjct: 741 TQFCLQACVNVQIPKWFSGLNGQALFLDTEGNFIPERVRQMASALADHCKRHYIESNPER 800
Query: 126 --------------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHF 153
AV +L++F +H ++++++DSIA F
Sbjct: 801 TDESFIKQYCPTVESLMSGIHYIRITDHLKLLAVCRHLEQFCDQHPLIRLIVVDSIALPF 860
Query: 154 RHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
R+ F D+ R R+L+ + L+ +A + A++ N TT
Sbjct: 861 RYDFDDIPQRNRLLASVTQMLLCVAGRQKAAVILTNQITT 900
>gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus
kamchatkensis 1221n]
gi|254764424|sp|B8D610.1|RADA_DESK1 RecName: Full=DNA repair and recombination protein RadA
gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus
kamchatkensis 1221n]
Length = 328
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------QTAWDML----------QEEQESL 53
KL +AGY S SI A + +++ T + A ML ++E+ ++
Sbjct: 31 KLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIENARKMLGITFKTAREVKQERLNI 90
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGG+ + +TE G G GKTQ+ QL+VNVQ+ E GGL G+A+Y
Sbjct: 91 GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVY 150
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I + LG +Y Q A+++ L FV ++ DV++
Sbjct: 151 IDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVRL 209
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR G LA R + L+ +LM LA+ +++A++ N
Sbjct: 210 VILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTN 258
>gi|296202369|ref|XP_002748430.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Callithrix
jacchus]
Length = 304
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 40/174 (22%)
Query: 5 KLPISATQRGKLISAGYTSLSSICSASSSDISR--------------------------- 37
+ P+S+ R KL+SAG+ + + S++S+
Sbjct: 84 RFPLSSAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKDEALETLQIIRRECLTNKPRY 143
Query: 38 -GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
GT TA ++L++E I T C+ LDNILGGG+ + TEI G PGIGKTQL
Sbjct: 144 AGTSESGKKCTALELLEQEHIQ-GSIITFCSALDNILGGGVPLMKTTEICGAPGIGKTQL 202
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHK 139
+QLAV+VQIP FGG+ G+A++I F ++ +A I +L +HK
Sbjct: 203 CVQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEKHK 256
>gi|198438041|ref|XP_002130341.1| PREDICTED: similar to Rad51 homolog c [Ciona intestinalis]
Length = 391
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 42/191 (21%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
++LQ+E ++I+T ++LD++LGGG+ +TEI G GKTQL QLA N I +
Sbjct: 7 EILQQELSKNSQISTFSSNLDSLLGGGVKVGSITEIAGESSTGKTQLCFQLATNAHIHTK 66
Query: 104 FGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDK------------------------- 133
+GG+GG+ +YI + F TE+ A++++ ++
Sbjct: 67 YGGVGGETVYIDTEMTFKTERIGQIAQAMVHHFERTKHATDMSADTVLSGIYLFRCIKMV 126
Query: 134 -----------FVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFS 182
FV H VK+VI+DSIA R D+ +R ++L+ +A L +A +
Sbjct: 127 QLLAVSYQLFEFVKSHPKVKLVIVDSIAQXXR-AEEDMKIRNKLLNNLAANLRKIASLLN 185
Query: 183 LALLEPNLATT 193
+A++ N TT
Sbjct: 186 VAVVLVNQVTT 196
>gi|359415641|ref|ZP_09208069.1| DNA repair and recombination protein RadA [Candidatus Haloredivivus
sp. G17]
gi|358034001|gb|EHK02478.1| DNA repair and recombination protein RadA [Candidatus Haloredivivus
sp. G17]
Length = 316
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE-----------------EQESL 53
KL AGY L SI + SS D+ G + + ++ E +++ +
Sbjct: 22 KLRDAGYDDLMSIATMSSGDLGEVADLGDKKSQSIITEARKHLDVGFESGKERFEKRKEM 81
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
RITT+ ++D +LGGG+ + +TE G G KTQL QLAVNVQ E GGLG +AIY
Sbjct: 82 KRITTNSENVDEVLGGGVETQAITEFYGEYGSAKTQLSHQLAVNVQRDEEDGGLGREAIY 141
Query: 114 IGKCLGF---YTEQSAVINYLD------------KFVSEHK--------------DVKVV 144
I F EQ A N +D F S+H+ DV ++
Sbjct: 142 IDTEDTFTPTRVEQMAEANGMDVDETLENIHVARAFNSDHQMLLADQAQDICAENDVGLI 201
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
I+DS+ FR +V +LA R + L+ L+ LA +LA++ N
Sbjct: 202 IVDSLTAQFRSDYVGRGELAPRQQKLNKHMNTLLRLANSHNLAVVVTN 249
>gi|424813601|ref|ZP_18238789.1| DNA repair and recombination protein RadA [Candidatus Nanosalina
sp. J07AB43]
gi|339758547|gb|EGQ43802.1| DNA repair and recombination protein RadA [Candidatus Nanosalina
sp. J07AB43]
Length = 316
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE-----------------EQESL 53
KL +GY L SI + SS +++ G + A ++ E ++E +
Sbjct: 20 KLRDSGYEELMSIATMSSGELAEVADLGDKKAQGIITESRKELDIGFESGKERYDQREEM 79
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
RI T C + D ILGGG+ + +TE+ G G KTQ+ QLA NVQ+P + GGLG A+Y
Sbjct: 80 KRIMTGCEEFDEILGGGVETQAITEVYGEYGSAKTQISHQLATNVQLPRDEGGLGKGAVY 139
Query: 114 IGKCLGFYT---EQSAVINYLDK------------FVSEHK--------------DVKVV 144
+ F EQ A N D F S+H+ D+ +V
Sbjct: 140 VDTEDTFIPQRIEQMAEANGQDPEEVLDDIHVARAFNSDHQMLLADEAQEICQNNDIGLV 199
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++DS+ FR +V +LA R + L+ L+ LA ++A+L N
Sbjct: 200 VVDSLTAQFRSDYVGRGELAQRQQKLNKHMNTLLRLANAHNIAVLVTN 247
>gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus
DSM 5456]
gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM
5456]
Length = 323
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 61/244 (25%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP + KLI AGY ++ +I A+ ++S + + A D+
Sbjct: 9 ITDLPGVGPATANKLIEAGYATIEAIAVATPQELSAAAGIPLTAAQRIIKAAREALDIRF 68
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ +ITT +LD++LGGGI + +TE G G GKTQ+ QLAVNVQ+
Sbjct: 69 KTALEVKKERMQTRKITTGSRNLDDLLGGGIETKTITEFFGEFGSGKTQICHQLAVNVQL 128
Query: 101 PVEFGGLG-----GKAIYI--------------GKCLG----------FY------TEQS 125
P+E GGL KA+YI K G FY Q
Sbjct: 129 PIEKGGLSTQDRVAKAVYIDTEGTFRWERLENMAKRWGLDPDEVMSNIFYIRAINSDHQM 188
Query: 126 AVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFS 182
A+++ L V + +++K+VI+DS+ HFR G +LA R + L+ +L LA+ +
Sbjct: 189 AIVDELFNIVPK-ENIKLVIVDSVTSHFRAEYPGRENLAARQQKLNRHLHQLAKLAEVYD 247
Query: 183 LALL 186
LA++
Sbjct: 248 LAVV 251
>gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum
str. IM2]
gi|20139514|sp|Q8ZYR9.1|RADA_PYRAE RecName: Full=DNA repair and recombination protein RadA
gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum]
Length = 333
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTEI G G GKTQL QLAV VQ+P E GGL
Sbjct: 94 ERRKKIRRISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGL 153
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G ++Q+ I Y + S+H+
Sbjct: 154 GAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQ 213
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 214 HNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Pyrobaculum neutrophilum
V24Sta]
gi|226736610|sp|B1YC14.1|RADA_THENV RecName: Full=DNA repair and recombination protein RadA
gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Pyrobaculum neutrophilum
V24Sta]
Length = 330
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++++ RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 91 ERRKTIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGL 150
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G +Q+ I Y + S+H+
Sbjct: 151 GAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQ 210
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 211 NNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 264
>gi|355715062|gb|AES05213.1| RAD51-like protein C [Mustela putorius furo]
Length = 322
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 33/142 (23%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------------- 47
P+S R KL+SAG+ + + S++S+ + A + LQ
Sbjct: 8 FPLSPAVRVKLVSAGFQTAEELLEMKPSELSKEVGISKEEALETLQILRRECLTIKSRYT 67
Query: 48 ---------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
E++ + + I T C+ LDNILGGGI + TEI GVPG+GKTQL +
Sbjct: 68 ATAESGKNCTALELLEQEHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCM 127
Query: 93 QLAVNVQIPVEFGGLGGKAIYI 114
QLAV+VQIP FGG+ G+A++I
Sbjct: 128 QLAVDVQIPECFGGVEGEAVFI 149
>gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
gi|143811446|sp|Q9UWR5.2|RADA_PYRIL RecName: Full=DNA repair and recombination protein RadA
gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
Length = 330
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 91 ERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGL 150
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G +Q+ I Y + S+H+
Sbjct: 151 GAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQ 210
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++I+DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 211 HNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 264
>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
petrolearius DSM 11571]
gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
petrolearius DSM 11571]
Length = 323
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 64/253 (25%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE------- 48
+E+ LP + T KL AGY+++ I +AS +D++ G TA M++E
Sbjct: 4 LEIEDLPGVGPTTADKLREAGYSTIEGIATASYADLAEAAEIGESTAKKMIREARKMADI 63
Query: 49 -----------EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E++ + ++TT + D ++GGG+ + E G G GK+Q+ Q+AVN
Sbjct: 64 GGFRKGTDVLEERKKVRKLTTFVPEFDALMGGGLETMSIIEFYGEFGSGKSQIAHQMAVN 123
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVINYLD------------------KFVSEH 138
Q+P + GGL G IYI F E+ ++ LD F S+H
Sbjct: 124 AQLPEDVGGLNGSVIYIDTENTFRPERIRQMVEGLDLEDVPSPEEFLEHIHVAEAFTSDH 183
Query: 139 -------------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
K +K++++DS+ HFR + L+LR + L+ L
Sbjct: 184 QMLLLDNVRELAAELKETDKPLKLIVVDSLMAHFRAEYAGRGTLSLRQQKLNKHMYDLAK 243
Query: 177 LAKKFSLALLEPN 189
LAK+F+ ++ N
Sbjct: 244 LAKEFNAVVIVTN 256
>gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
KIN4/I]
gi|166218760|sp|A8AB83.1|RADA_IGNH4 RecName: Full=DNA repair and recombination protein RadA
gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
KIN4/I]
Length = 327
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 58/242 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSD-------------ISRGTQTAWDM--- 45
V++LP + + KLI AGY ++ ++ A+ + I R + D+
Sbjct: 14 VAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAIGIPLTTAQKIIRAARQMLDIRFR 73
Query: 46 ----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
++ E+ +L +ITT +LD++LGGGI + +TE G G GK+QL Q +VNVQ+P
Sbjct: 74 TAKEVKLERMNLRKITTGSKNLDDLLGGGIETKTITEFFGEFGSGKSQLCHQASVNVQLP 133
Query: 102 VEFGGLG-----GKAIYI--------------GKCLGFYTEQSA-VINYLDKFVSEHK-- 139
+E GGL KA+Y+ KCLG +Q I Y+ S+H+
Sbjct: 134 LEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMA 193
Query: 140 ------------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLA 184
+VK++++DS+ HFR G +LA+R + L+ +L LA+ ++ A
Sbjct: 194 IVEELFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLGKLAEVYNTA 253
Query: 185 LL 186
++
Sbjct: 254 VI 255
>gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3914551|sp|O27436.1|RADA_METTH RecName: Full=DNA repair and recombination protein RadA
gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 311
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + A KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA+D++ E ++ + RITT LD ++GGGI + +TE+ G G GK+QL +LAV
Sbjct: 62 DFETAFDVM-ERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL-------------- 131
VQ+P E GGL +A++I F E+ V+N +
Sbjct: 121 VQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILM 180
Query: 132 ----DKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLA 184
++ + E K++++VI+DS+ HFR +V LA R + L+ L N+A ++ A
Sbjct: 181 AEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter
marburgensis str. Marburg]
gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter
marburgensis str. Marburg]
Length = 311
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + A KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA+D++ E ++ + RITT LD ++GGGI + +TE+ G G GK+QL +LAV
Sbjct: 62 DFETAFDVM-ERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL-------------- 131
VQ+P E GGL +A++I F E+ V+N +
Sbjct: 121 VQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILM 180
Query: 132 ----DKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLA 184
++ + E K++++VI+DS+ HFR +V LA R + L+ L N+A ++ A
Sbjct: 181 AEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|379005517|ref|YP_005261189.1| DNA repair and recombination protein RadA [Pyrobaculum oguniense
TE7]
gi|375160970|gb|AFA40582.1| DNA repair and recombination protein RadA [Pyrobaculum oguniense
TE7]
Length = 333
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 94 ERRKKIRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGL 153
Query: 108 GGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK------------- 139
G KAIYI F E+ A+ N Y + S+H+
Sbjct: 154 GAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQ 213
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 214 HNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>gi|281211390|gb|EFA85555.1| putative DNA repair protein [Polysphondylium pallidum PN500]
Length = 398
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+T D+L E + I + C +LD LGGGI R++TE GVPG+GKTQ+ +QLAVN
Sbjct: 21 KTGLDLLNEHSQ---HIISFCMELDQKLGGGIPLRKMTEFCGVPGVGKTQMSLQLAVNCC 77
Query: 100 IPVEFGGLGGKAIYI 114
+PVEFGG+ GK IYI
Sbjct: 78 LPVEFGGVAGKTIYI 92
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 110 KAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
++IY + + Y EQ A++N L + DV++++IDSI FR F D+A RTRVL+
Sbjct: 155 ESIYYYR-VHHYLEQLALVNMLPSILQARSDVRLIVIDSITCPFRRHFQDIAQRTRVLTQ 213
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+A L+++A+++++A++ N +T
Sbjct: 214 LATNLLSIAQQYNVAVVLTNHVST 237
>gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
gi|166218765|sp|A4WN87.1|RADA_PYRAR RecName: Full=DNA repair and recombination protein RadA
gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
Length = 333
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 94 ERRKKIRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGL 153
Query: 108 GGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK------------- 139
G KAIYI F E+ A+ N Y + S+H+
Sbjct: 154 GAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQ 213
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 214 HNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>gi|310752305|gb|ADP09466.1| RadA [uncultured marine crenarchaeote E48-1C]
Length = 334
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 32/171 (18%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
D L + ++ + R+TT LD +LGGG+ + ++E G G GK+Q+ QL VNVQ+P E
Sbjct: 78 DELLKRRQDVLRLTTGSKVLDQLLGGGLETQTISEFYGQYGSGKSQICHQLCVNVQLPTE 137
Query: 104 FGGLGGKAIYI--------------GKCLGFYTEQSAV-INYLDKFVSEHK--------- 139
GGL G A+Y+ + LG EQ+A I Y + + S+H+
Sbjct: 138 QGGLDGAALYVDTENTFRTERIVQMSRHLGLEPEQTAKNIIYAEAYTSDHQMFLLDNADE 197
Query: 140 -----DVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFS 182
+VK++++DS+ HFR ++ LA R + L+ KL+ LA+ F+
Sbjct: 198 VVKENNVKLIVVDSLTSHFRSEYIGREMLAPRQQKLNKHMHKLIRLARAFN 248
>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 336
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSIC----------------------SASSSDISRGTQTAWDMLQEEQES 52
+L AG+TSL SI A+ S ++ +A+D Q+ +++
Sbjct: 42 RLAEAGFTSLESIAMSTPSELAVYAGISEAVAQKIIQAARSKLNIDVMSAYDFYQQ-RKA 100
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RITT LD +LGGG+ + +TEI G G GKTQ Q+AV VQ+ E GGLG A+
Sbjct: 101 VQRITTGSKALDELLGGGVETQSITEIYGPYGSGKTQFCHQMAVTVQLDEEKGGLGRGAM 160
Query: 113 YIGKCLGFYTEQSAVIN---------------YLDKFVSEH--------------KDVKV 143
YI F E+ I Y F S+H +D+ +
Sbjct: 161 YIDTEGTFRPERILQIAERFKLDPEHTLKNILYARAFTSDHQMIVTERAESYIKERDIGL 220
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DS+ HFR +V LA R + L+ KL+ LA +++A++ N
Sbjct: 221 IIVDSLISHFRGEYVGRETLAERQQKLNKYLHKLLRLALGYNMAVIVTN 269
>gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus
DSM 2088]
gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus
DSM 2088]
Length = 311
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA D++ E ++++ RITT LD+++GGGI + +TE+ G G GK+QL +LAV VQ
Sbjct: 64 ETALDVV-ERRKNVGRITTGSKALDDLIGGGIETQSITEVFGEFGSGKSQLAHELAVTVQ 122
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVIN 129
+P+E GGL +A++I F E Q +
Sbjct: 123 LPIEKGGLEAEAVFIDTENTFRPERIEQIAKHFKLDTKKVLKNIYVARAFNSSHQILMAE 182
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186
++ + E K++++VI+DS+ HFR +V LA R + L+ L NLA +++A+
Sbjct: 183 KVNDLIQEGKNIRLVIVDSLTSHFRAEYVGREALATRQQKLNQHLHTLQNLATTYNIAVF 242
Query: 187 EPN 189
N
Sbjct: 243 VTN 245
>gi|449510519|ref|XP_002200052.2| PREDICTED: DNA repair protein RAD51 homolog 3-like, partial
[Taeniopygia guttata]
Length = 374
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L+EEQ S I T C+ LDNILGGG+ ++TEI G PG+GKTQL +QLAV+VQI
Sbjct: 189 TALELLEEEQ-SQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQI 247
Query: 101 PVEFGGLGGKAIYI 114
P FGG+ G+A++I
Sbjct: 248 PECFGGVAGEAVFI 261
>gi|20094878|ref|NP_614725.1| DNA repair and recombination protein RadA [Methanopyrus kandleri
AV19]
gi|19888111|gb|AAM02655.1| RadA recombinase [Methanopyrus kandleri AV19]
Length = 317
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 16 LISAGYTSLSSICSASSSDIS------RGTQTAWDMLQEEQESLARITTSCADLDNILGG 69
I A LS + S D+ R ++ L++ + RITT + LD ILGG
Sbjct: 31 FIYADPKYLSEVTGMSERDVEDIQEELRNIDVEFETLEKLERKRRRITTGSSALDEILGG 90
Query: 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI--------GKCLG-- 119
G+ C E+TE G G GK+Q+ QL VNVQ+P E GGL KAI+I G+ G
Sbjct: 91 GVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSPGRIKGMA 150
Query: 120 --------------FYTEQSAVINYLDKFVSEHK-----DVKVVIIDSIAFHFRHGFV-- 158
F T+ +V + HK D+ +V+IDS+ HFR +
Sbjct: 151 EALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVVIDSLTAHFRAEYSKL 210
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALL 186
D++ R L +L NLA +A++
Sbjct: 211 GDVSERQARLMKHVDQLRNLAMDHDVAVV 239
>gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [Methanocella arvoryzae
MRE50]
gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [Methanocella arvoryzae MRE50]
Length = 323
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 63/226 (27%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTA------------------WDMLQEEQES 52
KL AGYTS+ +I AS S+++ G TA D + E +++
Sbjct: 20 KLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAAAKKCSNIGGFETGDTVFERRKA 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++ T+C LD++LGGG+ + +TE G G GKTQ+ QLAVNVQ+P E GGLGG +
Sbjct: 80 VGKLKTNCNSLDDLLGGGVETQSITEFYGEFGSGKTQVAHQLAVNVQLPPEQGGLGGSVV 139
Query: 113 YIGKCLGFYTEQSAVI-------------NYL-------------------------DKF 134
I F E+ A + ++L +K
Sbjct: 140 MIDTENTFRPERIAQMVKGLKGGEDLDPEDFLKNIHVARAYNSNHQILLVESASELAEKM 199
Query: 135 VSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNL 177
+ VK++I+DS+ HFR +V LA R + L+ LM
Sbjct: 200 RDSDRPVKLIIVDSLTAHFRSEYVGRGTLADRQQKLNKHMHDLMRF 245
>gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei
T469]
Length = 324
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GT 39
+ LP + T KL AGYT L + AS D++ G+
Sbjct: 16 LEDLPGVGPTTAEKLREAGYTDLIELAVASPKDLADTVGIGEGVAQKIILAARKYANVGS 75
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
D++ E ++ + ++TT +D D +LGGG+ + +TE G G GKTQ+ QLAVNVQ
Sbjct: 76 FETGDVIYERRKKVTKLTTGSSDFDTLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNVQ 135
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE---QSAVINYLDK------------FVSEHK----- 139
+P + GGL G A+YI F E Q A LD F S H+
Sbjct: 136 LPKDKGGLEGHAVYIDTENTFRPERIKQMAEALELDPVEVLKKIHVARAFNSNHQILLVD 195
Query: 140 ---------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
V+++I+DS+ HFR +V LA R ++L+ L+ A
Sbjct: 196 KAMELAKEYPVRLLIVDSLTAHFRAEYVGRGSLAERQQLLNKHMHDLLKFA 246
>gi|374327612|ref|YP_005085812.1| protein RadA [Pyrobaculum sp. 1860]
gi|356642881|gb|AET33560.1| RadA [Pyrobaculum sp. 1860]
Length = 333
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDIS-------RGTQ---TAWDML-----------QEEQESL 53
KL GY ++ I AS+ +++ R Q A ML E ++ +
Sbjct: 40 KLKERGYYTVRDIAFASAKELAEIIGNEERAQQIIEAARKMLGLHSFISALEVYERRKMI 99
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
RI+T LD +LGGG+ R VTE+ G G GKTQL QLAV VQ+P + GGLG KAIY
Sbjct: 100 RRISTGVRALDELLGGGVETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIY 159
Query: 114 --------------IGKCLGFYTEQS-AVINYLDKFVSEHK--------------DVKVV 144
I K G +Q+ I Y + S+H+ +V ++
Sbjct: 160 IDTENTFRPERIMQIAKARGLDPDQALHNIFYARAYSSDHQMILVDQAKSIIKQHNVALL 219
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 220 VVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>gi|374628649|ref|ZP_09701034.1| DNA repair and recombination protein RadA [Methanoplanus limicola
DSM 2279]
gi|373906762|gb|EHQ34866.1| DNA repair and recombination protein RadA [Methanoplanus limicola
DSM 2279]
Length = 324
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 65/254 (25%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE------- 48
+++ LP + T KL +GY+++ I +AS +D++ G TA +++E
Sbjct: 4 LDIEDLPGVGPTTADKLRESGYSTIEGIATASYADLAEAAEIGESTAKKLIKEARKMADI 63
Query: 49 -----------EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E++ + +++T + D++L GG ++E G G GK+Q+ QLAVN
Sbjct: 64 GGFKTGTIVLEERKKVRKLSTLVPEFDDLLAGGFETMSISECYGEFGSGKSQISHQLAVN 123
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------SAVINYLDK------FVSE 137
Q+P+E GGL G IYI F E+ V ++L+ F S+
Sbjct: 124 SQLPLEVGGLDGSVIYIDTENTFRPERIRQMVEGLELDIEVPPVEDFLEHIHVAEAFTSD 183
Query: 138 H-------------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
H K V+++++DS+ HFR + L++R + L+ L
Sbjct: 184 HQMLLAESVRELGNELKDTDKPVRLIVVDSLMAHFRAEYAGRGTLSVRQQKLNKHMYDLA 243
Query: 176 NLAKKFSLALLEPN 189
LAK+F+ +L N
Sbjct: 244 KLAKEFNAVVLVTN 257
>gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
gi|166218766|sp|A3MXX9.1|RADA_PYRCJ RecName: Full=DNA repair and recombination protein RadA
gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
Length = 332
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 53/229 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-------RGTQ---TAWDML-----------QEEQES 52
KL GY ++ + AS +++ R Q A ML E ++
Sbjct: 38 AKLKEKGYYTVRDVAYASVKELAEIVGSEERAQQIVEAARKMLGLHSFISALEVYERRKK 97
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P + GGLG KAI
Sbjct: 98 IRRISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAI 157
Query: 113 Y--------------IGKCLGFYTEQS-AVINYLDKFVSEHK--------------DVKV 143
Y I K G +Q+ I Y + ++H+ +V +
Sbjct: 158 YIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHNVAL 217
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 218 LVVDSVIAHFRAEFPGRENLAERQQKLNKHIADLLRLADAYDVAVVVTN 266
>gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum]
Length = 315
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+ E GGL
Sbjct: 76 ERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLAEERGGL 135
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G +Q+ I Y + S+H+
Sbjct: 136 GAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQ 195
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++I+DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 196 HNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 249
>gi|327292132|ref|XP_003230774.1| PREDICTED: DNA repair protein RAD51 homolog 3-like, partial [Anolis
carolinensis]
Length = 186
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 16/143 (11%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L+EEQ + I T C+ LD +LGGGI ++TEI G PG+GKTQL +QL V++QI
Sbjct: 37 TALELLEEEQ-AQGFIVTFCSALDGVLGGGIQLGKITEICGAPGVGKTQLCMQLTVDIQI 95
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKD------VKVVIIDSI 149
P FGGL G+A++I F ++ A + + H D ++ +D+I
Sbjct: 96 PESFGGLAGEAVFIDTEGSFMVDRVADMAVACVQHCRLIAETHPDEDHPPALETFSLDNI 155
Query: 150 ---AFHFR-HGFVDLALRTRVLS 168
++FR H +V+L + +L
Sbjct: 156 LSHIYYFRCHDYVELLAQVYLLP 178
>gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp.
AL-21]
gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp.
AL-21]
Length = 311
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS-----------------RGTQ-- 40
+E+ +LP + KL AG+ + + +A++ ++S R ++
Sbjct: 2 VELEELPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKSEQI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA D++ E ++ + R+TT LD ++GGGI + +TE+ G G GK+Q+ +LAV
Sbjct: 62 DFETAMDVM-ERRKDVGRVTTGSTGLDELIGGGIETQSITEVFGEFGSGKSQISHELAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK--- 139
VQ+P E GGLGG+ ++I F E+ I+ F S H+
Sbjct: 121 VQLPPEKGGLGGQCVFIDTENTFRPERIKQIAEGFELDVEEVLTNIHIARAFNSSHQILM 180
Query: 140 ------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
++K+VI+DS+ HFR +V LA R + L+ L N+A +++A
Sbjct: 181 ADKVNELIQSGANIKLVIVDSLTAHFRAEYVGRESLATRQQKLNQHLHTLSNIANTYNVA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|424513661|emb|CCO66283.1| RAD51C protein [Bathycoccus prasinos]
Length = 381
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 31/142 (21%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDIS-------------------------- 36
++ LP+S T R KL G+ ++ + S +
Sbjct: 34 LNALPLSPTVRAKLQFCGFNAVQDVLRHHSLPVQLVKSVPSLTLDEAQDVLKACRCGLDG 93
Query: 37 ---RGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQ 93
RG ++A ++L++EQE + + T CA +D ILGGG+ E+TE G PG+GKTQ+G+Q
Sbjct: 94 FALRGAKSASELLKKEQERIP-LMTFCAQVDGILGGGVQTGEITEFCGAPGVGKTQIGMQ 152
Query: 94 LAVNVQIPVE-FGGLGGKAIYI 114
LAV+VQ+P E F G G+ +Y+
Sbjct: 153 LAVSVQLPKEFFCGNEGECVYV 174
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 110 KAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
K I++ +C TE A ++++ +FV EH VK+V++DSIAFHFR F D+ALR +L+
Sbjct: 229 KRIHVFRCHEV-TELLACLDHMPEFVKEHPKVKLVVVDSIAFHFRQDFDDMALRASILAK 287
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
LM+LAKK LA++ N ATT
Sbjct: 288 TTNNLMSLAKKHELAVVTINQATT 311
>gi|320166280|gb|EFW43179.1| RAD51L1 [Capsaspora owczarzaki ATCC 30864]
Length = 358
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 9/192 (4%)
Query: 5 KLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLD 64
+ P Q L + + ++ + S +++ + R DML + + TS A LD
Sbjct: 36 RTPFELFQSLDLPRSAFDAMIAAVSHATAPVPRRVS---DMLISRKTESTFLPTSLAQLD 92
Query: 65 NILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
L GG +TE+ G G GKTQ + LAV +P+E GGLGG +YI F +
Sbjct: 93 AALRGGFAFSTITELVGPSGCGKTQFCMMLAVQASLPLEHGGLGGGVVYIDTESAFSATR 152
Query: 125 SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL--RTRVLSGIALKLMNLAKKFS 182
++ LD+ + E + K+VI+DS+A R + ++ RT LS +A L LA+ FS
Sbjct: 153 ---LDTLDQAIVE-RGAKLVILDSVASLVRKEYDSKSMVQRTAYLSNVASVLKYLAESFS 208
Query: 183 LALLEPNLATTA 194
+ ++ N TT+
Sbjct: 209 IPIVVTNQVTTS 220
>gi|432328525|ref|YP_007246669.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
MAR08-339]
gi|432135234|gb|AGB04503.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
MAR08-339]
Length = 330
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GT 39
+ LP + T KL AGYT L + AS D++ G
Sbjct: 22 LEDLPGVGPTTAEKLRDAGYTDLIELAVASPKDLADVAGIGEGVAQKIILAARKYANVGG 81
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
D++ E ++++ ++TT + D +LGGG+ + +TE G G GKTQ+ QLAVNVQ
Sbjct: 82 FETGDVIYERRKNVTKLTTGSPEFDRLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNVQ 141
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSA---------VINYLDK------FVSEHK----- 139
+P + GGL G AIYI F E+ I+ L K F S H+
Sbjct: 142 LPADKGGLEGHAIYIDTENTFRPERIKQMAEALGLDPIDSLKKIHVARAFNSNHQILLVD 201
Query: 140 ---------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
V+++I+DS+ HFR +V LA R ++L+ L+ A
Sbjct: 202 KAMELAKEYPVRLLIVDSLTAHFRAEYVGRGSLAERQQLLNKHMHDLLKFA 252
>gi|297735394|emb|CBI17834.3| unnamed protein product [Vitis vinifera]
Length = 260
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ T C LD L GG+ C +TE+ G GKTQL +QL ++ Q+P GGL ++YI
Sbjct: 17 KCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYI 76
Query: 115 GKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF----VDLALRTRVLSGI 170
F + + ++ + H V++++IDSIA FR F DL R+ + I
Sbjct: 77 HSEFPFPSRRLQQLSQSFRSSYSHLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKI 136
Query: 171 ALKLMNLAKKFSLALLEPN 189
+ KL LA++F LA++ N
Sbjct: 137 SGKLKALAERFGLAVVVTN 155
>gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum
R1]
gi|13878695|sp|Q9HMM4.2|RADA_HALSA RecName: Full=DNA repair and recombination protein RadA
gi|226736606|sp|B0R7Y4.1|RADA_HALS3 RecName: Full=DNA repair and recombination protein RadA
gi|167728065|emb|CAP14853.1| DNA repair and recombination protein RadA [Halobacterium salinarum
R1]
Length = 343
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ + S+ A+S+++S G TA D++Q E +E
Sbjct: 19 KLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAADVGGFETGATVLERREQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T + ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+GGL G+A+
Sbjct: 79 IGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAV 138
Query: 113 YIGKCLGFYTE--------------QSA-------------------VINYLDK------ 133
+I F E Q+A V +LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKG 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
SEH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
L + ++ A+L N
Sbjct: 259 HDLEKVGNLYNAAVLVTN 276
>gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1]
gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1]
Length = 386
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ + S+ A+S+++S G TA D++Q E +E
Sbjct: 62 KLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAADVGGFETGATVLERREQ 121
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T + ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+GGL G+A+
Sbjct: 122 IGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAV 181
Query: 113 YIGKCLGFYTE--------------QSA-------------------VINYLDK------ 133
+I F E Q+A V +LDK
Sbjct: 182 FIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKG 241
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
SEH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 242 FNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHL 301
Query: 172 LKLMNLAKKFSLALLEPN 189
L + ++ A+L N
Sbjct: 302 HDLEKVGNLYNAAVLVTN 319
>gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
Length = 354
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY SL +I AS ++ GT D +++ES
Sbjct: 55 KLREAGYDSLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRES 114
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 115 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 174
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 175 WIDTENTFRPERIMEIARNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNSE 234
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 235 KPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTN 288
>gi|395646317|ref|ZP_10434177.1| DNA repair and recombination protein radA [Methanofollis liminatans
DSM 4140]
gi|395443057|gb|EJG07814.1| DNA repair and recombination protein radA [Methanofollis liminatans
DSM 4140]
Length = 326
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 66/255 (25%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------- 47
+++ LP + T KL AGY ++ SI +AS +D++ G +A +++
Sbjct: 6 LDLEDLPGVGPTTAEKLREAGYATVESIATASPADLAEAAEIGESSAKKIIKAAREIADI 65
Query: 48 ----------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E+++ + ++ T + D +LGGG+ + +TE+ G G GK+Q+ Q+AVN
Sbjct: 66 GGFKTGIAVLEDRKEVKKLQTLVPEFDALLGGGMETKSITEVYGEFGSGKSQISHQMAVN 125
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ---------------SAVINYLDK------FVS 136
QIP+E GGL G +YI F E+ +L++ + S
Sbjct: 126 CQIPLELGGLNGSCVYIDTENTFRPERIEQMVEGLDIPGYEVPPFTEFLERIHVAKGYTS 185
Query: 137 EHK-------------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+H+ V+++I+DS+ HFR + L++R + L+ L
Sbjct: 186 DHQMLLLESARDLATEMKESDHPVRLIIVDSLTAHFRAEYAGRGTLSVRQQKLNRHMYDL 245
Query: 175 MNLAKKFSLALLEPN 189
+A++F+ L N
Sbjct: 246 AKIAEEFNAVALVTN 260
>gi|390961215|ref|YP_006425049.1| DNA recombination and repair protein, RecA-like protein
[Thermococcus sp. CL1]
gi|390519523|gb|AFL95255.1| DNA recombination and repair protein, RecA-like protein
[Thermococcus sp. CL1]
Length = 354
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY S+ +I AS ++ GT D E++++
Sbjct: 55 KLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMEKRKT 114
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGLGG I
Sbjct: 115 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLGGSVI 174
Query: 113 YIGKCLGFYTE---QSAVINYLDK------------FVSEH------------------- 138
+I F E Q A LD F S H
Sbjct: 175 WIDTENTFRPERIRQIAENRGLDPDETLKNIYVARAFNSNHQMLLVERAEEIIKEKAETD 234
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++++DS+ HFR +V LA R + L+ L +A + +A+ N
Sbjct: 235 RPVKLLVVDSLMAHFRSEYVGRGTLAERQQKLAKHLADLHRIADLYDIAVFVTN 288
>gi|350590542|ref|XP_003483087.1| PREDICTED: hypothetical protein LOC100737799, partial [Sus scrofa]
Length = 385
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 7/91 (7%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++L++E + + I T C+ LDNILGGG+ ++TEI G PG+GKTQL +QLAV+VQI
Sbjct: 37 TALELLEQEH-TQSFIITFCSALDNILGGGVPLTKITEICGAPGVGKTQLCMQLAVDVQI 95
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYL 131
P FGG+ G+A++I TE S ++N +
Sbjct: 96 PECFGGVEGEAVFID------TEGSFMVNRV 120
>gi|255513422|gb|EET89688.1| DNA repair and recombination protein RadA [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 316
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 56/243 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDM--------------- 45
++ LP I T KL +AG +L + ++ D+S + + +
Sbjct: 9 KLEDLPGIGETSAEKLKAAGIDTLEKVATSQPHDLSEKSGISVEAAKKAIQAAQEATTIE 68
Query: 46 ------LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+ E++++L +I+T+ DLD ++GGGI +TE+ G GKTQL QLAVN Q
Sbjct: 69 FETGTNIAEKRQALGKISTNSKDLDELIGGGIEINAITEVYGKFASGKTQLAFQLAVNAQ 128
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVIN 129
+P + GG+ GK ++I F E Q I
Sbjct: 129 LPKDKGGVDGKVLFIDTEGTFRPERIEEIAKAKGIDPKTALENIMVVRATSSEKQMLTIE 188
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186
D + E K +K++IIDS+ FR F+ L R + L+ KL LA K+ +A+
Sbjct: 189 RADSLIRE-KGIKLIIIDSLTALFRAEFLGRGALGERQQKLNSHMHKLQQLADKYDVAVY 247
Query: 187 EPN 189
N
Sbjct: 248 VTN 250
>gi|433417120|ref|ZP_20404636.1| DNA repair and recombination protein RadA [Haloferax sp. BAB2207]
gi|432200139|gb|ELK56249.1| DNA repair and recombination protein RadA [Haloferax sp. BAB2207]
Length = 343
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 109/258 (42%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSIDDEETMQALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera
stadtmanae DSM 3091]
gi|121731077|sp|Q2NE95.1|RADA_METST RecName: Full=DNA repair and recombination protein RadA
gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091]
Length = 311
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA++++ E +E + RITT LD ++GGGI + +TE+ G G GK+Q+ +L+V Q
Sbjct: 64 ETAFEVM-ERREDVGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQ 122
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK----- 139
+PVE GGL G+ ++I F E+ I L K F S H+
Sbjct: 123 LPVEEGGLDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQILMAD 182
Query: 140 ----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
++K++IIDS+ HFR +V LA R + L+ L +A +++A+L
Sbjct: 183 KINELIQSGVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLHTLQTIANTYNVAVL 242
Query: 187 EPN 189
N
Sbjct: 243 ITN 245
>gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
SNP6]
gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
SNP6]
Length = 328
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG++++ +I AS S++S G TA D + E +
Sbjct: 28 KLREAGFSTIEAIAVASPSELSAAAEIGESTAAKIISAARKLADVGGFESGDKVLERRRR 87
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT LD +LGGG+ + +TE+ G G GKTQ+ QLAVNVQ+P + GGL G I
Sbjct: 88 IGKITTGSKALDELLGGGVETQSITELFGEFGSGKTQICHQLAVNVQLPRDLGGLEGSVI 147
Query: 113 YIGKCLGFYTE---QSAVINYLD-------------------------------KFVSEH 138
I F E Q A LD K E
Sbjct: 148 VIDTENTFRPERIIQMAEAKGLDPEEVLRNIYVAQAYNSNHQMLLVDNAKELANKLKKEG 207
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K VK++I+DS+ HFR +V LA R + L+ LM + F+ A++ N
Sbjct: 208 KQVKLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHLHDLMRFGEIFNAAIVVTN 261
>gi|448597787|ref|ZP_21654712.1| DNA repair and recombination protein RadA [Haloferax alexandrinus
JCM 10717]
gi|445739248|gb|ELZ90757.1| DNA repair and recombination protein RadA [Haloferax alexandrinus
JCM 10717]
Length = 343
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 109/258 (42%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEVLEATLEDREMEGSIDDEETMQALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|352682863|ref|YP_004893387.1| DNA repair protein [Thermoproteus tenax Kra 1]
gi|350275662|emb|CCC82309.1| DNA repair protein [Thermoproteus tenax Kra 1]
Length = 382
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 111/259 (42%), Gaps = 70/259 (27%)
Query: 1 MEVSKLPISATQRG-----------------KLISAGYTSLSSICSASSSDIS------- 36
+EV++ P++ +RG KL GY ++ + AS +I+
Sbjct: 58 VEVAEEPVAVVERGADADVEELEGIGRVTGQKLKERGYYTVRDLAFASVKEIADIIGNEE 117
Query: 37 RGTQ---TAWDML-----------QEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
R Q A ML + ++ RI+T LD +L GG+ VTE+ G
Sbjct: 118 RAAQIIEAARSMLGLSNFISALEVYRRRVNIKRISTGVRSLDELLNGGVETSAVTEVAGE 177
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV--------------- 127
G GKTQ QLAV VQ+P + GGL KAIYI F E+ A
Sbjct: 178 FGAGKTQFCHQLAVMVQLPEDKGGLSAKAIYIDTENTFRPERIAQIARARGLDPDQALKN 237
Query: 128 INYLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
I Y + S+H+ +VK++++DSI HFR F +LA R + L+
Sbjct: 238 IYYARAYSSDHQMILAEQARRIIKQDNVKLLVVDSIVAHFRAEFPGRENLAERQQKLNKH 297
Query: 171 ALKLMNLAKKFSLALLEPN 189
L+ +A + +A++ N
Sbjct: 298 IADLLKIADAYDVAVVVTN 316
>gi|424812469|ref|ZP_18237709.1| DNA repair and recombination protein RadA [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756691|gb|EGQ40274.1| DNA repair and recombination protein RadA [Candidatus Nanosalinarum
sp. J07AB56]
Length = 316
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 34/215 (15%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGT-QTAWDMLQEEQESLARITTSCADLDNI 66
+SA + + G +S +I +++ + G +T D E ++ + RITTSC D I
Sbjct: 35 MSAGELAEKADLGESSAQTIITSARQKVDVGGFETGMDK-HERRKGMKRITTSCEAFDEI 93
Query: 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTE 123
LGGGI + +TE G G KTQ+ QLAVNVQ+P GG+ A+YI F E
Sbjct: 94 LGGGIESQCITEFYGEYGSAKTQISHQLAVNVQLPEGAGGMDRGAVYIDTEDTFTPERVE 153
Query: 124 QSAVINYLDK------------FVSEHK--------------DVKVVIIDSIAFHFRHGF 157
Q A LD F S+H+ D+ +V++DS+ FR +
Sbjct: 154 QMAEDKDLDPEEVLENIHVARAFNSDHQVLLAEEAQDICQENDIGLVVVDSLTAQFRSDY 213
Query: 158 V---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V +LA R + L+ L+ LA + A++ N
Sbjct: 214 VGRGELAERQQKLNKHMNTLLRLANSHNAAVVVTN 248
>gi|333988516|ref|YP_004521123.1| DNA repair and recombination protein radA [Methanobacterium sp.
SWAN-1]
gi|333826660|gb|AEG19322.1| DNA repair and recombination protein radA [Methanobacterium sp.
SWAN-1]
Length = 311
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS-----------------RGTQ-- 40
+E+ LP + KL AG+ + + +A++ ++S R ++
Sbjct: 2 VELEDLPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKSEQI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA D++ E ++ + R+TT D ++GGGI + +TE+ G G GK+Q+ ++AV
Sbjct: 62 DFETALDVM-ERRKDVGRLTTGSTGFDELIGGGIETQSITEVFGEFGSGKSQISHEIAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAV 127
VQ+P E GGLGG+ ++I F E Q +
Sbjct: 121 VQLPPEKGGLGGECVFIDTENTFRPERIKQIADGFELDVEEVLQKIHIARAFNSSHQILM 180
Query: 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
+ +++ + + D+K+VI+DS+ HFR +V LA R + L+ L +A +++A
Sbjct: 181 ADKINELIQKGTDIKLVIVDSLTAHFRAEYVGRETLATRQQKLNQHLHTLQTIANTYNVA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|432330176|ref|YP_007248319.1| DNA repair and recombination protein RadA [Methanoregula formicicum
SMSP]
gi|432136885|gb|AGB01812.1| DNA repair and recombination protein RadA [Methanoregula formicicum
SMSP]
Length = 325
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 66/242 (27%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+E+ LP + + KL AGY S+ SI +AS +++S
Sbjct: 6 LEIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEVSEISESTAKKIIKAAREAADV 65
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+ E+++ + +++ +LD +LGGG+ + +TE+ G G GK+Q+ Q+AV
Sbjct: 66 GGFKTGKDIF-EQRKDVRKLSFRVPELDTLLGGGLETQAITEMYGEFGSGKSQIVHQMAV 124
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN------------YLDK------FVSE 137
NVQ+P E GGL G IYI F E+ ++N +LD S+
Sbjct: 125 NVQLPEEEGGLNGSVIYIDTENTFRPERIEQMVNGLGLDNIPDTQEFLDNIHIARAHTSD 184
Query: 138 H-------------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
H K VK+ IIDS+ HFR + LA R + L+ +L
Sbjct: 185 HQMLLIDNSRELATELKENGKPVKLFIIDSLTAHFRAEYAGRGTLAARQQKLNRHMHELF 244
Query: 176 NL 177
L
Sbjct: 245 KL 246
>gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus
DSM 4304]
gi|3914552|sp|O29269.1|RADA_ARCFU RecName: Full=DNA repair and recombination protein RadA
gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304]
Length = 337
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY+++ ++ AS S+++ G + D + E + S
Sbjct: 27 KLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANIGGFESGDKVLERRRS 86
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT DLD +LGGG+ + +TE G G GKTQ+ QLAVNVQ+P + GGL G I
Sbjct: 87 VKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVI 146
Query: 113 YIGKCLGFYTE---QSAVINYLD-------------------------------KFVSEH 138
I F E Q A LD K E
Sbjct: 147 IIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEG 206
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ V+++I+DS+ HFR +V LA R + L+ LM + ++ A++ N
Sbjct: 207 RPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTN 260
>gi|223477408|ref|YP_002581811.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
Length = 352
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 99/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY S+ +I AS ++ GT D E++++
Sbjct: 53 KLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMEKRKT 112
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +I+T LD +LGGGI + +TE+ G G GKTQL LAV VQ P E GGLGG I
Sbjct: 113 IGKISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQKPPEEGGLGGSVI 172
Query: 113 YIGKCLGFYTE---QSAVINYLDK------------FVSEH------------------- 138
+I F E Q A LD F S H
Sbjct: 173 WIDTENTFRPERIRQIAEARGLDPDETLKNIYVARAFNSNHQMLLVEKAEEIIKEKATTD 232
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++++DS+ HFR +V LA R + L+ L LA + +A+ N
Sbjct: 233 RPVKLLVVDSLMAHFRSEYVGRGSLAERQQKLAKHLADLHRLADLYDIAVFVTN 286
>gi|116245799|ref|XP_001230756.1| AGAP003791-PA [Anopheles gambiae str. PEST]
gi|116130977|gb|EAU77376.1| AGAP003791-PA [Anopheles gambiae str. PEST]
Length = 290
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++A D +EE E+ + T C DLD LG GI +TE+ G PG GKTQL +QLAVNVQ
Sbjct: 4 KSALDWWREE-EARTGLVTFCRDLDLALGSGIPEGMITELCGPPGSGKTQLCLQLAVNVQ 62
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINY------------------------ 130
IP + GGL G+A+Y+ GF+ ++ A N+
Sbjct: 63 IPQQLGGLQGRAVYLDTNYGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFSEATA 122
Query: 131 LDKFVSEH---------------------KDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
LD + H + +K++++DS++F R+ R + +
Sbjct: 123 LDNILYSHVTNCTQILEAIAVLQNRLYDGEKIKLIVLDSLSFLIRNTNTRSMKRVKRVHE 182
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
I L LA +F ++ N TT
Sbjct: 183 ILTLLHKLAHRFGCVVIVTNDVTT 206
>gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus
gammatolerans EJ3]
gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus
gammatolerans EJ3]
Length = 355
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY S+ +I AS ++ GT D E++ +
Sbjct: 56 KLREAGYDSIEAIAVASPLELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMEKRRT 115
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +I+T LD +LGGGI + +TE+ G G GKTQL LAV VQ P E GGLGG I
Sbjct: 116 IGKISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQKPPEEGGLGGSVI 175
Query: 113 YIGKCLGFYTE---QSAVINYLDK------------FVSEH------------------- 138
+I F E Q A LD F S H
Sbjct: 176 WIDTENTFRPERIRQIAEARGLDPDEVLKNIYVARAFNSNHQMLLVEKAEEIIKEKASTD 235
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++++DS+ HFR +V LA R + L+ L LA + +A+ N
Sbjct: 236 RPVKLLVVDSLMAHFRSEYVGRGSLAERQQKLAKHLADLHRLADLYDIAVFVTN 289
>gi|110669303|ref|YP_659114.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
DSM 16790]
gi|385804867|ref|YP_005841267.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
C23]
gi|121692072|sp|Q18EU1.1|RADA_HALWD RecName: Full=DNA repair and recombination protein RadA
gi|109627050|emb|CAJ53526.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
DSM 16790]
gi|339730359|emb|CCC41689.1| DNA repair and recombination protein RadA [Haloquadratum walsbyi
C23]
Length = 343
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ AG+ S +I AS +++S G TA D++
Sbjct: 5 ELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+ +E + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGAAVLQRREEIGKLSWKIPEVDELLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGLGG AI++ F E+
Sbjct: 125 QLPPEHGGLGGAAIFVDSEDTFRPER 150
>gi|448544133|ref|ZP_21625446.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-646]
gi|448551145|ref|ZP_21629287.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-645]
gi|448558362|ref|ZP_21633036.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-644]
gi|445705637|gb|ELZ57530.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-646]
gi|445710701|gb|ELZ62499.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-645]
gi|445713250|gb|ELZ65029.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-644]
Length = 343
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E ++ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSIDDEETMKALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|448293826|ref|ZP_21483929.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|2500108|sp|Q48328.1|RADA_HALVD RecName: Full=DNA repair and recombination protein RadA
gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii]
gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|445569747|gb|ELY24318.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
Length = 343
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 83/262 (31%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E ++ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLDDREMEGSIDDEETIKALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPNLATT 193
LM + F+ +L N ++
Sbjct: 259 HDLMRIGDLFNTGILVTNQVSS 280
>gi|448573639|ref|ZP_21641122.1| DNA repair and recombination protein RadA [Haloferax lucentense DSM
14919]
gi|445718545|gb|ELZ70235.1| DNA repair and recombination protein RadA [Haloferax lucentense DSM
14919]
Length = 343
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 107/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLTDTGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSIDDEETMQALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|367013438|ref|XP_003681219.1| hypothetical protein TDEL_0D04240 [Torulaspora delbrueckii]
gi|359748879|emb|CCE92008.1| hypothetical protein TDEL_0D04240 [Torulaspora delbrueckii]
Length = 461
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCAD 62
V L ++A + +++ +S S + ++ + L E E +T+
Sbjct: 33 VELLTVNAKELARILQRSINEVSKFQEVLSLEFNKQLTQSKPSLTAEIEDPKSFSTTDVS 92
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT 122
+D+ LGGGI +TEI G GK+QL +QL++ VQ+P + GGLGGK +YI T
Sbjct: 93 IDDALGGGIHTHGITEIFGESSTGKSQLLMQLSLAVQLPPKLGGLGGKCVYITTEGDLPT 152
Query: 123 E--------------------------------QSAVINYLDKFVSEHKD--VKVVIIDS 148
+ Q ++N + E+ + +K+VIIDS
Sbjct: 153 QRLQEMIASRPEFKENGVSQDNIFTVSCNDLVNQEHILNVQLPILLENHEGAIKLVIIDS 212
Query: 149 IAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTC 203
I+ H R F D + +A L+NLA+K LA++ N L++ TC
Sbjct: 213 ISHHLRVELESKSFKDFQGNKFYIDQMAEGLLNLARKHLLAIVVANQVGDKPLSDRVDTC 272
Query: 204 LRDSGSRKAVAAAAAQLGFVL 224
R+ V QLG+++
Sbjct: 273 ------RQDVDNYEYQLGWMV 287
>gi|387912860|sp|Q9V233.2|RADA_PYRAB RecName: Full=DNA repair and recombination protein RadA
gi|380740983|tpe|CCE69617.1| TPA: DNA repair and recombination protein RadA [Pyrococcus abyssi
GE5]
Length = 353
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AG+ +L +I AS ++ GT D +++ES
Sbjct: 54 KLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRES 113
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 114 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 173
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 174 WIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 233
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 234 KPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTN 287
>gi|448582805|ref|ZP_21646309.1| DNA repair and recombination protein RadA [Haloferax gibbonsii ATCC
33959]
gi|445732453|gb|ELZ84036.1| DNA repair and recombination protein RadA [Haloferax gibbonsii ATCC
33959]
Length = 343
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 108/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V + LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDDVLEATLADREIEGSVDDEETMQALVDDVLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5]
gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination
protein radA [Pyrococcus abyssi GE5]
Length = 356
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AG+ +L +I AS ++ GT D +++ES
Sbjct: 57 KLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRES 116
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 117 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 176
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 177 WIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 236
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 237 KPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTN 290
>gi|189237371|ref|XP_971150.2| PREDICTED: similar to GA17378-PA [Tribolium castaneum]
Length = 272
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 39/186 (20%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RI+T C+ +D I GGI ++EI G G+GKTQL +QL++ Q+P+ GGLG +Y+
Sbjct: 36 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVYL 95
Query: 115 GKCLGFYTEQ-------------SAVINYLDKFVSEH---------------------KD 140
F ++ IN+ D EH K+
Sbjct: 96 CTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLVKN 155
Query: 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL-KLMN-LAKKFSLALLEPNLAT---TAN 195
V +V+IDSIA FR +D+ + R I + L+N LAKK+ A++ N T T N
Sbjct: 156 VGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDNPTTN 215
Query: 196 LAESCL 201
+ E CL
Sbjct: 216 VTEPCL 221
>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
evestigatum Z-7303]
gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
evestigatum Z-7303]
Length = 325
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 27/150 (18%)
Query: 15 KLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQE 51
KL +GY S+ +I AS +D+S G +T D++ E ++
Sbjct: 19 KLRESGYNSVEAIAVASPTDLSLSADIGESAASKIINSARRSANIGGFETG-DLVMERRK 77
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ +++T C++ D ++ GGI + +TE+ G G GKTQ+ QLAVNVQ+P E GGL G
Sbjct: 78 QVGKLSTGCSEFDEMMEGGIDTQSITELYGEFGSGKTQIAHQLAVNVQLPNEQGGLNGSV 137
Query: 112 IYIGKCLGFYTEQSAVINYLDKFVSEHKDV 141
I+I F E+ I + + SEH ++
Sbjct: 138 IFIDTENTFRPER---IKQMVQGASEHHNI 164
>gi|270008164|gb|EFA04612.1| spindle B [Tribolium castaneum]
Length = 274
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 39/186 (20%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RI+T C+ +D I GGI ++EI G G+GKTQL +QL++ Q+P+ GGLG +Y+
Sbjct: 38 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVYL 97
Query: 115 GKCLGFYTEQ-------------SAVINYLDKFVSEH---------------------KD 140
F ++ IN+ D EH K+
Sbjct: 98 CTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLVKN 157
Query: 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL-KLMN-LAKKFSLALLEPNLAT---TAN 195
V +V+IDSIA FR +D+ + R I + L+N LAKK+ A++ N T T N
Sbjct: 158 VGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDNPTTN 217
Query: 196 LAESCL 201
+ E CL
Sbjct: 218 VTEPCL 223
>gi|448589259|ref|ZP_21649418.1| DNA repair and recombination protein RadA [Haloferax elongans ATCC
BAA-1513]
gi|445735687|gb|ELZ87235.1| DNA repair and recombination protein RadA [Haloferax elongans ATCC
BAA-1513]
Length = 343
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 107/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q V + LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDDVLEATLADRGIEGSVDDEETMQELVDDVLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTDWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter
ruminantium M1]
gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter
ruminantium M1]
Length = 311
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGEKTAEKLREAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKAEKI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA+D++ E + + RITT ++D ++GGGI + +TE+ G G GK+Q+ +LAV
Sbjct: 62 DFETAFDVM-ERRRDVGRITTGSKNVDELIGGGIETQSITEVFGEFGSGKSQISHELAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE-------------QSAV--INYLDKFVSEHK--- 139
VQ+P E GGL G+ ++I F E + A+ I+ F S H+
Sbjct: 121 VQLPKERGGLEGECVFIDTENTFRPERIEQIADACGIDREEALQRIHIARAFNSSHQILM 180
Query: 140 ------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
+V++VI+DS+ HFR +V LA R + L+ L +A +++A
Sbjct: 181 AEKINELIQSGVNVRLVIVDSLMAHFRAEYVGRESLATRQQKLNQHLHALQQIANTYNVA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFLTN 245
>gi|195446056|ref|XP_002070607.1| GK10943 [Drosophila willistoni]
gi|194166692|gb|EDW81593.1| GK10943 [Drosophila willistoni]
Length = 349
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 51/225 (22%)
Query: 18 SAGYTSLSSICSASSSDISRGTQTAWDMLQEEQES------------LARITTSCADLDN 65
S SL IC+ + + W L E S +RIT C LD
Sbjct: 41 SKSLHSLVRICTPDDVRVLKDAAAKW--LAETPMSADSLFKPLANVRWSRITFGCPALDR 98
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG---------------- 109
GGGI R +TEI G G+GKTQL +QLAV VQ+P+ GGL
Sbjct: 99 CTGGGIVTRGITEICGASGVGKTQLLLQLAVCVQLPLHLGGLARGVAFICTEDAFPSRRM 158
Query: 110 -------KAIYIGKCLGF----YTEQ--------SAVINYLDKFVSEHKDVKVVIIDSIA 150
+A Y + L F + EQ V N L + + +H + ++IIDS+A
Sbjct: 159 LEISKVFEARYPKENLNFLANVFVEQQFEVKPLLECVSNRLPQLMQQHA-IGLIIIDSVA 217
Query: 151 FHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
FR F D RTR + +A L+ A K++ A++ N T+++
Sbjct: 218 AIFR-LFTDYDERTRDMRRLANDLLTYADKYNCAVICINQMTSSS 261
>gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides
burtonii DSM 6242]
gi|121691598|sp|Q12UG7.1|RADA_METBU RecName: Full=DNA repair and recombination protein RadA
gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides
burtonii DSM 6242]
Length = 325
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 62/206 (30%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+T++ +I AS ++++ G TA D++ E ++
Sbjct: 19 KLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAARQSADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++T C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+P E GGLGG I
Sbjct: 79 VGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIAHQLAVNVQLPPEQGGLGGSVI 138
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEHK------------ 139
I F E+ A I+ F S H+
Sbjct: 139 MIDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELAN 198
Query: 140 -------DVKVVIIDSIAFHFRHGFV 158
VK++I+DS+ HFR ++
Sbjct: 199 ELKNTEMPVKLLIVDSLTAHFRAEYI 224
>gi|170068519|ref|XP_001868898.1| RAD51C protein [Culex quinquefasciatus]
gi|167864512|gb|EDS27895.1| RAD51C protein [Culex quinquefasciatus]
Length = 275
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 52/206 (25%)
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
T+T D+L +E L I T C DLD+ +G G+ +TE G PG GKTQ+ +QL VN
Sbjct: 3 TKTCADLLPQEAR-LPGIITFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQMCLQLCVN 61
Query: 98 VQIPVEFGGLGGKAIYIGKCLGF---------------------------------YTEQ 124
+P E GGLGGK++Y+ GF +T +
Sbjct: 62 ANLPKELGGLGGKSLYLDTNFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAE 121
Query: 125 SAV-----------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167
S + I+ L++ + + +++V+IDS +F R + R R+
Sbjct: 122 SVMESVLYNHVHVCNDLNKSIDTLERLLKLGEKIRLVVIDSYSFLIRCNIENTLERIRID 181
Query: 168 SGIALKLMNLAKKFSLALLEPNLATT 193
+ +L LA++F A++ N TT
Sbjct: 182 HTVLNRLQILAQQFKFAIVLTNDVTT 207
>gi|435852388|ref|YP_007313974.1| DNA repair and recombination protein RadA [Methanomethylovorans
hollandica DSM 15978]
gi|433663018|gb|AGB50444.1| DNA repair and recombination protein RadA [Methanomethylovorans
hollandica DSM 15978]
Length = 325
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KLI AG++++ +I +S ++++ G TA D++ E ++
Sbjct: 19 KLIDAGFSTVEAIAVSSPAELATAADIGESTAAKIILAARKAADIGGFETGDVVMERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++T C + ++I+GGGI + +TE+ G G GKTQLG QLAVNVQ+P E GGL G I
Sbjct: 79 VGKLSTGCKEFNDIMGGGIDSQAITEVYGEFGSGKTQLGHQLAVNVQLPQEKGGLNGSVI 138
Query: 113 YIGKCLGFYTEQ 124
I F E+
Sbjct: 139 MIDTENTFRPER 150
>gi|336477843|ref|YP_004616984.1| DNA repair and recombination protein RadA [Methanosalsum zhilinae
DSM 4017]
gi|335931224|gb|AEH61765.1| DNA repair and recombination protein RadA [Methanosalsum zhilinae
DSM 4017]
Length = 325
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 65/240 (27%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KLI AG+ ++ +I AS ++I+ G TA DM+ + ++
Sbjct: 19 KLIDAGFNTIEAIAVASPAEIATSADIGESTAAKIINAARKSADIGGFETGDMVLDRRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + + +LGGG+ + +TE+ G G GKTQ+ QLAVNVQ+P E GGL G I
Sbjct: 79 VGKLTTGCTEFNEMLGGGVETQSITELYGEFGSGKTQVAHQLAVNVQLPKEKGGLNGSVI 138
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEH------------- 138
I F E+ A I+ + S H
Sbjct: 139 MIDTENTFRPERIAQMVDGLSQKHGEDYDPEEFLKHIHVARAYNSNHQILLSDSASELAN 198
Query: 139 ------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ V++ I+DS+ HFR +V LA R + L+ L L F+ A++ N
Sbjct: 199 ELKNTERPVRLFIVDSLTAHFRAEYVGRGTLADRQQKLNKHLHDLQRLGDLFNAAVIVTN 258
>gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii
GP6]
gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii
GP6]
Length = 325
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 44/195 (22%)
Query: 8 ISATQRGKLISA---GYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLD 64
I+ G+L+SA G + + I + + G D + E ++ + ++TTSC D
Sbjct: 31 IAVASPGELVSAAEVGEATAAKIIAGAREAADVGGFETGDRILERRKQVGKVTTSCKSFD 90
Query: 65 NILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+LGGG+ + + E+ G G GKTQ+ QLAVN+Q+PVE GGL G I I F E+
Sbjct: 91 ELLGGGMETQAIVELYGEFGCGKTQVAHQLAVNIQLPVEMGGLNGSVIIIDTENTFRPER 150
Query: 125 S----------------------AVINYLDKFVSEH-------------------KDVKV 143
IN F S H + V++
Sbjct: 151 IDQMVKGLPPAPDGRIWETEDFLKNINVARAFNSNHQILLAESAMDLAEKVKDSERPVRL 210
Query: 144 VIIDSIAFHFRHGFV 158
+I+DS+ HFR +V
Sbjct: 211 LIVDSVTAHFRAEYV 225
>gi|343471276|emb|CCD16262.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 520
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 32 SSDISRGTQTAWDMLQ-EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
S D++ ++ D+L+ E L +T+ C LD +LGGG VTE+ G PG+GKTQL
Sbjct: 90 SCDVAPTIRSLRDLLELGEATELESVTSLCRSLDVLLGGGPRVGAVTELCGPPGVGKTQL 149
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDVKV 143
+QLAVN +P E GGL G ++I F +E+ A +N+++K VS + V +
Sbjct: 150 SMQLAVNCLLPKELGGLDGGCLFIDTEGSFLSERFCEIAQAAVNHVEKIVSHRESVGI 207
>gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola
SANAE]
gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola
SANAE]
Length = 323
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 64/241 (26%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTA------------- 42
M + LP + KL AGYTS+ +I AS S+++ G TA
Sbjct: 5 MTIEDLPGVGPATADKLKEAGYTSIEAIAVASPSELAAAAEVGENTASKIVAAAKKCSNI 64
Query: 43 -----WDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
D + E ++ + ++ T LD +LGGG+ + +TE G G GKTQ+ QLAV
Sbjct: 65 GGFETGDTVFERRKQVGKLKTGSNALDELLGGGVETQSITEFYGEFGSGKTQVAHQLAVK 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-------------------INYLDKFVSEH 138
VQ+P E GGLGG I I F E+ A I+ + S H
Sbjct: 125 VQLPPEEGGLGGSVIMIDTENTFRPERIAQMVKGLKGGEDLDPEEFLKNIHVARAYNSNH 184
Query: 139 -------------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+ VK++I+DS+ HFR +V LA R + L+ LM
Sbjct: 185 QILLVESASELAEKMRDSDRPVKLIIVDSLTAHFRSEYVGRGTLADRQQKLNKHMHDLMR 244
Query: 177 L 177
Sbjct: 245 F 245
>gi|288931813|ref|YP_003435873.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
10642]
gi|288894061|gb|ADC65598.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
10642]
Length = 340
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 62/250 (24%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+++ +LP + + KL AGY+++ +I AS ++S
Sbjct: 25 IDLEELPNVGPSTAEKLREAGYSTIEAIAVASPQELSSAADIPESTAAKIIAAARKFANI 84
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T +L E ++++ +ITT LD++LGGG+ + +TE+ G G GKTQ+ QLAV
Sbjct: 85 GGFETGLTIL-ERRKNIGKITTGSKALDDLLGGGVETQAITELFGEFGSGKTQICHQLAV 143
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTE---QSAVINYLD--------------------- 132
NVQ+P E GGL G + I F E Q A LD
Sbjct: 144 NVQLPKEKGGLNGVVVVIDTEGTFRPERIVQMAKAKDLDPDVALENIYVAQAYNSNHQML 203
Query: 133 ----------KFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK 179
K E K V+++++DS+ HFR ++ LA R + L+ L+ +
Sbjct: 204 LVDNAKELANKLRKEGKHVRLLVVDSLTAHFRAEYIGRGTLADRQQKLNRHLHDLLRFGE 263
Query: 180 KFSLALLEPN 189
F+ A++ N
Sbjct: 264 LFNAAIVVTN 273
>gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
Length = 337
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 32/170 (18%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ RI+T LD +L GG+ VTE+ G G GKTQ QLAV VQ+P + GGL KA
Sbjct: 102 NIKRISTGVRSLDELLNGGVETGAVTEVAGEFGAGKTQFCHQLAVMVQLPEDRGGLNAKA 161
Query: 112 IYI--------------GKCLGFYTEQS-AVINYLDKFVSEHK--------------DVK 142
IYI + G +Q+ I Y + S+H+ +VK
Sbjct: 162 IYIDTENTFRPERITQMARARGLDPDQALKNIYYARAYSSDHQMILVEQARRIIKQDNVK 221
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI HFR F +LA R + L+ L+ +A + +A++ N
Sbjct: 222 LLVVDSIVAHFRAEFPGRENLAERQQKLNKHIADLLKIADAYDVAVVVTN 271
>gi|366998431|ref|XP_003683952.1| hypothetical protein TPHA_0A04450 [Tetrapisispora phaffii CBS 4417]
gi|357522247|emb|CCE61518.1| hypothetical protein TPHA_0A04450 [Tetrapisispora phaffii CBS 4417]
Length = 466
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 44/206 (21%)
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116
TT ++DN+LGGGI +TEI G GK+Q + L+++VQ+P+ GGL GK++YI
Sbjct: 88 TTGDVEIDNLLGGGIYTHGITEIFGESSTGKSQFLMLLSLSVQLPLSLGGLNGKSVYITT 147
Query: 117 ---------------------------------CLGFYTEQSAVINYLDKFVSEHKDVKV 143
C T++ + L + ++KD+ +
Sbjct: 148 EGDLPTERLKEIITSRPEFSNNNVSQSNIFTVGCNDLMTQEHIIKVQLPVLLEQNKDINL 207
Query: 144 VIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198
+IIDSI+ H R F + ++ +A L+ LAKK+S+A++ N +++
Sbjct: 208 LIIDSISHHMRVELQSSSFKESHANRHYINELAEHLLFLAKKYSVAIVVAN-----QVSD 262
Query: 199 SCLTCLRDSGSRKAVAAAAAQLGFVL 224
L DS S + ++ Q+G+++
Sbjct: 263 KILLTSTDSFSHE-ISDYDYQMGWIV 287
>gi|448578852|ref|ZP_21644228.1| DNA repair and recombination protein RadA [Haloferax larsenii JCM
13917]
gi|445725435|gb|ELZ77059.1| DNA repair and recombination protein RadA [Haloferax larsenii JCM
13917]
Length = 343
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGNSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V + LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDDVLEATLEDREIEGSVDDEETMQALVDDVLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
+H+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGDHEDTDWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6]
Length = 315
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 57/215 (26%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDI----SRGTQTAWDMLQ-------- 47
M++ +LP + KL AG SL +I AS +++ G TA ++
Sbjct: 1 MDLEELPGVGPAIAEKLREAGLNSLEAIAVASPAELVATAEIGESTAAKIINAARAAADI 60
Query: 48 ----------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E ++S+ ++TT D +LGGG+ + +TE G G GKTQ+ QLAVN
Sbjct: 61 GGFVTGEKILERRQSVGKLTTGSKSFDELLGGGLETQAMTEFYGEFGSGKTQIAHQLAVN 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------QSAVINYLD---------KFVSEH---- 138
VQ+P E GGL G AI + F E + A ++Y D + S H
Sbjct: 121 VQLPPEKGGLNGSAIMVDTENTFRPERIKDMAEGAELDYEDVLKNIHVARAYNSNHQILL 180
Query: 139 ---------------KDVKVVIIDSIAFHFRHGFV 158
K V+++IIDS HFR +V
Sbjct: 181 VEKAKEIAEDLKDTEKPVRLMIIDSATAHFRSEYV 215
>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Methanoregula boonei
6A8]
gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
6A8]
Length = 325
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 66/242 (27%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + + KL AGY S+ SI +AS +++S T+
Sbjct: 6 LEIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITEISESTAKKIIKAARESADI 65
Query: 41 ----TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
T D+ ++ +E + +++ +LD ++GGG+ + +TE+ G G GK+Q+ Q+AV
Sbjct: 66 GSFRTGKDIFEQRKE-IRKLSFRVPELDALMGGGLETQAITEMYGEFGSGKSQVVHQMAV 124
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVINYLDKF------VSE 137
NVQ+P E GG+ G IYI F E+ +LD S+
Sbjct: 125 NVQLPEEQGGMNGSVIYIDTENTFRPERIEQMVAGLGIDDIPDTQEFLDNIHIARAHTSD 184
Query: 138 H-------------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
H K VK+ IIDS+ HFR + LA R + L+ +L
Sbjct: 185 HQMLLVENSRDLANELKGSEKPVKLFIIDSLTAHFRSEYAGRGTLAARQQKLNRHMHELF 244
Query: 176 NL 177
L
Sbjct: 245 KL 246
>gi|154344200|ref|XP_001568044.1| putative recombinase rad51 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065378|emb|CAM40808.1| putative recombinase rad51 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 684
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 15/119 (12%)
Query: 38 GTQTAWDMLQEEQESLAR-----ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
G +T ++ E + AR +TT LD ILGGGI VTEI G PG+GKTQL +
Sbjct: 199 GCRTLRELYAEVEARQARGLPTHVTTFSRQLDGILGGGIPVDGVTEISGPPGVGKTQLLM 258
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
QLAV+ +PVEFGG+G G CL TE S V+ L++ + V ++ +I F
Sbjct: 259 QLAVSCAMPVEFGGMG------GACLFVDTEGSFVVERLEQMAT----AAVSLVRTILF 307
>gi|448607276|ref|ZP_21659421.1| DNA repair and recombination protein RadA [Haloferax sulfurifontis
ATCC BAA-897]
gi|448622332|ref|ZP_21669026.1| DNA repair and recombination protein RadA [Haloferax denitrificans
ATCC 35960]
gi|445738288|gb|ELZ89813.1| DNA repair and recombination protein RadA [Haloferax sulfurifontis
ATCC BAA-897]
gi|445754414|gb|EMA05819.1| DNA repair and recombination protein RadA [Haloferax denitrificans
ATCC 35960]
Length = 343
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLTDTGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E Q+ V + LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDDVLEATLEDRGIEGSVDDEETMQALVDDVLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|378755179|gb|EHY65206.1| DNA repair protein [Nematocida sp. 1 ERTm2]
Length = 338
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 40/219 (18%)
Query: 8 ISATQRGKLIS-AGY--TSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLD 64
++ T R KL++ G+ T + I ++ + G QTA D++ +++ + ITT ++LD
Sbjct: 50 VAFTPRKKLLNIRGFAETKVDRIIKEATKHVELGFQTA-DIIHQKRLQMKMITTGSSELD 108
Query: 65 NILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+LGGGI +TE+ G GKTQ+ LAV Q+P E GG GKAIYI F E+
Sbjct: 109 KLLGGGIETGSITELFGEFRTGKTQICHMLAVTCQLPTEMGGCNGKAIYIDTESTFRAER 168
Query: 125 SAVINYLDKFVSEHKDV-------------------------------KVVIIDSIAFHF 153
+I ++ + DV +++I+DSI ++
Sbjct: 169 --LIEIAKRYELDPTDVLSKVCVARAYNVDHQLELVKMAGGLMASGEYRLLIVDSIIANY 226
Query: 154 RHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
R F +L+ R LS LM LA ++++A++ N
Sbjct: 227 RTDFSGRGELSARQMHLSTYLRSLMQLADEYNVAVVITN 265
>gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus
NA1]
gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1]
Length = 353
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 98/234 (41%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY S+ +I AS ++ GT D E++ +
Sbjct: 54 KLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMEKRRT 113
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +I+T LD ++GGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 114 IGKISTGSKSLDKLVGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLQGSVI 173
Query: 113 YIGKCLGFYTE---QSAVINYLDK------------FVSEH------------------- 138
+I F E Q A LD F S H
Sbjct: 174 WIDTENTFRPERIRQIAENRGLDPEEVLKNIYVARAFNSNHQMLLVERAEEIIKEKAETE 233
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK+++IDS+ HFR +V LA R + L+ L +A + +A+ N
Sbjct: 234 RPVKLIVIDSLMAHFRSEYVGRGTLAERQQKLAKHLADLHRIADLYDIAVFVTN 287
>gi|4322492|gb|AAD16062.1| recombination/repair protein RadA [Halobacterium salinarum]
Length = 353
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 83/255 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL +G+ + + A+S+++S G TA D++Q E +E
Sbjct: 29 KLRDSGFDAFQILTVANSAELSNTADIGESTAADVIQAAREAADVGGFETGATVLEPREQ 88
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T + ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+G L G+A+
Sbjct: 89 IGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGALHGRAV 148
Query: 113 YIGKCLGFYTE--------------QSA-------------------VINYLDK------ 133
+I F E Q+A V +LDK
Sbjct: 149 FIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKG 208
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
SEH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 209 FNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHL 268
Query: 172 LKLMNLAKKFSLALL 186
L + ++ A+L
Sbjct: 269 HDLEPVGDLYNAAVL 283
>gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada)
gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada)
gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada)
gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada)
gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada)
gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada)
gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSD------ISRGT-----QTAW-----------DMLQEEQES 52
KL AGY +L +I AS + IS GT Q A D +++ +
Sbjct: 50 KLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFXRADEYLKKRAT 109
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVXVQLPPEEGGLNGSVI 169
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 170 WIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTD 229
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283
>gi|170030485|ref|XP_001843119.1| RAD51C protein [Culex quinquefasciatus]
gi|167867360|gb|EDS30743.1| RAD51C protein [Culex quinquefasciatus]
Length = 274
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 53/206 (25%)
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
T+T D+LQ+E L I T C DLD+ +G G+ +TE G PG GKTQ+ +QL VN
Sbjct: 3 TKTCADLLQQEAR-LPGIITFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQI-LQLCVN 60
Query: 98 VQIPVEFGGLGGKAIYIGKCLGF---------------------------------YTEQ 124
+P E GGLGGK++Y+ GF +T +
Sbjct: 61 ANLPKELGGLGGKSLYLDTNFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAE 120
Query: 125 SAV-----------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167
S + I+ L++ + + +++V+IDS +F R + R R+
Sbjct: 121 SVMESVLYNHVHVCNDLNKSIDTLERLLKLGEKIRLVVIDSYSFLIRCNIENTLERIRID 180
Query: 168 SGIALKLMNLAKKFSLALLEPNLATT 193
+ +L LA++F A++ N TT
Sbjct: 181 HTVLNRLQILAQQFKFAIVLTNDVTT 206
>gi|226823355|ref|NP_001152813.1| RAD51 homolog C [Nasonia vitripennis]
Length = 314
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 36/174 (20%)
Query: 31 SSSDISRGTQTA----WDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
S SDI + Q + D+ Q E + I+ C++L+ LGGGI CR +TE+ GVP G
Sbjct: 43 SRSDIEKQLQPSQELGLDIWQRETQQ-EHISLCCSELEAALGGGIQCRVITELSGVPFSG 101
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYI----GKCLGFYTEQSAVINYLDKFVSEHKDVK 142
KTQ+ +QL ++VQ+ +GGL G+AIYI G C + + ++ L+K HKD+
Sbjct: 102 KTQICMQLCISVQLNKCYGGLDGRAIYIDTRSGTCASRFKD---IVRGLNK---SHKDLN 155
Query: 143 ---------------------VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM 175
V IIDS+ F + + +R ++ +++ ++
Sbjct: 156 LNADEVLKCIEILSPNSVEEFVQIIDSLKFKMKSNKDEKKVRLIIVDSLSMPIL 209
>gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM
3638]
gi|397652424|ref|YP_006493005.1| DNA repair and recombination protein RadA [Pyrococcus furiosus
COM1]
gi|13878669|sp|O74036.1|RADA_PYRFU RecName: Full=DNA repair and recombination protein RadA
gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638]
gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638]
gi|393190015|gb|AFN04713.1| DNA repair and recombination protein RadA [Pyrococcus furiosus
COM1]
Length = 349
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSD------ISRGT-----QTAW-----------DMLQEEQES 52
KL AGY +L +I AS + IS GT Q A D +++ +
Sbjct: 50 KLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT 109
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 169
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 170 WIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 229
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283
>gi|269986696|gb|EEZ92976.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 345
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 55/239 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEEQE----- 51
++ LP + +T K+ +AGY + ++ +A+ ++ G TA ++ E +E
Sbjct: 30 DIKDLPGVGSTIASKIRNAGYQDVIALATANPLVLTEACGIGEPTARKIVAEAREASKMN 89
Query: 52 ------------SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
S+ RI+TS L+ +LGGG+ + +TE G G GK+QL QLAV+VQ
Sbjct: 90 FMSGLEFEDKRKSVQRISTSSEALNILLGGGVETQSITECYGEYGSGKSQLAFQLAVDVQ 149
Query: 100 IPVEFGGLGGKAIYI---GKCLGFYTEQSAVINYLDK------------FVSEHK----- 139
+P+E GGL G AI+I G EQ A + LD + S+H+
Sbjct: 150 LPLEKGGLEGHAIWIDTEGTFRPSRIEQLAAVKGLDPKQALQNIKIGRAYSSDHQVLLVD 209
Query: 140 ----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+K++++DS+ FR +V L R + ++ + L LA +F++A+
Sbjct: 210 KVPELINADPKIKLIVVDSMMALFRAEYVGRGTLVDRQQKVNVVLHNLQRLADRFNVAV 268
>gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula
palustris E1-9c]
gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula
palustris E1-9c]
Length = 327
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 65/218 (29%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+E+ LP + T KL AG+ ++ SI +AS ++++
Sbjct: 6 LEIEDLPGVGPTTAEKLRDAGFLTVESIATASPTELAEAAEIGEASAKKIIKAAREIADI 65
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+ E+++++ ++ T D D +LGGG+ + +TE+ G G GK+Q+ Q+AV
Sbjct: 66 GGFKTGQDVF-EQRKNVRKLKTFVPDFDELLGGGVETQAITEVYGEFGSGKSQIVHQMAV 124
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTE--------------------------------- 123
N Q+P GGL G AIYI F E
Sbjct: 125 NAQLPESVGGLNGSAIYIDTENTFRPERIEQMVAGLDFPELELPSFEEFLNNIHVARAHT 184
Query: 124 ---QSAVINYLDKFVSEHKD----VKVVIIDSIAFHFR 154
Q +I+ + +E K+ VK+ IIDS+ HFR
Sbjct: 185 SDHQMLLIDTARELAAELKNSDHPVKIFIIDSLTAHFR 222
>gi|354472143|ref|XP_003498300.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cricetulus
griseus]
Length = 387
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 43/197 (21%)
Query: 40 QTAWD--MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA+D M + + S A ++T+ + LD L GG+ C +TEI G PG GKTQ I ++V
Sbjct: 65 QTAYDIKMRRSAELSPAFLSTTLSALDKALHGGVACGSLTEITGPPGCGKTQFCIMMSVL 124
Query: 98 VQIPVEFGGLGGKAIYIGK-----------------CLGFYTEQ---------------- 124
+P GGL G +YI L F TE+
Sbjct: 125 ATLPTNMGGLEGTVVYIDTESAFTAERLVEIAESRFPLYFNTEEKLLLMSSKVHLHRELS 184
Query: 125 -SAVINYLDKFVSE--HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMN 176
AV+ L+ E K VK+VI+DSIA R F ++ R + L+ A L
Sbjct: 185 CEAVLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGNIKERNKFLAKQASLLKY 244
Query: 177 LAKKFSLALLEPNLATT 193
LA++FSL ++ N TT
Sbjct: 245 LAEEFSLPVILTNQITT 261
>gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus
barophilus MP]
gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus
barophilus MP]
Length = 355
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY SL +I AS ++ GT D + +++
Sbjct: 56 KLREAGYDSLEAIAVASPIELKEIAGISEGAALKIIQAAREAANIGTFIRADEYFQRRQT 115
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQ+ LAV VQ+P E GGL G I
Sbjct: 116 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQIAHTLAVMVQLPPEEGGLNGSVI 175
Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEH---- 138
+I F E Q ++ ++ + E
Sbjct: 176 WIDTENTFRPERIRQIAENRGLDPDEVLKNIYVARAYNTNHQMLLVEKAEEIIKEKLNTD 235
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++++DS+ HFR +V LA R + L L LA + +A+ N
Sbjct: 236 RPVKLMVVDSLTSHFRSEYVGRGALAERQQKLGKHLADLHRLANLYDIAIFVTN 289
>gi|307171500|gb|EFN63341.1| DNA-repair protein XRCC3 [Camponotus floridanus]
Length = 253
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
+TT C+ LD IL GGI CR +T+I G G GKTQL +QL ++VQ+PV GGLG AIYI
Sbjct: 17 LTTGCSKLDIILKGGIPCRGITQIYGAAGTGKTQLALQLCLSVQLPVTAGGLGAGAIYIS 76
Query: 116 KCLGFYTEQ 124
F +E+
Sbjct: 77 TETAFPSER 85
>gi|343475765|emb|CCD12932.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 520
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 32 SSDISRGTQTAWDMLQ-EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
S D++ ++ D+L+ E L +T+ C LD +LGGG VTE+ G PG+GKTQL
Sbjct: 90 SCDVAPTIRSLRDLLELGEATELESVTSLCRSLDVLLGGGPRVGAVTELCGPPGVGKTQL 149
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDVKV 143
+QLAVN +P E GGL G ++I F +E+ A +++++K VS + V +
Sbjct: 150 SMQLAVNCLLPKELGGLDGGCLFIDTEGSFLSERFCEIAQAAVSHVEKIVSHRESVGI 207
>gi|341582518|ref|YP_004763010.1| DNA repair and recombination protein RadA [Thermococcus sp. 4557]
gi|340810176|gb|AEK73333.1| DNA repair and recombination protein RadA [Thermococcus sp. 4557]
Length = 354
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 97/234 (41%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY S+ +I AS ++ GT D E + +
Sbjct: 55 KLREAGYDSIEAIAVASPMELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMERRST 114
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD ++GGG+ + +TE+ G G GKTQL LAV VQ+P E GGL G +
Sbjct: 115 IGRISTGSKSLDKLVGGGVETQAITEVFGEFGSGKTQLAHTLAVMVQLPEEEGGLHGSVV 174
Query: 113 YIGKCLGFYTE---QSAVINYLDK------------FVSEH------------------- 138
+I F E Q A LD F S H
Sbjct: 175 WIDTENTFRPERIRQIAEARGLDPDETLKNIYVARAFNSNHQMLLVERAEEIIKEKAETD 234
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++++DS+ HFR +V LA R + L+ L +A + +A+ N
Sbjct: 235 RPVKLLVVDSLMAHFRSEYVGRGTLAERQQKLAKHLADLHRIADLYDIAVFVTN 288
>gi|448611269|ref|ZP_21661903.1| DNA repair and recombination protein RadA [Haloferax mucosum ATCC
BAA-1512]
gi|445743701|gb|ELZ95182.1| DNA repair and recombination protein RadA [Haloferax mucosum ATCC
BAA-1512]
Length = 343
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 108/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINVARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTEQ---------------------------------SAVINYLDK------ 133
+I F E+ + V + LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDDVLEATLDDRGIEGSIDDEETMTALVDDVLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
+H+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGDHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|410671201|ref|YP_006923572.1| DNA repair and recombination protein RadA [Methanolobus
psychrophilus R15]
gi|409170329|gb|AFV24204.1| DNA repair and recombination protein RadA [Methanolobus
psychrophilus R15]
Length = 325
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL+ AG+T++ +I +S ++++ G TA D++ E ++
Sbjct: 19 KLMDAGFTTVEAIAVSSPAELATAADIGESTAAKIILAARQSADIGGFETGDVVMERRKH 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++T C + + ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+P E GGL G I
Sbjct: 79 VGKLSTGCVEFNEMMGGGIETQSITEMYGEFGSGKTQVAHQLAVNVQLPRELGGLDGSVI 138
Query: 113 YIGKCLGFYTE--QSAVINYLDKFVSE--HKDVKVVIIDSIAFHFRHG--FVDLALRTRV 166
I F E Q V +K+ E H++ I + AF+ H VD A+
Sbjct: 139 IIDTENTFRPERIQQMVEGLSEKYGQEYDHEEFLKNIHVARAFNSNHQILLVDSAME--- 195
Query: 167 LSGIALKLMNLAKKFSLALLE 187
+A +L N K L +++
Sbjct: 196 ---LANELKNTEKPVRLLIVD 213
>gi|432947346|ref|XP_004084000.1| PREDICTED: DNA repair protein XRCC3-like [Oryzias latipes]
Length = 342
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
ES R+ SC LD +L GG+ +TE+ G G GKTQL +Q++++VQ PVE GGLGG
Sbjct: 77 ESGLRLGVSCPVLDGLLRGGLPVGGITELSGQSGAGKTQLALQISLSVQYPVEHGGLGGG 136
Query: 111 AIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLA 161
A+YI C TE S I L + +SE +++ + S+ R H +++ A
Sbjct: 137 ALYI--C----TEDSFPIRRLQQMISEQANLRSEVPSSLIRGLRFSDHVYIEHA 184
>gi|448417201|ref|ZP_21579219.1| DNA repair and recombination protein RadA [Halosarcina pallida JCM
14848]
gi|445678424|gb|ELZ30917.1| DNA repair and recombination protein RadA [Halosarcina pallida JCM
14848]
Length = 343
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSAS--------------SSDISRGTQTAWD--------MLQEEQES 52
KL+ AG+ S SI AS SSDI + + A D M+ E ++
Sbjct: 19 KLVEAGFESYQSIAVASPSELSNTADVGESTSSDIIKAARKAADIGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ Q+AVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIPEVDELLGGGLETQSITEVYGEFGSGKSQVTHQMAVNVQLPPEHGGLGGSCI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|387597245|gb|EIJ94865.1| DNA repair protein RAD51 [Nematocida parisii ERTm1]
Length = 341
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSS----------------------ICSASSSDISRGTQTAWDM 45
ISA GKL+ G+ S+ S I ++ + G QTA ++
Sbjct: 34 ISAADIGKLVECGFRSVESVAFSPRKKLLSIRGFAEAKVDKIVKEATKHVELGFQTA-EV 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ +++ + ITT ++LD +LGGGI +TE+ G GKTQL LAV Q+P E G
Sbjct: 93 VHQKRLQMKMITTGSSELDKLLGGGIETGSITELFGEFRTGKTQLCHMLAVTCQLPTELG 152
Query: 106 GLGGKAIYIGKCLGFYTEQSAVI---NYLDKFV------------SEHK----------- 139
G GKA+YI F +E+ I LD V +H+
Sbjct: 153 GCNGKAVYIDTEATFRSERLIEIAKRYQLDPNVVLSNVCVARAYNVDHQIELVKQAGSLM 212
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ ++ I+DSI H+R F +L+ R L LM LA ++++A++ N
Sbjct: 213 ASGEYRLCIVDSIIAHYRTDFSGRGELSARQMHLGVYLRSLMQLADEYNVAIVITN 268
>gi|327280368|ref|XP_003224924.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Anolis
carolinensis]
Length = 395
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQEE--QESLARITTSCADLDNILGGGIG 72
K+ Y + + + S + QT ++M ++ S A + T+ DLD IL GGI
Sbjct: 40 KVTGQNYWKVQKLLNTVSQFCAPRMQTVYEMKRKRTMNPSTAFLPTTLEDLDKILHGGIA 99
Query: 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---N 129
C +TEI G G GKTQ I +++ +P GG G IYI F E+ I
Sbjct: 100 CGSITEITGPSGCGKTQFCIMMSLLATLPTSMGGFSGAVIYIDTESAFSAERLIEIAQHR 159
Query: 130 YLDKFVSEH---------------------------------KDVKVVIIDSIAFHFRHG 156
+ F SE K+VK+VI+DSIA R
Sbjct: 160 FPHYFASEEKLISMSSSIYLYRELTCDGVLKRIESLEEEIISKNVKLVILDSIASVVRKE 219
Query: 157 FV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
F +L RT +L+ A L LA++FS+ ++ N TT
Sbjct: 220 FDTKLQGNLRERTNLLTKEASILKYLAEEFSIPVILTNQITT 261
>gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
DSM 14429]
gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
DSM 14429]
Length = 388
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 55/218 (25%)
Query: 15 KLISAGYTSLSSICSASSSDIS-------RGTQ---------------TAWDMLQEEQES 52
KL AGY + + AS +++ R Q TA++ L E++
Sbjct: 95 KLREAGYNTARDVAFASVKELAEILGSEDRAKQIIAAAQKLIGLTPFITAYE-LYEKRRG 153
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL QL+V VQ+P + GGL KA+
Sbjct: 154 IRRISTGVKSLDELLGGGIETKAITELVGEFGSGKTQLCHQLSVMVQLPEDKGGLKAKAL 213
Query: 113 YIGKCLGFYTE-------------QSAVINYL----------------DKFVSEHKDVKV 143
Y+ F E Q A+ N L K + E +++ +
Sbjct: 214 YVDTENTFRPERIMQMAKYRGLDPQEALKNILYARAYNSDHQMMIIEESKKIIEKENIGL 273
Query: 144 VIIDSIAFHFRH---GFVDLALRTRVLSGIALKLMNLA 178
++IDS+ HFR G +LA R + L+ +L+ +A
Sbjct: 274 IVIDSLVAHFRSEYPGRENLAERQQKLNHHIAQLLRIA 311
>gi|313124902|ref|YP_004035166.1| DNA repair and recombination protein rada [Halogeometricum
borinquense DSM 11551]
gi|448287310|ref|ZP_21478523.1| DNA repair and recombination protein RadA [Halogeometricum
borinquense DSM 11551]
gi|312291267|gb|ADQ65727.1| DNA repair and recombination protein RadA [Halogeometricum
borinquense DSM 11551]
gi|445572518|gb|ELY27056.1| DNA repair and recombination protein RadA [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S +I AS S++S G T+ D++ E +E
Sbjct: 19 KLTDAGFESYQAIAVASPSELSNTADVGESTSSDIINAAREAADIGGFETGSAVLERREQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ +++D++LGGG+ + +TE+ G G GK+Q+ Q+AVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWGISEVDDLLGGGLETQSITEVYGEFGAGKSQVTHQMAVNVQLPPEHGGLGGSCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
++ F E + + ++LDK
Sbjct: 139 FVDSEDTFRPERIDDMVRGLDDEIIQATMDEREIEGSPDDEAAMEELLNDFLDKIHVAKA 198
Query: 134 FVSEHK-------------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
F S H+ V+++ +DS+ HFR +V LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELARDHEEDEFPVRLLCVDSLTAHFRAEYVGRGQLAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + ++ A+L N
Sbjct: 259 HDLMRIGDLYNTAVLVTN 276
>gi|452209062|ref|YP_007489176.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Tuc01]
gi|34395788|sp|Q8PZN5.2|RADA_METMA RecName: Full=DNA repair and recombination protein RadA
gi|452098964|gb|AGF95904.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Tuc01]
Length = 325
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 62/206 (30%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTA------------------WDMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+ E GGLGG I
Sbjct: 79 VGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVI 138
Query: 113 YIGKCLGFYTEQ-SAVINYLDK--------------------FVSEH------------- 138
I F E+ + ++N L + + S H
Sbjct: 139 IIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLAN 198
Query: 139 ------KDVKVVIIDSIAFHFRHGFV 158
K V+++I+DS+ HFR +V
Sbjct: 199 ELKEMGKPVRLLIVDSLMAHFRAEYV 224
>gi|354609768|ref|ZP_09027724.1| DNA repair and recombination protein radA [Halobacterium sp. DL1]
gi|353194588|gb|EHB60090.1| DNA repair and recombination protein radA [Halobacterium sp. DL1]
Length = 343
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ S S+ ASS +++ G TA D++Q E +E
Sbjct: 19 KLRENGFESFQSLAVASSGELANAADVGDSTAADVVQAAREAADVGGFETGATVLERREQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ + ++D +LGGG+ + +TE+ G G GK+Q+ QL+VN+Q+P E GGL G+A+
Sbjct: 79 IGKLSWNVPEIDEMLGGGVETQSITEVYGKFGAGKSQVTHQLSVNIQLPQEHGGLHGRAV 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|257052349|ref|YP_003130182.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
DSM 12940]
gi|256691112|gb|ACV11449.1| DNA repair and recombination protein RadA [Halorhabdus utahensis
DSM 12940]
Length = 348
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 30/160 (18%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLTENGYDSYQGIAVASPGELSNTADVGESSAADIIQAAREAADIGGFESGAEVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G +I
Sbjct: 80 IGKLTWGVEEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSSI 139
Query: 113 YIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152
+I F E+ +++ V +D VI D++ H
Sbjct: 140 FIDSEDTFRPER------IEQMVEGLED--DVIADTMVLH 171
>gi|15242137|ref|NP_200554.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|30696870|ref|NP_851202.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|55583983|sp|Q9FKM5.1|XRCC3_ARATH RecName: Full=DNA repair protein XRCC3 homolog; AltName: Full=X-ray
repair cross-complementing protein 3 homolog;
Short=AtXRCC3
gi|9758307|dbj|BAB08781.1| unnamed protein product [Arabidopsis thaliana]
gi|15425729|dbj|BAB64342.1| AtXRCC3alpha [Arabidopsis thaliana]
gi|16444953|dbj|BAB70684.1| AtXRCC3beta [Arabidopsis thaliana]
gi|19571703|emb|CAD27641.1| Rad51B protein [Arabidopsis thaliana]
gi|19571705|emb|CAD27642.1| Rad51B protein [Arabidopsis thaliana]
gi|20384750|gb|AAK54457.1| DNA repair protein XRCC3 [Arabidopsis thaliana]
gi|109946499|gb|ABG48428.1| At5g57450 [Arabidopsis thaliana]
gi|332009520|gb|AED96903.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|332009521|gb|AED96904.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
Length = 304
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
++TT C LD L GGI C +TEI G GKTQL +QL++ Q+P+ GGL G ++Y+
Sbjct: 20 KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79
Query: 115 GKCLGF-------------YTEQSAVINY-------------------------LDKFVS 136
F + S NY +D FV
Sbjct: 80 HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139
Query: 137 EHK---DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K +K++++DS+A FR F DL R+ + I+ KL LA KF LA++ N
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199
Query: 190 LAT 192
T
Sbjct: 200 QVT 202
>gi|300176270|emb|CBK23581.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCR 74
+L Y ++ +C S I QTA ++LQ++Q A +TT C +D L GGI
Sbjct: 157 RLQEQCYCTIWHVCFKEMSAILEQCQTAEELLQQQQ--TAFLTTGCRSIDKCLKGGIPLH 214
Query: 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKF 134
+TEI G GK+QL IQLAVN + + G+ GKA+YI F T++ A I+ + F
Sbjct: 215 SITEITGESSSGKSQLAIQLAVNCILSEKDRGVNGKALYIDTESSFSTQRLADIS--NAF 272
Query: 135 VSEHKDVKV 143
S H + +
Sbjct: 273 CSRHPEFSI 281
>gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Go1]
gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1]
Length = 367
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 62/206 (30%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 61 KLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDLVLERRKL 120
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+ E GGLGG I
Sbjct: 121 VGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVI 180
Query: 113 YIGKCLGFYTEQ-SAVINYLDK--------------------FVSEH------------- 138
I F E+ + ++N L + + S H
Sbjct: 181 IIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLAN 240
Query: 139 ------KDVKVVIIDSIAFHFRHGFV 158
K V+++I+DS+ HFR +V
Sbjct: 241 ELKEMGKPVRLLIVDSLMAHFRAEYV 266
>gi|290559566|gb|EFD92895.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 348
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 55/239 (23%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDML---------- 46
++ LP + +T K+ SAGY + S+ +A+ + G TA ++
Sbjct: 33 DIKDLPGVGSTIASKIKSAGYQDIISLATANPMVLVEACGIGEPTAKKIVAEARDASGMN 92
Query: 47 -------QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+++++S+ RI+T + +LGGG+ + +TE G G GK+Q+ QLAV+VQ
Sbjct: 93 FMSGLEFEDKRKSVQRISTGSEAFNILLGGGVETQAITECYGEYGSGKSQMAFQLAVDVQ 152
Query: 100 IPVEFGGLGGKAIYIGKCLGFYT------------------------------EQSAVIN 129
+PVE GGL G AI+I F Q ++N
Sbjct: 153 LPVEKGGLDGHAIWIDTEGTFRPSRIEQLAASKGLDPKQALQNIKIGRAYSSDHQVLLVN 212
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ + V+ +K++++DS+ FR +V LA R + ++ + L LA +F++A+
Sbjct: 213 KVPELVNADPKIKLIVVDSMMALFRAEYVGRGTLADRQQKVNVVLHTLQRLADRFNIAV 271
>gi|125775489|ref|XP_001358960.1| GA17378 [Drosophila pseudoobscura pseudoobscura]
gi|54638701|gb|EAL28103.1| GA17378 [Drosophila pseudoobscura pseudoobscura]
Length = 348
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 37/168 (22%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG---- 109
+R++ C+ LD GGG+ R +TEI G G+GKTQL +QLA+ VQ+PV+ GGLG
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITEICGAAGVGKTQLLLQLALCVQLPVKLGGLGRGVAY 145
Query: 110 -------------------KAIYIGKCLGF---------YTEQ---SAVINYLDKFVSEH 138
+A Y + L F Y Q + V N L + + +H
Sbjct: 146 ICTEDAFPARRLLEMSKALEARYPQEQLNFLGNIFVEHQYESQPLINCVSNRLPRLLQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
+ ++IIDS+A FR + D R R + +A L++ A K++ A++
Sbjct: 206 -SIGLIIIDSVAAIFRL-YTDFLERARQMRRLADALISYADKYNCAVV 251
>gi|449502449|ref|XP_002199421.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Taeniopygia guttata]
Length = 400
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 92/198 (46%), Gaps = 43/198 (21%)
Query: 40 QTAWDMLQEE--QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA++M ++ S A ++T+ LD +L GG+ C +TEI G PG GKTQ I L+V
Sbjct: 65 QTAYEMKLKKSVNPSSAFLSTTLHGLDRVLHGGVPCGSLTEITGPPGCGKTQFCIMLSVL 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ---------SAVINYLDKFV----SEH------ 138
+PV GGL G IYI F E+ A + +K + S H
Sbjct: 125 ATLPVSMGGLDGAVIYIDTESAFSAERLIEIAANRFPAYFDSDEKLLCMTRSIHLYRELT 184
Query: 139 -----------------KDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMN 176
K VK++IIDS+A R F +LA R+ L+ A L
Sbjct: 185 CCSVLKRIMSLEEEVILKKVKLIIIDSVASVVRKEFDTKLQGNLAERSNFLTRGASVLKY 244
Query: 177 LAKKFSLALLEPNLATTA 194
LA++FS+ ++ N TT+
Sbjct: 245 LAEEFSIPVILTNQITTS 262
>gi|409729967|ref|ZP_11271578.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
gi|448722272|ref|ZP_21704810.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
gi|445789983|gb|EMA40656.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
Length = 332
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL+ +G+ S I AS ++S G TA D++ E +E
Sbjct: 8 KLVESGFDSYQGIAVASPGELSNTADIGESTAADIINAARDAADIGGFETGANVLERREQ 67
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E+GGL G AI
Sbjct: 68 IGKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPSEYGGLEGSAI 127
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 128 FIDSEDTFRPER 139
>gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
DSM 5219]
gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
DSM 5219]
Length = 325
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 40/179 (22%)
Query: 20 GYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEI 79
G ++ + I SA+ S G D + + + + ++ T C + D ++GGGI + +TE+
Sbjct: 46 GESTAAKIISAARSAADIGGFETGDFVMQRRMEVGKLRTGCEEFDELMGGGIETQSITEM 105
Query: 80 GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------- 124
G G GKTQ+ QLAVN Q+P E GGL G I I F E+
Sbjct: 106 YGEFGSGKTQIAHQLAVNTQLPKEMGGLDGSVIIIDTENTFRPERIEHMVAGLSHKFEQD 165
Query: 125 -------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV 158
A +K + K V++VI+DS+ HFR +V
Sbjct: 166 FDPAEFLKNIHVARAYNSNHQILLVDAATEMANKLKNTDKPVRLVIVDSLTAHFRAEYV 224
>gi|353236565|emb|CCA68557.1| related to DMC1-Meiosis-specific protein [Piriformospora indica DSM
11827]
Length = 355
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ E+++ + I+T +D ILGGGI + ++E+ G GKTQL ++V Q+P + G
Sbjct: 108 VSEKRKRVTSISTGSKAVDAILGGGIQTQSISEVYGEFRTGKTQLAHTMSVLAQLPADMG 167
Query: 106 GLGGKAIYIGKCLGFYTE-------------QSAVIN--YLDKFVSEH------------ 138
G GGK YI F + ++A+ N Y F SEH
Sbjct: 168 GGGGKVAYIDTEGTFRPDRIRAIADRFGVDGETALSNILYARAFNSEHQMELINEATTRF 227
Query: 139 ---KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD K++I+DSI FR F +L+ R + L+ + KL +A++++LA+L N
Sbjct: 228 AEEKDYKLMIVDSIMALFRTDFSGRGELSERQQKLASMLSKLSKIAEEYNLAILLTN 284
>gi|448638833|ref|ZP_21676503.1| DNA repair and recombination protein RadA [Haloarcula sinaiiensis
ATCC 33800]
gi|445763165|gb|EMA14368.1| DNA repair and recombination protein RadA [Haloarcula sinaiiensis
ATCC 33800]
Length = 349
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G AI
Sbjct: 80 IGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui
ATCC 43049]
gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui
ATCC 43049]
Length = 351
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 22 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 81
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G AI
Sbjct: 82 IGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSAI 141
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 142 FVDSEDTFRPER 153
>gi|448663902|ref|ZP_21683888.1| DNA repair and recombination protein RadA [Haloarcula amylolytica
JCM 13557]
gi|445775218|gb|EMA26230.1| DNA repair and recombination protein RadA [Haloarcula amylolytica
JCM 13557]
Length = 349
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL GY S I AS ++S G +A D++Q
Sbjct: 6 DLEELPGVGPATAEKLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIG 65
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNV
Sbjct: 66 GFETGSTVLERREQIGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNV 125
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 126 QLPAEHGGLEGSAIFVDSEDTFRPER 151
>gi|448648823|ref|ZP_21679888.1| DNA repair and recombination protein RadA [Haloarcula californiae
ATCC 33799]
gi|445774567|gb|EMA25583.1| DNA repair and recombination protein RadA [Haloarcula californiae
ATCC 33799]
Length = 349
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G AI
Sbjct: 80 IGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|339243031|ref|XP_003377441.1| DNA repair protein RAD51 [Trichinella spiralis]
gi|316973755|gb|EFV57314.1| DNA repair protein RAD51 [Trichinella spiralis]
Length = 592
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 48/75 (64%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
QTA +L + E + I T C LDN LGGGI ++TE G GIGKTQL +QLAV+V
Sbjct: 92 QTAKTLLDRDVEDVQSIVTFCESLDNALGGGIQLGQMTECAGPSGIGKTQLCLQLAVDVC 151
Query: 100 IPVEFGGLGGKAIYI 114
IP GG+ G+ IYI
Sbjct: 152 IPKVLGGVDGEVIYI 166
>gi|198451235|ref|XP_001358289.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
gi|198131396|gb|EAL27427.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
Length = 254
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 42/201 (20%)
Query: 31 SSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQL 90
SS++I+ ++ D L+E Q +I T LD LGGGI R++TE+ G G GKT++
Sbjct: 7 SSNNINLFNKSCLDRLRERQSK--KIATGHKSLDRHLGGGISLRQITELVGNSGTGKTKM 64
Query: 91 GIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------------QSAV--------- 127
+QL +NVQIP GGL G A++I F+ + Q A
Sbjct: 65 CLQLCLNVQIPKTAGGLEGAALFIDTRQDFHPDRLQELARDLEKEYKQRAPDFQASKMLQ 124
Query: 128 -INYLD---------------KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171
++Y+ + + H ++KV++IDS+AF R D A R +L +
Sbjct: 125 NVHYVSCPNAVQLMATVLSSYRHLIAHPNIKVIVIDSLAFSLR-MLDDGAQRFELLLELV 183
Query: 172 LKLMNLAKKFSLALLEPNLAT 192
+ L ++ +A + N+ T
Sbjct: 184 ESMRQLLREHEVAWVVTNVLT 204
>gi|448303934|ref|ZP_21493880.1| DNA repair and recombination protein RadA [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592561|gb|ELY46748.1| DNA repair and recombination protein RadA [Natronorubrum
sulfidifaciens JCM 14089]
Length = 343
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ D+D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G AI
Sbjct: 79 IGKLSWHIDDVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGCAI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|448302155|ref|ZP_21492139.1| DNA repair and recombination protein RadA [Natronorubrum tibetense
GA33]
gi|445582151|gb|ELY36496.1| DNA repair and recombination protein RadA [Natronorubrum tibetense
GA33]
Length = 343
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLSEAGFESFQSLAVASPSELSNTADVGESTAADIVRAARDAADIGGFETGTTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G AI
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGSAI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|195055951|ref|XP_001994876.1| GH17480 [Drosophila grimshawi]
gi|193892639|gb|EDV91505.1| GH17480 [Drosophila grimshawi]
Length = 349
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 37/180 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG---- 109
+R+T C+ LD GGGI R +TEI G G+GK+Q+ +QL+++VQ+P GGLG
Sbjct: 86 SRLTFGCSSLDECTGGGISIRGITEICGASGVGKSQILLQLSISVQLPPRLGGLGKGVAF 145
Query: 110 -------------------KAIYIGKCLGF---------YTEQS---AVINYLDKFVSEH 138
+A Y + L F Y Q V N L + + EH
Sbjct: 146 ICTEDVFPSRRLLQISKAFEARYPEEQLNFLGNIFIEHQYESQPLLDCVKNRLSQLLQEH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198
+ ++IIDS+A FR + D R R + + L++ A K+ A++ N T + A+
Sbjct: 206 S-IGLIIIDSVAAIFRL-YTDFDDRARDMRRMVHALLSYADKYGCAVVCTNQMTASGQAD 263
>gi|159041684|ref|YP_001540936.1| DNA repair and recombination protein RadA [Caldivirga
maquilingensis IC-167]
gi|157920519|gb|ABW01946.1| DNA repair and recombination protein RadA [Caldivirga
maquilingensis IC-167]
Length = 358
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 32/171 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ I+T LD +LGGGI R +TE+ G G GKT QL+V VQ+P + GGL
Sbjct: 115 ERKRNVQYISTGVKALDELLGGGIETRAITELAGEFGSGKTNFCHQLSVMVQLPEDKGGL 174
Query: 108 GGKAIYIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK------------- 139
GKA++I F E + A+ N Y + S+H+
Sbjct: 175 KGKALFIDTENTFRPERIVQIAKYRGLDPKEALKNIFYARAYNSDHQMLIIDEAKKIIPK 234
Query: 140 -DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
++++++IDS+ HFR G +LA R + L+ +L+ LA ++ A++
Sbjct: 235 ENIRLIVIDSLVAHFRSEYPGRENLAERQQKLNHHIAQLLKLADIYNAAVV 285
>gi|397779635|ref|YP_006544108.1| DNA repair and recombination protein radA [Methanoculleus
bourgensis MS2]
gi|396938137|emb|CCJ35392.1| DNA repair and recombination protein radA [Methanoculleus
bourgensis MS2]
Length = 324
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 26/161 (16%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+++ LP + T KL AGY ++ SI +A++SD++
Sbjct: 4 IDLEDLPGVGPTTAEKLREAGYGTVESIATATTSDLAEAAEIGEGTAKKVILAARKMADI 63
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+L ++++ + ++ T + D ++GGG+ + +TE+ G G GK+QL Q+AV
Sbjct: 64 GGFKTGRDIL-DKRKDVKKLKTLVPEFDELVGGGLETQAITEVYGEFGSGKSQLVHQMAV 122
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVINYLDKFVS 136
NVQ+P E GGL G IY+ F E+ ++N L + V
Sbjct: 123 NVQLPEESGGLHGSVIYVDTENTFRPERIEQMVNGLPEDVD 163
>gi|433592935|ref|YP_007282431.1| DNA repair and recombination protein RadA [Natrinema pellirubrum
DSM 15624]
gi|448335381|ref|ZP_21524528.1| DNA repair and recombination protein RadA [Natrinema pellirubrum
DSM 15624]
gi|448381009|ref|ZP_21561366.1| DNA repair and recombination protein RadA [Haloterrigena
thermotolerans DSM 11522]
gi|433307715|gb|AGB33527.1| DNA repair and recombination protein RadA [Natrinema pellirubrum
DSM 15624]
gi|445617088|gb|ELY70690.1| DNA repair and recombination protein RadA [Natrinema pellirubrum
DSM 15624]
gi|445663665|gb|ELZ16408.1| DNA repair and recombination protein RadA [Haloterrigena
thermotolerans DSM 11522]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + ++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLRWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 125 QLPQEVGGLHGSAIFVDSEDTFRPER 150
>gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon]
gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon]
Length = 315
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 57/215 (26%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
M++ +LP + KL AG+ SL +I AS ++ T+
Sbjct: 1 MDLDELPGVGPAIAEKLREAGFNSLEAIAVASPMELVATTEIGEATASKIITAAREAADI 60
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
D + E + ++ ++TT LD+++GGG+ + +TE G G GKTQ+ QLAVN
Sbjct: 61 GGFETGDKILERRHNIGKLTTGSKSLDDLIGGGLETQALTEFYGEFGSGKTQIAHQLAVN 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------QSAVINYLD---------KFVSEH---- 138
VQ+P E GGL G AI I F + + A ++Y D + S H
Sbjct: 121 VQLPPEKGGLDGSAIIIDTENTFRPDRIKDMSEGAELDYNDILKNIHVARSYNSNHQILL 180
Query: 139 ---------------KDVKVVIIDSIAFHFRHGFV 158
K V+++IIDS FR +V
Sbjct: 181 VEKAGALAEELKATEKPVRLMIIDSATAQFRSEYV 215
>gi|335441210|ref|ZP_08561930.1| DNA repair and recombination protein RadA [Halorhabdus tiamatea
SARL4B]
gi|334888251|gb|EGM26552.1| DNA repair and recombination protein RadA [Halorhabdus tiamatea
SARL4B]
Length = 348
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 30/160 (18%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLTENGYDSYQGIAVASPGELSNTADVGESSAADIIQAAREAADIGGFESGAEVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G +I
Sbjct: 80 IGKLSWGVEEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSSI 139
Query: 113 YIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152
+I F E+ +++ V +D VI D++ H
Sbjct: 140 FIDSEDTFRPER------IEQMVEGLED--DVIADTMVLH 171
>gi|448337349|ref|ZP_21526428.1| DNA repair and recombination protein RadA [Natrinema pallidum DSM
3751]
gi|445625896|gb|ELY79249.1| DNA repair and recombination protein RadA [Natrinema pallidum DSM
3751]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D+++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSYQSLAVASPSELSNTADVGESTAADIVRAARSAADIG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 125 QLPQEVGGLHGSAIFMDSEDTFRPER 150
>gi|397772116|ref|YP_006539662.1| DNA repair and recombination protein RadA [Natrinema sp. J7-2]
gi|448342457|ref|ZP_21531408.1| DNA repair and recombination protein RadA [Natrinema gari JCM
14663]
gi|397681209|gb|AFO55586.1| DNA repair and recombination protein RadA [Natrinema sp. J7-2]
gi|445625834|gb|ELY79188.1| DNA repair and recombination protein RadA [Natrinema gari JCM
14663]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D+++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSYQSLAVASPSELSNTADVGESTAADIVRAARDAADIG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 125 QLPQEVGGLHGSAIFMDSEDTFRPER 150
>gi|448347008|ref|ZP_21535887.1| DNA repair and recombination protein RadA [Natrinema altunense JCM
12890]
gi|445631345|gb|ELY84577.1| DNA repair and recombination protein RadA [Natrinema altunense JCM
12890]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D+++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSYQSLAVASPSELSNTADVGESTAADIVRAARSAADIG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 125 QLPQEVGGLHGSAIFMDSEDTFRPER 150
>gi|448705059|ref|ZP_21700746.1| DNA repair and recombination protein RadA [Halobiforma
nitratireducens JCM 10879]
gi|445795962|gb|EMA46481.1| DNA repair and recombination protein RadA [Halobiforma
nitratireducens JCM 10879]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G A++I F E+
Sbjct: 125 QLPKEVGGLHGSAMFIDSEDTFRPER 150
>gi|448475881|ref|ZP_21603236.1| DNA repair and recombination protein RadA [Halorubrum aidingense
JCM 13560]
gi|445816099|gb|EMA66008.1| DNA repair and recombination protein RadA [Halorubrum aidingense
JCM 13560]
Length = 343
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 111/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSAADIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERREEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+P E GGL G I++ F E +
Sbjct: 125 QLPAEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPNNEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVGAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEEGEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELADRQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|366996885|ref|XP_003678205.1| hypothetical protein NCAS_0I01950 [Naumovozyma castellii CBS 4309]
gi|342304076|emb|CCC71863.1| hypothetical protein NCAS_0I01950 [Naumovozyma castellii CBS 4309]
Length = 453
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 39/183 (21%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
TT +D+ILGGGI + +TEI G GK+Q +QL+++VQ+P++ GGLGGK +YI
Sbjct: 86 HFTTGDLAIDDILGGGIFTKNITEIFGESSTGKSQFLMQLSLSVQLPLKMGGLGGKCVYI 145
Query: 115 --------GKCLGF------YTE------------------QSAVINYLDKFVSEHKD-- 140
+ G +TE Q ++N + E +
Sbjct: 146 TTEGDLPTQRIEGILSSRSEFTESGVSQDNIFTVSCNDLESQEHILNVQLPVLLERNNSA 205
Query: 141 VKVVIIDSIAFHFR----HGFVDLALRTR-VLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+K+VIIDSI+ H R G V A R + A +L++LA KFS+A++ N
Sbjct: 206 IKLVIIDSISHHMRVELQGGSVKEAQNNRSYVDQTAERLLDLANKFSVAIVVANQVGDKP 265
Query: 196 LAE 198
L E
Sbjct: 266 LQE 268
>gi|448315912|ref|ZP_21505550.1| DNA repair and recombination protein RadA [Natronococcus jeotgali
DSM 18795]
gi|445610258|gb|ELY64032.1| DNA repair and recombination protein RadA [Natronococcus jeotgali
DSM 18795]
Length = 343
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G T+ D+++ E +
Sbjct: 19 KLHEAGFDSFQSLAVASPSELSNTADVGESTSADIVRAARDAADVGGFETGSAVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G+A+
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGRAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|449701818|gb|EMD42564.1| DNA repair protein RAD51C,putative [Entamoeba histolytica KU27]
Length = 283
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 35/193 (18%)
Query: 39 TQTAWDMLQEEQESLAR-ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
T+T ++++E +E R I T ++D L GGI E+T+I G PG GK+QL +Q+A N
Sbjct: 22 TKTLKELVEEVKEKKVRNIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACN 81
Query: 98 VQIPVEFGGLGGKAIYIGK----------------CLGFYTEQSAVINYLDKF-VSEHKD 140
VQ+P E GGL ++IY C + + V L+K V + D
Sbjct: 82 VQLPEEIGGLNSESIYYDSYSQFCISRVQRMAECICASYPEYKLNVKEILEKIHVYQPHD 141
Query: 141 -----------------VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183
VKV+IIDSI ++ + +R L I L + K+ L
Sbjct: 142 IVSLCSSLLSINNKLNKVKVIIIDSIPTFYKKAMCNDTIRLAALHRIIQILSIYSNKYYL 201
Query: 184 ALLEPNLATTANL 196
+++ N TT +
Sbjct: 202 SVVIVNHLTTKKI 214
>gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
Length = 358
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 55/218 (25%)
Query: 15 KLISAGYTSLSSICSASSSDIS-------RGTQ---------------TAWDMLQEEQES 52
KL AGY + + AS +++ R Q TA++ L E++
Sbjct: 65 KLREAGYNTARDVAFASVKELADILGSEDRAKQIIAAAQKLIGLTPFITAYE-LYEKRRG 123
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL QL++ VQ+P + GGL KA+
Sbjct: 124 IRRISTGVKALDELLGGGIETKAITELVGEFGSGKTQLCHQLSIIVQLPEDRGGLKAKAL 183
Query: 113 YIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK--------------DVKV 143
Y+ F E Q A+ N Y + S+H+ ++ +
Sbjct: 184 YVDTENTFRPERIMQIAKYRGLDPQEALRNILYARAYNSDHQMMIIEESKKIIEKENIGL 243
Query: 144 VIIDSIAFHFRH---GFVDLALRTRVLSGIALKLMNLA 178
++IDS+ HFR G +LA R + L+ +L+ +A
Sbjct: 244 IVIDSLVAHFRSEYPGRENLAERQQKLNHHIAQLLRIA 281
>gi|195144506|ref|XP_002013237.1| GL23505 [Drosophila persimilis]
gi|194102180|gb|EDW24223.1| GL23505 [Drosophila persimilis]
Length = 348
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 37/168 (22%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG---- 109
+R++ C+ LD GGG+ R +TEI G G+GKTQL +QLA+ VQ+P++ GGLG
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITEICGAAGVGKTQLLLQLALCVQLPLKLGGLGRGVAY 145
Query: 110 -------------------KAIYIGKCLGF---------YTEQ---SAVINYLDKFVSEH 138
+A Y + L F Y Q + V N L + + +H
Sbjct: 146 ICTEDAFPARRMLEMSKALEARYPQEQLNFLGNIFVEHQYESQPLINCVSNRLPRLLQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
+ ++IIDS+A FR + D R R + +A L++ A K++ A++
Sbjct: 206 -SIGLIIIDSVAAIFRL-YTDFLERARQMRRLADALISYADKYNCAVV 251
>gi|448726994|ref|ZP_21709372.1| DNA repair and recombination protein RadA [Halococcus morrhuae DSM
1307]
gi|445792363|gb|EMA42969.1| DNA repair and recombination protein RadA [Halococcus morrhuae DSM
1307]
Length = 344
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 83/237 (35%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL +G+ S I AS ++S G TA D++ E +
Sbjct: 20 KLTESGFDSYQGIAVASPGELSNTADIGESTAADIINAARDAADIGGFETGADVLEHRNE 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E+GGL G AI
Sbjct: 80 IGKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPNEYGGLEGSAI 139
Query: 113 YIGKCLGFYTEQSAVINY-------------------------LDKFV------------ 135
+I F E+ A + + +D+F+
Sbjct: 140 FIDSEDTFRPERIAEMVHGLPNDAIAAAMDQREIEGSPESDEAMDEFIESILDNIHVAKA 199
Query: 136 -----------------SEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
SEH+D V++V IDS+ HFR +V +LA R + L+
Sbjct: 200 FNSNHQILLAQKAQDIASEHEDSEWPVRLVCIDSLTAHFRAEYVGRGELAQRQQKLN 256
>gi|448330556|ref|ZP_21519836.1| DNA repair and recombination protein RadA [Natrinema versiforme JCM
10478]
gi|445611434|gb|ELY65186.1| DNA repair and recombination protein RadA [Natrinema versiforme JCM
10478]
Length = 343
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ A+ S++S G TA D+++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSYQSLAVAAPSELSNTADVGDSTAADIVRAARDAADIG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNEIGKLSWHIDEIDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 125 QLPQEVGGLHGSAIFVDTEDTFRPER 150
>gi|355570859|ref|ZP_09042129.1| DNA repair and recombination protein radA [Methanolinea tarda
NOBI-1]
gi|354826141|gb|EHF10357.1| DNA repair and recombination protein radA [Methanolinea tarda
NOBI-1]
Length = 323
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 59/213 (27%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------- 47
+E+ LP + + KL AG+ ++ SI +AS +++ G TA M++
Sbjct: 6 LEIEDLPGVGPSTAEKLREAGFLTVESIATASPQELAETAEIGESTAKKMIKAAREMVDL 65
Query: 48 ----------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E+++ + ++ +LD +LGGG+ + +TE+ G G GK+Q+ Q AVN
Sbjct: 66 GGFRTGKDVFEQRKEVRKLKMRVPELDALLGGGLETQAITELYGEFGSGKSQVAHQAAVN 125
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE--------------------------------QS 125
VQ+P E GGL G AI+I F E Q
Sbjct: 126 VQLPEEEGGLMGSAIFIDTENTFRPERIEQMVLGLGIDADPEEFLENIHVARAHTSDHQM 185
Query: 126 AVINYLDKFVSEHKD----VKVVIIDSIAFHFR 154
+++ + E KD V+++IIDS+ HFR
Sbjct: 186 LMMDSAREKAQELKDSERPVRLIIIDSLTAHFR 218
>gi|448488854|ref|ZP_21607453.1| DNA repair and recombination protein RadA [Halorubrum
californiensis DSM 19288]
gi|445695475|gb|ELZ47578.1| DNA repair and recombination protein RadA [Halorubrum
californiensis DSM 19288]
Length = 343
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 84/269 (31%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVDNGFESYQSIAVASPGEMSNTADIGESSASDIINAAREAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERREEIGKLSWQIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+P E GGL G I++ F E +
Sbjct: 125 QLPPEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPSDEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALL 186
+LA R + L+ LM + F+ A+L
Sbjct: 245 GELADRQQKLNKHLHDLMRIGDLFNTAIL 273
>gi|343485007|dbj|BAJ50661.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
Length = 333
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 34/175 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++++ R+TT LD +LGGG+ + +TE+ G G GKTQ+ L V Q+P E GGL
Sbjct: 88 ERRKAMQRLTTGSRALDAMLGGGVETQAITELIGEFGSGKTQVCHTLCVMAQLPREQGGL 147
Query: 108 GGKAIYIGKCLGFYTEQ------------------------------SAVINYLDKFVSE 137
G AIYI F E+ + L ++V +
Sbjct: 148 EGSAIYIDTEATFRPERISQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELGRYVEK 207
Query: 138 HKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+K ++VIIDSI HFR F+ LA R + L+ + +L+ A+ ++A++ N
Sbjct: 208 YK-ARLVIIDSIISHFRAEFIGRGTLAERQQRLNDLLHRLLRTAQVHNIAVVLTN 261
>gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA, partial [Candidatus Caldiarchaeum
subterraneum]
Length = 316
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 34/175 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++++ R+TT LD +LGGG+ + +TE+ G G GKTQ+ L V Q+P E GGL
Sbjct: 71 ERRKAMQRLTTGSRALDAMLGGGVETQAITELIGEFGSGKTQVCHTLCVMAQLPREQGGL 130
Query: 108 GGKAIYIGKCLGFYTEQ------------------------------SAVINYLDKFVSE 137
G AIYI F E+ + L ++V +
Sbjct: 131 EGSAIYIDTEATFRPERISQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELGRYVEK 190
Query: 138 HKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+K ++VIIDSI HFR F+ LA R + L+ + +L+ A+ ++A++ N
Sbjct: 191 YK-ARLVIIDSIISHFRAEFIGRGTLAERQQRLNDLLHRLLRTAQVHNIAVVLTN 244
>gi|345803591|ref|XP_547868.3| PREDICTED: DNA repair protein RAD51 homolog 2 [Canis lupus
familiaris]
Length = 350
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 97/231 (41%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+ + E SL A + T+ + L
Sbjct: 31 LCLSPLELMKMTGLSYKGVHELLCMVSRACAPKMQTAYRIKMETSASLLPAFLATTLSAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGDVVYIDTESAFSAE 150
Query: 124 Q----------------------------------SAVINYLDKFVSE--HKDVKVVIID 147
+ AV+ ++ E K VK+VIID
Sbjct: 151 RLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELSCDAVLQRIESLEEEIISKGVKLVIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
S+A R F ++ R + L+ A L LA++FS+ ++ N TT
Sbjct: 211 SVASVVRKEFDTQLQGNMRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|448629900|ref|ZP_21672795.1| DNA repair and recombination protein RadA [Haloarcula vallismortis
ATCC 29715]
gi|445757321|gb|EMA08676.1| DNA repair and recombination protein RadA [Haloarcula vallismortis
ATCC 29715]
Length = 349
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G AI
Sbjct: 80 IGKLSWGVDEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPAEHGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|448320633|ref|ZP_21510119.1| DNA repair and recombination protein RadA [Natronococcus
amylolyticus DSM 10524]
gi|445605535|gb|ELY59457.1| DNA repair and recombination protein RadA [Natronococcus
amylolyticus DSM 10524]
Length = 343
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G T+ D+++ E +
Sbjct: 19 KLHEAGFDSFQSLAVASPSELSNTADVGESTSADIVRAARDAADVGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G+A+
Sbjct: 79 IGKMSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGRAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|255718911|ref|XP_002555736.1| KLTH0G16148p [Lachancea thermotolerans]
gi|238937120|emb|CAR25299.1| KLTH0G16148p [Lachancea thermotolerans CBS 6340]
Length = 478
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
EQ+ T+ D+D++LGGG+ +TEI G GK+Q +QL++ VQ+P GGL
Sbjct: 80 EQDCSLAFTSGDRDVDDLLGGGLRTHGITEIFGSSSTGKSQFLMQLSLCVQLPKSLGGLD 139
Query: 109 GKAIYI------------------GKCLGFYT---------------EQSAVIN-YLDKF 134
GK +YI + GF + Q ++N L
Sbjct: 140 GKCVYITTEGDLPTRRLDEMIRSKSQKDGFQSLSQDNIFTVNCNDLANQEHILNVQLPIL 199
Query: 135 VSEHKDVKVVIIDSIAFHF-----RHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ + D++++I+DS++ H R F D + +A L+N + K S+A++ N
Sbjct: 200 MERNHDIRLIIVDSVSHHVRVELERRSFKDSQDNRHYVDKMAQNLLNFSIKHSVAVVVAN 259
Query: 190 LATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVL 224
L E+ L DS + A QLG+ +
Sbjct: 260 QVGDKPLPEAKLA---DSSVERGPANYDYQLGWTV 291
>gi|448457837|ref|ZP_21595842.1| DNA repair and recombination protein RadA [Halorubrum lipolyticum
DSM 21995]
gi|445810138|gb|EMA60169.1| DNA repair and recombination protein RadA [Halorubrum lipolyticum
DSM 21995]
Length = 343
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 111/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSAADIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERREEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+P E GGL G I++ F E +
Sbjct: 125 QLPPEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILVDEMERREIEGTPSDEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVGAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEESEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELADRQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|336252683|ref|YP_004595790.1| DNA repair and recombination protein radA [Halopiger xanaduensis
SH-6]
gi|335336672|gb|AEH35911.1| DNA repair and recombination protein radA [Halopiger xanaduensis
SH-6]
Length = 343
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 19 KLQDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVGGFETGSTVLERRNK 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGSAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|183233498|ref|XP_654218.2| DNA repair protein RAD51C [Entamoeba histolytica HM-1:IMSS]
gi|169801545|gb|EAL48832.2| DNA repair protein RAD51C, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 283
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 35/193 (18%)
Query: 39 TQTAWDMLQEEQESLAR-ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
T+T ++++E +E R I T ++D L GGI E+T+I G PG GK+QL +Q+A N
Sbjct: 22 TKTLKELVEEVKEKKVRNIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACN 81
Query: 98 VQIPVEFGGLGGKAIYIGK----------------CLGFYTEQSAVINYLDKF-VSEHKD 140
VQ+P E GGL + IY C + + V L+K V + D
Sbjct: 82 VQLPEEIGGLNSECIYYDSYSQFCISRVQRMAECICASYPEYKLNVKEILEKIHVYQPHD 141
Query: 141 -----------------VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183
VKV+IIDSI ++ + +R L I L + K+ L
Sbjct: 142 IVSLCSSLLSINNKLNKVKVIIIDSIPTFYKKAMCNDTIRLAALHRIIQILSIYSNKYYL 201
Query: 184 ALLEPNLATTANL 196
+++ N TT +
Sbjct: 202 SVVIVNHLTTKKI 214
>gi|300709641|ref|YP_003735455.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
B3]
gi|448297588|ref|ZP_21487634.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
B3]
gi|299123324|gb|ADJ13663.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
B3]
gi|445579897|gb|ELY34290.1| DNA repair and recombination protein RadA [Halalkalicoccus jeotgali
B3]
Length = 344
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL+ GY + +S+ AS +++S G +A D+++ E +E
Sbjct: 20 KLLDNGYDTYTSLAVASPAELSNTADVGESSAGDIIRAARNAADVGGFETGSTVLERRER 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGL G AI
Sbjct: 80 IGKLSWQIPEVDEMLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPREQGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 140 FIDSEDTFRPER 151
>gi|448679793|ref|ZP_21690338.1| DNA repair and recombination protein RadA [Haloarcula argentinensis
DSM 12282]
gi|445769952|gb|EMA21021.1| DNA repair and recombination protein RadA [Haloarcula argentinensis
DSM 12282]
Length = 351
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL GY S I AS ++S G +A D++Q
Sbjct: 8 DLEELPGVGPATAEKLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIG 67
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNV
Sbjct: 68 GFETGSTVLERREQIGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNV 127
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G AI++ F E+
Sbjct: 128 QLPAEHGGLEGSAIFVDSEDTFRPER 153
>gi|452205950|ref|YP_007486072.1| DNA repair and recombination protein RadA [Natronomonas moolapensis
8.8.11]
gi|452082050|emb|CCQ35301.1| DNA repair and recombination protein RadA [Natronomonas moolapensis
8.8.11]
Length = 345
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL GY S SI A +++S G A D++Q
Sbjct: 7 DLEELPGVGPATADKLRENGYDSYQSIAVAGPAELSNTADVGESNANDIIQAARNAADIG 66
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + ++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNV
Sbjct: 67 GFETGADVLERREQIGKLEWLIPEVDEMLGGGVETQSITEVYGEFGAGKSQITHQLAVNV 126
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGLGG+ I++ F E+
Sbjct: 127 QLPSEAGGLGGRCIFVDSEDTFRPER 152
>gi|448683172|ref|ZP_21692146.1| DNA repair and recombination protein RadA [Haloarcula japonica DSM
6131]
gi|445784157|gb|EMA34975.1| DNA repair and recombination protein RadA [Haloarcula japonica DSM
6131]
Length = 349
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E GGL G AI
Sbjct: 80 IGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPAEHGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|301109016|ref|XP_002903589.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
gi|262097313|gb|EEY55365.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
Length = 284
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 87/197 (44%), Gaps = 45/197 (22%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEI----GGVPGIGKTQLGIQLAV 96
TA D+LQE +S I T LD +LGGG+ EVTEI G PG GKTQ GI +
Sbjct: 67 TALDLLQEVTKS-KPIATRLLGLDGLLGGGLQLGEVTEICRFGSGGPGSGKTQFGIHACL 125
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGF------------------------------------ 120
Q V+ G A++I F
Sbjct: 126 AAQYAVDEAGKKSSAVFIDSEGSFIIERVASMAKHFLEDFRHLGADKLTRDDLLRGITYY 185
Query: 121 ----YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMN 176
+ EQ +++ L ++ + K+++ID++AFHFRHGF D R R L +AL L
Sbjct: 186 RVHDFLEQVEILHSLPSYLQATPECKLLVIDTVAFHFRHGFEDYTQRARALDELALFLHG 245
Query: 177 LAKKFSLALLEPNLATT 193
LA F LA+L N TT
Sbjct: 246 LATDFDLAVLLINHITT 262
>gi|344210477|ref|YP_004794797.1| DNA repair and recombination protein RadA [Haloarcula hispanica
ATCC 33960]
gi|343781832|gb|AEM55809.1| DNA repair and recombination protein RadA [Haloarcula hispanica
ATCC 33960]
Length = 349
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL GY S I AS ++S G +A D++Q E +E
Sbjct: 20 KLEDNGYDSYQGIAVASPGELSNTADIGESSAADIIQAAREAADIGGFETGSTVLERREQ 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E GGL G AI
Sbjct: 80 IGKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPAEHGGLEGSAI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|448732182|ref|ZP_21714464.1| DNA repair and recombination protein RadA [Halococcus salifodinae
DSM 8989]
gi|445805094|gb|EMA55321.1| DNA repair and recombination protein RadA [Halococcus salifodinae
DSM 8989]
Length = 344
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL+ +G+ S I AS ++S G TA D++ E +
Sbjct: 20 KLMESGFDSYQGIAVASPGELSNTADIGESTAADIINAARDAADIGGFETGANVLERRNE 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T ++D +LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E+GGL G AI
Sbjct: 80 IGKLTWQVDEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPNEYGGLEGSAI 139
Query: 113 YIGKCLGFYTEQSA 126
+I F E+ A
Sbjct: 140 FIDSEDTFRPERIA 153
>gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon]
gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon]
gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon]
Length = 315
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 57/215 (26%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDI----SRGTQTAWDMLQEEQES--- 52
M++ +LP + KL AGY SL +I AS +++ G T+ ++ +E+
Sbjct: 1 MDIEELPGVGPAIAEKLREAGYNSLEAIAVASPAELVAAAEIGEATSAKIINSAREAAEI 60
Query: 53 ---------------LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
+ ++TT D++LGGG+ + +TE G G GKTQ+ QLAVN
Sbjct: 61 GGFETGDKILGRRLEIGKLTTGSTSFDDLLGGGLETQALTEFYGEFGSGKTQIAHQLAVN 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAV 127
VQ+P E GGL G I I F E Q +
Sbjct: 121 VQLPPENGGLNGSVIIIDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILL 180
Query: 128 INYLDKFVSE----HKDVKVVIIDSIAFHFRHGFV 158
++ ++ E K V+++I+DS HFR +V
Sbjct: 181 VDKAERLAEELIDTEKPVRLLIVDSATAHFRSEYV 215
>gi|408381004|ref|ZP_11178554.1| DNA repair and recombination protein RadA [Methanobacterium
formicicum DSM 3637]
gi|407816269|gb|EKF86831.1| DNA repair and recombination protein RadA [Methanobacterium
formicicum DSM 3637]
Length = 311
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKAEQI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA D++ E ++ + I T LD ++GGGI + +TE+ G G GK+Q+ ++AV
Sbjct: 62 DFETALDVM-ERRKDVGHIITGSTGLDELIGGGIETQAITEVFGEFGSGKSQISHEIAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQS---------------AVINYLDKFVSEHK--- 139
VQ+P E GGL G+ ++I F E+ I+ F S H+
Sbjct: 121 VQLPPEKGGLCGECVFIDTENTFRPERIKQIAEGFTLDVDEVLGKIHIARAFNSSHQILM 180
Query: 140 ------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
++++VI+DS+ HFR +V LA R + L+ L N+A +++A
Sbjct: 181 ADKVNELIQKGVNIRLVIVDSLTSHFRAEYVGRESLATRQQKLNQHLHTLQNIANTYNVA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|356567224|ref|XP_003551821.1| PREDICTED: DNA repair protein XRCC3 homolog [Glycine max]
Length = 288
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 44/191 (23%)
Query: 42 AWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
A ++LQ + + + T C LD L GG+ C VTE G G GKTQL +QLA++ Q+P
Sbjct: 3 AENLLQLQHRT-QKCTLGCPVLDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLP 61
Query: 102 VEFGGLGGKAIYIGKCLGFY-----------------------------------TEQSA 126
GGL +I+I F E
Sbjct: 62 PSHGGLSASSIFIHTEFPFPFRRLRHLSRAFRASHPDLPCSDPCDRVFLRAVHSAHELLN 121
Query: 127 VINYLDKFV----SEHKDVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLA 178
+I ++ F+ S + V++++IDSIA FR F DL R+ + GI+ L LA
Sbjct: 122 LIPTIETFLLHSKSPWRPVRIIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLA 181
Query: 179 KKFSLALLEPN 189
K+F +A++ N
Sbjct: 182 KRFGIAVVVTN 192
>gi|71667941|ref|XP_820915.1| DNA recombination and repair protein RAD51 [Trypanosoma cruzi
strain CL Brener]
gi|70886278|gb|EAN99064.1| DNA recombination and repair protein RAD51, putative [Trypanosoma
cruzi]
Length = 492
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 31 SSSDISRGTQTAWDMLQ-EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQ 89
S I T+T +ML+ E + R+TT C +D +LGGG+ V+E+ G PG+GKTQ
Sbjct: 97 SDYHIPPETRTLEEMLKVEADKESERVTTFCRGIDTLLGGGLPVGAVSEVCGAPGVGKTQ 156
Query: 90 LGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+ +QLAVN +P E GGL G ++I F E+
Sbjct: 157 MLMQLAVNCLLPRELGGLHGSCLFIDTEGSFVPER 191
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 126 AVINYLDKFVSEHKDVKVVIIDSIAFHFR 154
A++N L +++ H DV++V+IDSIAF FR
Sbjct: 291 ALLNVLPTYLASHSDVRMVVIDSIAFPFR 319
>gi|6714639|dbj|BAA89533.1| LIM15/DMC1 homolog [Coprinopsis cinerea]
Length = 345
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+Q++++ + I+T +D ILGGG+ + +TE+ G GKTQL ++V Q+P E+G
Sbjct: 98 IQDKRKRVLVISTGSKLVDGILGGGVMSQSITEVYGEYRTGKTQLAHTMSVVAQLPPEYG 157
Query: 106 GLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH------------ 138
G GK YI F ++ I Y F SEH
Sbjct: 158 GAAGKVAYIDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSARF 217
Query: 139 ---KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD +++IIDSI FR G +L+ R + L+ + KL L+++F++A+L N
Sbjct: 218 AEDKDFRLLIIDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSEEFNIAVLMTN 274
>gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii ATCC 35061]
gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
DSM 2375]
gi|166218764|sp|A5UMW0.1|RADA_METS3 RecName: Full=DNA repair and recombination protein RadA
gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC
35061]
gi|222435201|gb|EEE42366.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2375]
Length = 311
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA+D+L E + + I+ ++++GGGI + +TE+ G G GK+Q+ +LAV VQ
Sbjct: 64 ETAYDVL-ERRRDVGHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQ 122
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVIN 129
+P E GGL G+ ++I F E Q +
Sbjct: 123 LPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAE 182
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+++ + + ++K+VI+DS+ HFR +V LA+R + L+ L +A +++A+
Sbjct: 183 KINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTYNVAVF 242
Query: 187 EPN 189
N
Sbjct: 243 ITN 245
>gi|448737671|ref|ZP_21719707.1| DNA repair and recombination protein RadA [Halococcus thailandensis
JCM 13552]
gi|445803468|gb|EMA53763.1| DNA repair and recombination protein RadA [Halococcus thailandensis
JCM 13552]
Length = 344
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL +G+ S I AS ++S G TA D++ E +
Sbjct: 20 KLTESGFDSYQGIAVASPGELSNTADIGESTAADIINAARDAADIGGFETGADVLEHRNE 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+GGL G AI
Sbjct: 80 IGKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPNEYGGLEGSAI 139
Query: 113 YIGKCLGFYTEQSA 126
+I F E+ A
Sbjct: 140 FIDSEDTFRPERIA 153
>gi|383619892|ref|ZP_09946298.1| DNA repair and recombination protein RadA [Halobiforma lacisalsi
AJ5]
gi|448696557|ref|ZP_21697969.1| DNA repair and recombination protein RadA [Halobiforma lacisalsi
AJ5]
gi|445783185|gb|EMA34020.1| DNA repair and recombination protein RadA [Halobiforma lacisalsi
AJ5]
Length = 343
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ AS S++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLQDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNKIGKLSWHIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G A++I F E+
Sbjct: 125 QLPKEVGGLHGSAMFIDSEDTFRPER 150
>gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2374]
gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2374]
Length = 314
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA+D+L E + + I+ ++++GGGI + +TE+ G G GK+Q+ +LAV VQ
Sbjct: 67 ETAYDVL-ERRRDVGHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQ 125
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVIN 129
+P E GGL G+ ++I F E Q +
Sbjct: 126 LPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAE 185
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+++ + + ++K+VI+DS+ HFR +V LA+R + L+ L +A +++A+
Sbjct: 186 KINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTYNVAVF 245
Query: 187 EPN 189
N
Sbjct: 246 ITN 248
>gi|448388471|ref|ZP_21565246.1| DNA repair and recombination protein RadA [Haloterrigena salina JCM
13891]
gi|445670226|gb|ELZ22829.1| DNA repair and recombination protein RadA [Haloterrigena salina JCM
13891]
Length = 343
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTASDIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G AI
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGGLHGCAI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|435845511|ref|YP_007307761.1| DNA repair and recombination protein RadA [Natronococcus occultus
SP4]
gi|433671779|gb|AGB35971.1| DNA repair and recombination protein RadA [Natronococcus occultus
SP4]
Length = 343
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G T+ D+++ E +
Sbjct: 19 KLHEAGFDSFQSLAVASPSELSNTADVGESTSADIVRAARDAADIGGFETGSAVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGSAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|429191734|ref|YP_007177412.1| DNA repair and recombination protein RadA [Natronobacterium
gregoryi SP2]
gi|448325122|ref|ZP_21514520.1| DNA repair and recombination protein RadA [Natronobacterium
gregoryi SP2]
gi|429135952|gb|AFZ72963.1| DNA repair and recombination protein RadA [Natronobacterium
gregoryi SP2]
gi|445616261|gb|ELY69889.1| DNA repair and recombination protein RadA [Natronobacterium
gregoryi SP2]
Length = 343
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 19 KLQDAGFESFQSLAVASPSELSNTADVGESTAADIVSAARDAADIGGFETGSTVLERRNK 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPEEVGGLHGSAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|328705511|ref|XP_001944618.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Acyrthosiphon
pisum]
Length = 332
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 9/108 (8%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA D L E++S+A T C +D +L GGI +TE+ G PG GK+QL +QL V+VQ
Sbjct: 63 KTAAD-LDIERDSIA---TFCKSIDELLNGGIQVGRITELSGAPGSGKSQLSMQLCVSVQ 118
Query: 100 IPVEFGGLGGKAIYIGKCLGF----YTEQ-SAVINYLDKFVSEHKDVK 142
IPV F GL G+AIY+ F TE A + ++ K +S D K
Sbjct: 119 IPVCFEGLQGEAIYVDTNSNFSELRLTEMIDAFLGHVSKVLSGPNDFK 166
>gi|410721995|ref|ZP_11361313.1| DNA repair and recombination protein RadA [Methanobacterium sp.
Maddingley MBC34]
gi|410597944|gb|EKQ52545.1| DNA repair and recombination protein RadA [Methanobacterium sp.
Maddingley MBC34]
Length = 311
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGEKTAQKLRDAGFADMMRLATATAKELSVKAEIGEGVAEKVIEAARKAEQI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA D++ E ++ + I T LD ++GGGI + +TE+ G G GK+Q+ ++AV
Sbjct: 62 DFETALDVM-ERRKDVGHIITGSTGLDELIGGGIETQAITEVFGEFGSGKSQISHEIAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQS---------------AVINYLDKFVSEHK--- 139
VQ+P E GGL G ++I F E+ I+ F S H+
Sbjct: 121 VQLPPEKGGLCGDCVFIDTENTFRPERIKQIAEGFTLDVEEVLGKIHIARAFNSSHQILM 180
Query: 140 ------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
++++VI+DS+ HFR +V LA R + L+ L N+A +++A
Sbjct: 181 ADKVNELIQSGVNIRLVIVDSLTAHFRAEYVGRESLATRQQKLNQHLHTLQNIANTYNVA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>gi|448312339|ref|ZP_21502086.1| DNA repair and recombination protein RadA [Natronolimnobius
innermongolicus JCM 12255]
gi|445601939|gb|ELY55920.1| DNA repair and recombination protein RadA [Natronolimnobius
innermongolicus JCM 12255]
Length = 343
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAGDIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G I
Sbjct: 79 IGKLSWHIDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGGLHGSTI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|448357184|ref|ZP_21545890.1| DNA repair and recombination protein RadA [Natrialba chahannaoensis
JCM 10990]
gi|445649992|gb|ELZ02923.1| DNA repair and recombination protein RadA [Natrialba chahannaoensis
JCM 10990]
Length = 343
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWQIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGSAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
ATCC 49239]
gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
ATCC 49239]
Length = 343
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSASDIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGGI + +TE+ G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERREEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFASGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+P E GGL G I++ F E +
Sbjct: 125 QLPAEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDDILADEMERREIEGTPNDEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
+ +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LIAAFLDQIHVAKAFNSNHQILLAEKAKELAGELEESEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELADRQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|289581501|ref|YP_003479967.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
43099]
gi|448283086|ref|ZP_21474365.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
43099]
gi|289531054|gb|ADD05405.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
43099]
gi|445574794|gb|ELY29282.1| DNA repair and recombination protein RadA [Natrialba magadii ATCC
43099]
Length = 343
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWQIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGAAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri
str. Fusaro]
gi|121695787|sp|Q46A31.1|RADA_METBF RecName: Full=DNA repair and recombination protein RadA
gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
Length = 325
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 65/240 (27%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDIVLERRKM 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQL Q AVNVQ+ E GGL G I
Sbjct: 79 VGKLTTGCMEFDEMMGGGIETQAITELYGEFGSGKTQLAHQFAVNVQMDREHGGLNGSVI 138
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEH------------- 138
I F E+ A I+ + S H
Sbjct: 139 IIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQILLVDSATDLAN 198
Query: 139 ------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K V+++I+DS+ HFR +V LA R + L+ L+ F+ +++ N
Sbjct: 199 ELREMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDLFNASVVVTN 258
>gi|301763292|ref|XP_002917067.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Ailuropoda
melanoleuca]
Length = 344
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 40 QTAWDMLQEEQESL--ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA+ M SL A + T+ + LD L GG+ C +TEI G PG GKTQ I +++
Sbjct: 65 QTAYGMKMRTSASLSPAFLATTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------------------- 124
+P GGL G +YI F E+
Sbjct: 125 ATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELS 184
Query: 125 -SAVINYLDKFVSE--HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMN 176
V+ +D E K VK+VIIDS+A R F ++ R + L+ A L
Sbjct: 185 CDEVLRRIDSLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREAASLKY 244
Query: 177 LAKKFSLALLEPNLATT 193
LA++FS+ ++ N TT
Sbjct: 245 LAEEFSIPVILTNQITT 261
>gi|448401674|ref|ZP_21571740.1| DNA repair and recombination protein RadA [Haloterrigena limicola
JCM 13563]
gi|445666364|gb|ELZ19030.1| DNA repair and recombination protein RadA [Haloterrigena limicola
JCM 13563]
Length = 343
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTASDIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G I
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGGLHGSCI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|407035372|gb|EKE37666.1| DNA repair protein RAD51C, putative [Entamoeba nuttalli P19]
Length = 264
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 35/193 (18%)
Query: 39 TQTAWDMLQEEQESLAR-ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
T+T ++++E +E R I T ++D L GGI E+T+I G PG GK+QL +Q+A N
Sbjct: 3 TKTLKELVEEVKEKKVRNIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACN 62
Query: 98 VQIPVEFGGLGGKAIYIGK----------------CLGFYTEQSAVINYLDKF-VSEHKD 140
VQ+P E GGL + IY C + + V L+K V + D
Sbjct: 63 VQLPEEIGGLNSECIYYDSYSQFCISRVQRMAECICASYPEYKLNVKEILEKIHVYQPHD 122
Query: 141 -----------------VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183
VK++IIDSI ++ + +R L I L + K+ L
Sbjct: 123 IVSLCSSLLSINNKLNKVKLIIIDSIPTFYKKAMCNDTIRLAALHRIIQILSIYSNKYYL 182
Query: 184 ALLEPNLATTANL 196
+++ N TT +
Sbjct: 183 SVVIVNHLTTKKI 195
>gi|407847790|gb|EKG03393.1| DNA repair protein RAD51, putative [Trypanosoma cruzi]
Length = 282
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 31 SSSDISRGTQTAWDMLQ-EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQ 89
S I T+T +ML+ E + R+TT C +D +LGGG+ V+E+ G PG+GKTQ
Sbjct: 97 SDYHIPPETRTLEEMLKLEADKESERVTTFCRGIDTLLGGGLPVGTVSEVCGPPGVGKTQ 156
Query: 90 LGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+ +QLAVN +P E GGL G ++I F E+
Sbjct: 157 MLMQLAVNCLLPRELGGLHGSCLFIDTEGSFVPER 191
>gi|147781098|emb|CAN73845.1| hypothetical protein VITISV_001338 [Vitis vinifera]
Length = 453
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G ++S + S +S TQTA ++++ + E +A + T LD LGGGI
Sbjct: 40 ELLDVGMARVTSAVAHISEIVSPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVIN 129
+TE+ G PGIGKTQ ++L++ +P +GGL G+ IYI F + + VI
Sbjct: 100 PFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYIDAESKFSSRRYLLLVIQ 159
Query: 130 YLDKFVSEHKDVKVVIIDSIA 150
++ K VK+++IDS+A
Sbjct: 160 HI-KISLLQNHVKLLVIDSMA 179
>gi|284163506|ref|YP_003401785.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
DSM 5511]
gi|284013161|gb|ADB59112.1| DNA repair and recombination protein RadA [Haloterrigena turkmenica
DSM 5511]
Length = 343
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSYQSLAVASPSELSNTADVGESTASDIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G AI
Sbjct: 79 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGGLHGCAI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|124485461|ref|YP_001030077.1| DNA repair and recombination protein RadA [Methanocorpusculum
labreanum Z]
gi|226736607|sp|A2SR54.1|RADA_METLZ RecName: Full=DNA repair and recombination protein RadA
gi|124363002|gb|ABN06810.1| DNA repair and recombination protein RadA [Methanocorpusculum
labreanum Z]
Length = 329
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+++ ++P + +L AGY ++ SI +A+ D++
Sbjct: 4 LDIEEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAAREMADI 63
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+L Q+ L ++ T ++D + GGG+ + +TE+ G G GK+Q+ QLAV
Sbjct: 64 GGFKTGTDILARRQDVL-KLKTLVPEIDELFGGGLETQAITELYGEFGSGKSQIAHQLAV 122
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
N Q+P E GGLGG +YI F E+
Sbjct: 123 NCQLPQELGGLGGSCLYIDTENTFRPER 150
>gi|332017004|gb|EGI57803.1| DNA repair protein XRCC3 [Acromyrmex echinatior]
Length = 247
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TT C+ LD LGGGI CR +T++ G G GKTQL +QL + VQ+P+ GGLG AIYI
Sbjct: 11 LTTGCSRLDAKLGGGIPCRGITQLYGAAGTGKTQLALQLCLTVQLPITAGGLGAGAIYI 69
>gi|448354451|ref|ZP_21543208.1| DNA repair and recombination protein RadA [Natrialba hulunbeirensis
JCM 10989]
gi|445637968|gb|ELY91115.1| DNA repair and recombination protein RadA [Natrialba hulunbeirensis
JCM 10989]
Length = 343
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVNAARDAADVGGFETGSTVLERRNK 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G A+
Sbjct: 79 IGKLSWQIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGAAM 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|431904503|gb|ELK09886.1| DNA repair protein RAD51 like protein 2 [Pteropus alecto]
Length = 295
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 43/226 (19%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADLDN 65
+S + K+ Y + + S + QTA+ M + +L A ++T+ + LD
Sbjct: 65 LSPLELMKMTGLSYRGVHELVYVVSRACAPQMQTAYGMKTQRSTALLPAFLSTTLSALDE 124
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ- 124
L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E+
Sbjct: 125 ALRGGVACGSLTEITGPPGCGKTQFCIMMSVLATLPTNMGGLEGAVVYIDTESAFSAERL 184
Query: 125 ---------------------------------SAVINYLDKFVSE--HKDVKVVIIDSI 149
V+ ++ E K VK+VIIDS+
Sbjct: 185 VEIAESRFPRYFNDEEKLLLTSSKVHLYRELNCDEVLQRIESLEEEIISKGVKLVIIDSV 244
Query: 150 AFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
A R F ++ R + L+ A L LA++FS+ +P L
Sbjct: 245 ASVVRKEFDTQLEGNMRERNKFLAREAASLKYLAEEFSIPAQDPEL 290
>gi|448376702|ref|ZP_21559702.1| DNA repair and recombination protein RadA [Halovivax asiaticus JCM
14624]
gi|445656438|gb|ELZ09272.1| DNA repair and recombination protein RadA [Halovivax asiaticus JCM
14624]
Length = 344
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D++ E +
Sbjct: 20 KLTDAGFDSFQSLAVASPSELSNTADVGESTAADIVSAARDAADVGGFETGSTVLERRNK 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G I
Sbjct: 80 IGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNVQLPKEVGGLHGSCI 139
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 140 FVDSEDTFRPER 151
>gi|407404572|gb|EKF29970.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi
marinkellei]
Length = 492
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 31 SSSDISRGTQTAWDMLQ-EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQ 89
S IS +T +ML+ E + R+TT C +D +LGGG+ V+EI G PG+GKTQ
Sbjct: 97 SDYHISPEIRTLEEMLKLEADKESERVTTFCRGIDTLLGGGMPVGTVSEICGPPGVGKTQ 156
Query: 90 LGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+ +QLAVN +P E GGL G ++I F E+
Sbjct: 157 MLMQLAVNCLLPRELGGLHGSCLFIDTEGSFLPER 191
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 17/67 (25%)
Query: 105 GGLGGKAIYIGKCLGFYT-----EQS------------AVINYLDKFVSEHKDVKVVIID 147
G GG I + GF+T +Q+ A++N L +++ H DV++V+ID
Sbjct: 253 GRAGGAGISLAALAGFFTVEYVLQQTQYLRVVDVVSLMALLNVLPTYLASHSDVRMVVID 312
Query: 148 SIAFHFR 154
SIAF FR
Sbjct: 313 SIAFPFR 319
>gi|448366694|ref|ZP_21554817.1| DNA repair and recombination protein RadA [Natrialba aegyptia DSM
13077]
gi|445654149|gb|ELZ07005.1| DNA repair and recombination protein RadA [Natrialba aegyptia DSM
13077]
Length = 343
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ A+ +++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSFQSLAVAAPAELSNTADVGDSTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGSTVLERRNKIGKLSWQVDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G A+++ F E+
Sbjct: 125 QLPKEVGGLHGAAMFVDSEDTFRPER 150
>gi|448262384|pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
gi|448262385|pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
gi|448262386|pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
gi|448262387|pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
gi|448262388|pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
gi|448262389|pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
gi|448262390|pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
gi|448262391|pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
gi|448262392|pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
gi|453055723|pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G
Sbjct: 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQS---------------AVINYLDKFVSEH------------------ 138
++I F E+ I Y F S H
Sbjct: 63 MWIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177
>gi|30686826|ref|NP_188928.2| meiotic recombination protein DMC1-like protein [Arabidopsis
thaliana]
gi|21903409|sp|Q39009.2|DMC1_ARATH RecName: Full=Meiotic recombination protein DMC1 homolog
gi|1790922|gb|AAC49617.1| AtDMC1 [Arabidopsis thaliana]
gi|66792672|gb|AAY56438.1| At3g22880 [Arabidopsis thaliana]
gi|332643166|gb|AEE76687.1| meiotic recombination protein DMC1-like protein [Arabidopsis
thaliana]
Length = 344
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ +ITT C LD++LGGGI +TE G
Sbjct: 76 KVDKICEAAEKIVNFGYMTGSDALIK-RKSVVKITTGCQALDDLLGGGIETSAITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V Q+P G GK YI F ++ AV++
Sbjct: 135 FRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DSI FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 255 LSRLIKIAEEFNVAVYMTN 273
>gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1]
Length = 324
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 23/135 (17%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTA--------------- 42
+ +LP + KL AG+ S+ +I AS S+++ G TA
Sbjct: 6 IEELPGVGPATAEKLKDAGFNSVEAIAVASPSELAATAEIGESTAVKIIAAARTSADVGG 65
Query: 43 ---WDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
D + E ++ + ++ C ++DN++GGG + +TE+ G G GKTQ+ QLAVNVQ
Sbjct: 66 FETGDAILERRKEIGKLKLGCTEVDNMMGGGFETQAITEVYGEFGSGKTQIAHQLAVNVQ 125
Query: 100 IPVEFGGLGGKAIYI 114
+PV GGL G I I
Sbjct: 126 LPVGLGGLYGSVIII 140
>gi|335292717|ref|XP_003128695.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Sus scrofa]
Length = 350
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 43/229 (18%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQ--ESLARITTSCADLDN 65
+S + K+ Y + + S + QTA+++ + S A ++T+ + LD
Sbjct: 33 LSPLELMKMTGLSYQGVHDLLCLVSRACAPPMQTAYEIKTQRSAVPSPAFLSTTLSALDE 92
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ- 124
L GG+ C +TEI G PG GKTQ I +++ +P++ GGL G +YI F E+
Sbjct: 93 ALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPIDMGGLEGAVVYIDTESAFSAERL 152
Query: 125 ---------------------------------SAVINYLDKFVSE--HKDVKVVIIDSI 149
V+ ++ E K VK+VIIDS+
Sbjct: 153 VEMAESRFPRYFSTEEKLLLTVSKVHLYRELSCDEVLQRIESLEEEIISKGVKLVIIDSV 212
Query: 150 AFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
A R F ++ R + L+ A L LA++FS+ ++ N TT
Sbjct: 213 ASVVRKEFDTQLQGNMRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|209946394|gb|ACI97428.1| spindle B [Drosophila melanogaster]
Length = 404
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|335772663|gb|AEH58136.1| DNA repair protein RAD51-like protein 2 [Equus caballus]
Length = 284
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 43/229 (18%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADLDN 65
+S + K+ Y + + S + QTA+ + + +L A + T+ + LD
Sbjct: 33 LSPLELMKMTGLSYRGVHELLCMVSRACAPQMQTAYGIKTQRSAALSPAFLPTTLSALDE 92
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ- 124
L GG+ C +TEI G PG GKTQ I +++ +P++ GGL G +YI F E+
Sbjct: 93 ALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPIDMGGLEGAVVYIDTEAAFSAERL 152
Query: 125 --------SAVINYLDKFV----SEH-----------------------KDVKVVIIDSI 149
+ N DK + + H K VK+VIIDS+
Sbjct: 153 VEIAESRFPSYFNNEDKLLLTSSNVHLYRELSCDEVLQRVESLEEEIISKGVKLVIIDSV 212
Query: 150 AFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
A R F ++ R + L+ A L LA++FS+ ++ N TT
Sbjct: 213 ASVVRKEFDTQLQGNMRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|209946400|gb|ACI97431.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|209946368|gb|ACI97415.1| spindle B [Drosophila melanogaster]
gi|209946390|gb|ACI97426.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|11994717|dbj|BAB03033.1| AtDMC1 (meiotic recombination protein)-like protein [Arabidopsis
thaliana]
Length = 332
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ +ITT C LD++LGGGI +TE G
Sbjct: 64 KVDKICEAAEKIVNFGYMTGSDALIK-RKSVVKITTGCQALDDLLGGGIETSAITEAFGE 122
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V Q+P G GK YI F ++ AV++
Sbjct: 123 FRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 182
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DSI FR F +LA R + L+ +
Sbjct: 183 IIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQM 242
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 243 LSRLIKIAEEFNVAVYMTN 261
>gi|17136506|ref|NP_476740.1| spindle B [Drosophila melanogaster]
gi|3643817|gb|AAC42663.1| spindle B [Drosophila melanogaster]
gi|7299874|gb|AAF55050.1| spindle B [Drosophila melanogaster]
gi|201065577|gb|ACH92198.1| FI03211p [Drosophila melanogaster]
gi|209946376|gb|ACI97419.1| spindle B [Drosophila melanogaster]
gi|209946392|gb|ACI97427.1| spindle B [Drosophila melanogaster]
gi|209946398|gb|ACI97430.1| spindle B [Drosophila melanogaster]
gi|209946404|gb|ACI97433.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|222154113|gb|ACM47236.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
Length = 344
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YIG F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIGTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLVAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|209946360|gb|ACI97411.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|149737201|ref|XP_001500140.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Equus caballus]
Length = 350
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 43/229 (18%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADLDN 65
+S + K+ Y + + S + QTA+ + + +L A + T+ + LD
Sbjct: 33 LSPLELMKMTGLSYRGVHELLCMVSRACAPQMQTAYGIKTQRSAALSPAFLPTTLSALDE 92
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ- 124
L GG+ C +TEI G PG GKTQ I +++ +P++ GGL G +YI F E+
Sbjct: 93 ALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPIDMGGLEGAVVYIDTEAAFSAERL 152
Query: 125 --------SAVINYLDKFV----SEH-----------------------KDVKVVIIDSI 149
+ N DK + + H K VK+VIIDS+
Sbjct: 153 VEIAESRFPSYFNNEDKLLLTSSNVHLYRELSCDEVLQRVESLEEEIISKGVKLVIIDSV 212
Query: 150 AFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
A R F ++ R + L+ A L LA++FS+ ++ N TT
Sbjct: 213 ASVVRKEFDTQLQGNMRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|448731443|ref|ZP_21713743.1| DNA repair and recombination protein RadA [Halococcus
saccharolyticus DSM 5350]
gi|445792196|gb|EMA42808.1| DNA repair and recombination protein RadA [Halococcus
saccharolyticus DSM 5350]
Length = 344
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 22/134 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL +G+ S I AS ++S G TA D++ E +
Sbjct: 20 KLTESGFDSYQGIAVASPGELSNTADIGESTAADIINAARDAADIGGFETGANVLERRNE 79
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E+GGL G AI
Sbjct: 80 IGKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLSVNVQLPKEYGGLEGSAI 139
Query: 113 YIGKCLGFYTEQSA 126
+I F E+ A
Sbjct: 140 FIDSEDTFRPERIA 153
>gi|209946358|gb|ACI97410.1| spindle B [Drosophila melanogaster]
gi|209946362|gb|ACI97412.1| spindle B [Drosophila melanogaster]
gi|209946366|gb|ACI97414.1| spindle B [Drosophila melanogaster]
gi|209946370|gb|ACI97416.1| spindle B [Drosophila melanogaster]
gi|209946372|gb|ACI97417.1| spindle B [Drosophila melanogaster]
gi|209946374|gb|ACI97418.1| spindle B [Drosophila melanogaster]
gi|209946380|gb|ACI97421.1| spindle B [Drosophila melanogaster]
gi|209946382|gb|ACI97422.1| spindle B [Drosophila melanogaster]
gi|209946386|gb|ACI97424.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|209946344|gb|ACI97403.1| spindle B [Drosophila melanogaster]
gi|209946356|gb|ACI97409.1| spindle B [Drosophila melanogaster]
gi|209946384|gb|ACI97423.1| spindle B [Drosophila melanogaster]
gi|209946396|gb|ACI97429.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|209946402|gb|ACI97432.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSXXCSALDRCTGGGVVTRGITELCGAAGVGKTQLLXQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|209946354|gb|ACI97408.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|209946406|gb|ACI97434.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVXNHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|414145410|pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
gi|422919264|pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
gi|422919265|pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
gi|422919266|pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
gi|422919267|pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
gi|422919268|pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 37/175 (21%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G
Sbjct: 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------ 138
I+I F E+ V+ ++ F S H
Sbjct: 63 IWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177
>gi|433639706|ref|YP_007285466.1| DNA repair and recombination protein RadA [Halovivax ruber XH-70]
gi|433291510|gb|AGB17333.1| DNA repair and recombination protein RadA [Halovivax ruber XH-70]
Length = 344
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 23/147 (15%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ-------- 47
+++ LP + KL AG+ S S+ AS S++S G TA D++
Sbjct: 5 VDLETLPGVGPATADKLSDAGFDSFQSLAVASPSELSNTADVGESTAADIVSAARDAADV 64
Query: 48 ----------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E + + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVN
Sbjct: 65 GGFETGSTVLERRNKIGKLSWHIDEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQMAVN 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
VQ+P E GGL G I++ F E+
Sbjct: 125 VQLPKEVGGLHGSCIFVDSEDTFRPER 151
>gi|383319080|ref|YP_005379921.1| DNA repair and recombination protein RadA [Methanocella conradii
HZ254]
gi|379320450|gb|AFC99402.1| DNA repair and recombination protein RadA [Methanocella conradii
HZ254]
Length = 324
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 64/253 (25%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSIC------SASSSDISRGTQTAW---------- 43
M + LP + KL AGYTS+ +I A+++++ T
Sbjct: 6 MTIEDLPGVGPATADKLKEAGYTSIEAIAVASPAELAAAAEVGENTAAKIVAAAKKCSNI 65
Query: 44 ------DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
D + E ++++ ++ T + LD +LGGG+ + +TE G G GKTQ+ QLAVN
Sbjct: 66 GGFETGDAVFERRKAVGKLKTGSSALDELLGGGVETQSITEFYGEFGSGKTQVAHQLAVN 125
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI-------------NYL------------- 131
VQ+P E GGL G I I F E+ A + ++L
Sbjct: 126 VQLPPEEGGLNGSVIMIDTENTFRPERIAQMVKGLKNGDDYDPEDFLKNIHVARAYNSNH 185
Query: 132 ------------DKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+K K V+++I+DS+ HFR +V LA R + L+ LM
Sbjct: 186 QILLVESASELAEKLKDSDKPVRLIIVDSLTAHFRSEYVGRGTLADRQQKLNKHMHDLMR 245
Query: 177 LAKKFSLALLEPN 189
+ A++ N
Sbjct: 246 FGDINNAAIIVTN 258
>gi|348536303|ref|XP_003455636.1| PREDICTED: DNA repair protein XRCC3-like [Oreochromis niloticus]
Length = 339
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 10/109 (9%)
Query: 47 QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
Q+ Q ++ + C LD +L GG+ +TE+ G G GKTQ+G+QL+++VQ P E GG
Sbjct: 66 QQLQHGVSGVRLGCPVLDRLLRGGLPVGGITELAGESGTGKTQVGLQLSLSVQYPAEHGG 125
Query: 107 LGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAF 151
LG A+Y+ C TE S I L + + E DV +++S+ F
Sbjct: 126 LGAGALYV--C----TEDSFPIKRLHQLIGEQVCLRSDVPADLVNSLRF 168
>gi|448308021|ref|ZP_21497903.1| DNA repair and recombination protein RadA [Natronorubrum bangense
JCM 10635]
gi|445594640|gb|ELY48790.1| DNA repair and recombination protein RadA [Natronorubrum bangense
JCM 10635]
Length = 343
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS S++S G TA D+++ E +
Sbjct: 19 KLHDAGFDSFQSLAVASPSELSNTADVGESTAADIVRAARDAADIGGFETGSTVLERRNE 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D++LGGG+ + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G AI
Sbjct: 79 IGKLSWHIDEVDDLLGGGMETQSITEVYGEFGSGKSQVTHQMAVNVQLPKEVGGLHGCAI 138
Query: 113 YIGKCLGFYTEQ 124
++ F E+
Sbjct: 139 FVDSEDTFRPER 150
>gi|403417754|emb|CCM04454.1| predicted protein [Fibroporia radiculosa]
Length = 345
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+QE+++ + ++T +D ILGGGI + +TE+ G GKTQL ++V Q+P + G
Sbjct: 98 IQEKRKRVLMVSTGSKSVDTILGGGIMSQSITEVYGEYRTGKTQLAHTMSVVTQLPPDMG 157
Query: 106 GLGGKAIYIGKCLGFYTE------QSAVIN---------YLDKFVSEH------------ 138
G GK YI F + Q +N Y F SEH
Sbjct: 158 GAAGKVAYIDTEGTFRPDRIRSIAQRFGVNGDMALENILYARAFNSEHQMELINECSIRF 217
Query: 139 ---KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD +++I+DSI FR + +L+ R + L+ + KL L++++++A+L N
Sbjct: 218 AEDKDFRLLIVDSIMACFRTDYSGRGELSERQQKLAQMLSKLSKLSEEYNIAILLTN 274
>gi|399576191|ref|ZP_10769948.1| DNA repair and recombination protein RadA [Halogranum salarium B-1]
gi|399238902|gb|EJN59829.1| DNA repair and recombination protein RadA [Halogranum salarium B-1]
Length = 343
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSAS--------------SSDISRGTQTAWDM- 45
++ LP + KL AG+ + S+ AS ++DI R Q A D+
Sbjct: 5 DLENLPGVGPATADKLTDAGFNTYESLAVASPADLATKADVGDSTATDIVRAAQNAADIG 64
Query: 46 -------LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+ E +E + +++ ++D++LGGG+ + +TE G G GK+Q+ Q++VNV
Sbjct: 65 GFETGTAVLEHREKIGKLSWQIPEVDDLLGGGLETQSITEAYGEFGAGKSQITHQMSVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G I+I F E+
Sbjct: 125 QLPKEVGGLRGSVIFIDSEDTFRPER 150
>gi|322368119|ref|ZP_08042688.1| DNA repair and recombination protein RadA [Haladaptatus
paucihalophilus DX253]
gi|320552135|gb|EFW93780.1| DNA repair and recombination protein RadA [Haladaptatus
paucihalophilus DX253]
Length = 343
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL AG+ S S+ AS ++S G T+ D++Q E +E
Sbjct: 19 KLRDAGFDSYQSLAVASPGELSNTADVGESTSADIIQAARKEADIGGFETGSQVLERRER 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QL+VNVQ+P E GGL G I
Sbjct: 79 IGKLSWQIDEVDELLGGGVETQSITEVYGEFGAGKSQITHQLSVNVQLPPEQGGLHGSVI 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDSEDTFRPER 150
>gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
DSM 12286]
gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
DSM 12286]
Length = 349
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 22 TSLSSICSASSSDISRGTQTAWDM--------LQEEQESLARITTSCADLDNILGGGIGC 73
++ + I +S++DI + + A D+ + E +E + ++T S +++D++LGGGI
Sbjct: 41 SNTADIGESSAADIIQAAREAADIGGFETGATVLERREQIGKLTWSVSEVDDLLGGGIET 100
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVINYLD 132
+ +TE+ G G GK+Q+ Q++V VQ+P E GGL G AI++ F E+ ++ LD
Sbjct: 101 QSITEVYGEFGAGKSQVTHQISVTVQLPAEHGGLEGSAIFVDSEDTFRPERIDQMVRGLD 160
Query: 133 KFVSE 137
V E
Sbjct: 161 DDVLE 165
>gi|159119566|ref|XP_001710001.1| Dmc1b [Giardia lamblia ATCC 50803]
gi|30578213|gb|AAP35103.1|AF485824_1 DMC1-B [Giardia intestinalis]
gi|33667820|gb|AAQ24510.1| Dmc1b [Giardia intestinalis]
gi|157438119|gb|EDO82327.1| Dmc1b [Giardia lamblia ATCC 50803]
Length = 368
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 35/182 (19%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T + L++ Q+ + R++T CAD + +LGGG+ +TE+ G GKTQL LAV Q+
Sbjct: 117 TGSEALKKRQQ-VKRLSTGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQL 175
Query: 101 PVEFGGLGGKAIYIGKCLGF----------------------------YTEQSAV--INY 130
PV GG GGK +YI F YT + + I
Sbjct: 176 PVSKGGGGGKTVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITA 235
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187
L K + E++ +VI+DS+ FR F +LA R + L L LA +F+LA+
Sbjct: 236 LPKLMVENQ-FSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFV 294
Query: 188 PN 189
N
Sbjct: 295 TN 296
>gi|76801091|ref|YP_326099.1| DNA repair and recombination protein RadA [Natronomonas pharaonis
DSM 2160]
gi|76556956|emb|CAI48530.1| DNA repair and recombination protein RadA [Natronomonas pharaonis
DSM 2160]
Length = 345
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL GY S SI AS +++S G A D++Q
Sbjct: 7 DLEELPGVGPATADKLRENGYDSYQSIAVASPAELSNTADIGESNANDIIQAAREAADIG 66
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+ +E + ++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNV
Sbjct: 67 GFETGADVLDRREQIGKLEWLIPEIDEMLGGGVETQSITEVYGEFGAGKSQVTHQLAVNV 126
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G+ +++ F E+
Sbjct: 127 QLPEEAGGLHGRCVFVDSEDTFRPER 152
>gi|403217708|emb|CCK72201.1| hypothetical protein KNAG_0J01200 [Kazachstania naganishii CBS
8797]
Length = 478
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT LD +L GGI + +TEI G GK+QL +Q+A++VQ+P + GLGGK +YI
Sbjct: 87 FTTGDVTLDELLNGGIYTQSITEIFGASSTGKSQLLMQMALSVQLPRQTNGLGGKCVYIT 146
Query: 116 KCLGFYTEQ-SAVINYLDKFVS-------------------EH--------------KDV 141
T++ +I D+F EH D+
Sbjct: 147 TEGDLPTKRLEEMIASRDEFTENCVSQKNIFTVSCNDLMNQEHILNVQLPVLLERNAGDI 206
Query: 142 KVVIIDSIAFHFRHGFVDLALRTR-----VLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R V+ + + + +A L+++A K+ +A++ N + +
Sbjct: 207 KLVIIDSISHHLRVELVNKSYQEAQENKFYIDQLAESLLSIATKYDIAIVVANQVSDKPV 266
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
+ +S +R+ + QLG+++
Sbjct: 267 IDP------NSLTRQFITDFDYQLGYMV 288
>gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina
acetivorans C2A]
gi|34395790|sp|Q8TK71.1|RADA_METAC RecName: Full=DNA repair and recombination protein RadA
gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A]
Length = 325
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIINSARQAADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+ E GGL G I
Sbjct: 79 VGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLAVNVQMDKEHGGLDGSVI 138
Query: 113 YIGKCLGFYTEQ 124
I F E+
Sbjct: 139 IIDTENTFRPER 150
>gi|209944588|gb|ACI96525.1| spindle D [Drosophila melanogaster]
gi|209944592|gb|ACI96527.1| spindle D [Drosophila melanogaster]
gi|209944598|gb|ACI96530.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|209944572|gb|ACI96517.1| spindle D [Drosophila melanogaster]
gi|209944584|gb|ACI96523.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|426233576|ref|XP_004010792.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Ovis aries]
Length = 350
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEE--QESLARITTSCADL 63
L +S + K+ Y ++ + S + QTA+++ + S A ++T+ L
Sbjct: 31 LCLSPLELMKMTGLSYQAVHELLCVVSRACAPQMQTAYEIKTQRCAAHSSAFLSTTLPAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAE 150
Query: 124 ------QSAVINYLD---------------------------KFVSEH---KDVKVVIID 147
+S Y D + + E K VK+VIID
Sbjct: 151 RLVEIAESRFPRYFDTEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKGVKLVIID 210
Query: 148 SIAFHFRHGFVDLAL------RTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
S+A R F D L R + L+ A L LA++FS+ ++ N TT
Sbjct: 211 SVASVVRKEF-DTQLQGNVRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|349745394|gb|AEQ16523.1| meiotic recombination protein DMC1 [Zea mays]
Length = 344
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +++G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLNQGFMTGNDLLLK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQVPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ K++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFKLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
PT]
gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
PT]
Length = 322
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 65/229 (28%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAW----------------------DMLQEEQES 52
KL AG+T++ ++ AS ++ + D + E ++
Sbjct: 17 KLREAGFTTIEAVAVASPGELVAAAEVGEATAAKIIAAAREAADIGGFETGDQVLERRKL 76
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT + D +LGGG+ + + E+ G G GKTQ+ QLAVNVQ+P E GGL G AI
Sbjct: 77 VGKITTGSRNFDELLGGGMETQAIVELYGEFGSGKTQVAHQLAVNVQLPPELGGLNGSAI 136
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEHK------------ 139
I F E+ + I+ + S H+
Sbjct: 137 IIDTENTFRPERISQMVMGLRAIDDREWRPEDFLKNIHVARAYNSNHQILLAESAMELAE 196
Query: 140 -------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
V+++I+DS+ HFR +V LA R + L+ LM A
Sbjct: 197 SLRETEHPVRLLIVDSVTAHFRAEYVGRGTLADRQQKLNKHLHDLMRFA 245
>gi|222615516|gb|EEE51648.1| hypothetical protein OsJ_32955 [Oryza sativa Japonica Group]
Length = 391
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5]
Length = 315
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 57/215 (26%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDI----SRGTQTAWDMLQEEQES--- 52
M++ +LP + KL AG+ SL +I AS +++ G T+ ++ +E+
Sbjct: 1 MDIEELPGVGPAIAEKLREAGFNSLEAIAVASPAELVAAAEIGEATSAKIINAAREAAEI 60
Query: 53 ---------------LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
+ ++TT D++LGGG+ + +TE G G GKTQ+ Q+AVN
Sbjct: 61 GGFETGDKILGRRLEIGKLTTGSTSFDDLLGGGLETQALTEFYGEFGSGKTQIAHQIAVN 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAV 127
VQ+P E GGL G I I F E Q +
Sbjct: 121 VQLPPENGGLNGSVIIIDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILL 180
Query: 128 INYLDKFVSE----HKDVKVVIIDSIAFHFRHGFV 158
++ ++ E K V+++I+DS HFR +V
Sbjct: 181 VDKAERLAEELIDTEKPVRLLIVDSATAHFRSEYV 215
>gi|17944958|gb|AAL48542.1| RE02671p [Drosophila melanogaster]
Length = 341
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKT+L +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|344273519|ref|XP_003408569.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Loxodonta africana]
Length = 386
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 43/197 (21%)
Query: 40 QTAWDMLQEEQESL--ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA+ M + L A ++T+ + LD L GG+ C +TEI G PG GKTQ I ++V
Sbjct: 65 QTAFRMKTQRSADLSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSVL 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEH---------------- 138
+P GGL G YI F E+ I + + F +E
Sbjct: 125 ATLPTNMGGLEGAVAYIDTESAFSAERLVEIAESRFPEYFNTEEKLLLTSSKVHLYRELT 184
Query: 139 -----------------KDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMN 176
K VK+VIIDS+A R F ++ R++ L+ A L
Sbjct: 185 CDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMKERSKFLAREAASLKY 244
Query: 177 LAKKFSLALLEPNLATT 193
LA++FS+ ++ N TT
Sbjct: 245 LAEEFSIPVILTNQITT 261
>gi|449274710|gb|EMC83788.1| DNA repair protein RAD51 like protein 2, partial [Columba livia]
Length = 253
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 43/223 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQ--ESLARITTSCADL 63
L +S + K+ Y + + S + QTA++M ++ S A ++T+ L
Sbjct: 31 LCLSLLELMKVTGQSYYDVQKLLCKVSRACAPKMQTAYEMKLKKSVSPSSAFLSTTLHSL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D +L GG+ C +TEI PG GKTQ I ++V +P+ GGL G IYI F E
Sbjct: 91 DKVLHGGVPCGSLTEITSPPGCGKTQFCIMMSVLATLPLSMGGLNGAVIYIDTESAFSAE 150
Query: 124 Q------SAVINYLD---------KFVSEHKD---------------------VKVVIID 147
+ + + Y D + V ++D VK++IID
Sbjct: 151 RLIEIAGNRLPTYFDSDEKLFCMTRSVHVYRDLTCGSVLKRIMSLEEEIISKKVKLIIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLAL 185
S+A R F +LA R+ L+ A L LA++FS+ +
Sbjct: 211 SVASVVRKEFDTKLQGNLAERSNFLARGASMLKYLAEEFSIPV 253
>gi|297298124|ref|XP_001108071.2| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Macaca
mulatta]
Length = 523
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQE--SLARITTSCADLDN 65
+S + K+ Y + + S + QTA+++ + S A ++T+ + LD
Sbjct: 185 LSPLELMKMTGLSYRGVHELLRMVSRACAPKMQTAYEIKAQRSADFSPAFLSTTLSALDE 244
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ- 124
L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E+
Sbjct: 245 ALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTHMGGLEGAVVYIDTESAFSAERL 304
Query: 125 ---------------------------------SAVINYLDKFVSE--HKDVKVVIIDSI 149
V+ ++ E K +K+VIIDS+
Sbjct: 305 VEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVIIDSV 364
Query: 150 AFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
A R F +L R + L+ A L LA++FS+ ++ N TT
Sbjct: 365 ASVVRKEFDTQLQGNLKERNKFLAREACSLKYLAEEFSIPVILTNQITT 413
>gi|325188579|emb|CCA23112.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
Length = 343
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 46/194 (23%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
QTA ++LQE E + +I T LD +LGGG+ EV EI G PG+GKTQ I + +
Sbjct: 74 QTARELLQE-AEKIPKIPTRLIGLDRLLGGGLTRGEVMEICGGPGLGKTQFAIHVCLASS 132
Query: 100 IPVEFGGLGGKAIYIGKCLGF--------------------------------------- 120
+P G++IYI F
Sbjct: 133 VP-----FKGRSIYIDSEGSFVIERVAQMAAHFVEDYKLPGEEISTRDDILRSIHYYRVH 187
Query: 121 -YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAK 179
Y EQ VI L + + + ++IDS+AFH RH F D R R A+KL LA+
Sbjct: 188 DYVEQMQVIQSLFNVLRQDPKICTLVIDSLAFHLRHSFEDTGARARATESAAIKLHELAR 247
Query: 180 KFSLALLEPNLATT 193
+F + + N TT
Sbjct: 248 EFRIVVFIVNYMTT 261
>gi|226501424|ref|NP_001141379.1| meiotic recombination protein DMC1 isoform 1 [Zea mays]
gi|194698360|gb|ACF83264.1| unknown [Zea mays]
gi|194704244|gb|ACF86206.1| unknown [Zea mays]
gi|195626386|gb|ACG35023.1| meiotic recombination protein DMC1 [Zea mays]
gi|414882036|tpg|DAA59167.1| TPA: meiotic recombination protein DMC1 isoform 1 [Zea mays]
gi|414882037|tpg|DAA59168.1| TPA: meiotic recombination protein DMC1 isoform 2 [Zea mays]
Length = 344
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +++G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLNQGFMTGNDLLLK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ K++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFKLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|224142257|ref|XP_002324475.1| predicted protein [Populus trichocarpa]
gi|222865909|gb|EEF03040.1| predicted protein [Populus trichocarpa]
Length = 290
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 83/193 (43%), Gaps = 49/193 (25%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T +L E+ SL C LD +GGGI C +TEI G GKTQL +QL++ Q+
Sbjct: 2 TPQKLLPVEKCSLG-----CPILDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRAQL 56
Query: 101 PVEFGGLGGKAIYIGKCLGFYTE--------------QSAVINY---------------- 130
P GGL ++Y+ F T Q V NY
Sbjct: 57 PPFLGGLSASSLYLYTEFPFPTRRLHQLSSALQCQYPQIFVSNYDPCDSIFLQSVNTADQ 116
Query: 131 -------LDKFVSEHK---DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMN 176
++ F+ K V+V++IDS+A FR F DL R+ + I+ KL
Sbjct: 117 LLDIMPQVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKE 176
Query: 177 LAKKFSLALLEPN 189
AK+F+L +L N
Sbjct: 177 FAKRFNLVVLVTN 189
>gi|18461375|gb|AAL71908.1|AF265549_1 meiotic protein Dmc1B [Oryza sativa Indica Group]
Length = 344
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|14669856|dbj|BAB62025.1| RiLIM15B [Oryza sativa]
Length = 344
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAKRQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|346703397|emb|CBX25494.1| hypothetical_protein [Oryza glaberrima]
Length = 397
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 33/206 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPNLATTANL 196
+L +A++F++A+ N + L
Sbjct: 255 LSRLTKIAEEFNVAVYITNQGVLSGL 280
>gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
5]
gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
5]
Length = 358
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 33/197 (16%)
Query: 26 SICSASSSDISRGTQ-TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+I ++ ++RG + L E+++++ I+T LD++L GGI +TE G G
Sbjct: 95 AIIRSAQRLVNRGEEFITAKTLFEKRKNIEYISTGVRSLDDLLEGGIEVGSITEFIGEFG 154
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIY--------------IGKCLGFYTEQS-AVIN 129
GKTQ+ QL+V VQ+P + GGL +A+Y I + G E++ I
Sbjct: 155 AGKTQICHQLSVMVQLPKDKGGLNARALYVDTEGTFRPERIVQIARARGLDPEKTLENII 214
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIAL 172
Y + S+H+ +++++I+DS+ HFR G +LA R + L+
Sbjct: 215 YARAYNSDHQMLLIDEAKKYIEKYNIRLIIVDSLINHFRAEYPGRENLASRQQKLNKHIS 274
Query: 173 KLMNLAKKFSLALLEPN 189
+L LA ++LA++ N
Sbjct: 275 QLHRLASLYNLAVVVTN 291
>gi|71754847|ref|XP_828338.1| recombinase Rad51 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833724|gb|EAN79226.1| recombinase Rad51, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 507
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + + +TT C LD +LGGG+ +TEI G PG+GKTQL +QLAVN +P E GGL
Sbjct: 98 EATKGIENVTTLCRSLDILLGGGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGL 157
Query: 108 GGKAIYIGKCLGFYTEQ-----SAVINYLDKFV 135
G ++I F E+ SA + ++ + V
Sbjct: 158 QGGCLFIDTEGSFLPERFREIASAAVGHVREIV 190
>gi|448503151|ref|ZP_21612918.1| DNA repair and recombination protein RadA [Halorubrum coriense DSM
10284]
gi|445693160|gb|ELZ45320.1| DNA repair and recombination protein RadA [Halorubrum coriense DSM
10284]
Length = 343
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVDNGFESYQSIAVASPGEMSNTADIGESSAADIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERREEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+ E GGL G I++ F E +
Sbjct: 125 QLEPENGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPSDKEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELADRQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|261334168|emb|CBH17162.1| recombinase rad51, putative [Trypanosoma brucei gambiense DAL972]
Length = 507
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + + +TT C LD +LGGG+ +TEI G PG+GKTQL +QLAVN +P E GGL
Sbjct: 98 EATKGIENVTTLCRSLDILLGGGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGL 157
Query: 108 GGKAIYIGKCLGFYTEQ-----SAVINYLDKFV 135
G ++I F E+ SA + ++ + V
Sbjct: 158 QGGCLFIDTEGSFLPERFREIASAAVGHVREIV 190
>gi|449466133|ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
Length = 294
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 42/180 (23%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
++ + T C +D +GGG+ C +TEI G GKTQL +QL++ Q+P+ GGL
Sbjct: 11 QTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNAS 70
Query: 111 AIYIGKCLGF------------------YTEQSAVINYLDKFVSEHK------------- 139
++YI F ++ S I +++ S H+
Sbjct: 71 SLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHI-FVEPVHSAHQLFDIMPKIESSLE 129
Query: 140 ------DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++++IDSIA FR F DL R+ + I+ KL LAKK+SLA++ N
Sbjct: 130 NRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTN 189
>gi|115484153|ref|NP_001065738.1| Os11g0146800 [Oryza sativa Japonica Group]
gi|21322144|gb|AAK55555.2|AF375982_1 Dmc1 [Oryza sativa Japonica Group]
gi|14588672|dbj|BAB61838.1| RiLIM15B [Oryza sativa]
gi|18700485|dbj|BAB85214.1| DMC1 [Oryza sativa Japonica Group]
gi|21805945|gb|AAM76792.1| Dmc1 protein type B [Oryza sativa Indica Group]
gi|113644442|dbj|BAF27583.1| Os11g0146800 [Oryza sativa Japonica Group]
Length = 344
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|134079842|emb|CAK40975.1| unnamed protein product [Aspergillus niger]
Length = 334
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + RI+T D+ILGGG ++E+ G GKTQL ++V Q+P E GG
Sbjct: 87 HQRKRIVRISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELGGA 146
Query: 108 GGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------------- 139
GGK YI F E+ A I Y SEH+
Sbjct: 147 GGKVAYIDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAG 206
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 207 GEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNICVLMTN 260
>gi|195349890|ref|XP_002041475.1| GM10376 [Drosophila sechellia]
gi|194123170|gb|EDW45213.1| GM10376 [Drosophila sechellia]
Length = 270
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 43/203 (21%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKVERQYAQRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LHKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ + L ++ LA + N+ T
Sbjct: 198 LHESMRRLQRQHELAWVFTNVLT 220
>gi|195574316|ref|XP_002105135.1| GD21329 [Drosophila simulans]
gi|194201062|gb|EDX14638.1| GD21329 [Drosophila simulans]
Length = 267
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 43/203 (21%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ + L ++ LA + N+ T
Sbjct: 198 LHESMRRLQRQHELAWVFTNVLT 220
>gi|253741848|gb|EES98708.1| Dmc1b [Giardia intestinalis ATCC 50581]
Length = 368
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + R++T C D + +LGGG+ +TE+ G GKTQL LAV Q+PV GG
Sbjct: 123 KKRAQVKRLSTGCTDFNTLLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGG 182
Query: 108 GGKAIYIGKCLGFYTEQSAVI-------------NYLDKFVSEHK--------------- 139
GGK +YI F E+ A I N + V H+
Sbjct: 183 GGKTVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIIVARVYTHEQQIECITALPKLMIE 242
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+VIIDSI FR F +LA R + L L LA +F+LA+ N
Sbjct: 243 SQFALVIIDSITALFRVDFTGRGELADRQQKLGQHLAGLAKLADEFNLAIFVTN 296
>gi|300708476|ref|XP_002996416.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
gi|239605717|gb|EEQ82745.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01]
Length = 336
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
++ L RI+T D D++LGGGI +TE+ G GKTQL + + VQ+ E GG
Sbjct: 90 KRSQLFRISTGSTDFDSLLGGGIQTMSITEMFGEFRTGKTQLATTMCITVQLSEEEGGAK 149
Query: 109 GKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHKD------------- 140
GKA +I F E+ A+ N Y + SEH++
Sbjct: 150 GKAAFIDTEGTFRPERLREIANRFNIDPDEALDNIIYARAYNSEHQNELVQQLAVKFAED 209
Query: 141 --VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K+++IDSI FR F +L R + L+ KL+N++++F++A+L N
Sbjct: 210 SKYKLLVIDSIISLFRVDFSGRGELGERQQKLNQFLSKLINISEEFNIAVLITN 263
>gi|197092367|gb|ACH42256.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
gi|222154115|gb|ACM47237.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
Length = 344
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQTLDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|390481075|ref|XP_003736065.1| PREDICTED: DNA repair protein RAD51 homolog 3-like, partial
[Callithrix jacchus]
Length = 88
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 112 IYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171
IY +C YTE A + L F+SEH V++VI+D IAF FRH DL+LRTR+L+G+A
Sbjct: 17 IYYFRCCD-YTELLAQVYLLPDFLSEHSQVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLA 75
Query: 172 LKLMNLAKKFSLA 184
++++LA LA
Sbjct: 76 QQMISLANNHRLA 88
>gi|412987893|emb|CCO19289.1| DNA repair protein RAD51 homolog 1 [Bathycoccus prasinos]
Length = 321
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+E ++ + RITT +D +L GGI R +TEI G GKTQL LAV+ Q+P E G
Sbjct: 75 FREMRKDVVRITTGSKAVDEVLAGGIQTRSITEIHGEWRCGKTQLCHTLAVSTQLPFEMG 134
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHKD---------- 140
G K YI F +E+ AV+ + F E +
Sbjct: 135 GGYAKVAYIDTEGTFRSERILEIAERYGMDGEAVLENIMIARTFTHEQMEDALLAIAGKM 194
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K++I+DS+ H+R F +L+ R + L KL LA +F+LA++ N
Sbjct: 195 AEEPFKLLIVDSVMAHYRVDFTGRGELSGRQQRLGQFMSKLSKLADEFNLAIVCTN 250
>gi|440897351|gb|ELR49062.1| DNA repair protein RAD51-like protein 2, partial [Bos grunniens
mutus]
Length = 373
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEE--QESLARITTSCADL 63
L +S + K+ Y + + S + QTA+++ + S A ++T+ + L
Sbjct: 31 LCLSPLELMKMTGLSYQGVHELLCLVSRACAPQMQTAYEIKTQRCAAHSSAFLSTTLSAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAE 150
Query: 124 ------QSAVINYLD---------------------------KFVSEH---KDVKVVIID 147
+S Y D + + E K VK+VIID
Sbjct: 151 RLVEIAESRFPRYFDTEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKGVKLVIID 210
Query: 148 SIAFHFRHGFVDLAL------RTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
S+A R F D L R + L+ A L LA++FS+ ++ N TT
Sbjct: 211 SVASVVRKEF-DTQLQGNVRERNKFLAREAASLKYLAEEFSIPVILTNQITT 261
>gi|317033565|ref|XP_001395134.2| meiotic recombination protein DMC1 [Aspergillus niger CBS 513.88]
Length = 337
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + RI+T D+ILGGG ++E+ G GKTQL ++V Q+P E GG
Sbjct: 90 HQRKRIVRISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELGGA 149
Query: 108 GGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------------- 139
GGK YI F E+ A I Y SEH+
Sbjct: 150 GGKVAYIDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAG 209
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 210 GEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNICVLMTN 263
>gi|390355303|ref|XP_003728518.1| PREDICTED: DNA repair protein XRCC3-like [Strongylocentrotus
purpuratus]
Length = 355
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 40/192 (20%)
Query: 47 QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
QE+++ +TT C LD L GGI + +TEI G GKTQL +QL + Q+PV+ GG
Sbjct: 72 QEDRKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGG 131
Query: 107 LGGKAIYIGKCLGFYTEQ-------------SAVINYL---DKFVSEH---KD------- 140
L +YI F +++ A+ L D EH KD
Sbjct: 132 LANGVVYICTEDVFPSKRLQQLISSFNRRIGPALAKQLAVGDHIYVEHAAEKDQLWHCLE 191
Query: 141 -----------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKFSLALLE 187
VK+ ++DS+A FR F D R R L + L L+ +F++A++
Sbjct: 192 KRLPLLLSRGMVKLAVVDSLAAIFRSEFELRDTIRRARELQRVGAHLHRLSSQFNVAVVC 251
Query: 188 PNLATTANLAES 199
N TAN+ S
Sbjct: 252 VN-QVTANMEAS 262
>gi|209946388|gb|ACI97425.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YXXYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|115754819|ref|XP_790563.2| PREDICTED: DNA repair protein XRCC3-like [Strongylocentrotus
purpuratus]
Length = 355
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 40/192 (20%)
Query: 47 QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
QE+++ +TT C LD L GGI + +TEI G GKTQL +QL + Q+PV+ GG
Sbjct: 72 QEDRKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGG 131
Query: 107 LGGKAIYIGKCLGFYTEQ-------------SAVINYL---DKFVSEH---KD------- 140
L +YI F +++ A+ L D EH KD
Sbjct: 132 LSNGVVYICTEDVFPSKRLQQLISSFNSKIGPALAKQLAVGDHIYVEHAAEKDQLWHCLE 191
Query: 141 -----------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKFSLALLE 187
VK+ ++DS+A FR F D R R L + L L+ +F++A++
Sbjct: 192 KRLPLLLSRGMVKLAVVDSLAAIFRSEFELRDTIRRARELQRVGAHLHRLSSQFNVAVVC 251
Query: 188 PNLATTANLAES 199
N TAN+ S
Sbjct: 252 VN-QVTANMKAS 262
>gi|384501022|gb|EIE91513.1| hypothetical protein RO3G_16224 [Rhizopus delemar RA 99-880]
Length = 207
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 19/146 (13%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQ--------ESLARIT 57
LP SA+ +L+ +S+ S+ A+S + A+D EQ ES +T
Sbjct: 30 LPRSASDLQRLLQLDPSSVESVLDAASIE-------AYDWRLREQVGNELIGIESQTMLT 82
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
T D+IL GGI +TE+ G GKTQLG+QL ++VQ P+ GGL G A+YI
Sbjct: 83 TGDEIFDDILKGGIPLGTITEVVGESSSGKTQLGLQLCLSVQKPILEGGLEGSAVYIHSE 142
Query: 118 LGFYTEQSAVINYL-DKFVSEHKDVK 142
F SA +N L DK+ S++ +++
Sbjct: 143 GPF---PSARLNQLVDKYTSDNNNLE 165
>gi|62859281|ref|NP_001016141.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Xenopus (Silurana) tropicalis]
gi|110645694|gb|AAI18906.1| xrcc3 protein [Xenopus (Silurana) tropicalis]
Length = 348
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 1 MEVSKLPISATQRGKLISAG------YTSLSSICSASSSDISRGTQ------------TA 42
+EVS I+A ++ + SAG L + + S +D+ + TA
Sbjct: 6 LEVSPRIIAAVKKANIKSAGNILTLSVPELQKLANLSVADVHHLQRAVSAVLRKNLGVTA 65
Query: 43 WDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+ E+ + A +++ C LDN L GG+ +TEI G GKTQ+G+QL ++VQ
Sbjct: 66 LQIYSEKAKFPAQHQKLSLGCKVLDNFLRGGVPLVGITEIAGESSAGKTQIGLQLCLSVQ 125
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFV-SEHK---DVKVVIIDSIAF 151
PVE+GGL A+YI C TE + L + + S+HK DV +I +I F
Sbjct: 126 YPVEYGGLASGAVYI--C----TEDAFPSKRLQQLIKSQHKLRSDVPTEVIKNIRF 175
>gi|222154111|gb|ACM47235.1| disrupted meiotic cDNA 1 protein [Triticum aestivum]
Length = 344
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|300797883|ref|NP_001180066.1| DNA repair protein RAD51 homolog 2 [Bos taurus]
gi|296483014|tpg|DAA25129.1| TPA: RAD51-like 1 isoform 1 [Bos taurus]
Length = 364
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEE--QESLARITTSCADL 63
L +S + K+ Y + + S + QTA+++ + S A ++T+ + L
Sbjct: 45 LCLSPLELMKMTGLSYQGVHELLCLVSRACAPQMQTAYEIKTQRCAAHSSAFLSTTLSAL 104
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 105 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAE 164
Query: 124 ------QSAVINYLD---------------------------KFVSEH---KDVKVVIID 147
+S Y D + + E K VK+VIID
Sbjct: 165 RLVEIAESRFPRYFDTEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKGVKLVIID 224
Query: 148 SIAFHFRHGFVDLAL------RTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
S+A R F D L R + L+ A L LA++FS+ ++ N TT
Sbjct: 225 SVASVVRKEF-DTQLQGNVRERNKFLAREAASLKYLAEEFSIPVILTNQITT 275
>gi|7229683|gb|AAF42940.1|AF234170_1 DMC1 protein [Hordeum vulgare]
gi|326513156|dbj|BAK06818.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|400202051|gb|AFP73609.1| disrupted meiotic cDNA1 protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|308161798|gb|EFO64232.1| Dmc1b [Giardia lamblia P15]
Length = 368
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++E + R++T CAD + +LGGG+ +TE+ G GKTQL LAV Q+PV GG
Sbjct: 123 KKREQVKRLSTGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGG 182
Query: 108 GGKAIYIGKCLGF----------------------------YTEQSAV--INYLDKFVSE 137
GK +YI F YT + + I L K + E
Sbjct: 183 AGKTVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMIE 242
Query: 138 HKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++ +VI+DS+ FR F +LA R + L L LA +F+LA+ N
Sbjct: 243 NQ-FSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAIFVTN 296
>gi|357160971|ref|XP_003578935.1| PREDICTED: meiotic recombination protein DMC1 homolog [Brachypodium
distachyon]
Length = 345
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 135
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 136 FRSGKTQLAHTLCVSTQLPLHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 195
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 196 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 255
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 256 LSRLTKIAEEFNVAVYITN 274
>gi|871832|dbj|BAA08255.1| recA-like protein [Arabidopsis thaliana]
Length = 342
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++ + +ITT C LD++LGGGI +TE G
Sbjct: 76 KVDKICEAAEKIVNFGYMTGSDALIK-RKLVVKITTGCQALDDLLGGGIETSAITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V Q+P G GK YI F ++ AV++
Sbjct: 135 FRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DSI FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 255 LSRLIKIAEEFNVAVYMTN 273
>gi|13161942|emb|CAC32998.1| putative DMC1 protein [Pleurotus ostreatus]
gi|13171056|emb|CAC33176.1| DMC1 homologue [Pleurotus ostreatus]
Length = 347
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+QE+++ + I+T ++D ILGGGI + V+E+ G GKTQL ++V Q+P + G
Sbjct: 100 IQEKRKRVNTISTGSKNVDVILGGGIMSQSVSEVYGEFRTGKTQLAHTMSVVAQLPPDLG 159
Query: 106 GLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH------------ 138
G GK YI F ++ I Y F SEH
Sbjct: 160 GASGKVAYIDTEGTFRPDRIRSIAERFGVDGSLALENILYARAFNSEHQMELINECSMRF 219
Query: 139 ---KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD +++I+DSI FR G +L+ R + L+ + +L L++++++A+L N
Sbjct: 220 AEDKDFRLLIVDSIMALFRVDYSGRGELSERQQKLAQMLSRLTKLSEEYNIAVLLTN 276
>gi|224051777|ref|XP_002200331.1| PREDICTED: DNA repair protein XRCC3 [Taeniopygia guttata]
Length = 347
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 43/199 (21%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+++ C+ LDN+L GGI +TE+ G GKTQ+G+QL + VQ P ++GGL A+YI
Sbjct: 81 KLSLGCSVLDNLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYKYGGLESGAVYI 140
Query: 115 -------GKCL--------------------------GFYTEQSAVINYLDKFVSEHKD- 140
K L + EQ+A ++ + ++
Sbjct: 141 CTEDVFPSKRLQQLIDQQHKLRADVPAEIIQKIRFGNSIFVEQAADLDTFQQCITRRLSL 200
Query: 141 ------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
V++V+IDS+A FR F + AL+ R L +L +L+ +F ++ N T
Sbjct: 201 LLARGMVRLVVIDSMAALFRSEFGPAEAALKARYLQTFGAQLHSLSTRFRTPIVCINQVT 260
Query: 193 TA-NLAESCLTCLRDSGSR 210
A + +E+ R GSR
Sbjct: 261 DAVSESEAAQCSWRAVGSR 279
>gi|448427041|ref|ZP_21583594.1| DNA repair and recombination protein RadA [Halorubrum terrestre JCM
10247]
gi|448451662|ref|ZP_21592962.1| DNA repair and recombination protein RadA [Halorubrum litoreum JCM
13561]
gi|448483660|ref|ZP_21605807.1| DNA repair and recombination protein RadA [Halorubrum arcis JCM
13916]
gi|448514235|ref|ZP_21616987.1| DNA repair and recombination protein RadA [Halorubrum distributum
JCM 9100]
gi|448526085|ref|ZP_21619703.1| DNA repair and recombination protein RadA [Halorubrum distributum
JCM 10118]
gi|445679088|gb|ELZ31569.1| DNA repair and recombination protein RadA [Halorubrum terrestre JCM
10247]
gi|445692903|gb|ELZ45072.1| DNA repair and recombination protein RadA [Halorubrum distributum
JCM 9100]
gi|445699285|gb|ELZ51316.1| DNA repair and recombination protein RadA [Halorubrum distributum
JCM 10118]
gi|445810518|gb|EMA60543.1| DNA repair and recombination protein RadA [Halorubrum litoreum JCM
13561]
gi|445820675|gb|EMA70484.1| DNA repair and recombination protein RadA [Halorubrum arcis JCM
13916]
Length = 343
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVDNGFESYQSIAVASPGEMSNTADIGESSASDIINAAREAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E ++ + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERRQEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE-----------------------------QSAVIN 129
Q+ E GGL G I++ F E + A+ +
Sbjct: 125 QLSKENGGLEGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPNDEEALED 184
Query: 130 YLDKFVS-------------------------EHKD----VKVVIIDSIAFHFRHGFV-- 158
+D F+ EH++ +++V +DS+ HFR +V
Sbjct: 185 LVDAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM L ++ A+L N
Sbjct: 245 GELAERQQKLNKHLHDLMRLGDLYNTAILVTN 276
>gi|242064614|ref|XP_002453596.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
gi|241933427|gb|EES06572.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor]
Length = 344
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +++G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLNQGFMTGTDLLLK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|440802621|gb|ELR23550.1| meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str.
Neff]
Length = 353
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 33/184 (17%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T +ML + +E + RIT C LD +LGGG+ +TE+ G GKTQL L V Q+
Sbjct: 102 TGSEMLNKRKE-VVRITMGCTALDQLLGGGVETMSITEVFGEFRTGKTQLCHTLCVTTQL 160
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK------ 139
P+ G GK YI F E+ +A+ N Y F EH+
Sbjct: 161 PLNMSGGNGKVAYIDTEGTFRPERIKPIAERFGLDPMAALDNIVYARAFTHEHQLELIVQ 220
Query: 140 --------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188
+++I+DSI FR G +LA R + L + KL +A++F++A+
Sbjct: 221 IAAKMVEDQYRLLIVDSITALFRVDYSGRGELAERQQKLGRMLSKLQKIAEEFNVAVFIT 280
Query: 189 NLAT 192
N T
Sbjct: 281 NQVT 284
>gi|448351033|ref|ZP_21539843.1| DNA repair and recombination protein RadA [Natrialba taiwanensis
DSM 12281]
gi|445635221|gb|ELY88392.1| DNA repair and recombination protein RadA [Natrialba taiwanensis
DSM 12281]
Length = 343
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ A+ +++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSFQSLAVAAPAELSNTADVGDSTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+ VNV
Sbjct: 65 GFETGSTVLERRNKIGKLSWQIDEVDELLGGGIETQSITEVYGEFGAGKSQVTHQMVVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G A+++ F E+
Sbjct: 125 QLPKEVGGLHGAAMFVDSEDTFRPER 150
>gi|332376244|gb|AEE63262.1| unknown [Dendroctonus ponderosae]
Length = 257
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 32/136 (23%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
E RI+ C +LD +L GGI + E+ G G+GKTQL +QLA+ +Q+PV GG G +
Sbjct: 20 EPCHRISIGCTNLDGLLNGGIPVNGINELYGCSGVGKTQLCLQLALQIQLPVHLGGKGQE 79
Query: 111 AIYIGK------------CLGFYTEQSAVINYLDKFVSEH-------------------- 138
+YI F ++ + I + D+ EH
Sbjct: 80 VVYICTEDVFPSKRLIQLACAFRSKYNVDICFEDRIYIEHIPNFVRLQKCLNLLPQFLLG 139
Query: 139 KDVKVVIIDSIAFHFR 154
K V ++IIDSIA FR
Sbjct: 140 KKVGLIIIDSIAGLFR 155
>gi|281349378|gb|EFB24962.1| hypothetical protein PANDA_005235 [Ailuropoda melanoleuca]
Length = 253
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 43/223 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+ M SL A + T+ + L
Sbjct: 31 LCLSPLELMKMTGLSYGGVHELLCMVSRACAPQMQTAYGMKMRTSASLSPAFLATTLSAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAE 150
Query: 124 Q----------------------------------SAVINYLDKFVSE--HKDVKVVIID 147
+ V+ +D E K VK+VIID
Sbjct: 151 RLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELSCDEVLRRIDSLEEEIISKGVKLVIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLAL 185
S+A R F ++ R + L+ A L LA++FS+ +
Sbjct: 211 SVASVVRKEFDTQLQGNMRERNKFLAREAASLKYLAEEFSIPV 253
>gi|448363964|ref|ZP_21552558.1| DNA repair and recombination protein RadA [Natrialba asiatica DSM
12278]
gi|445644852|gb|ELY97859.1| DNA repair and recombination protein RadA [Natrialba asiatica DSM
12278]
Length = 343
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
++ +LP + KL AG+ S S+ A+ +++S G TA D++
Sbjct: 5 DLEELPGVGPATADKLHDAGFDSFQSLAVAAPAELSNTADVGDSTAADIVNAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E + + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+ VNV
Sbjct: 65 GFETGSTVLERRNKIGKLSWQIDEVDELLGGGIETQSITEVYGEFGAGKSQVTHQMVVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGL G A+++ F E+
Sbjct: 125 QLPKEVGGLHGAAMFVDSEDTFRPER 150
>gi|209944578|gb|ACI96520.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|209944576|gb|ACI96519.1| spindle D [Drosophila melanogaster]
gi|209944602|gb|ACI96532.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|343466351|gb|AEM43047.1| RAD51C-3 [Oryza sativa]
Length = 124
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 36/114 (31%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICS------------------------------- 29
ME++ LPI+ + R L++AGY+SL+++ +
Sbjct: 1 MEIADLPIATSHRANLLAAGYSSLAALSAASPPRLARDLSIEVHEAEEILKVAVGANKSK 60
Query: 30 ----ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEI 79
S+S + +G Q AWDML +EQ S I T ADL+NILGGGI C+EVTEI
Sbjct: 61 GADGPSTSSVLKGVQNAWDMLSDEQ-SRRHINTGSADLNNILGGGIHCKEVTEI 113
>gi|18461373|gb|AAL71907.1|AF265548_1 meiotic protein Dmc1A [Oryza sativa Indica Group]
Length = 344
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|21805949|gb|AAM76793.1| Dmc1 protein type A [Oryza sativa Indica Group]
Length = 344
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAKRQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|18389304|dbj|BAB84121.1| OsDmc1 protein [Oryza sativa Japonica Group]
Length = 344
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ + +I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRPLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|209944566|gb|ACI96514.1| spindle D [Drosophila simulans]
Length = 212
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI V E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHVVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRXLQRQHELA 212
>gi|448406909|ref|ZP_21573341.1| DNA repair and recombination protein RadA [Halosimplex carlsbadense
2-9-1]
gi|445676715|gb|ELZ29232.1| DNA repair and recombination protein RadA [Halosimplex carlsbadense
2-9-1]
Length = 348
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 19 AGYTSLSSICSASSSDISRGTQTAWDM--------LQEEQESLARITTSCADLDNILGGG 70
A ++ + I +S++DI + A D+ + E +E + ++T S ++D++LGGG
Sbjct: 37 AELSNTADIGESSAADIINAARDAADIGGFETGATVLERREQIGKLTWSVDEVDDLLGGG 96
Query: 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
I + +TE+ G G GK+Q+ Q++V VQ+P E GGL G A++I F E+
Sbjct: 97 IETQSITEVYGEFGAGKSQVTHQISVTVQLPSEHGGLEGSAMFIDSEDTFRPER 150
>gi|218186424|gb|EEC68851.1| hypothetical protein OsI_37443 [Oryza sativa Indica Group]
Length = 396
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|118151310|ref|NP_001071585.1| DNA repair protein XRCC3 [Bos taurus]
gi|122132264|sp|Q08DH8.1|XRCC3_BOVIN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|115304929|gb|AAI23743.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Bos taurus]
gi|296475234|tpg|DAA17349.1| TPA: DNA repair protein XRCC3 [Bos taurus]
Length = 341
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 38 GTQTAWDMLQEE---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
G TA +L++E E R++ C LD +L GG+ +TE+ G GKTQL +QL
Sbjct: 61 GVCTALHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGF---------------------------------Y 121
+ VQ+P GGLG A+Y+ F +
Sbjct: 121 CLAVQLPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIF 180
Query: 122 TEQSAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGF--VDLALRTRVLSGIAL 172
E +A ++ L + V E V ++V+IDS+A FR F LALR + L +
Sbjct: 181 IEHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDGAALALRAQRLLALGA 240
Query: 173 KLMNLAKKFSLALLEPNLATTA 194
+L L+ F +L N T A
Sbjct: 241 ELRRLSCAFRSPVLCVNQVTEA 262
>gi|209944582|gb|ACI96522.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|242082562|ref|XP_002441706.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
gi|241942399|gb|EES15544.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor]
Length = 344
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +++G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLNQGFMTGNDLLLK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|125578475|gb|EAZ19621.1| hypothetical protein OsJ_35197 [Oryza sativa Japonica Group]
Length = 348
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|209944612|gb|ACI96537.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHEXMRRLQRQHEL 211
>gi|21805940|gb|AAM76791.1| Dmc1 protein type A [Oryza sativa Japonica Group]
Length = 344
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|115487302|ref|NP_001066138.1| Os12g0143800 [Oryza sativa Japonica Group]
gi|14669854|dbj|BAB62026.1| RiLIM15A [Oryza sativa]
gi|18700483|dbj|BAB85213.1| DMC1 [Oryza sativa Japonica Group]
gi|113648645|dbj|BAF29157.1| Os12g0143800 [Oryza sativa Japonica Group]
gi|215766778|dbj|BAG99006.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 344
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|296215342|ref|XP_002754085.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Callithrix jacchus]
Length = 350
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K VK+VIIDS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGVKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|209946378|gb|ACI97420.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+A FR + D R R + +A + A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVAAIFRL-YNDYLERARHMRRLADAXXSYADKYNCAVVCVNQVATRD 260
>gi|302698277|ref|XP_003038817.1| RecA family ATPase [Schizophyllum commune H4-8]
gi|300112514|gb|EFJ03915.1| RecA family ATPase, partial [Schizophyllum commune H4-8]
Length = 348
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+Q++++ + I+T +D ILGGGI + ++E+ G GKTQL ++V Q+P + G
Sbjct: 101 IQDKRKRVNTISTGSKAVDGILGGGIMSQSISEVYGEFRTGKTQLAHTMSVVAQLPPDLG 160
Query: 106 GLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH------------ 138
G GK YI F ++ I Y F SEH
Sbjct: 161 GASGKVAYIDTEGTFRPDRIKSIAERFGVDGSMALENILYARAFNSEHQMELINECSSRF 220
Query: 139 ---KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD +++I+DSI FR G +L+ R + L+ + KL L++++++A+L N
Sbjct: 221 AEDKDFRLLIVDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSEEYNIAILLTN 277
>gi|77553662|gb|ABA96458.1| Meiotic recombination protein DMC1, putative, expressed [Oryza
sativa Japonica Group]
Length = 442
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALDKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYITN 273
>gi|585771|sp|P37384.1|DMC1_LILLO RecName: Full=Meiotic recombination protein DMC1 homolog
gi|431168|dbj|BAA04845.1| RAD51-like protein [Lilium longiflorum]
Length = 349
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D+L + ++S+ RITT LD +LGGGI ++TE G
Sbjct: 81 KVDKICEAAEKLVNVGYITGSDVLLK-RKSVIRITTGSQALDELLGGGIETLQITEAFGE 139
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQ+ L V+ Q+PV G GK YI F ++ SAV++
Sbjct: 140 FRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAVLDN 199
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 200 IIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 259
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 260 LSRLTKIAEEFNVAVYMTN 278
>gi|395849624|ref|XP_003797421.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Otolemur garnettii]
Length = 350
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLAR--ITTSCADL 63
L +S + K+ Y + + S + QTA+ + +A ++T+ L
Sbjct: 31 LCLSPLELVKMTGLSYCGVHELLRMVSRACAPQMQTAYRIKTRRSADVAPAFLSTTLPAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ + ++V +P GGL G +Y+ F E
Sbjct: 91 DEALCGGVACGSLTEITGPPGCGKTQFCMMMSVLATLPTNMGGLDGAVVYVDTESAFSAE 150
Query: 124 Q----------------------------------SAVINYLDKFVSE--HKDVKVVIID 147
+ V+ ++ E K VK+VIID
Sbjct: 151 RLVEIAESRFPSYFNAEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKGVKLVIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
S+A R F +L R R L+ A L LA++FS+ ++ N TT
Sbjct: 211 SVASVVRKEFDTQLQGNLKERNRFLAREASSLKYLAEEFSIPVILTNQITT 261
>gi|209944562|gb|ACI96512.1| spindle D [Drosophila simulans]
Length = 205
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 15 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 71
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----------QSAV---------- 127
Q+ +QL +NVQIP GGL G A++I F+ + Q A
Sbjct: 72 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAPRVPEFKAHKM 131
Query: 128 ---INY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 132 LQKIHYVRCPKLDQLMATVLSCHRHLVDHSDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 190
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 191 LHESMRRLQRQHELA 205
>gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM
9790]
gi|73913727|sp|Q6L126.1|RADA_PICTO RecName: Full=DNA repair and recombination protein RadA
gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM
9790]
Length = 323
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 56/209 (26%)
Query: 15 KLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQE 51
KL +GY + +I AS D++ +T ++L + +E
Sbjct: 26 KLRESGYDDIMTIAVASPKDLAEISGIAEGAAIKIINAARKYADVGNFETGEEILNKRKE 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ ++TT ++LDN+LGGG+ + +TE G G GKTQ+ QLAVN +PVE G
Sbjct: 86 -IKKLTTGSSNLDNLLGGGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDV 144
Query: 112 IYIGKCLGFYTE---QSAVINYLDK------------FVSEHK--------------DVK 142
+ I F E Q A LD + S H+ ++
Sbjct: 145 LIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADMAREYKIR 204
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLS 168
++I+DS+ HFR +V LA R ++L+
Sbjct: 205 LLIVDSLTSHFRSEYVGRGSLAERQQLLN 233
>gi|147903064|ref|NP_001079887.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Xenopus laevis]
gi|33417158|gb|AAH56103.1| MGC69118 protein [Xenopus laevis]
Length = 350
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+++ C LDN L GGI +TEI G GKTQ+G+QL ++VQ PVE+GGL A+YI
Sbjct: 81 KLSLGCKVLDNFLRGGIPLVGITEIAGESSAGKTQIGLQLCLSVQYPVEYGGLASGAVYI 140
Query: 115 GKCLGFYTEQSAVINYLDKFV-SEHK---DVKVVIIDSIAF 151
C TE + L + + S+HK DV +I +I F
Sbjct: 141 --C----TEDAFPSKRLQQLIKSQHKLRSDVPSDVIKNIRF 175
>gi|414882035|tpg|DAA59166.1| TPA: hypothetical protein ZEAMMB73_144544 [Zea mays]
Length = 342
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 35/199 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +++G T D+L + S+ RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLNQGFMTGNDLLLK---SVVRITTGSQALDELLGGGIETLCITEAFGE 132
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 133 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 192
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ K++I+DS+ FR F +LA R + L+ +
Sbjct: 193 IIYARAYTYEHQYNLLLGLAAKMAEEPFKLLIVDSVIALFRVDFSGRGELAERQQKLAQM 252
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 253 LSRLTKIAEEFNVAVYITN 271
>gi|297746183|emb|CBI16239.3| unnamed protein product [Vitis vinifera]
Length = 371
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G ++S + S +S TQTA ++++ + E +A + T LD LGGGI
Sbjct: 40 ELLDVGMARVTSAVAHISEIVSPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGKTQ ++L++ +P +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYI 142
>gi|209944570|gb|ACI96516.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
++Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKVHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|209944564|gb|ACI96513.1| spindle D [Drosophila simulans]
Length = 212
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----------QSAV---------- 127
Q+ +QL +NVQIP GGL G A++I F+ + Q A
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLEKQYAPRVPEFKAHKM 138
Query: 128 ---INY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|403264491|ref|XP_003924514.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 350
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VIIDS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|66810419|ref|XP_638929.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
gi|60467564|gb|EAL65585.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
Length = 564
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L++ Q S +++T C +D LGGGI +TEI G G GKTQL IQL++ VQ+P E G
Sbjct: 157 LEKLQISSIKLSTGCKIMDKCLGGGISPIGITEIAGESGSGKTQLCIQLSLQVQLPFEMG 216
Query: 106 GLGGKAIYIGKCLGFYTEQ 124
GL G +YI F T++
Sbjct: 217 GLNGACLYITTEPPFPTKR 235
>gi|403264489|ref|XP_003924513.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 350
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VIIDS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|90112019|gb|AAI14234.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Danio rerio]
Length = 342
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 14 GKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGC 73
GKL++ G+ + S C I R + + ITT + D +LGGG+
Sbjct: 80 GKLLTCGFQTASEYC------IKR-------------KQVFHITTGSLEFDKLLGGGVES 120
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------- 124
+TE G GKTQL L V Q+P EFG GGK I+I F E+
Sbjct: 121 MAITEAFGEFRTGKTQLSHTLCVTAQLPGEFGYTGGKVIFIDTENTFRPERLKDIADRFN 180
Query: 125 ---SAVIN---YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---D 159
AV++ Y + SEH+ K++IIDSI FR F +
Sbjct: 181 VDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGE 240
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LA R + L+ + +L +++++++A+ N T
Sbjct: 241 LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 273
>gi|209944558|gb|ACI96510.1| spindle D [Drosophila simulans]
Length = 212
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSATNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA---------------------- 126
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKM 138
Query: 127 --VINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LRKIHYVRCPKLDQLMATVLICHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|448462789|ref|ZP_21597848.1| DNA repair and recombination protein RadA [Halorubrum kocurii JCM
14978]
gi|445818010|gb|EMA67878.1| DNA repair and recombination protein RadA [Halorubrum kocurii JCM
14978]
Length = 343
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSAADIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E +E + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGAAVLERREEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+ E GGL G I++ F E +
Sbjct: 125 QLLPENGGLDGGCIFVDTEDTFRPERIDDMVRGLDDEILADEMERREIEGTPSDEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
+ +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LIEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEESEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELAERQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|209946364|gb|ACI97413.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 37/177 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R++ C+ LD GGG+ R +TE+ G G+GKTQL +QL++ VQ+P E GGLG Y
Sbjct: 86 SRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145
Query: 114 I---------------GKCLGFYTEQ--------------------SAVINYLDKFVSEH 138
I C + E + VIN + + + +H
Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+ ++IIDS+ FR + R R + +A L++ A K++ A++ N T +
Sbjct: 206 -GIGLIIIDSVXXIFRL-YXXYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|242011383|ref|XP_002426430.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510535|gb|EEB13692.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 317
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT 122
L N+L GG+ ++TE+ G PG GKTQ+ +Q V+V+IP E GG G+AI+I GF+
Sbjct: 86 LTNLLNGGLSIGQITELCGPPGSGKTQMCLQFCVDVRIPKELGGSEGEAIFISTDFGFHA 145
Query: 123 EQ-----SAVINYLDKFVS 136
E+ A +++ +K +S
Sbjct: 146 ERLRQISQAAVDHFNKMIS 164
>gi|146102147|ref|XP_001469294.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
gi|398023821|ref|XP_003865072.1| RAD51/dmc1 protein [Leishmania donovani]
gi|134073663|emb|CAM72400.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
gi|322503308|emb|CBZ38393.1| RAD51/dmc1 protein [Leishmania donovani]
Length = 287
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 48 EEQESLARITTSCADLDNILGGG-IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+++ ++ RI+T LD +LGGG I R +TE G GKTQ+G L V Q+P+E GG
Sbjct: 41 QQRSTILRISTGSVALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGG 100
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK------------ 139
GKA+Y+ F E+ I + LD + EH+
Sbjct: 101 GNGKAVYVDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMA 160
Query: 140 --DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + +LM +A++F++A+ N
Sbjct: 161 EDQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLMKIAEEFNIAVYITN 215
>gi|448536161|ref|ZP_21622406.1| DNA repair and recombination protein RadA [Halorubrum hochstenium
ATCC 700873]
gi|445702604|gb|ELZ54548.1| DNA repair and recombination protein RadA [Halorubrum hochstenium
ATCC 700873]
Length = 343
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KLI G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLIDNGFESYQSIAVASPGEMSNTADIGESSASDIINAAREAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E ++ + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGASVLERRQEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ---------------------------------S 125
Q+ E GGL G I++ F E+
Sbjct: 125 QLEPENGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPSDEEALEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM L ++ A+L N
Sbjct: 245 GELAERQQKLNKHLHDLMRLGDLYNTAILVTN 276
>gi|195503840|ref|XP_002098822.1| GE23723 [Drosophila yakuba]
gi|194184923|gb|EDW98534.1| GE23723 [Drosophila yakuba]
Length = 406
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 43/203 (21%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +I T LD GGGI + E+ G G GKT
Sbjct: 158 SVSHENLEIFYKSCWDI---SQSGTNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 214
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 215 QMCLQLCLNVQIPKAAGGLEGSALFIDTNQDFHPDRLKELALKLERQYAHKVPEFKAHKM 274
Query: 125 ---------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
A + + ++ H D+K+++IDS+AF R D A R +L
Sbjct: 275 LQKVYYVKCHKLHQLMATVLSCHRHLANHPDIKLIVIDSLAFTLR-MLEDGAQRYEMLLE 333
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ + L + LA + N+ T
Sbjct: 334 LHESMRRLQRHHELAWVFTNVLT 356
>gi|151941994|gb|EDN60350.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 460
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 KCLGFYTE--------------------------------QSAVIN-YLDKFVSEHK-DV 141
T+ Q +IN L + +K +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERYKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>gi|224107947|ref|XP_002314664.1| predicted protein [Populus trichocarpa]
gi|222863704|gb|EEF00835.1| predicted protein [Populus trichocarpa]
Length = 352
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 75 KVDKICEAAEKIVNYGYITGSDALLK-RKSVIRITTGSQALDELLGGGIETSAITEAFGE 133
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P + G GK YI F ++ AV++
Sbjct: 134 FRSGKTQLAHTLCVSTQLPTQMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 193
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 194 IIYARAYTYEHQYNLLLGLAAKMSEEPYRLLIVDSVIALFRVDFTGRGELAERQQKLAQM 253
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 254 LSRLIKIAEEFNVAVYMTN 272
>gi|209944604|gb|ACI96533.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|209944580|gb|ACI96521.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|209944600|gb|ACI96531.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|410076230|ref|XP_003955697.1| hypothetical protein KAFR_0B02650 [Kazachstania africana CBS 2517]
gi|372462280|emb|CCF56562.1| hypothetical protein KAFR_0B02650 [Kazachstania africana CBS 2517]
Length = 335
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 8 ISATQRG--KLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDN 65
+S T+R K+ + I A+S IS G +A Q+ A ++T LD+
Sbjct: 48 LSTTRRNLCKIKGLSEVKVEKIKEAASKIISVGFISATVQFDIRQKIFA-LSTGSKQLDS 106
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS 125
ILGGGI +TE+ G GKTQ+ L V Q+P E GG GK Y+ F E+
Sbjct: 107 ILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTAQLPKELGGGEGKVAYVDTEGTFRPERI 166
Query: 126 AVI---------------NYLDKFVSEHK--------------DVKVVIIDSIAFHFRHG 156
I Y SEH+ D +++IIDSI +FR
Sbjct: 167 KQIAERYDLDPEACLDNVTYARALNSEHQMELVEQLGGELSSGDYRLIIIDSIMANFRVD 226
Query: 157 FV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +L R + L+ KL LA++F++A+ N
Sbjct: 227 YCGRGELNERQQKLNQHLFKLNRLAEEFNVAIFMTN 262
>gi|348573117|ref|XP_003472338.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cavia
porcellus]
Length = 440
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 41/181 (22%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
A ++T+ + LD L GGI C +TEI G PG GKTQ + ++V +P GGL G +Y
Sbjct: 81 AFLSTTLSALDEALHGGIACGSLTEITGPPGCGKTQFCMMMSVLATLPPNMGGLEGAVVY 140
Query: 114 IGKCLGFYTEQ----------------------------------SAVINYLDKFVSE-- 137
I F E+ V+ ++ E
Sbjct: 141 IDTESAFSAERLIEIAESRFPRYFNTEEKLLLTSTKVYVYRELTCEKVLQRIESLEEEII 200
Query: 138 HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K VKVVIIDSIA R F ++ R + L+ A L LA++FS+ ++ N T
Sbjct: 201 SKRVKVVIIDSIASVVRKEFDTQLQGNMKERNKFLAKGASLLKYLAEEFSIPVILTNQIT 260
Query: 193 T 193
T
Sbjct: 261 T 261
>gi|349577075|dbj|GAA22244.1| K7_Rad57p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 460
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDEVLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>gi|337743291|gb|AEI73142.1| DMC1 [Kryptolebias marmoratus]
Length = 265
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 35/189 (18%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G QTA++ +++ ++ ITT + D +LGGGI +TE G GKTQL L V
Sbjct: 9 GFQTAFE-YSAKRKQVSHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 67
Query: 98 VQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD-- 140
Q+P E G LGGK I+I F + AV++ Y + SEH+
Sbjct: 68 AQLPGEDGYLGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMEL 127
Query: 141 --------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
K++IIDSI FR F +LA R + L+ + +L +++++++
Sbjct: 128 LDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNV 187
Query: 184 ALLEPNLAT 192
A+ N T
Sbjct: 188 AVFVTNQMT 196
>gi|255581709|ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
[Ricinus communis]
gi|223528715|gb|EEF30727.1| X-ray repair cross complementing protein 3, xrcc3, putative
[Ricinus communis]
Length = 301
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 53/188 (28%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ T C LD L GGI C +TEI G GKTQL +QL++ Q+P+ GGL ++Y+
Sbjct: 15 KCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQLPLSLGGLSASSLYL 74
Query: 115 G---------------------------------------KCLGFYTEQSAVINYLDKFV 135
C + +YL +
Sbjct: 75 HTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFVHSVRSADYLFDIM 134
Query: 136 SE----------HKDVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKF 181
+ H V++++IDS+A FR F DL R+ + I+ KL LA +F
Sbjct: 135 PKIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFFKISAKLRALAWRF 194
Query: 182 SLALLEPN 189
+LA++ N
Sbjct: 195 NLAVVVSN 202
>gi|225435171|ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Vitis vinifera]
Length = 439
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G ++S + S +S TQTA ++++ + E +A + T LD LGGGI
Sbjct: 40 ELLDVGMARVTSAVAHISEIVSPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGKTQ ++L++ +P +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIYI 142
>gi|238498922|ref|XP_002380696.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
NRRL3357]
gi|220693970|gb|EED50315.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
NRRL3357]
gi|391868075|gb|EIT77298.1| meiotic recombination protein [Aspergillus oryzae 3.042]
Length = 318
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 69 LSHQRKRVVRISTGSKQFDAILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 128
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 129 GADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEF 188
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 189 TGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 244
>gi|147777505|emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
Length = 2077
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ T C LD L GG+ C +TE+ G GKTQL +QL ++ Q+P GGL ++YI
Sbjct: 1794 KCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYI 1853
Query: 115 GKCLGFYTE------QSAVINYLDKFVSEHK----------------------------- 139
F + QS +Y SE+
Sbjct: 1854 HSEFPFPSRRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLR 1913
Query: 140 -----DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V++++IDSIA FR F DL R+ + I+ KL LA++F LA++ N
Sbjct: 1914 PPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTN 1972
>gi|448433653|ref|ZP_21585980.1| DNA repair and recombination protein RadA [Halorubrum
tebenquichense DSM 14210]
gi|445686245|gb|ELZ38581.1| DNA repair and recombination protein RadA [Halorubrum
tebenquichense DSM 14210]
Length = 343
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVDNGFESYQSIAVASPGEMSNTADIGESSASDIINAAREAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E ++ + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGASVLERRQEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ---------------------------------S 125
Q+ E GGL G I++ F E+
Sbjct: 125 QLEPENGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEILADEMERREIEGTPSDEEALEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
V +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM L ++ A+L N
Sbjct: 245 GELAERQQKLNKHLHDLMRLGDLYNTAILVTN 276
>gi|63852080|dbj|BAD98459.1| RecA homolog DMC1 [Anguilla japonica]
gi|90403222|dbj|BAE92010.1| Dmc1 [Anguilla japonica]
Length = 339
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A+ +S G TA++ E ++ + ITT + D ++GGGI +TE G
Sbjct: 68 KVDKIKEAAGKLLSNGFLTAFE-YSERRKQVFHITTGSLEFDKLIGGGIESMAITEAFGE 126
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P E G GGK I+I F +Q AV++
Sbjct: 127 FRTGKTQLSHTLCVTAQLPGEDGYTGGKVIFIDTENTFRPDRLKDIADRFSVDQEAVLDN 186
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 187 VLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLA 246
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 247 QMLSRLQKISEEYNVAVFVTNQMT 270
>gi|225446054|ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
Length = 300
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ T C LD L GG+ C +TE+ G GKTQL +QL ++ Q+P GGL ++YI
Sbjct: 17 KCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYI 76
Query: 115 GKCLGFYTE------QSAVINYLDKFVSEHK----------------------------- 139
F + QS +Y SE+
Sbjct: 77 HSEFPFPSRRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLR 136
Query: 140 -----DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V++++IDSIA FR F DL R+ + I+ KL LA++F LA++ N
Sbjct: 137 PPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTN 195
>gi|114653599|ref|XP_001138853.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 3 [Pan
troglodytes]
Length = 346
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|19924117|ref|NP_598194.1| DNA repair protein RAD51 homolog 2 isoform 2 [Homo sapiens]
gi|3005963|emb|CAA75680.1| R51H2 [Homo sapiens]
gi|73808274|gb|AAZ85144.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
Length = 350
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|46255039|ref|NP_598193.2| DNA repair protein RAD51 homolog 2 isoform 3 [Homo sapiens]
gi|38258892|sp|O15315.2|RA51B_HUMAN RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
AltName: Full=RAD51 homolog B; Short=Rad51B; AltName:
Full=RAD51-like protein 1
gi|20987416|gb|AAH30219.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
gi|61364588|gb|AAX42568.1| RAD51-like 1 [synthetic construct]
gi|123980046|gb|ABM81852.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
gi|123994811|gb|ABM85007.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
gi|261860168|dbj|BAI46606.1| RAD51-like 1 [synthetic construct]
Length = 384
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|209944590|gb|ACI96526.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ + WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSDENLRIFDNSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|114653601|ref|XP_001138758.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Pan
troglodytes]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|60810438|gb|AAX36146.1| RAD51-like 1 [synthetic construct]
Length = 385
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|395746014|ref|XP_003778373.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Pongo
abelii]
Length = 384
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TE+ G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEVTGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQSAVI---NYLDKFVSEH------------------------------ 138
+YI F E+ I + F +E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPSYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 139 ---KDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 VTT 261
>gi|332228953|ref|XP_003263651.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 3 [Nomascus
leucogenys]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|297695369|ref|XP_002824917.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 1 [Pongo
abelii]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TE+ G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEVTGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPSYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 VTT 261
>gi|365766519|gb|EHN08015.1| Rad57p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 447
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 87 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 146
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 147 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 206
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 207 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 266
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 267 ANSPV------AHRTYVTDYDYQLGWLV 288
>gi|332228951|ref|XP_003263650.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Nomascus
leucogenys]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|10835029|ref|NP_002868.1| DNA repair protein RAD51 homolog 2 isoform 1 [Homo sapiens]
gi|397507279|ref|XP_003824129.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Pan paniscus]
gi|2262209|gb|AAB63358.1| RecA-like protein [Homo sapiens]
gi|2801405|gb|AAC39723.1| DNA repair protein RAD51B [Homo sapiens]
gi|49168604|emb|CAG38797.1| RAD51L1 [Homo sapiens]
gi|60819388|gb|AAX36498.1| RAD51-like 1 [synthetic construct]
gi|61363118|gb|AAX42338.1| RAD51-like 1 [synthetic construct]
gi|119601363|gb|EAW80957.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119601364|gb|EAW80958.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|410221126|gb|JAA07782.1| RAD51-like 1 [Pan troglodytes]
gi|410247166|gb|JAA11550.1| RAD51-like 1 [Pan troglodytes]
gi|410296250|gb|JAA26725.1| RAD51-like 1 [Pan troglodytes]
gi|410335225|gb|JAA36559.1| RAD51-like 1 [Pan troglodytes]
Length = 350
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|317155982|ref|XP_001825494.2| meiotic recombination protein DMC1 [Aspergillus oryzae RIB40]
Length = 337
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 88 LSHQRKRVVRISTGSKQFDAILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 147
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 148 GADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEF 207
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 208 TGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 263
>gi|60830799|gb|AAX36945.1| RAD51-like 1 [synthetic construct]
Length = 351
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|358374534|dbj|GAA91125.1| meiotic recombination protein Dmc1 [Aspergillus kawachii IFO 4308]
Length = 337
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + RI+T D+ILGGG ++E+ G GKTQL ++V Q+P E GG
Sbjct: 90 HQRKRIVRISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELGGA 149
Query: 108 GGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------------- 139
GK YI F E+ A I Y SEH+
Sbjct: 150 DGKVAYIDTEGTFRPERIAQIAERFGVDPDAAQENIAYARALNSEHQLELLNTLSKEFAG 209
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 210 GEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNICVLMTN 263
>gi|332842559|ref|XP_003314455.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Pan troglodytes]
Length = 366
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|190405016|gb|EDV08283.1| DNA repair protein RAD57 [Saccharomyces cerevisiae RM11-1a]
gi|259145249|emb|CAY78513.1| Rad57p [Saccharomyces cerevisiae EC1118]
Length = 460
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>gi|6320207|ref|NP_010287.1| Rad57p [Saccharomyces cerevisiae S288c]
gi|131784|sp|P25301.1|RAD57_YEAST RecName: Full=DNA repair protein RAD57
gi|172345|gb|AAA34950.1| DNA repair protein [Saccharomyces cerevisiae]
gi|642809|emb|CAA88064.1| Rad57p [Saccharomyces cerevisiae]
gi|285811028|tpg|DAA11852.1| TPA: Rad57p [Saccharomyces cerevisiae S288c]
gi|392300119|gb|EIW11210.1| Rad57p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 460
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>gi|209944556|gb|ACI96509.1| spindle D [Drosophila simulans]
Length = 212
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSVTNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYELLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|28375587|emb|CAD66573.1| unnamed protein product [Homo sapiens]
Length = 394
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 89 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 148
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 149 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 208
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 209 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 268
Query: 191 ATT 193
TT
Sbjct: 269 ITT 271
>gi|389595323|ref|XP_003722884.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
gi|3132711|gb|AAC16335.1| Dmc1 homolog [Leishmania major]
gi|323364112|emb|CBZ13119.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
Length = 364
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 48 EEQESLARITTSCADLDNILGGG-IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+++ +L RI+T LD +LGGG I R +TE G GKTQ+G L V Q+P+E GG
Sbjct: 118 QQRSTLLRISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGG 177
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK------------ 139
GKA+Y+ F E+ I + LD + EH+
Sbjct: 178 GNGKAVYVDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMA 237
Query: 140 --DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + +L+ +A++F++A+ N
Sbjct: 238 EDQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITN 292
>gi|119601365|gb|EAW80959.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
Length = 420
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|254577177|ref|XP_002494575.1| ZYRO0A04708p [Zygosaccharomyces rouxii]
gi|238937464|emb|CAR25642.1| ZYRO0A04708p [Zygosaccharomyces rouxii]
Length = 463
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 39/190 (20%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
E E TT+ +D LGGGI +TE+ G GK+QL +QL ++VQ+P GG+
Sbjct: 80 EVEGPVPFTTTDVGIDEALGGGIYTHGITEVFGESSTGKSQLLMQLCLSVQLPTNMGGIK 139
Query: 109 GKAIYIGKCLGFYTEQ-SAVINYLDKFVSE----------------HKD----------- 140
GK +YI T++ +++I+ ++ V ++D
Sbjct: 140 GKCVYISTEGDLPTQRLASMISAREELVKHGVSQENVYTVTCCDLINQDHILNVQLPILL 199
Query: 141 ------VKVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+K++IIDSI+ H R F D + +A +L++LA K +LA++ N
Sbjct: 200 ENSRGAIKLIIIDSISHHMRVELPTRDFKDHQDNRFYVDQVAERLLDLANKHALAVVVAN 259
Query: 190 LATTANLAES 199
+ L ES
Sbjct: 260 QVSDRPLFES 269
>gi|209944554|gb|ACI96508.1| spindle D [Drosophila yakuba]
Length = 212
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLEIFYKSCWDI---SQSGTNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTNQDFHPDRLKELALKLERQYAHKVPEFKAHKM 138
Query: 125 ---------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
A + + ++ H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKVYYVKCHKLHQLMATVLSCHRHLANHPDIKLIVIDSLAFTLR-MLEDGAQRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L + LA
Sbjct: 198 LHESMRRLQRHHELA 212
>gi|366997935|ref|XP_003683704.1| hypothetical protein TPHA_0A01870 [Tetrapisispora phaffii CBS 4417]
gi|357521999|emb|CCE61270.1| hypothetical protein TPHA_0A01870 [Tetrapisispora phaffii CBS 4417]
Length = 332
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LDNILGGGI +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 94 LSTGSKQLDNILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPRELGGAEGKVAYID 153
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ + K++++
Sbjct: 154 TEGTFRPERIKQIAEKYGLDPESCLDNVSYARALNSEHQMELVEKLGEELSTGEYKLIVV 213
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ KL LA++F+ A+ N
Sbjct: 214 DSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNCAVFMTN 259
>gi|332228955|ref|XP_003263652.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 4 [Nomascus
leucogenys]
Length = 401
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>gi|307191609|gb|EFN75106.1| DNA-repair protein XRCC3 [Harpegnathos saltator]
Length = 244
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 32/163 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI- 114
+TT C+ LD IL GI CR +T+ G G GKTQL +QL + VQ+P GGL AIYI
Sbjct: 11 LTTGCSKLDTILKDGISCRGITQFYGAAGTGKTQLALQLCLTVQLPTTAGGLQAGAIYIC 70
Query: 115 ------GKCLGFYTEQSAV---------INYLD--------KFVSEHK--------DVKV 143
K L E S + + ++D ++ HK + +
Sbjct: 71 TEALFPSKRLQQLIENSEIAKIHSVNGDVIFVDHASTMDELEYCLHHKVPALMNAHKIGL 130
Query: 144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
+IIDSIA +R + R + L I +L L K L ++
Sbjct: 131 LIIDSIAAPYRVEDWEDPSRGKSLRKIGRQLHELCKNGDLCVI 173
>gi|28193230|emb|CAD62357.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 88 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 147
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 148 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 207
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 208 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 267
Query: 191 ATT 193
TT
Sbjct: 268 ITT 270
>gi|66472867|ref|NP_001018618.1| meiotic recombination protein DMC1/LIM15 homolog [Danio rerio]
gi|63852092|dbj|BAD98462.1| RecA homolog Dmc1 [Danio rerio]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 14 GKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGC 73
GKL++ G+ + S C I R + + ITT + D +LGGG+
Sbjct: 80 GKLLTCGFQTASEYC------IKR-------------KQVFHITTGSLEFDKLLGGGVES 120
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------- 124
+TE G GKTQL L V Q+P E+G GGK I+I F E+
Sbjct: 121 MAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFIDTENTFRPERLKDIADRFN 180
Query: 125 ---SAVIN---YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---D 159
AV++ Y + SEH+ K++IIDSI FR F +
Sbjct: 181 VDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGE 240
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LA R + L+ + +L +++++++A+ N T
Sbjct: 241 LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 273
>gi|190338308|gb|AAI63218.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Danio rerio]
Length = 342
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 14 GKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGC 73
GKL++ G+ + S C I R + + ITT + D +LGGG+
Sbjct: 80 GKLLTCGFQTASEYC------IKR-------------KQVFHITTGSLEFDKLLGGGVES 120
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------- 124
+TE G GKTQL L V Q+P E+G GGK I+I F E+
Sbjct: 121 MAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFIDTENTFRPERLKDIADRFN 180
Query: 125 ---SAVIN---YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---D 159
AV++ Y + SEH+ K++IIDSI FR F +
Sbjct: 181 VDHDAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGE 240
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
LA R + L+ + +L +++++++A+ N T
Sbjct: 241 LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 273
>gi|326920616|ref|XP_003206565.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Meleagris
gallopavo]
Length = 496
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 40 QTAWDMLQEE--QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA++M S A + TS LD +L GGI C +TE+ PG GKTQ I ++V
Sbjct: 65 QTAYEMKMRRSVDPSAAFLPTSLHSLDKVLHGGIPCGSLTELTSPPGCGKTQFCITMSVL 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+PV GGL G IYI F E+
Sbjct: 125 ATLPVSMGGLDGAVIYIDTESAFSAER 151
>gi|241612908|ref|XP_002407309.1| RAD51C protein, putative [Ixodes scapularis]
gi|215502773|gb|EEC12267.1| RAD51C protein, putative [Ixodes scapularis]
Length = 315
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 53/195 (27%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA ++LQ + +L I T +D L GGI R++TE+ G PG GKTQ +Q+A +
Sbjct: 57 KTASELLQHSR-TLEPIPTWIPSIDAALDGGIARRKITEVTGFPGSGKTQFCLQVAASNH 115
Query: 100 IPVEFGGLGGKAIYIGKCLGFYT----EQ------------------SAVINYLDKFVS- 136
G +YI C G +T EQ A N+ + S
Sbjct: 116 F------TGNSTVYI-DCKGGFTRTRFEQILDGIASKQRSRRREAGVCATPNFCFRPCSS 168
Query: 137 ----------------------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKL 174
+ + +VI+D FH RHG DL LR +++ + KL
Sbjct: 169 WEELSALLSFLLLLPQQSLAANDDHPITLVIVDGFDFHLRHGVDDLPLRRKIVGCMTRKL 228
Query: 175 MNLAKKFSLALLEPN 189
+++A K +A+L N
Sbjct: 229 VDVATKLDVAVLLTN 243
>gi|449432658|ref|XP_004134116.1| PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis
sativus]
gi|449504138|ref|XP_004162263.1| PREDICTED: meiotic recombination protein DMC1 homolog [Cucumis
sativus]
Length = 345
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 KVDKICEAAEKLVNFGYITGSDALLK-RKSVVRITTGSQALDELLGGGIETLAITEAFGE 135
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 136 FRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 195
Query: 130 --YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ K++I+DSI FR F +LA R + L+ +
Sbjct: 196 IIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQM 255
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 256 LSRLTKIAEEFNVAVYMTN 274
>gi|2262211|gb|AAB63359.1| RecA-like protein [Mus musculus]
Length = 350
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
SIA R F ++ R + L A L LA +FS+ ++ N TT
Sbjct: 211 SIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITT 261
>gi|24650551|ref|NP_733200.1| spindle D [Drosophila melanogaster]
gi|17945461|gb|AAL48784.1| RE19845p [Drosophila melanogaster]
gi|23180023|gb|AAN14399.1| spindle D [Drosophila melanogaster]
gi|30060286|gb|AAP13056.1| spindle D [Drosophila melanogaster]
gi|220948130|gb|ACL86608.1| spn-D-PA [synthetic construct]
gi|220957374|gb|ACL91230.1| spn-D-PA [synthetic construct]
Length = 270
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 43/203 (21%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S + ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENFRIFDKSCWDI---SQSASNKILTGKKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ + L ++ L + N+ T
Sbjct: 198 LHESMRRLQRQHELTWVFTNVLT 220
>gi|31982072|ref|NP_033040.2| DNA repair protein RAD51 homolog 2 isoform 1 [Mus musculus]
gi|38258893|sp|O35719.2|RA51B_MOUSE RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
AltName: Full=RAD51 homolog B; AltName: Full=RAD51-like
protein 1
gi|26328691|dbj|BAC28084.1| unnamed protein product [Mus musculus]
gi|148670701|gb|EDL02648.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 350
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
SIA R F ++ R + L A L LA +FS+ ++ N TT
Sbjct: 211 SIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITT 261
>gi|7509776|pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
Length = 391
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 94/228 (41%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE-----------------EQESL 53
KL AGY + S+ + ++ Q A +++E ++ L
Sbjct: 90 KLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 149
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG GK +Y
Sbjct: 150 VQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMY 209
Query: 114 IGKCLGFYTEQSAVI---------NYLDK------FVSEH--------------KDVKVV 144
I F E+ I + L+ + SEH VV
Sbjct: 210 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVV 269
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
I+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 270 IVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 317
>gi|67904210|ref|XP_682361.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
gi|40742735|gb|EAA61925.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4]
gi|259485496|tpe|CBF82567.1| TPA: meiotic recombination protein (Dmc1), putative
(AFU_orthologue; AFUA_7G02200) [Aspergillus nidulans
FGSC A4]
Length = 658
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D+ILGGG ++E+ G GKTQL ++V Q+P + G
Sbjct: 88 LSHQRKRVVRISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKDMG 147
Query: 106 GLGGKAIYIGKCLGFYTEQ---------------SAVINYLDKFVSEHK----------- 139
G GK YI F E+ I Y SEH+
Sbjct: 148 GAEGKVAYIDTEGTFRPERIGQIAERFGVDPDSAKENIAYARALNSEHQLELLNTLSKEF 207
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR F +LA R + L+ +KL ++A++F++ +L N
Sbjct: 208 VGGEYRLLIIDSIMNCFRVDFCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 263
>gi|47213355|emb|CAF92978.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
ES R++ CA LD +L GG+ +TE+ G GKTQL +QL + VQ P ++GGL
Sbjct: 72 ESGLRLSVGCAVLDELLRGGLPAGGITELSGQSSAGKTQLALQLCLCVQYPTQYGGLDSG 131
Query: 111 AIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFHFR 154
A+YI TE I L + +S+ DV +I ++ F R
Sbjct: 132 AVYIC------TENCFPIRRLQQLISDQHALRPDVPPSLISTLKFSDR 173
>gi|355758569|gb|EHH61497.1| hypothetical protein EGM_21060, partial [Macaca fascicularis]
Length = 253
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 43/223 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQE--SLARITTSCADL 63
L +S + K+ Y + + S + QTA+++ + S A ++T+ + L
Sbjct: 31 LCLSPLELMKMTGLSYRGVHELLCMVSRACAPKMQTAYEIKAQRSADFSPAFLSTTLSAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I +++ +P GGL G +YI F E
Sbjct: 91 DEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTHMGGLEGAVVYIDTESAFSAE 150
Query: 124 Q----------------------------------SAVINYLDKFVSE--HKDVKVVIID 147
+ V+ ++ E K +++VIID
Sbjct: 151 RLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIRLVIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLAL 185
S+A R F +L R + L+ A L LA++FS+ +
Sbjct: 211 SVASVVRKEFDTQLQGNLKERNKFLAREACSLKYLAEEFSIPV 253
>gi|121709155|ref|XP_001272325.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
gi|119400474|gb|EAW10899.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
Length = 337
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 88 LSHQRKRVVKISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 147
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 148 GADGKVAYIDTEGTFRPERIAQIAERFGVDSDSAQENIAYARALNSEHQLELLNTLSREF 207
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 208 AGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNICVLMTN 263
>gi|313217208|emb|CBY38360.1| unnamed protein product [Oikopleura dioica]
Length = 338
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G +TA D + E + RITT + D +L GGI +TE+ G GK+QL + L
Sbjct: 82 VPMGFRTATDYHKARSE-MVRITTGSKEFDRMLAGGIETGSITELFGEFRTGKSQLCMTL 140
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK 139
AV Q+PV+ GG GKA+YI F E+ I + LD F ++H+
Sbjct: 141 AVTAQLPVDLGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQ 200
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DSI +R + +LA R L L+ LA F
Sbjct: 201 MTMLHTCAAMMTESRYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFG 260
Query: 183 LALLEPNLATTANL 196
+A++ N TAN+
Sbjct: 261 VAIVITN-QVTANV 273
>gi|71997301|ref|NP_001023466.1| Protein RAD-51, isoform b [Caenorhabditis elegans]
gi|2913897|dbj|BAA24982.1| RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
gi|3786402|gb|AAD10194.1| RAD51 short isoform [Caenorhabditis elegans]
gi|35210311|emb|CAE47473.1| Protein RAD-51, isoform b [Caenorhabditis elegans]
Length = 357
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 94/228 (41%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE-----------------EQESL 53
KL AGY + S+ + ++ Q A +++E ++ L
Sbjct: 56 KLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 115
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG GK +Y
Sbjct: 116 VQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMY 175
Query: 114 IGKCLGFYTEQSAVI---------NYLDK------FVSEH--------------KDVKVV 144
I F E+ I + L+ + SEH VV
Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVV 235
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
I+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 236 IVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 283
>gi|403216757|emb|CCK71253.1| hypothetical protein KNAG_0G01960 [Kazachstania naganishii CBS
8797]
Length = 329
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 53/241 (21%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDIS--RG-TQTAWDMLQEEQESLARI-- 56
E+ I+A+ KL S+G +++++ S + ++ RG ++ + ++E + R+
Sbjct: 16 ELQNYGINASDLSKLKSSGIFTVNTVLSTTRRNLCKVRGLSEVKVEKIKEAAAKIVRVGF 75
Query: 57 ----------------TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+T +LD ILGGGI +TE+ G GKTQ+ L V Q+
Sbjct: 76 VPATLQLELRQRVIALSTGAKNLDAILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTAQL 135
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------ 139
P E GG GK YI F E+ I Y SEH+
Sbjct: 136 PREMGGGEGKVAYIDTEGTFRPERIRQIAERYELDPDTCLENITYARALNSEHQMELVEQ 195
Query: 140 --------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188
D +++I+DSI +FR + +L R + L+ KL LA++F++A+
Sbjct: 196 LGGELSSGDYRLIIVDSIMANFRVDYCGRGELNERQQRLNQHLFKLNRLAEEFNVAVFMA 255
Query: 189 N 189
N
Sbjct: 256 N 256
>gi|448441652|ref|ZP_21589259.1| DNA repair and recombination protein RadA [Halorubrum saccharovorum
DSM 1137]
gi|445688688|gb|ELZ40939.1| DNA repair and recombination protein RadA [Halorubrum saccharovorum
DSM 1137]
Length = 343
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ G+ S SI AS ++S G +A D++
Sbjct: 5 ELEDLPGVGPATADKLVENGFESYQSIAVASPGEMSNTADIGESSAADIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
E ++ + +++ ++D++LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGATVLERRQEIGKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE---------------------------------QS 125
Q+ E GGL G I++ F E +
Sbjct: 125 QLLPENGGLDGGCIFVDTEDTFRPERIDDMVRGLDDEILADEMERREIEGTPDDEEAMEE 184
Query: 126 AVINYLDK------FVSEHK-------------------DVKVVIIDSIAFHFRHGFV-- 158
+ +LD+ F S H+ +++V +DS+ HFR +V
Sbjct: 185 LIEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEEGEWPIRIVCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ A+L N
Sbjct: 245 GELAERQQKLNKHLHDLMRIGDLFNTAILVTN 276
>gi|386001150|ref|YP_005919449.1| DNA repair and recombination protein RadA [Methanosaeta
harundinacea 6Ac]
gi|357209206|gb|AET63826.1| DNA repair and recombination protein RadA [Methanosaeta
harundinacea 6Ac]
Length = 326
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 67/231 (29%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ S+ ++ AS + ++ G TA DM+ E ++
Sbjct: 19 KLREAGFASVEALAVASPAQLAACADVGESTAAKIIASARAAADIGGFETGDMVMERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT D ++GGG + + E+ G G GKTQ+ Q+AVNVQ+P E GGL G I
Sbjct: 79 VGKVTTGSETFDALMGGGFETQAIVEVYGEFGSGKTQVAHQVAVNVQLPAEEGGLNGSVI 138
Query: 113 YIGKCLGFYTEQSA------------------------------------------VINY 130
I F E+ A ++
Sbjct: 139 IIDTENTFRPERIAQMVEGLPPSGEPEKPREPEEFLRNIHVARAYNSNHQILLAESALDL 198
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
+K K +++I+DS+ HFR +V LA R + L+ LM A
Sbjct: 199 AEKMKKSGKPARLLIVDSLTAHFRAEYVGRGTLADRQQKLNKHLHTLMRFA 249
>gi|71997295|ref|NP_001023465.1| Protein RAD-51, isoform a [Caenorhabditis elegans]
gi|15718273|emb|CAB61038.2| Protein RAD-51, isoform a [Caenorhabditis elegans]
Length = 395
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 32/173 (18%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 149 KRSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGE 208
Query: 109 GKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH--------------K 139
GK +YI F E+ I + L+ + SEH
Sbjct: 209 GKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSES 268
Query: 140 DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 269 RYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 321
>gi|396482153|ref|XP_003841408.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
maculans JN3]
gi|312217982|emb|CBX97929.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
maculans JN3]
Length = 339
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 57/238 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR------------------------GTQTAW 43
I A KL + GY +++S+ SA+ ++ + G QTA
Sbjct: 29 IGAVDIAKLKANGYYTIASVHSATRRNLLKIKGFSEIKVDKVKDALGKCLPSGGGFQTAQ 88
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
++ Q + + RI+T LD +LGGG ++E+ G GKTQL ++V Q+P +
Sbjct: 89 ELGQHRKRVI-RISTGSKALDAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVIAQLPKD 147
Query: 104 FGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK--------- 139
GG GK YI F E+ A I Y SEH+
Sbjct: 148 MGGADGKVAYIDTEGTFRPERIAQIAERFGVDPDAAQDNITYARAVNSEHQMELLNKVAE 207
Query: 140 -----DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +L R + L+ KL ++A++F++A+L N
Sbjct: 208 FFVGNEYRLLIIDSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTN 265
>gi|326483933|gb|EGE07943.1| Rad51 family protein [Trichophyton equinum CBS 127.97]
Length = 356
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D ILGGG ++E+ G GK
Sbjct: 94 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDTILGGGFQSMSISEVYGEFRCGK 148
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLD 132
TQL ++V Q+P + GG GKA YI F E+ A I+Y
Sbjct: 149 TQLSHTMSVIAQLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYAR 208
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 209 ALNSEHQLELLNTLAKEFASGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 268
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 269 HMAEEFNVCVLMTN 282
>gi|326476592|gb|EGE00602.1| meiotic recombination protein dmc1 [Trichophyton tonsurans CBS
112818]
Length = 337
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D ILGGG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDTILGGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLD 132
TQL ++V Q+P + GG GKA YI F E+ A I+Y
Sbjct: 130 TQLSHTMSVIAQLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGIDPDSALENISYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLAKEFASGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|453232188|ref|NP_001263771.1| Protein RAD-51, isoform c [Caenorhabditis elegans]
gi|442535369|emb|CCQ25700.1| Protein RAD-51, isoform c [Caenorhabditis elegans]
Length = 362
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 94/228 (41%), Gaps = 53/228 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE-----------------EQESL 53
KL AGY + S+ + ++ Q A +++E ++ L
Sbjct: 61 KLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQL 120
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG GK +Y
Sbjct: 121 VQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMY 180
Query: 114 IGKCLGFYTEQSAVI---------NYLDK------FVSEH--------------KDVKVV 144
I F E+ I + L+ + SEH VV
Sbjct: 181 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVV 240
Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
I+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 241 IVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 288
>gi|167382024|ref|XP_001735947.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901853|gb|EDR27840.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 264
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ I T +D L GGI E+T+I G PGIGK+QL +Q+A NVQ+P E GGL + I
Sbjct: 18 IRNIPTFNQQIDQFLNGGIPLGEITQIVGFPGIGKSQLCMQIACNVQLPEEIGGLNSECI 77
Query: 113 Y--------------IGKCL-GFYTEQSAVINYLDKFVSEHK------------------ 139
Y + +C+ Y E + + K + ++
Sbjct: 78 YYDSYSQFCSFRVQKMAECICASYPEYKLNVKEILKKIHVYQPHDIISLCSSLLSINNKL 137
Query: 140 -DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
+K++IIDSI ++ + +R L I + + KF L+++ N TT +
Sbjct: 138 NKIKLIIIDSIPTFYKKTICNDTIRLAALHRIIQIVSIYSNKFYLSVVIVNHLTTKKI 195
>gi|6321027|ref|NP_011106.1| Dmc1p [Saccharomyces cerevisiae S288c]
gi|118683|sp|P25453.1|DMC1_YEAST RecName: Full=Meiotic recombination protein DMC1
gi|171401|gb|AAA34571.1| Dmc1, partial [Saccharomyces cerevisiae]
gi|287608|dbj|BAA01637.1| hypothetical protein [Saccharomyces cerevisiae]
gi|603420|gb|AAB64706.1| Dmc1p: DNA repair protein [Saccharomyces cerevisiae]
gi|151944897|gb|EDN63156.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190405735|gb|EDV09002.1| meiotic recombination protein DMC1 [Saccharomyces cerevisiae
RM11-1a]
gi|259146109|emb|CAY79369.1| Dmc1p [Saccharomyces cerevisiae EC1118]
gi|285811814|tpg|DAA07842.1| TPA: Dmc1p [Saccharomyces cerevisiae S288c]
gi|349577841|dbj|GAA23009.1| K7_Dmc1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299885|gb|EIW10977.1| Dmc1p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|446776|prf||1912300A ISC2 gene
Length = 334
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LD+ILGGGI +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 96 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYID 155
Query: 116 KCLGFYTEQS---------------AVINYLDKFVSEHK--------------DVKVVII 146
F E+ A ++Y SEH+ D +++++
Sbjct: 156 TEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVV 215
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L+ R + L+ KL LA++F++A+ N
Sbjct: 216 DSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTN 261
>gi|341903203|gb|EGT59138.1| hypothetical protein CAEBREN_12768 [Caenorhabditis brenneri]
Length = 357
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE--------------- 48
IS+ KL AGY + S+ + ++ Q A +++E
Sbjct: 49 ISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKYVQMGFTTGAEV 108
Query: 49 --EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 109 HVKRSQLVQIRTGSAALDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGG 168
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH------------- 138
GK +YI F E+ I + L+ + SEH
Sbjct: 169 GEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMS 228
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 229 ESRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 283
>gi|318056252|ref|NP_001187675.1| DNA repair protein XRCC3 [Ictalurus punctatus]
gi|308323669|gb|ADO28970.1| DNA repair protein XRCC3 [Ictalurus punctatus]
Length = 349
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA +++ E SL R++ +C LD +L GG+ +TE+ G GKTQ G+QL+++
Sbjct: 64 TALQLIRGEFPSLEPGHRLSFACPVLDGLLHGGLPLHGITELAGESAAGKTQFGLQLSLS 123
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAF 151
VQ E GGLG A+YI C TE I L + +++ DV +I SI F
Sbjct: 124 VQYSREHGGLGAGAVYI--C----TEDPFPIKRLRQLITQQSRLRPDVPPALIRSIRF 175
>gi|327296680|ref|XP_003233034.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
gi|326464340|gb|EGD89793.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892]
Length = 337
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D ILGGG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDTILGGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLD 132
TQL ++V Q+P + GG GKA YI F E+ A I+Y
Sbjct: 130 TQLSHTMSVIAQLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLAKEFASGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|341903964|gb|EGT59899.1| CBN-RAD-51 protein [Caenorhabditis brenneri]
Length = 357
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE--------------- 48
IS+ KL AGY + S+ + ++ Q A +++E
Sbjct: 49 ISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKYVQMGFTTGAEV 108
Query: 49 --EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 109 HVKRSQLVQIRTGSAALDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGG 168
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH------------- 138
GK +YI F E+ I + L+ + SEH
Sbjct: 169 GEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMS 228
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 229 ESRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 283
>gi|315043933|ref|XP_003171342.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
gi|311343685|gb|EFR02888.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
Length = 337
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D+ILGGG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDSILGGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GKA YI F E+ SA+ N Y
Sbjct: 130 TQLSHTMSVIAQLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLAKEFASGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|119489209|ref|XP_001262856.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
gi|119411014|gb|EAW20959.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181]
Length = 357
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 115 LSHQRKRVVKISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 174
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 175 GADGKVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSEHQLELLNTLSREF 234
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ ++L ++A++F++ +L N
Sbjct: 235 AGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMRLAHMAEEFNVCVLMTN 290
>gi|61806653|ref|NP_001013559.1| DNA repair protein XRCC3 [Danio rerio]
gi|60552509|gb|AAH90820.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Danio rerio]
gi|182888930|gb|AAI64394.1| Xrcc3 protein [Danio rerio]
Length = 352
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 1 MEVSKLPISATQRGKLISAGY------TSLSSICSASSSDISRGTQ------------TA 42
+E++ I+A ++G SA L + S +D+ R Q TA
Sbjct: 6 LELNPRIIAAVKKGNFRSAKEVLCVSGPDLQRLTRLSKADVQRLHQAVAASVRKSKPVTA 65
Query: 43 WDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++Q E L R++ +C LD ++ GG+ R +TE+ G GKTQ +QL ++VQ
Sbjct: 66 LQLIQGECPVLEPGHRLSFACPVLDGLMRGGLPLRGITELAGESAAGKTQFCLQLCLSVQ 125
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAF 151
P E GGL A+YI TE S I L + +++ D+ +I S+ F
Sbjct: 126 YPQEHGGLNSGAVYI------CTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRF 175
>gi|209944574|gb|ACI96518.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|256268991|gb|EEU04334.1| Rad57p [Saccharomyces cerevisiae JAY291]
Length = 460
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKLL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>gi|313214368|emb|CBY42765.1| unnamed protein product [Oikopleura dioica]
gi|313239465|emb|CBY14399.1| unnamed protein product [Oikopleura dioica]
Length = 340
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G +TA D + E + RITT + D +L GGI +TE+ G GK+QL + L
Sbjct: 82 VPMGFRTATDYHKARSE-MIRITTGSKEFDRMLAGGIETGSITELFGEFRTGKSQLCMTL 140
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK 139
AV Q+PV+ GG GKA+YI F E+ I + LD F ++H+
Sbjct: 141 AVTAQLPVDLGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQ 200
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DSI +R + +LA R L L+ LA F
Sbjct: 201 MTMLHTCAAMMTESRYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFG 260
Query: 183 LALLEPNLATTANL 196
+A++ N TAN+
Sbjct: 261 VAIVITN-QVTANV 273
>gi|47933423|gb|AAT39336.1| DNA repair protein RAD51 [Oikopleura dioica]
gi|313216997|emb|CBY38192.1| unnamed protein product [Oikopleura dioica]
gi|313229155|emb|CBY23740.1| unnamed protein product [Oikopleura dioica]
Length = 340
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G +TA D + E + RITT + D +L GG+ +TE+ G GK+QL + L
Sbjct: 82 VPMGFRTATDYHKARSE-MVRITTGSKEFDRMLAGGVETGSITELFGEFRTGKSQLCMTL 140
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK 139
AV Q+PV+ GG GKA+YI F E+ I + LD F ++H+
Sbjct: 141 AVTAQLPVDLGGGEGKALYIDTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQ 200
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DSI +R + +LA R L L+ LA F
Sbjct: 201 MTMLHTCAAMMTESRYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFG 260
Query: 183 LALLEPNLATTANL 196
+A++ N TAN+
Sbjct: 261 VAIVITN-QVTANV 273
>gi|308493054|ref|XP_003108717.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
gi|308248457|gb|EFO92409.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
Length = 390
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE--------------- 48
IS+ KL AGY + S+ + ++ Q A +++E
Sbjct: 64 ISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKYVQMGFTTGAEV 123
Query: 49 --EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 124 HVKRSQLVQIRTGSAALDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGG 183
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH------------- 138
GK +YI F E+ I + L+ + SEH
Sbjct: 184 GEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMS 243
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 244 ESRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 298
>gi|268552839|ref|XP_002634402.1| C. briggsae CBR-RAD-51 protein [Caenorhabditis briggsae]
Length = 361
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE--------------- 48
IS+ KL AGY + S+ + ++ Q A +++E
Sbjct: 53 ISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKYVQMGFTTGAEV 112
Query: 49 --EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 113 HVKRSQLVQIRTGSAALDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGG 172
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH------------- 138
GK +YI F E+ I + L+ + SEH
Sbjct: 173 GEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMS 232
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 233 ESRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 287
>gi|308453438|ref|XP_003089441.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
gi|308240341|gb|EFO84293.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
Length = 390
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE--------------- 48
IS+ KL AGY + S+ + ++ Q A +++E
Sbjct: 64 ISSGDISKLKEAGYYTYESLAFTTRRELRNVKGISDQKAEKIMKEAMKYVQMGFTTGAEV 123
Query: 49 --EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
++ L +I T A LD +LGGGI +TE+ G GKTQL LAV Q+P++ GG
Sbjct: 124 HVKRSQLVQIRTGSAALDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGG 183
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEH------------- 138
GK +YI F E+ I + L+ + SEH
Sbjct: 184 GEGKCMYIDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMALIIRAGAMMS 243
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VVI+D HFR+ + DLA R LS L LA ++ +A++ N
Sbjct: 244 ESRYAVVIVDCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITN 298
>gi|209944610|gb|ACI96536.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum
DSM 1728]
gi|13878691|sp|Q9HJ68.1|RADA_THEAC RecName: Full=DNA repair and recombination protein RadA
gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum]
Length = 323
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 56/209 (26%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------------------QTAWDMLQEEQE 51
KL GY + +I AS D+S T +T ++L E ++
Sbjct: 27 KLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKIIAAARKFADIGNFETGEEIL-ERRK 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S+ ++TT +LD++LGGG+ + +TE G G GKTQ+ QLAVN +P E GG
Sbjct: 86 SIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDV 145
Query: 112 IYIGKCLGFYTEQS---------------AVINYLDKFVSEHK--------------DVK 142
+ I F E+ I+ + S H+ ++K
Sbjct: 146 MMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIK 205
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLS 168
++I+DS+ HFR +V LA R ++L+
Sbjct: 206 LLIVDSLTAHFRSEYVGRGSLAERQQLLN 234
>gi|410895827|ref|XP_003961401.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Takifugu rubripes]
Length = 342
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 35/203 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+ ++ G QTA++ +++ + ITT D D +LGGGI +TE G
Sbjct: 72 VEKIKEAAGKLLNVGFQTAFE-YSAKRKHVFHITTGSQDFDKLLGGGIESMAITEAFGEF 130
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P + G GGK I+I F +Q AV++
Sbjct: 131 RTGKTQLSHTLCVTSQLPGDDGYSGGKVIFIDTENTFRPDRLRDIADKFNVDQDAVLDNV 190
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K+++IDSI FR F +LA R + L+
Sbjct: 191 LYARAYTSEHQMELLDFVAAKFHEEGGVFKLLVIDSIMALFRVDFSGRGELAERQQKLAQ 250
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 MLSRLQKISEEYNVAVFITNQMT 273
>gi|291406479|ref|XP_002719601.1| PREDICTED: RAD51-like 1 [Oryctolagus cuniculus]
Length = 344
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 43/197 (21%)
Query: 40 QTAWDMLQEEQESL--ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
+TA+ M + +L A + TS LD L GG+ C +TEI G PG GKTQ I +++
Sbjct: 65 KTAYAMKTQRCAALSPAFLPTSLPALDEALRGGVACGSLTEITGPPGCGKTQFCIMMSIL 124
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEH---------------- 138
+P + GGL G +YI F E+ I + F +E
Sbjct: 125 ATLPTDMGGLEGAVVYIDTESAFSAERLIEIAESRFPRYFNTEEKLLLTSSKVHLYRELS 184
Query: 139 -----------------KDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMN 176
K VK+VIIDS+A R F ++ R + L+ A L
Sbjct: 185 CDEVMQRIESLEEDIISKGVKLVIIDSVASVVRKEFDTQLQGNMKERNKFLAREASLLKY 244
Query: 177 LAKKFSLALLEPNLATT 193
+A++FS+ ++ N TT
Sbjct: 245 VAEEFSIPVILTNQITT 261
>gi|320166664|gb|EFW43563.1| HsLim15 [Capsaspora owczarzaki ATCC 30864]
Length = 345
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 55/246 (22%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSS---DISRGTQTAWDMLQE---------- 48
E+ K I+A KL +AG ++ + A+ +I ++ D ++E
Sbjct: 31 ELQKHGINAADIAKLKTAGICTIKGVQMATKKTLCNIKGISEAKMDKMKEAVAKMGDAGF 90
Query: 49 --------EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++ + RI+T A+L +LGGGI +TEI G GKTQ+ L V Q+
Sbjct: 91 MTAMEYSVKRQMVFRISTGSAELSKLLGGGIESMAITEIFGEFRTGKTQICHTLCVTTQL 150
Query: 101 PVEFGGLGGKAIYIG-------KCLG-----FYTEQSAVI------------NYLD---- 132
PVE GG GK +I LG F +++AV+ + +D
Sbjct: 151 PVEVGGACGKVAFIDTEGTFRPDRLGPIADRFGLDRNAVLENVMFARAYNSEHQMDLINQ 210
Query: 133 ---KFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
KF E +++I+DS+ FR F +LA R + L + +LM +A++F++A++
Sbjct: 211 CAAKFAEEKGVYRLLIVDSVMAMFRVDFSGRGELAERQQRLGQMLSRLMKIAEEFNVAVV 270
Query: 187 EPNLAT 192
N T
Sbjct: 271 ITNQMT 276
>gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium
GSS1]
gi|20139594|sp|Q97BJ9.1|RADA_THEVO RecName: Full=DNA repair and recombination protein RadA
gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1]
Length = 323
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 56/209 (26%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------------------QTAWDMLQEEQE 51
KL GY + +I AS D+S T +T ++L E ++
Sbjct: 27 KLRENGYDDIMAIAVASPKDLSDVTGIGEGAAAKIIAAARKFADIGNFETGEEIL-ERRK 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ ++TT +LD++LGGG+ + +TE G G GKTQ+ QLAVN +P E GG
Sbjct: 86 TIQKLTTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLAVNCTMPKEKGGFDSDV 145
Query: 112 IYIGKCLGFYTE---QSAVINYLDK------------FVSEHK--------------DVK 142
+ I F E Q A LD + S H+ +++
Sbjct: 146 MMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAKEFNIR 205
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLS 168
++I+DS+ HFR +V LA R ++L+
Sbjct: 206 LLIVDSLTAHFRSEYVGRGSLAERQQLLN 234
>gi|209944614|gb|ACI96538.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSASNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R + A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLENGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSLA 184
+ + L ++ LA
Sbjct: 198 LHESMRRLQRQHELA 212
>gi|296811726|ref|XP_002846201.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
gi|238843589|gb|EEQ33251.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
Length = 342
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D+ILGGG ++E+ G GK
Sbjct: 80 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDSILGGGFQSMSISEVYGEFRCGK 134
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GKA YI F E+ SA+ N Y
Sbjct: 135 TQLSHTMSVIAQLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 194
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 195 ALNSEHQLELLNTLAKEFASGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 254
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 255 HMAEEFNVCVLMTN 268
>gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus
fer1]
Length = 335
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 56/223 (25%)
Query: 15 KLISAGYTSLSSICSASSSD------ISRGT-----------------QTAWDMLQEEQE 51
KL GY + +I AS D I+ G +T ++L+ +E
Sbjct: 39 KLRENGYDDIMAIAVASPKDLADISGIAEGAAVKIINAARKYADVGNFETGEEILKRRKE 98
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ +++T LDN++GGG+ + +TE G G GKTQ+ +QLAVN +P E GGL
Sbjct: 99 -VRKLSTGAQGLDNLIGGGLETQSITEFFGEFGSGKTQIMLQLAVNATMPEEQGGLNSDV 157
Query: 112 IYIGKCLGFYTE---QSAVINYLDK------------FVSEHK--------------DVK 142
+ I F E Q A LD + + H+ +K
Sbjct: 158 LIIDTENTFRPERVIQMAKAKNLDPDETLKRIHVARAYNAHHQILLAEKASDIAKEFPIK 217
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DS+ HFR +V LA R ++L+ L+ F+
Sbjct: 218 LLIVDSLTSHFRSEYVGRGSLAERQQLLNKHMHDLLKFGTIFN 260
>gi|401430004|ref|XP_003879484.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495734|emb|CBZ31040.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 358
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 48 EEQESLARITTSCADLDNILGGG-IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+++ ++ RI+T LD +LGGG I R +TE G GKTQ+G L V Q+P+E GG
Sbjct: 112 QQRSTILRISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGG 171
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK------------ 139
GKA+Y+ F E+ I + LD + EH+
Sbjct: 172 GNGKAVYVDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMA 231
Query: 140 --DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + +L+ +A++F++A+ N
Sbjct: 232 EDQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITN 286
>gi|209944608|gb|ACI96535.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINYL---------------DKFVSEHKDVKVVIIDSIAFHFR 154
I+Y+ + + +H D K+++IDS+AF R
Sbjct: 139 LQKIHYVRCPKMDQLMATVLSCHRHLVDHPDXKLIVIDSLAFTXR 183
>gi|154345283|ref|XP_001568583.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134065920|emb|CAM43702.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 359
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 48 EEQESLARITTSCADLDNILGGG-IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+++ ++ RI+T LD +LGGG I R +TE G GKTQ+G L V Q+P+E GG
Sbjct: 113 QQRSTILRISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIGHTLCVTSQLPLEMGG 172
Query: 107 LGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK------------ 139
GK +Y+ F E+ I + LD + EH+
Sbjct: 173 GNGKVVYVDTEGTFRPERIRPIAERFGLDPNSVLDNILVARAYTHEHQAHLLSMVAAKMA 232
Query: 140 --DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + +LM +A++F++A+ N
Sbjct: 233 EDQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSQLMKIAEEFNVAVYITN 287
>gi|70982368|ref|XP_746712.1| meiotic recombination protein (Dmc1) [Aspergillus fumigatus Af293]
gi|66844336|gb|EAL84674.1| meiotic recombination protein (Dmc1), putative [Aspergillus
fumigatus Af293]
gi|159123045|gb|EDP48165.1| meiotic recombination protein (Dmc1), putative [Aspergillus
fumigatus A1163]
Length = 338
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 89 LSHQRKRVVKISTGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 148
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 149 GADGKVAYIDTEGTFRPERIAQIAERFSVDPDSAQENIAYARALNSEHQLELLNTLSREF 208
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ ++L ++A++F++ +L N
Sbjct: 209 AGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMRLAHMAEEFNVCVLMTN 264
>gi|363734477|ref|XP_001232262.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Gallus gallus]
Length = 371
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 40 QTAWDMLQEE--QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
QTA++M S A + TS LD +L GGI C +TE+ PG GKTQ I ++V
Sbjct: 82 QTAYEMKVRRSINPSAAFLPTSLHSLDKVLHGGIPCGSLTELTSPPGCGKTQFCITMSVL 141
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
+PV GGL G IYI F E+
Sbjct: 142 ATLPVSMGGLDGAVIYIDTESAFSAER 168
>gi|145952326|gb|ABP98984.1| DMC1 [Hieracium caespitosum]
gi|145952328|gb|ABP98985.1| DMC1 [Hieracium caespitosum]
Length = 343
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L ++++ RITT LD +LGGGI ++TE G
Sbjct: 75 KVDKICEAAEKIVNFGYITGSDALLR-RKAVVRITTGSQALDELLGGGIETLQITEAFGE 133
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 134 FRSGKTQLAHTLCVSTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDN 193
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 194 IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQM 253
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 254 LSRLTKIAEEFNVAVYMTN 272
>gi|358255195|dbj|GAA56912.1| DNA repair protein RAD51 homolog 3, partial [Clonorchis sinensis]
Length = 1681
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
I + C D +LGGG +TE+ G PG+GKTQ IQ + VQ+P FGGL G+A++I
Sbjct: 1410 IVSMCRSFDEMLGGGFPTGRLTELCGEPGVGKTQFCIQTCLTVQLPRWFGGLEGEAVFI 1468
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 126 AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLAL 185
A L +F +H V++V++DSIA FR+ F D+ R R+L+ +A +L+++A + +
Sbjct: 1535 ATCKRLQQFCEQHPKVRLVVVDSIALPFRYDFDDIPQRNRLLACVAQQLLSVATNYKAVV 1594
Query: 186 LEPNLATT 193
+ N TT
Sbjct: 1595 ILTNQITT 1602
>gi|148727866|gb|ABR08568.1| Dmc1 [Carassius auratus x Cyprinus carpio]
Length = 342
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 35/189 (18%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G QTA + + ++ L ITT + D +LGGG+ +TE G GKTQL L V
Sbjct: 86 GFQTASEYSIKRKQVL-HITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVT 144
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD-- 140
Q+P E+G GGK I+I F E+ AV++ Y + SEH+
Sbjct: 145 AQLPGEYGYPGGKVIFIDSENTFRPERLKDIADRFSVDHEAVLDNVLYARAYTSEHQMEL 204
Query: 141 --------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
K++IIDSI FR F +LA R + L+ + +L +++++++
Sbjct: 205 LDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNV 264
Query: 184 ALLEPNLAT 192
A+ N T
Sbjct: 265 AVFVTNQMT 273
>gi|344238785|gb|EGV94888.1| DNA repair protein XRCC3 [Cricetulus griseus]
Length = 215
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 41 TAWDMLQEEQ---ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+ + E R++ C LD LGGG+ +T++ G GKTQLG+QL +
Sbjct: 64 TALQLFQQRESFPEQHQRLSLGCPVLDQFLGGGLPLEGITDLAGRSSAGKTQLGLQLCLT 123
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHK----DVKVVIIDSIAFHF 153
VQ P ++GGL A+YI TE + L + + + + DV +I I F
Sbjct: 124 VQFPRQYGGLEAGAVYI------CTEDAFPSKRLWQLIEQQQQLRTDVPGEVIQKIRFS- 176
Query: 154 RHGFVDLA 161
H F++ A
Sbjct: 177 NHIFIEHA 184
>gi|209944606|gb|ACI96534.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 43/183 (23%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++ WD+ Q + +I T LD GGGI + E+ G G GKTQ+ +QL +NVQ
Sbjct: 33 KSCWDI---SQSAXNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQ 89
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQ------------------------SAVINY----- 130
IP GGL G A++I F+ ++ I+Y
Sbjct: 90 IPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPK 149
Query: 131 LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK 180
LD+ ++ +H D+K+++IDS+AF R D A R +L + + L ++
Sbjct: 150 LDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLELHESMRRLQRQ 208
Query: 181 FSL 183
L
Sbjct: 209 HEL 211
>gi|198436503|ref|XP_002123810.1| PREDICTED: similar to Dmc1 homolog [Ciona intestinalis]
Length = 282
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 24/185 (12%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+S ++ G TA + +++ + +++T DLD +LGGGI +TE+ G
Sbjct: 71 VDKIKEAASKMVTPGFVTALN-FSSKRKQVFKVSTGSEDLDKLLGGGIESMAITEVFGEF 129
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L+V QIP G +GGK +YI F +Q+AV++
Sbjct: 130 RTGKTQLSHTLSVTTQIPGAKGYMGGKVVYIDTENTFRPDRLRPIADRFNLDQNAVLDNV 189
Query: 130 -YLDKFVSEHKDVKVVIIDSIA--FHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
Y + SEH ++ ++D +A FH G L + V S +AL ++ + + LA
Sbjct: 190 MYARAYTSEH---QMELLDHVAAKFHEEAGIFKLLI---VDSVMALFRVDFSGRGELADR 243
Query: 187 EPNLA 191
+ LA
Sbjct: 244 QQKLA 248
>gi|330915672|ref|XP_003297116.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
gi|311330355|gb|EFQ94774.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
Length = 338
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 57/238 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISR------------------------GTQTAW 43
I A KL + GY +++S+ SA+ ++ + G QTA
Sbjct: 28 IGAVDIAKLKANGYYTIASVHSATRRNLLKIKGFSEIKVDKVKDAIGKCQPSGGGFQTAH 87
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
++ Q+ + + +I+T LD +LGGG ++E+ G GKTQL ++V Q+P +
Sbjct: 88 ELGQQRKRVI-KISTGSKALDAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVITQLPKD 146
Query: 104 FGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK--------- 139
GG GK YI F E+ A I Y SEH+
Sbjct: 147 MGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMELLNKVAE 206
Query: 140 -----DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +L R + L+ KL ++A++F++A+L N
Sbjct: 207 FFVSNEYRLLIIDSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTN 264
>gi|147805615|emb|CAN71783.1| hypothetical protein VITISV_028799 [Vitis vinifera]
Length = 348
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ IC A+ ++ G T D L ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 VDKICEAAEKIVNFGYITGSDALLR-RKSVVRITTGSQALDELLGGGIETSAITEAFGEF 135
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN-- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 136 RSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDNI 195
Query: 130 -YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 196 IYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLAQML 255
Query: 172 LKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 256 SRLTKIAEEFNVAVYMTN 273
>gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
Length = 332
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 55/242 (22%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASS---------SDIS-------------RGT 39
E+ K IS KL+ AGY ++ ++ A SDI G
Sbjct: 19 ELKKAGISLADINKLVEAGYNTVEALAYAPKKQLLTIKGFSDIKVDKLIKEAAKFVPMGF 78
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
TA E+++ L +TT ++LD +L GG +TE+ G GKTQL +AV Q
Sbjct: 79 TTA-SAYHEKRKDLVYLTTGSSELDKLLNGGFESGSITEVFGEFRTGKTQLCHTVAVTCQ 137
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQS---------------AVINYLDKFVSEHK----- 139
+P E GG GKA+YI F +E+ I+Y + S+H+
Sbjct: 138 LPPEQGGASGKAMYIDTEGTFRSERIFPIAERYGLNPEDVLENISYARAYNSDHQSQLLV 197
Query: 140 ---------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187
V+IIDS +R F +L R L+ L+NLA+ + +A++
Sbjct: 198 QASALMSTSKYSVLIIDSATALYRTDFSGRGELGARQISLARYLRDLVNLAETYQVAVII 257
Query: 188 PN 189
N
Sbjct: 258 TN 259
>gi|449328634|gb|AGE94911.1| DNA repair protein rad51 like-protein [Encephalitozoon cuniculi]
Length = 334
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 98/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASS---------SDIS-------------RGTQTAWDM 45
I A KLI AG+T++ S+ A SDI G TA
Sbjct: 27 ILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGFSDIKVDKLIKEAAKLVPMGFTTASAY 86
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L +TT +++D +L GG +TEI G GKTQL +AV Q+P E G
Sbjct: 87 HQRRSE-LVYLTTGSSEVDKLLSGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQG 145
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHKD---------- 140
G GGKA+YI F +E+ I+Y + S+H+
Sbjct: 146 GGGGKAMYIDTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMM 205
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V+IIDS +R F +L R L+ L+NLA+ F +A++ N
Sbjct: 206 SESKYSVLIIDSATALYRTDFSGRGELGARQLHLAKYLRSLVNLAETFRIAVIITN 261
>gi|339234621|ref|XP_003378865.1| DNA repair and recombination protein RadA [Trichinella spiralis]
gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis]
Length = 364
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I S +S + G TA D Q+ E + +ITT +LD +L GGI +TE+ G G
Sbjct: 98 ILSEASKLVPMGFTTATDFHQKRSE-IIQITTGSKELDKLLQGGIETGSITEVFGEFRTG 156
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII 146
KTQL LAV Q+PV+ GG GK +YI F E+ +++ D+F DV +
Sbjct: 157 KTQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPER--LLSVADRFQLSGPDV----L 210
Query: 147 DSIAF 151
D++A+
Sbjct: 211 DNVAY 215
>gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
Length = 334
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 98/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASS---------SDIS-------------RGTQTAWDM 45
I A KLI AG+T++ S+ A SDI G TA
Sbjct: 27 ILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGFSDIKVDKLIKEAAKLVPMGFTTASAY 86
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L +TT +++D +L GG +TEI G GKTQL +AV Q+P E G
Sbjct: 87 HQRRSE-LVYLTTGSSEVDKLLSGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQG 145
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHKD---------- 140
G GGKA+YI F +E+ I+Y + S+H+
Sbjct: 146 GGGGKAMYIDTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMM 205
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V+IIDS +R F +L R L+ L+NLA+ F +A++ N
Sbjct: 206 SESKYSVLIIDSATALYRTDFSGRGELGARQLHLAKYLRSLVNLAETFRIAVIITN 261
>gi|14571806|dbj|BAB61097.1| RiLim15 [Oryza sativa Indica Group]
Length = 344
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 33/227 (14%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ +S+G T D+L + ++S+ RITT L +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKLLSQGFITGSDLLIK-RKSVVRITTGSQALYKLLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P+ G GK YI F E+ +AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217
+L +A++F++A+ N +T L+ VA AA
Sbjct: 255 LSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHRVAHAA 301
>gi|297737116|emb|CBI26317.3| unnamed protein product [Vitis vinifera]
Length = 348
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ IC A+ ++ G T D L ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 VDKICEAAEKIVNFGYITGSDALLR-RKSVVRITTGSQALDELLGGGIETSAITEAFGEF 135
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN-- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 136 RSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDNI 195
Query: 130 -YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 196 IYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLAQML 255
Query: 172 LKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 256 SRLTKIAEEFNVAVYMTN 273
>gi|359477566|ref|XP_002279369.2| PREDICTED: LOW QUALITY PROTEIN: meiotic recombination protein DMC1
homolog [Vitis vinifera]
Length = 361
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ IC A+ ++ G T D L ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 VDKICEAAEKIVNFGYITGSDALLR-RKSVVRITTGSQALDELLGGGIETSAITEAFGEF 135
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN-- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 136 RSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDNI 195
Query: 130 -YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 196 IYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLAQML 255
Query: 172 LKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 256 SRLTKIAEEFNVAVYMTN 273
>gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5]
gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5]
Length = 315
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 35/183 (19%)
Query: 37 RGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
RG + A + Q E +TT LD +L GG+ +E+ E G G GKTQL QL+V
Sbjct: 71 RGDEYASQLSQRES-----LTTGVKALDELLEGGLVTQEIYEFAGEYGSGKTQLCHQLSV 125
Query: 97 NVQIPVEFGGLGGKAIYI---------------------GKCLGFYTEQSAVINYLDKFV 135
Q+P GGLGGK +Y+ G G Y + ++ L++ V
Sbjct: 126 TAQLPPSRGGLGGKVVYVDTEGTFSPSRIERIAERFGVEGALEGVYVARPISVDELEELV 185
Query: 136 SE------HKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186
+ VK+V+IDS+ +R F LA+R + ++ L LA+ +S+ ++
Sbjct: 186 IKGLKPLLKGGVKLVVIDSVIALYRAQFRGREWLAMRQQRINYALDWLKRLARVYSIVVV 245
Query: 187 EPN 189
N
Sbjct: 246 ITN 248
>gi|255954943|ref|XP_002568224.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589935|emb|CAP96090.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 351
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D IL GG ++E+ G GKTQL ++V Q+P E G
Sbjct: 102 LHHQRKKVVRISTGSKQFDAILNGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKELG 161
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G G+ YI F E+ A I+Y SEH+
Sbjct: 162 GAAGRVAYIDTEGTFRPERIAQIAERFGLDPDTAQENISYARALNSEHQLELLNTLSQAF 221
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ ++++IDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 222 VGGEYRLLVIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 277
>gi|291225163|ref|XP_002732570.1| PREDICTED: X-ray repair complementing defective repair in Chinese
hamster cells 3-like [Saccoglossus kowalevskii]
Length = 383
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEEQESLARI 56
M+V++L + + A T ++C S++D+SR T +L E +S+ RI
Sbjct: 1 MDVNELELHPRILDAIKRAKLTVEKTLC-LSAADLSRLTKLSTSDVGHLLYEVSKSVPRI 59
Query: 57 T----------------------TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
T C LD+ L GGI + +TEI G GKTQL +QL
Sbjct: 60 PMAIALDIKEERCHASLKVRYVKTGCEVLDDFLRGGILSQGITEIAGESAAGKTQLCMQL 119
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVINYLDK----------------FVSE 137
+ VQ+P GGL G A+YI F +++ +I Y ++ FV
Sbjct: 120 CLTVQLPCHMGGLAGGAVYICTEDVFPSKRLHQMIKYFNRKLGPELEMQLAVGDHIFVEH 179
Query: 138 HKD--------------------VKVVIIDSIAFHFR--HGFVDLALRTRVLSGIALKLM 175
D VK ++IDSIA FR + F + A R L +L
Sbjct: 180 ASDQESLWKCINQRVPVLLARGMVKFIVIDSIAALFRGEYDFSEAAKRAHHLRSFGDQLR 239
Query: 176 NLAKKFS 182
L ++++
Sbjct: 240 KLNQQYN 246
>gi|148727864|gb|ABR08567.1| Dmc1 [Carassius auratus x Cyprinus carpio x Carassius cuvieri]
Length = 342
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 35/189 (18%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G QTA + +++ + ITT + D +LGGG+ +TE G GKTQL L V
Sbjct: 86 GFQTASE-YSVKRKQVFHITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVT 144
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD-- 140
Q+P E+G GGK I+I F E+ AV++ Y + SEH+
Sbjct: 145 AQLPGEYGYTGGKVIFIDSENTFRPERLKDIADRFSVDHEAVLDNVLYARAYTSEHQMEL 204
Query: 141 --------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
K++IIDSI FR F +LA R + L+ + +L +++++++
Sbjct: 205 LNFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNV 264
Query: 184 ALLEPNLAT 192
A+ N T
Sbjct: 265 AVFVTNQMT 273
>gi|209944586|gb|ACI96524.1| spindle D [Drosophila melanogaster]
gi|209944594|gb|ACI96528.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S + ++ WD+ Q + +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENFRIFDKSCWDI---SQSASNKILTGKKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------------ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKM 138
Query: 125 SAVINY-----LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169
I+Y LD+ ++ +H D+K+++IDS+AF R D A R +L
Sbjct: 139 LQKIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLE 197
Query: 170 IALKLMNLAKKFSL 183
+ + L ++ L
Sbjct: 198 LHESMRRLQRQHEL 211
>gi|409194654|gb|AFV31617.1| Dmc1 [Acanthopagrus schlegelii]
Length = 342
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A+ ++ G QTA++ +++ + ITT + D +LGGGI +TE G
Sbjct: 71 KVEKIKEAAGKMLNVGFQTAFE-YSAKRKQVFHITTGSQEFDKLLGGGIESMAITEAFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P E G GGK I+I F + AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGEDGYSGGKVIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLSRLQKISEEYNVAVFVTNQMT 273
>gi|401828066|ref|XP_003888325.1| DNA repair protein Rad51 [Encephalitozoon hellem ATCC 50504]
gi|392999597|gb|AFM99344.1| DNA repair protein Rad51 [Encephalitozoon hellem ATCC 50504]
gi|396082442|gb|AFN84051.1| DNA repair protein Rad51 [Encephalitozoon romaleae SJ-2008]
Length = 334
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 98/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASS---------SDIS-------------RGTQTAWDM 45
I A KLI AG+T++ S+ A SDI G TA
Sbjct: 27 ILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGFSDIKVDKLIKEAAKLVPMGFTTASAY 86
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L +TT +++D +L GG +TEI G GKTQL +AV Q+P E G
Sbjct: 87 HQRRSE-LVYLTTGSSEVDKLLNGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQG 145
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHKD---------- 140
G GGKA+YI F +E+ I+Y + S+H+
Sbjct: 146 GGGGKAMYIDTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMM 205
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V+IIDS +R F +L R L+ L+NLA+ F +A++ N
Sbjct: 206 SESKYSVLIIDSATALYRTDFSGRGELGARQLHLAKYLRSLVNLAETFRVAVIITN 261
>gi|323355789|gb|EGA87603.1| Rad57p [Saccharomyces cerevisiae VL3]
Length = 253
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG------- 115
+D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 1 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPT 60
Query: 116 -------------KCLGFYTEQSAVINYLDKFVSEH--------------KDVKVVIIDS 148
+ LG ++ D EH +K+VIIDS
Sbjct: 61 QRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIIDS 120
Query: 149 IAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTC 203
I+ H R + + R L +A KL LA +SL+++ N LA S +
Sbjct: 121 ISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPLANSPV-- 178
Query: 204 LRDSGSRKAVAAAAAQLGFVL 224
R V QLG+++
Sbjct: 179 ----AHRTYVTDYDYQLGWLV 195
>gi|340058421|emb|CCC52777.1| putative recombinase rad51 [Trypanosoma vivax Y486]
Length = 588
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 47 QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
QEE + + ++TT C LD ILGGG+ +TEI G PG+GKTQL +QLAVN +P GG
Sbjct: 171 QEENKKVEKVTTFCRSLDIILGGGMMVGGLTEICGPPGVGKTQLLMQLAVNCTLPRRLGG 230
Query: 107 LGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152
L G ++I TE S V + + V + VK V D++ FH
Sbjct: 231 LEGACLFID------TEGSFVPDRFHEIV--YAAVKDVKEDTL-FH 267
>gi|448560494|ref|ZP_21633942.1| DNA repair and recombination protein RadA [Haloferax prahovense DSM
18310]
gi|445722144|gb|ELZ73807.1| DNA repair and recombination protein RadA [Haloferax prahovense DSM
18310]
Length = 343
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL GY + SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLTDTGYDTYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPELGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E ++ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSIDDEETMKALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
LM + F+ +L N
Sbjct: 259 HDLMRIGDLFNTGILVTN 276
>gi|425773056|gb|EKV11430.1| Meiotic recombination protein (Dmc1), putative [Penicillium
digitatum Pd1]
gi|425778833|gb|EKV16938.1| Meiotic recombination protein (Dmc1), putative [Penicillium
digitatum PHI26]
Length = 338
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D+IL GG ++E+ G GKTQL ++V Q+P E G
Sbjct: 89 LHHQRKKVVRISTGSKQFDSILNGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPRESG 148
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G G+ YI F E+ A I+Y SEH+
Sbjct: 149 GAAGRVAYIDTEGTFRPERIAQIAERFGIDPDTAQENISYARALNSEHQLELLNTLSQAF 208
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ ++++IDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 209 AGGEYRLLVIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 264
>gi|440898955|gb|ELR50346.1| DNA repair protein XRCC3 [Bos grunniens mutus]
Length = 340
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 45/195 (23%)
Query: 45 MLQEE---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
+L++E E R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ+P
Sbjct: 67 LLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQLP 126
Query: 102 VEFGGLGGKAIYIGKCLGF---------------------------------YTEQSAVI 128
GGLG A+Y+ F + E +A +
Sbjct: 127 PRHGGLGAGAVYVCTEDAFPSHRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAADV 186
Query: 129 NYLDKFVSEHKDV-------KVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAK 179
+ L + V E V ++V+IDS+A FR F LALR + L + +L L+
Sbjct: 187 DTLLQCVKEKVPVLLARGMARLVVIDSVAAPFRCEFDGAALALRAQRLLALGAELRRLSC 246
Query: 180 KFSLALLEPNLATTA 194
F +L N T A
Sbjct: 247 AFRSPVLCVNQVTEA 261
>gi|323338366|gb|EGA79593.1| Rad57p [Saccharomyces cerevisiae Vin13]
Length = 216
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG------- 115
+D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 1 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPT 60
Query: 116 -------------KCLGFYTEQSAVINYLDKFVSEH--------------KDVKVVIIDS 148
+ LG ++ D EH +K+VIIDS
Sbjct: 61 QRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIIDS 120
Query: 149 IAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTC 203
I+ H R + + R L +A KL LA +SL+++ N LA S +
Sbjct: 121 ISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPLANSPV-- 178
Query: 204 LRDSGSRKAVAAAAAQLGFVL 224
R V QLG+++
Sbjct: 179 ----AHRTYVTDYDYQLGWLV 195
>gi|255086169|ref|XP_002509051.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
gi|226524329|gb|ACO70309.1| DMC1 DNA recombinase [Micromonas sp. RCC299]
Length = 359
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 57/245 (23%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSA-----------SSSDISRGTQTAWDMLQEEQ 50
E+ + +SAT K+ AG+ ++ S+ + S + + + + A +L ++Q
Sbjct: 43 ELQQCGVSATDIKKVKDAGFATVKSLLTVPKKTLIDVKGLSDAKVDKMLEAANKLLPKDQ 102
Query: 51 --------------ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
+ I T +D ILGGG+ R +TE+ G GKTQ+ LAV
Sbjct: 103 AGSFVTAKEWMSMRKDTINIRTGADTIDAILGGGVPTRSITEMYGEWRCGKTQICHTLAV 162
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHKD- 140
Q+P++ GG K +I F E+ AV++ + F E D
Sbjct: 163 TTQLPLDEGGGCAKVAFIDTEGTFRAERIVQIAERFNLDSDAVLDNILVARTFTHEMMDN 222
Query: 141 -------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
K++IIDSI HFR F+ +L+ R + L KL +A +F++A
Sbjct: 223 ALTLLAGKFSEEPFKILIIDSIMAHFRVDFIGRGELSERQQRLGQFLAKLNKIADEFNIA 282
Query: 185 LLEPN 189
++ N
Sbjct: 283 VVYTN 287
>gi|79565337|ref|NP_180423.3| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|330253046|gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 371
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD+ L GGI
Sbjct: 40 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
>gi|57283105|emb|CAD70704.1| putative DNA recombination protein [Arabidopsis thaliana]
Length = 371
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD+ L GGI
Sbjct: 40 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
>gi|112982765|ref|NP_001037552.1| Dmc1 homolog [Bombyx mori]
gi|2058711|gb|AAB53331.1| Dmc1 homolog [Bombyx mori]
Length = 341
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 22 TSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81
T + I A ++ G TA + + + ++ + +I+T +LD +L GGI +TE+ G
Sbjct: 69 TKVEKIKEACQKVVTLGFMTALE-VSDRRKQVFKISTGSTELDKLLAGGIESMAITEVFG 127
Query: 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT------------EQSAVIN 129
GKTQL L V QIP G GGK +++ F +Q+AV++
Sbjct: 128 EFRTGKTQLSHTLCVTTQIPNSKGYQGGKVMFLDTEHTFRPDRLRPIADRFNLDQNAVLD 187
Query: 130 ---YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVL 167
Y + SEH+ K++IIDSI FR F +LA R + L
Sbjct: 188 NVLYARAYTSEHQAELLDYVAAKFHEEAGVFKLLIIDSIMALFRVDFSGRGELADRQQKL 247
Query: 168 SGIALKLMNLAKKFSLALLEPNLAT 192
+ + +L +++++++A+ N T
Sbjct: 248 AQVLSRLQKISEEYNVAVFITNQMT 272
>gi|79323389|ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|83305358|sp|Q9SK02.2|RA51B_ARATH RecName: Full=DNA repair protein RAD51 homolog 2; Short=AtRAD51B
gi|58430738|dbj|BAD89163.1| AtRAD51Balpha [Arabidopsis thaliana]
gi|330253047|gb|AEC08141.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 370
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD+ L GGI
Sbjct: 40 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 142
>gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis]
Length = 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 59/238 (24%)
Query: 8 ISATQRGKLISAGYTSLSSIC----------------------SASSSDISRG--TQTAW 43
I+A KL AGY ++ S+ +A+S I G T T +
Sbjct: 11 INAATVKKLQEAGYHTVESVAFETMKKLVEVKGISEVNAQKLQAAASKLIPMGFTTATEY 70
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
L+E+ + I+T C +LD ILGGG+ +TE+ G GKTQ+ L V Q+P+
Sbjct: 71 SKLRED---IVHISTGCKELDRILGGGMETGSITELYGEFRTGKTQMCHTLCVICQLPIS 127
Query: 104 FGGLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHKD-------- 140
GG GKA+YI F E+ I+ Y + SEH+
Sbjct: 128 QGGGEGKALYIDTENTFRPERLIQISKRFGLNPDDVLDNVTYARAYNSEHQQQLLIQAAA 187
Query: 141 ------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+VI+DS FR + +L+ R + L+ L LA +F +A++ N
Sbjct: 188 LMAESRYALVIVDSATALFRTDYTGRGELSTRQQSLAQFLRGLQKLADEFGVAVVITN 245
>gi|146330537|gb|ABQ23182.1| Dmc1 [Carassius auratus]
Length = 342
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 34/178 (19%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
+++ + ITT + D +LGGG+ +TE G GKTQL L V Q+P E+G G
Sbjct: 96 KRKQVFHITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYPG 155
Query: 109 GKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD------------- 140
GK I+I F E+ AV++ Y + SEH+
Sbjct: 156 GKVIFIDSENTFRPERLKDIADRFSVDHEAVLDNVLYARAYTSEHQMELLDFVAAKFHEE 215
Query: 141 ---VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++IIDSI FR F +LA R + L+ + +L +++++++A+ N T
Sbjct: 216 GGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 273
>gi|327259038|ref|XP_003214345.1| PREDICTED: DNA repair protein XRCC3-like [Anolis carolinensis]
Length = 375
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 66/257 (25%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQ-------------------- 40
M++ +L ++ + A S+ I + S SD+ R T+
Sbjct: 25 MDLDQLDVNPRVIAAIKRANLKSVREIFNLSQSDLQRVTKLSSVDVQYLLKTISSAVRKK 84
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + +++ + +++ C LD L GGI +TEI G GKTQ+ +QLA++
Sbjct: 85 HVLTALQLFKDKNQR-RKLSLGCPVLDGFLQGGIPLTGITEIAGESSAGKTQIALQLALS 143
Query: 98 VQIPVEFGGLGGKAIYI-------GKCLGFYTEQSA------------VINYLDKFVSEH 138
+Q P ++GGL A+YI K L +Q A I + ++ EH
Sbjct: 144 IQYPYKYGGLESGAVYICTEDAFPNKRLQQLIQQQANLRDDVPPIVVQKIKFGNRIFVEH 203
Query: 139 KD---------------------VKVVIIDSIAFHFR--HGFVDLALRTRVLSGIALKLM 175
V+++I+DSIA FR G D L+ + L KL
Sbjct: 204 TADLDAFRNCITNRIGILLSRGMVRLIIVDSIAALFRCEFGAKDSVLKAKYLLMFGAKLH 263
Query: 176 NLAKKFSLALLEPNLAT 192
L+ +F + ++ N T
Sbjct: 264 ELSSQFQIPIVCINQVT 280
>gi|186503833|ref|NP_001118403.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|330253048|gb|AEC08142.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 338
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD+ L GGI
Sbjct: 8 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGI 67
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 68 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110
>gi|238479387|ref|NP_001154538.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|58430740|dbj|BAD89164.1| AtRAD51Bbeta [Arabidopsis thaliana]
gi|330253049|gb|AEC08143.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 243
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD+ L GGI
Sbjct: 8 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGI 67
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 68 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110
>gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
Length = 334
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 98/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASS---------SDIS-------------RGTQTAWDM 45
I A KLI AG+T++ S+ A SD+ G TA
Sbjct: 27 ILAVDIAKLIEAGFTTVESLAFAPKRQLLSIKGFSDVKVDKLIKEAAKLVPMGFTTASAY 86
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L +TT +++D +L GG +TEI G GKTQL +AV Q+P E G
Sbjct: 87 HQRRSE-LVYLTTGSSEVDKLLNGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQG 145
Query: 106 GLGGKAIYIGKCLGFYTEQ---------------SAVINYLDKFVSEHKD---------- 140
G GGKA+YI F +E+ I+Y + S+H+
Sbjct: 146 GGGGKAMYIDTEGTFRSERLIPIAERFGLDPDEVMDNISYARAYNSDHQSQLLIKASAMM 205
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V+IIDS +R F +L R L+ L+NLA+ F +A++ N
Sbjct: 206 SESKYSVLIIDSATALYRTDFSGRGELGARQLHLAKYLRSLVNLAETFRVAVIITN 261
>gi|367015798|ref|XP_003682398.1| hypothetical protein TDEL_0F03760 [Torulaspora delbrueckii]
gi|359750060|emb|CCE93187.1| hypothetical protein TDEL_0F03760 [Torulaspora delbrueckii]
Length = 334
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LD++LGGGI +TE+ G GKTQ+ L + Q+P E GG GK YI
Sbjct: 96 LSTGSKQLDSVLGGGIMTMSITEVFGEFRCGKTQMAHTLCITAQLPREMGGGEGKVAYID 155
Query: 116 KCLGFYTEQSAV---------------INYLDKFVSEHK--------------DVKVVII 146
F E+ I+Y SEH+ D +++++
Sbjct: 156 TEGTFRPERIKQIAERYGLDPEACLENISYARALNSEHQMELAEQLGEELSSGDYRLIVV 215
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ KL LA++F++A+ N
Sbjct: 216 DSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNIAIFMTN 261
>gi|351726994|ref|NP_001238425.1| meiotic recombination protein DMC1 homolog [Glycine max]
gi|3219787|sp|Q96449.1|DMC1_SOYBN RecName: Full=Meiotic recombination protein DMC1 homolog
gi|1518157|gb|AAB07025.1| RecA/Rad51/DMC1-like protein [Glycine max]
Length = 345
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ RITT LD +LGGG+ +TE G
Sbjct: 77 KVDKICEAAEKLVNFGYITGSDALLK-RKSVIRITTGSQALDELLGGGVETSAITEAFGE 135
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 136 FRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 195
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 196 IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFSGRGELADRQQKLAQM 255
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 256 LSRLIKIAEEFNVAVYMTN 274
>gi|281354182|gb|EFB29766.1| hypothetical protein PANDA_007427 [Ailuropoda melanoleuca]
Length = 331
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 22 TSLSSI-----CSASSSDISRGTQ--TAWDMLQEEQESLA---RITTSCADLDNILGGGI 71
TSLSS+ +SS + RG+ TA + Q++Q A R++ C LD +L GG+
Sbjct: 21 TSLSSLDVQHLLRTASSQV-RGSSVFTALHLYQQKQRFPAQHQRLSLGCPVLDGLLRGGL 79
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYL 131
+TE+ G GKTQL +QL + VQ P + GGLG A+YI C TE L
Sbjct: 80 PLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAVYI--C----TEDVFPNLRL 133
Query: 132 DKFVSEHK----DVKVVIIDSIAF 151
+ +++ + DV ++D I F
Sbjct: 134 QQLIAQQRHLRTDVPGDVVDRIKF 157
>gi|301766940|ref|XP_002918902.1| PREDICTED: DNA repair protein XRCC3-like [Ailuropoda melanoleuca]
Length = 349
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQ--TAWDMLQEEQESLA---RITTSCADLDNILGG 69
+L S + + +SS + RG+ TA + Q++Q A R++ C LD +L G
Sbjct: 37 RLTSLSSLDVQHLLRTASSQV-RGSSVFTALHLYQQKQRFPAQHQRLSLGCPVLDGLLRG 95
Query: 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN 129
G+ +TE+ G GKTQL +QL + VQ P + GGLG A+YI C TE
Sbjct: 96 GLPLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAVYI--C----TEDVFPNL 149
Query: 130 YLDKFVSEHK----DVKVVIIDSIAF 151
L + +++ + DV ++D I F
Sbjct: 150 RLQQLIAQQRHLRTDVPGDVVDRIKF 175
>gi|304569601|gb|ADM45305.1| Dmc1 [Litopenaeus vannamei]
Length = 341
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E++ + R++T A+LD +LGGGI +TE+ G GKTQ+ L V QIP E G
Sbjct: 93 EKRRLVFRVSTGSAELDALLGGGIESMAITEVFGEFRTGKTQISHTLCVTAQIPNEAGTY 152
Query: 108 -GGKAIYIGKCLGFYT------------EQSAVIN---YLDKFVSEHK------------ 139
GGK I+I F EQ AV++ Y F SEH+
Sbjct: 153 SGGKVIFIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFH 212
Query: 140 ----DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++I+DS+ FR F +LA R + L+ +L +++++++++ N T
Sbjct: 213 EEPGIFKLLIVDSVMALFRVDFSGRGELADRQQKLAQYMSRLQKISEEYNVSVFITNQMT 272
>gi|326427154|gb|EGD72724.1| DMC1 protein [Salpingoeca sp. ATCC 50818]
Length = 340
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA + L+ Q+ I+T +LD ILGGGI +++TEI G GK+Q+ + L ++ Q+
Sbjct: 87 TAANFLEARQQVFF-ISTGAKELDAILGGGIESQQITEIHGEYRTGKSQICMTLCISAQV 145
Query: 101 PV-EFGGLGGKAIYI------------GKCLGFYTEQSAVIN---YLDKFVSEHKD---- 140
P E GGK IYI G C F + A +N + + SE
Sbjct: 146 PTDETNYSGGKVIYIDTEGAFRPERLEGICDRFNVDYQAALNNVYFCRAYNSEQLATLMA 205
Query: 141 ------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
V+++IIDSI FR + +LA R ++L+ + + LA++++LA+
Sbjct: 206 DVGAILAQEAGIVRLLIIDSIMATFRTDYCGRGELAERQQMLNQVLAAIKRLAEEWNLAV 265
Query: 186 LEPN 189
+ N
Sbjct: 266 VLTN 269
>gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis]
Length = 333
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 55/230 (23%)
Query: 14 GKLISAGYTSLSSICSASS---------SDI-------------SRGTQTAWDMLQEEQE 51
KLI AGY S+ ++ A SD+ G TA Q+ QE
Sbjct: 32 NKLIEAGYNSVEALAYAPKKQLLTIKGFSDVKVDRLIKEAAKLVPMGFTTASAYHQKRQE 91
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ ++T ++LD +L GGI +TEI G GKTQ+ +AV Q+P E GG GKA
Sbjct: 92 -VVYLSTGSSELDKLLNGGIESGSITEIFGEFRTGKTQICHTVAVTCQLPPEQGGANGKA 150
Query: 112 IYIGKCLGFYTEQ------------SAV---INYLDKFVSEHKD--------------VK 142
+YI F +E+ + V I+Y + S+H+
Sbjct: 151 LYIDTEGTFRSERFFPIAERYGLDPTEVLDNISYARAYNSDHQSQLLIQASSLMSQNKYA 210
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
V+IIDS +R F +L R L+ L+N+A+ F +A++ N
Sbjct: 211 VLIIDSATALYRTDFSGRGELGARQISLARYLRDLVNIAETFHVAVIITN 260
>gi|300122361|emb|CBK22933.2| unnamed protein product [Blastocystis hominis]
gi|300122364|emb|CBK22936.2| unnamed protein product [Blastocystis hominis]
gi|300122845|emb|CBK23852.2| unnamed protein product [Blastocystis hominis]
Length = 333
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 32/164 (19%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
+E + I+T C +LD ILGGG+ +TE+ G GKTQL L V Q+PVE GG G
Sbjct: 91 REDIIHISTGCKELDAILGGGMETGSLTELYGEFRTGKTQLCHTLCVICQLPVEQGGGEG 150
Query: 110 KAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHK--------------D 140
KA+YI F E+ A I+ Y + SEH+
Sbjct: 151 KALYIDTEGTFRPERLAQISQRFGLDPNDVMDNVAYARAYNSEHQMQLLMQAGALMSESR 210
Query: 141 VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKF 181
+VI+DS FR + +L+ R + L+ L LA +F
Sbjct: 211 FALVIVDSATALFRTDYTGRGELSTRQQNLAQFLRGLQKLADEF 254
>gi|183397237|gb|ACC62173.1| Dmc1 [Penaeus monodon]
Length = 341
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E++ + R++T A+LD +LGGGI +TE+ G GKTQ+ L V QIP E G
Sbjct: 93 EKRRLVFRVSTGSAELDALLGGGIESMAITEVFGEFRTGKTQISHTLCVTAQIPNEAGTY 152
Query: 108 -GGKAIYIGKCLGFYT------------EQSAVIN---YLDKFVSEHK------------ 139
GGK I+I F EQ AV++ Y F SEH+
Sbjct: 153 SGGKVIFIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFH 212
Query: 140 ----DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++I+DS+ FR F +LA R + L+ +L +++++++++ N T
Sbjct: 213 EEPGIFKLLIVDSVMALFRVDFSGRGELADRQQKLAQYMSRLQKISEEYNVSVFITNQMT 272
>gi|299756148|ref|XP_001829128.2| Rad51 [Coprinopsis cinerea okayama7#130]
gi|298411544|gb|EAU92763.2| Rad51 [Coprinopsis cinerea okayama7#130]
Length = 364
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 50/194 (25%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG-----------------IGKT 88
+Q++++ + I+T +D ILGGG+ + +TE P GKT
Sbjct: 100 IQDKRKRVLVISTGSKLVDGILGGGVMSQSITEGSSYPSHYLCSASDLAPVYGEYRTGKT 159
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN---------------YLDK 133
QL ++V Q+P E+GG GK YI F ++ I Y
Sbjct: 160 QLAHTMSVVAQLPPEYGGAAGKVAYIDTEGTFRPDRIRAIADRFGVDGTMALENILYARA 219
Query: 134 FVSEH---------------KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLM 175
F SEH KD +++IIDSI FR G +L+ R + L+ + KL
Sbjct: 220 FNSEHQMELINECSARFAEDKDFRLLIIDSIMALFRVDYSGRGELSERQQKLAQMLSKLT 279
Query: 176 NLAKKFSLALLEPN 189
L+++F++A+L N
Sbjct: 280 KLSEEFNIAVLMTN 293
>gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum
hungatei JF-1]
gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum
hungatei JF-1]
Length = 407
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 4 SKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADL 63
+ LP + + +L A + C +DI G +T D+ E++ + ++ T ++
Sbjct: 118 TSLPATLAEAAELGEATAKKMIKWCR-DQADIG-GFKTGTDVF-EQRLKVKKLRTLVPEV 174
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D +LGGG + +TE+ G G GK+Q+ Q+AVNVQ+P E GGL G IY+ F E
Sbjct: 175 DELLGGGFETQAITEMYGEFGSGKSQIVHQMAVNVQLPEELGGLNGSVIYVDTENTFRPE 234
Query: 124 Q 124
+
Sbjct: 235 R 235
>gi|57529909|ref|NP_001006489.1| DNA repair protein XRCC3 [Gallus gallus]
gi|53127776|emb|CAG31217.1| hypothetical protein RCJMB04_3f19 [Gallus gallus]
Length = 347
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+++ C+ LD++L GGI +TE+ G GKTQ+G+QL + VQ P +GGL A+YI
Sbjct: 81 KLSLGCSVLDDLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYRYGGLESGAVYI 140
Query: 115 GKCLGF---------------------------------YTEQSAVINYLDKFVSEHKD- 140
F + E +A ++ +++
Sbjct: 141 CTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKIRFGNSIFVEHAADLDTFHNCITKRLSL 200
Query: 141 ------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
V++V+IDSIA FR F D L+ R L +L L+ +F ++ N T
Sbjct: 201 LLTRGMVRLVVIDSIAALFRCEFGASDSVLKARYLQTFGAQLHGLSTRFRTPIMCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 DA 262
>gi|392348948|ref|XP_576058.4| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
2-like [Rattus norvegicus]
Length = 350
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LNLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLGAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TE+ G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATLPTRLGGLEGAVLYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCQELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
SIA R F ++ R + L A L L+ +FS+ ++ N TT
Sbjct: 211 SIASVVRKEFDPQLQGNIKERNKFLGKGASLLKYLSGEFSVPVILTNQITT 261
>gi|294944311|ref|XP_002784192.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
ATCC 50983]
gi|239897226|gb|EER15988.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
ATCC 50983]
Length = 335
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 57/245 (23%)
Query: 2 EVSKLP---ISATQRGKLISAG--------YTSLSSICS--------------ASSSDIS 36
E+ KL I+A KL AG YT+ +CS A+ S
Sbjct: 19 EIEKLQDAGINAADLRKLKEAGLNTAMAVIYTTKRDLCSIKGLSEQKVEKIQEAARKLTS 78
Query: 37 RGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G T + ++ + + R++T + +D +LGGGI +TE G GKTQL L+V
Sbjct: 79 AGFITGSEFVRTKCKKRFRLSTGSSKVDQLLGGGIESCSITEFYGEFRCGKTQLCHSLSV 138
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDKFV------SEH--- 138
Q+P +GG GK YI F ++ I LD + SEH
Sbjct: 139 IAQMPQSYGGANGKVCYIDTENTFRPDRITQIAQAFGVDPQQVLDNIIYARCYNSEHLVQ 198
Query: 139 -----------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
+ ++++DSI FR F DLA R ++LS + +L L+++++LA
Sbjct: 199 LLLCVAAKMAEEKYALLVVDSIMGPFRVDFTGRGDLAERQQLLSRVMSRLQKLSEEYNLA 258
Query: 185 LLEPN 189
++ N
Sbjct: 259 VVITN 263
>gi|452821241|gb|EME28274.1| DNA repair protein [Galdieria sulphuraria]
Length = 365
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 55/242 (22%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGT 39
++ ++ IS+T KL AGY ++ S+ + ++ G
Sbjct: 53 KLEQVGISSTDIKKLQDAGYHTIESVAYTTKKTLLDVKGISEAKAEKIINECAKLVNMGF 112
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
TA++ + QE ++ +TT +LDN+L GGI +TE+ G GKTQL L V Q
Sbjct: 113 TTAYEYHKTRQEIIS-LTTGSQELDNLLAGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 171
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVI------NYLD---------KFVSEHK----- 139
+P+E GG GKA+YI F E+ I N D + S+H+
Sbjct: 172 LPIENGGGEGKALYIDSEGTFRPERIVAISERYGLNSEDVLNNIAVARAYNSDHQLQLLT 231
Query: 140 ---------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187
++I+DS +R + +LA R + ++ L LA +F +A++
Sbjct: 232 QACALMAESRYALIIVDSATALYRTDYSGRGELAARQQHMARFLRALQKLADEFGVAVVI 291
Query: 188 PN 189
N
Sbjct: 292 TN 293
>gi|300122053|emb|CBK22627.2| unnamed protein product [Blastocystis hominis]
Length = 225
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 32/186 (17%)
Query: 33 SDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
S +S+ TA D+L Q + I+T +++DN+L GG C VTEI G GKTQL I
Sbjct: 23 SGLSKSFSTAADLLVHIQRTWRDISTGSSEIDNLLLGGFKCGTVTEISGRGSTGKTQLVI 82
Query: 93 QLAVNVQ---IP--------------------------VEFGGLGGKAIYIGKCLGFYTE 123
VQ P ++ + I++ K T+
Sbjct: 83 TACATVQRYNTPSHQFQCIVIDAENTYSAIRQQEVLTNLKNPNASLRNIFVWKPQSL-TD 141
Query: 124 QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183
++ L F+ +H V+ + IDSIA++FR F D+ R+ L+ L +A +
Sbjct: 142 LIELLKSLPIFLEQHPQVRFIAIDSIAYYFRQ-FTDMIERSSKLNEAISYLTKIANRMQC 200
Query: 184 ALLEPN 189
A+L PN
Sbjct: 201 AIL-PN 205
>gi|345006487|ref|YP_004809340.1| DNA repair and recombination protein radA [halophilic archaeon
DL31]
gi|344322113|gb|AEN06967.1| DNA repair and recombination protein radA [halophilic archaeon
DL31]
Length = 343
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ S SI AS ++S G T+ D++ E +E
Sbjct: 19 KLTENGFESYQSIAVASPGELSNTADVGESTSADVINAAREAADIGGFETGATVLERRER 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ D+D +LGGG+ + +TE+ G G GK+Q+ Q++VNVQ+ E GGL G I
Sbjct: 79 IGKLSWHVDDVDELLGGGMETQSITEVYGEFGSGKSQVTHQMSVNVQLSKENGGLDGGCI 138
Query: 113 YIGKCLGFYTEQ 124
+I F E+
Sbjct: 139 FIDTEDTFRPER 150
>gi|357588408|ref|NP_001239491.1| DNA repair protein RAD51 homolog 2 isoform 2 [Mus musculus]
gi|12854237|dbj|BAB29970.1| unnamed protein product [Mus musculus]
gi|148670700|gb|EDL02647.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 258
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLAL 185
SIA R F ++ R + L A L LA +FS+ +
Sbjct: 211 SIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPV 253
>gi|261199103|ref|XP_002625953.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
gi|239595105|gb|EEQ77686.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
Length = 337
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + RI+T D+IL GG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVRISTGSKQFDSILAGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GK YI F E+ SA+ N Y
Sbjct: 130 TQLSHTMSVVAQLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLAKEFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|326921096|ref|XP_003206800.1| PREDICTED: DNA repair protein XRCC3-like [Meleagris gallopavo]
Length = 347
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+++ C+ LD++L GGI +TE+ G GKTQ+G+QL + VQ P +GGL A+YI
Sbjct: 81 KLSLGCSVLDDLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYRYGGLESGAVYI 140
Query: 115 GKCLGF---------------------------------YTEQSAVINYLDKFVSEHKD- 140
F + E +A ++ +++
Sbjct: 141 CTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKIRFGNSIFVEHAADLDTFHNCITKRLSL 200
Query: 141 ------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
V++V+IDSIA FR F D L+ R L +L L+ +F ++ N T
Sbjct: 201 LLTRGTVRLVVIDSIAALFRCEFGASDSVLKARYLQTFGAQLHGLSTRFRTPIMCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 DA 262
>gi|195450597|ref|XP_002072552.1| GK13653 [Drosophila willistoni]
gi|194168637|gb|EDW83538.1| GK13653 [Drosophila willistoni]
Length = 269
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 54/173 (31%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
SL +IC SS D+ + RI+T LD L GGI ++ E+ G
Sbjct: 3 SLQNICKKSSFDL-------------HNKRCFRISTGNKSLDVHLKGGIPLGKLIELIGN 49
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI-------------------------GKC 117
PG GKTQ+ ++L +NVQ+P GGL G++++ GK
Sbjct: 50 PGTGKTQMCMKLCLNVQLPRTLGGLDGESLFFDTRRDFNPNRLKELADEFERRYSTAGKS 109
Query: 118 LGFYTEQS----------------AVINYLDKFVSEHKDVKVVIIDSIAFHFR 154
EQ A + +K+++ + ++K++IIDS++F R
Sbjct: 110 KAMNAEQMLRNVHYVQCTSPAHLIAQVRMTNKYLAANPNIKIIIIDSLSFALR 162
>gi|407847641|gb|EKG03284.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + R+TT LD +LGGGI +TE G GKTQ+ L V Q+P GG
Sbjct: 106 QQRGKVTRMTTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGG 165
Query: 108 GGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHK------------- 139
GK IY+ F E+ AV+N + + EH+
Sbjct: 166 NGKVIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAE 225
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + L+ LA++F++A+ N
Sbjct: 226 DQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITN 279
>gi|209944560|gb|ACI96511.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S S ++ ++ WD+ Q +L +I T LD GGGI + E+ G G GKT
Sbjct: 22 SVSHENLRIFDKSCWDI---SQSALNKILTGNKALDTHFGGGISLGHLVELIGNSGTGKT 78
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 79 QMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDR 114
>gi|239609785|gb|EEQ86772.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis ER-3]
Length = 337
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + RI+T D+IL GG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVRISTGSKQFDSILAGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GK YI F E+ SA+ N Y
Sbjct: 130 TQLSHTMSVVAQLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLAKEFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|149051555|gb|EDM03728.1| similar to RAD51-like 1 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 319
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LNLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLGAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TE+ G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATLPTRLGGLEGAVLYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCQELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
SIA R F ++ R + L A L L+ +FS+ ++ N TT
Sbjct: 211 SIASVVRKEFDPQLQGNIKERNKFLGKGASLLKYLSGEFSVPVILTNQITT 261
>gi|71663769|ref|XP_818873.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
Brener]
gi|70884148|gb|EAN97022.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + R+TT LD +LGGGI +TE G GKTQ+ L V Q+P GG
Sbjct: 106 QQRGKVTRMTTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGG 165
Query: 108 GGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHK------------- 139
GK IY+ F E+ AV+N + + EH+
Sbjct: 166 NGKVIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAE 225
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + L+ LA++F++A+ N
Sbjct: 226 DQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITN 279
>gi|148670703|gb|EDL02650.1| RAD51-like 1 (S. cerevisiae), isoform CRA_d [Mus musculus]
Length = 174
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEHK 139
+ I + F +E K
Sbjct: 151 RLVEIAESRFPQYFNTEEK 169
>gi|145349400|ref|XP_001419122.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579353|gb|ABO97415.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 343
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 32/181 (17%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T M+ ++++ ITT A +D +L GGI VTEI G GKTQL LAV Q+
Sbjct: 91 TTAKMIDQQRQDTIYITTGSAKVDELLQGGIESGSVTEIYGEFRTGKTQLMHTLAVTSQM 150
Query: 101 PVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD----- 140
P+E GG GK +YI F + SAV++ Y EH+
Sbjct: 151 PIEHGGGEGKCLYIDTEGTFRPQRLIQIAERFNMDPSAVLDNVAYAKAHNVEHQSELLLA 210
Query: 141 ---------VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188
++IIDS+ +R G +L+ R L +L LA +F +A++
Sbjct: 211 AAGMMAETRFSLMIIDSVTNLYRTEYEGRGELSARQMHLGKFLRQLARLADEFGVAVIVS 270
Query: 189 N 189
N
Sbjct: 271 N 271
>gi|71659624|ref|XP_821533.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
Brener]
gi|70886915|gb|EAN99682.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + R+TT LD +LGGGI +TE G GKTQ+ L V Q+P GG
Sbjct: 106 QQRGKVTRMTTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPTSMGGG 165
Query: 108 GGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHK------------- 139
GK IY+ F E+ AV+N + + EH+
Sbjct: 166 NGKVIYVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAE 225
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + L+ LA++F++A+ N
Sbjct: 226 DQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITN 279
>gi|222617117|gb|EEE53249.1| hypothetical protein OsJ_36165 [Oryza sativa Japonica Group]
Length = 292
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 22/195 (11%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDI--SRGTQTAW--------DMLQEEQESLARIT 57
I+A KL AG ++ S+ + D+ +G A + L ++ + ++T
Sbjct: 36 IAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEGGNQLHAQRLEIIQVT 95
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
T +LD IL GGI +TEI G GKTQL L V Q+P++ GG GKA+YI
Sbjct: 96 TGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAE 155
Query: 118 LGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++ ++ D+F ++I+DS +R F +L+ R L+ L
Sbjct: 156 GTFRPQR--LLQIADRFA-------IMIVDSATALYRTDFSGRGELSARQMHLAKFLRSL 206
Query: 175 MNLAKKFSLALLEPN 189
LA +F +A++ N
Sbjct: 207 QKLADEFGVAVVITN 221
>gi|242002736|ref|XP_002436011.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
gi|215499347|gb|EEC08841.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis]
Length = 341
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 34/179 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E++ + R++T +LD ++GGG+ +TE+ G GKTQL L V Q+P E G
Sbjct: 94 EKRRHVFRVSTGSKELDKLMGGGVESMAITEVFGEFRTGKTQLSHTLCVTCQLPGENGYS 153
Query: 108 GGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD------------ 140
GGKA++I F + +A++ Y F SEH+
Sbjct: 154 GGKAMFIDTENTFRPDRLRDIADRFNLDHAAMLENILYARAFTSEHQMEMLDQVAAKFHE 213
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
+++I+DSI FR F +LA R + L+ + KL +++++++A+ N T
Sbjct: 214 EAGVYRLLIVDSIMALFRVDFSGRGELADRQQKLAQMLSKLQKISEEYNVAVFITNQMT 272
>gi|363727814|ref|XP_425477.3| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Gallus
gallus]
Length = 342
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 71 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGPKGYTGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLSRLQKISEEYNVAVFVTNQMT 273
>gi|326911974|ref|XP_003202330.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Meleagris gallopavo]
Length = 342
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 71 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLSRLQKISEEYNVAVFVTNQMT 273
>gi|449265652|gb|EMC76815.1| Meiotic recombination protein DMC1/LIM15 like protein, partial
[Columba livia]
Length = 346
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 35/203 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 76 VDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEF 134
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 135 RTGKTQLSHTLCVTAQLPGSNGYTGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNV 194
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 195 LYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 254
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 255 MLSRLQKISEEYNVAVFVTNQMT 277
>gi|348502397|ref|XP_003438754.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Oreochromis niloticus]
gi|63852084|dbj|BAD98460.1| RecA homolog Dmc1 [Oreochromis niloticus]
Length = 342
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 35/203 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+ ++ G QTA++ ++ + +TT + D +LGGG+ +TE G
Sbjct: 72 VEKIKEAAGKMLNVGFQTAFE-YSARRKQVFHVTTGSQEFDKLLGGGVESMAITEAFGEF 130
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P E G GGK I+I F + AV++
Sbjct: 131 RTGKTQLSHTLCVTAQLPGEDGYSGGKVIFIDTENTFRPDRLRDIADRFNVDHDAVLDNV 190
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 191 LYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 250
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 MLSRLQKISEEYNVAVFITNQMT 273
>gi|395837908|ref|XP_003791870.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Otolemur garnettii]
Length = 310
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVINYLDKFVSEHKDVKV 143
GKTQ+ LAV Q+P++ GG GKA+YI F E+ AV L K + + +
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERLQKILIPCR-YAL 189
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 190 LIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 238
>gi|211904093|ref|NP_001129988.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Oryzias latipes]
gi|199652322|gb|ACH91672.1| DMC1 [Oryzias latipes]
Length = 342
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+ ++ G QTA++ +++ + I+T + D +LGGG+ +TE G
Sbjct: 72 VEKIKEAAGKVLNVGFQTAFE-YSSKRKQVFHISTGSQEFDKLLGGGVESMAITEAFGEF 130
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P E G GGK I+I F + AV++
Sbjct: 131 RTGKTQLSHTLCVTAQLPGENGYSGGKVIFIDTENTFRPDRLRDIADRFNVDHGAVLDNV 190
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 191 LYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 250
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 MLSRLQKISEEYNVAVFVTNQMT 273
>gi|61229406|gb|AAX40988.1| RAD51B [Arabidopsis thaliana]
Length = 338
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + S S S S Q+A +L++ E E L+ + T LD L GGI
Sbjct: 8 ELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDYTLCGGI 67
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G PGIGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 68 PFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYI 110
>gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex]
Length = 341
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA + Q+ E L ++TT +LD +LGGGI +TEI G GKTQL + L
Sbjct: 84 VPMGFSTATEYHQKRAE-LVQVTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCLTL 142
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK 139
AV Q+P++ GG GK +YI F E+ + + LD F ++H+
Sbjct: 143 AVTCQLPIDSGGAEGKCLYIDTEGTFRPERLLAVAERYGLSGSDVLDNVACARAFNTDHQ 202
Query: 140 D--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DS +R + +L+ R L+ L+ LA +F
Sbjct: 203 SQLLIQASAMMADSRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFG 262
Query: 183 LALLEPN 189
+A++ N
Sbjct: 263 VAVVITN 269
>gi|8307944|gb|AAF74403.1|AF198107_3 DNA repair protein RAD51 [Giardia intestinalis]
Length = 236
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
+ CAD + +LGGG+ +TE+ G GKTQL LAV Q+PV GG GGK +YI
Sbjct: 1 SGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTE 60
Query: 118 LGF----------------------------YTEQSAV--INYLDKFVSEHKDVKVVIID 147
F YT + + I L K + E++ +VI+D
Sbjct: 61 GTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQ-FSLVIVD 119
Query: 148 SIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
S+ FR F +LA R + L L LA +F+LA+ N
Sbjct: 120 SLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTN 164
>gi|84784026|gb|ABC61978.1| DMC1-like protein [Trichomonas vaginalis]
Length = 338
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 32/167 (19%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RIT+ +LD +LGGG+ +TE+ G GKTQL L V Q+P+ GG GK +I
Sbjct: 102 RITSGSTELDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQGGGQGKVCFI 161
Query: 115 GKCLGFYTEQSAVIN---------------YLDKFVSEHK--------------DVKVVI 145
F E+ VI Y F E + +++I
Sbjct: 162 DTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLLI 221
Query: 146 IDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
IDSI FR F +LA R + L + L LA +F++A+ N
Sbjct: 222 IDSITALFRVDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITN 268
>gi|159469155|ref|XP_001692733.1| DNA recombination protein [Chlamydomonas reinhardtii]
gi|45685351|gb|AAS75433.1| putative DNA repair protein RAD51 [Chlamydomonas reinhardtii]
gi|158277986|gb|EDP03752.1| DNA recombination protein [Chlamydomonas reinhardtii]
Length = 343
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQ----------EEQESLARITTSCADLDNILGGGIG 72
LS I S + I + A+ M+ E+++ + ITT C +LD IL GGI
Sbjct: 62 QLSEIKGLSEAKIDKMQLVAFKMVPMGFTTAAAVAEQRKEVISITTGCKELDTILEGGIE 121
Query: 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TEI G GKTQL L V Q+PVE GG GKA+YI
Sbjct: 122 TGSITEIYGEYRCGKTQLCHTLCVTCQLPVEMGGGEGKAMYI 163
>gi|374723842|gb|EHR75922.1| DNA repair and recombination protein RadA [uncultured marine group
II euryarchaeote]
Length = 345
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 29/142 (20%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L E + + ++++ +D++LGGG + + E+ G G GKTQ+G QLAVN +P+ G
Sbjct: 104 LLERRREVLKLSSKVQSIDDLLGGGFETQALVEVYGAFGSGKTQIGHQLAVNCTLPMSEG 163
Query: 106 GLGGKAIYIGKCLGFYTE---QSAVINYLDK------------FVSEHK----------- 139
G G YI F E Q A + LD + S H+
Sbjct: 164 GFDGDVFYIDTEDTFRPERITQMARGHGLDPDAVLERIHVARAYNSAHQMLLVDEIKRMS 223
Query: 140 ---DVKVVIIDSIAFHFRHGFV 158
+VK++I+DS+ HFR ++
Sbjct: 224 KGLNVKMIIVDSLTSHFRAEYI 245
>gi|50294774|ref|XP_449798.1| hypothetical protein [Candida glabrata CBS 138]
gi|49529112|emb|CAG62776.1| unnamed protein product [Candida glabrata]
Length = 466
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 39/184 (21%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ TT +D +LGGGI +TEI G GK+QL +QL ++VQ+P+ GGL K ++I
Sbjct: 85 QFTTGDLGIDEVLGGGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAKCVFI 144
Query: 115 G---------------------------------KCLGFYTEQSAVINYLDKFVSEHK-D 140
C +++ V L + +K +
Sbjct: 145 TTEGDLPTNRLAGMIEARKDWHELGISQSNIFTVSCPDLISQEHIVNVQLPVLLERNKGE 204
Query: 141 VKVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+K++IIDSI+ H R F D ++ +A KL +A K S+A++ N
Sbjct: 205 IKLIIIDSISHHLRVELDTKSFKDSLENKAYITEMAEKLQGIATKHSVAIVVANQVGDKP 264
Query: 196 LAES 199
L E+
Sbjct: 265 LNEN 268
>gi|298714477|emb|CBJ27499.1| Rad51 DNA recombinase 2 [Ectocarpus siliculosus]
Length = 335
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 50/231 (21%)
Query: 31 SSSDISRGTQTAWDMLQEEQESLAR--ITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
S+ + +TA D+L+E +E+ A + T LD+ L GG +TE+ G GIGKT
Sbjct: 58 STRIVPEQAKTAGDLLRERREAGASFFVATGIQPLDDALQGGFPTGMITELVGPAGIGKT 117
Query: 89 QLGIQLAVNVQIPVEFGGLGGKA--IYIG----------------KCLGFYTEQSAVINY 130
Q +Q+A +P + GGLG A +Y+ + G Y E S
Sbjct: 118 QTCLQVAAQACLPAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTEKGS 177
Query: 131 LDKFVSE------------------------HKDVKVVIIDSIAFHFRHGFV--DLALRT 164
+++ +++ +V+++++DSIA R F D R
Sbjct: 178 MERLLNQVTVFPVDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFAREDTLSRQ 237
Query: 165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAA 215
+L+ A L +LA FS +L N TT+ S L GSR+++A+
Sbjct: 238 ELLTRQAAVLKSLAYTFSAVVLVTNQVTTSFYPTSGL----QGGSRQSIAS 284
>gi|242389898|dbj|BAH80458.1| putative DMC1 protein [Lentinula edodes]
Length = 346
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+Q++ + + I+T +D ILGGGI + ++E+ G GKTQL ++V Q+P + G
Sbjct: 99 VQDKGKRVLVISTGSKSVDAILGGGIMSQSISEVYGEFRTGKTQLAHTMSVAAQLPPDLG 158
Query: 106 GLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH------------ 138
G GK YI F ++ I Y F SEH
Sbjct: 159 GASGKVAYIDTEGTFRPDRIKAIADRFGVDGNMALENILYARAFNSEHQMELINECSLRF 218
Query: 139 ---KDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
KD +++I+DSI FR G L+ R + L+ + KL L++++++ +L N
Sbjct: 219 AEDKDFRLLIVDSIMALFRVDYSGRGKLSERQQKLAQMLSKLTKLSEEYNICVLLTN 275
>gi|4322514|gb|AAD16073.1| recombination/repair protein RadA [Sulfolobus shibatae]
gi|4322528|gb|AAD16080.1| recombination/repair protein RadA [uncultured archaeon 'Norris
Geyer Basin #13']
Length = 133
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 33/132 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FY-- 121
TQL QL+VNVQ+P E GGL GKA+YI K LG +Y
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 60
Query: 122 ----TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q A+++ L + VS+ +K++++DS+ HFR G +LA+R + L+ +L
Sbjct: 61 AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 120
Query: 175 MNLAKKFSLALL 186
LA+ + +A++
Sbjct: 121 TRLAEVYDIAVI 132
>gi|405972678|gb|EKC37434.1| DNA repair protein XRCC3 [Crassostrea gigas]
Length = 309
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 41/227 (18%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCAD 62
V L ++ + + G TS I + SS DI R + + Q E L
Sbjct: 4 VEDLDVNPKIKTSMRKVGLTSYGQILTLSSQDIERLAKLS----QGEVTGLKTAIAQQVL 59
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI-------- 114
+L GGI + +TEI G GKTQ +QL + VQ+P E GGL A YI
Sbjct: 60 THPLLTGGILSQGITEISGESASGKTQFCLQLCLTVQLPPEEGGLAAGAAYICTEDAFPS 119
Query: 115 ---GKCLGFY---TEQSAVINYLDKFVSEH---------------------KDVKVVIID 147
+ + ++ +E+ I + D EH VK+VI+D
Sbjct: 120 KRLSQMISYFRQRSEKRKQIPFGDNIFIEHVADLDSLNSCIHQKLPHLLSSGSVKLVIVD 179
Query: 148 SIAFHFR--HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
S+A FR + D+ R++ ++ +A L ++ K+ L ++ N T
Sbjct: 180 SVAAVFRCDYELKDMYKRSKHMASLAASLHRISSKYCLPIVCVNQVT 226
>gi|209944596|gb|ACI96529.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 43/184 (23%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++ WD+ Q + +I T D GGGI + E+ G G GKTQ+ +QL +NVQ
Sbjct: 33 KSCWDI---SQSASNKILTGKKXXDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQ 89
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQ------------------------SAVINY----- 130
IP GGL G A++I F+ ++ I+Y
Sbjct: 90 IPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEFKAHKMLQKIHYVRCPK 149
Query: 131 LDKFVS----------EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK 180
LD+ ++ +H D+K+++IDS+AF R D A R +L + + L ++
Sbjct: 150 LDQLMATVLSCHRHLVDHPDIKLIVIDSLAFTLR-MLEDGAHRYEMLLELHESMRRLQRQ 208
Query: 181 FSLA 184
L
Sbjct: 209 HELT 212
>gi|365982437|ref|XP_003668052.1| hypothetical protein NDAI_0A06550 [Naumovozyma dairenensis CBS 421]
gi|343766818|emb|CCD22809.1| hypothetical protein NDAI_0A06550 [Naumovozyma dairenensis CBS 421]
Length = 485
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 45/207 (21%)
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG- 115
TT +D LGGGI +TEI G GK+QL +QL ++VQ+P GGL K +YI
Sbjct: 105 TTGDVTIDESLGGGIFLGNITEIFGESSTGKSQLLMQLCLSVQLPKSMGGLESKCVYITT 164
Query: 116 -------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDVK 142
K G ++ D EH +K
Sbjct: 165 EGDLPTTRLEGILDARPELKKHGVSQHNIFTVSCNDLITQEHILNVQLPVLLEQNESKIK 224
Query: 143 VVIIDSIAFHFRHGFVDLALRTR-----VLSGIALKLMNLAKKFSLALLEPNLATTANLA 197
++IIDSI+ H R +++ + +A +L+++A K SLA++ N + +A
Sbjct: 225 LIIIDSISHHMRVELQTNSIKASRNNRYYVEQMAERLLHIADKHSLAIVVANQVSDKPMA 284
Query: 198 ESCLTCLRDSGSRKAVAAAAAQLGFVL 224
E + + + + QLG+V+
Sbjct: 285 E------KQTRYHQTIMDYEYQLGWVV 305
>gi|389624165|ref|XP_003709736.1| hypothetical protein MGG_06985 [Magnaporthe oryzae 70-15]
gi|351649265|gb|EHA57124.1| hypothetical protein MGG_06985 [Magnaporthe oryzae 70-15]
gi|440467178|gb|ELQ36416.1| hypothetical protein OOU_Y34scaffold00663g16 [Magnaporthe oryzae
Y34]
gi|440480744|gb|ELQ61393.1| hypothetical protein OOW_P131scaffold01188g4 [Magnaporthe oryzae
P131]
Length = 548
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 43/173 (24%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T +LD LGGGI VTEI G G GKTQ + L + VQ+P GLG KA+YI
Sbjct: 137 ISTLDPELDAALGGGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPH-GLGRKAMYIP 195
Query: 116 -----------------------------------KCLGFYTEQSAVINYLDKFVSEHKD 140
+ LG Q ++++ + ++
Sbjct: 196 TEAALSTRRVAQMLAANPLLLSASPRPSLDSILSLQPLGDIEAQDHILSFQVPLEAARRN 255
Query: 141 VKVVIIDSIAFHFRHGF-------VDLALRTRVLSGIALKLMNLAKKFSLALL 186
V ++I+DS+A +FR + LA R+ L + ++L NLA+ +LA++
Sbjct: 256 VGLIILDSVAANFRAEYDAAGSRSTGLAARSAELVRLGMQLRNLARSLNLAVV 308
>gi|281351151|gb|EFB26735.1| hypothetical protein PANDA_002516 [Ailuropoda melanoleuca]
Length = 285
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 37 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 95
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + +AV++
Sbjct: 96 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 155
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 156 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 215
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 216 QMLSRLQKISEEYNVAVFVTNQMT 239
>gi|4322536|gb|AAD16084.1| recombination/repair protein RadA [uncultured archaeon 'Obsidian
Pool #1']
Length = 133
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 33/130 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FYT- 122
TQL QL+VNVQ+P E GGL GKA+YI K +G +Y
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLNGKAVYIDTEGTFRWERIEAMAKAVGLDPDTAMNNIYYMR 60
Query: 123 -----EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
Q A++ L + +++ +K+VI+DS+ HFR F +LA+R + L+ +L
Sbjct: 61 AINSDHQMAIVEDLQELITKEPAIKLVIVDSVTSHFRAEFPGRENLAVRQQKLNKHLHQL 120
Query: 175 MNLAKKFSLA 184
+ LA+ + +A
Sbjct: 121 VRLAEMYDIA 130
>gi|194740846|ref|XP_001952901.1| GF17509 [Drosophila ananassae]
gi|190625960|gb|EDV41484.1| GF17509 [Drosophila ananassae]
Length = 345
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 35/175 (20%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R+T C+ LD GGG+ R +TEI G +GKT L + L++ VQ+P E GGLG Y
Sbjct: 86 SRVTFGCSALDRCTGGGVVTRGITEIFGGYSVGKTHLLLHLSLGVQLPRELGGLGKGVAY 145
Query: 114 IGKCLGFYTEQ-------------SAVINYLDKFVSE-HKDVK----------------- 142
I F + + +N+L + E KD K
Sbjct: 146 ICTGSPFPARRLLHISKTWEQRYPNTKLNFLANVMVEVQKDAKSLMDCVNNRLSDLFQQH 205
Query: 143 ---VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+++IDS+A FR D R R L + L++ ++K++ A++ N A ++
Sbjct: 206 GIGLIVIDSVAAVFR-DCKDFNQRARDLRSLTNTLLSYSEKYNCAVVCVNEAVSS 259
>gi|325092525|gb|EGC45835.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus H88]
Length = 381
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+IL GG ++E+ G GKTQL ++V Q+P + G
Sbjct: 110 LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVMAQLPKDMG 169
Query: 106 GLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK----------- 139
G GK YI F E+ SA+ N Y SEH+
Sbjct: 170 GAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLNTLSKEF 229
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L
Sbjct: 230 VGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVL 282
>gi|240280982|gb|EER44485.1| meiotic recombination protein [Ajellomyces capsulatus H143]
Length = 381
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+IL GG ++E+ G GKTQL ++V Q+P + G
Sbjct: 110 LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVMAQLPKDMG 169
Query: 106 GLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK----------- 139
G GK YI F E+ SA+ N Y SEH+
Sbjct: 170 GAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLNTLSKEF 229
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L
Sbjct: 230 VGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVL 282
>gi|300175731|emb|CBK21274.2| unnamed protein product [Blastocystis hominis]
Length = 292
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T +M+Q Q + +ITT +DLD +LGGGI +TEI G GKTQL L V Q+
Sbjct: 39 TGREMMQLRQRVI-KITTGSSDLDTLLGGGIETMSITEIFGEFRTGKTQLAHTLCVTAQL 97
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLD------------------- 132
P E G GK I++ F ++ I LD
Sbjct: 98 PSEMHGANGKVIFLDTEGTFRPQRVVEIAGRYGLNGDEVLDNILLARAYTHEQQMDVITA 157
Query: 133 ---KFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
K V ++ ++++DSI FR G +LA R + L L LA++F++A++
Sbjct: 158 AAAKIVEDNSPYHLLVVDSITALFRVDYSGRGELAERQQKLGRHLSALKKLAEEFNVAVV 217
Query: 187 EPNLAT 192
N T
Sbjct: 218 IINQVT 223
>gi|255552035|ref|XP_002517062.1| meiotic recombination protein dmc1, putative [Ricinus communis]
gi|223543697|gb|EEF45225.1| meiotic recombination protein dmc1, putative [Ricinus communis]
Length = 353
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L ++ + RITT LD +LGGGI +TE G
Sbjct: 76 KVDKICEAAEKIVNFGYITGSDALLRRKQ-VVRITTGSQALDELLGGGIETLCITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V+ Q+P G GK YI F ++ AV++
Sbjct: 135 FRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 255 LSRLTKIAEEFNVAVYMTN 273
>gi|407408409|gb|EKF31859.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi
marinkellei]
Length = 351
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 32/169 (18%)
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ R+TT LD +LGGGI +TE G GKTQ+ L V Q+P GG GK I
Sbjct: 111 VTRMTTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTSQLPTSMGGGNGKVI 170
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEHK--------------DVKV 143
Y+ F E+ AV+N + + EH+ +
Sbjct: 171 YVDTESTFRPERIKPIAARFGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++DSI FR F +LA R + L+ + L+ LA++F++A+ N
Sbjct: 231 LVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIKLAEEFNVAVYITN 279
>gi|291389878|ref|XP_002711438.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Oryctolagus
cuniculus]
Length = 340
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGASGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|365983360|ref|XP_003668513.1| hypothetical protein NDAI_0B02350 [Naumovozyma dairenensis CBS 421]
gi|343767280|emb|CCD23270.1| hypothetical protein NDAI_0B02350 [Naumovozyma dairenensis CBS 421]
Length = 361
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LD+ILGGGI +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 123 LSTGSKQLDSILGGGIMSMSITEVFGEFRCGKTQMSHTLCVTSQLPREMGGAEGKVAYID 182
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ + ++VI+
Sbjct: 183 TEGTFRPERIKQIAQNYDLDPDSCLENVSYARALNSEHQMELVEQLGEALSSGEYRLVIM 242
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ +L +A++F++A+ N
Sbjct: 243 DSIMANFRVDYTGRGELNERQQKLNQHLFRLNRMAEEFNVAVFMTN 288
>gi|225562590|gb|EEH10869.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus G186AR]
Length = 381
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+IL GG ++E+ G GKTQL ++V Q+P + G
Sbjct: 110 LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVMAQLPKDMG 169
Query: 106 GLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK----------- 139
G GK YI F E+ SA+ N Y SEH+
Sbjct: 170 GAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLNTLSKEF 229
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L
Sbjct: 230 VGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVL 282
>gi|410916047|ref|XP_003971498.1| PREDICTED: DNA repair protein XRCC3-like [Takifugu rubripes]
Length = 271
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R+ C ++ +L GG+ +TE+ G G GKTQL +QL + VQ P ++GGL A+YI
Sbjct: 81 RLGVGCVVINELLRGGLPVGRITELSGQSGAGKTQLALQLCLCVQYPTDYGGLDSGAVYI 140
Query: 115 GKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFHFRHGFVD 159
TE S I L + V++ DV +I ++ F H +V+
Sbjct: 141 C------TENSFPIRRLQQLVTDQYVMRSDVPPSLISTLKFS-DHVYVE 182
>gi|10944306|dbj|BAB16892.1| DMC1 [Cynops pyrrhogaster]
Length = 342
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A + I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 71 KVDKIKEAVNKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITETFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGTDGYTGGKVIFIDTENTFRPDRLRDIADRFSVDHDAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K+++IDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLVIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLARLQKISEEYNVAVFVTNQMT 273
>gi|209879790|ref|XP_002141335.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
muris RN66]
gi|209556941|gb|EEA06986.1| meiotic recombination protein DMC1-like protein, putative
[Cryptosporidium muris RN66]
Length = 342
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 33/182 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
QT ++L + Q L RITT D +L GG +TEI G GKTQ+ L V Q
Sbjct: 90 QTGTEVLAKRQNIL-RITTGSEQFDKMLLGGFESMCITEIFGENRCGKTQICHTLCVTAQ 148
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH------ 138
+P E G GK +I F E+ A I+ Y + EH
Sbjct: 149 LPTEMSGANGKVCFIDTEGTFRPERIAKISERFGLQGDVTLDNILYARAYTHEHLNQLIS 208
Query: 139 --------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187
+ ++I+DSI FR F +LA R ++L+ KL LA +F++A++
Sbjct: 209 AAAGKMIEERFALLIVDSIIALFRTEFSGRGELAERQQILNKTLSKLNKLADQFNIAVVM 268
Query: 188 PN 189
N
Sbjct: 269 TN 270
>gi|304367643|gb|ADM26629.1| DNA repair protein rad51 [Polypedilum vanderplanki]
Length = 347
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 56/247 (22%)
Query: 15 KLISAGYTSLSSI------CSASSSDISR----------------GTQTAWDMLQEEQES 52
KL AGY ++ SI C A+ IS G +A +L++ E
Sbjct: 45 KLKEAGYHTVESIAYTLKKCLATVKGISEQKAEKLIDEAGKMIGLGITSASLILKQRAEQ 104
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
++ ITT +LD +LGGGI +TE+ G GKTQL LAV Q+P GG GK +
Sbjct: 105 IS-ITTGSRELDKLLGGGIETGSITEVFGEFRSGKTQLAHTLAVTCQLPANSGGGQGKCL 163
Query: 113 YIGKCLGFYTEQSAVI---------NYLDK------FVSEHK------------DVK--V 143
YI F E+ + I LD + ++H+ D + +
Sbjct: 164 YIDTEGTFRPERLSSIAERFKMDPNEVLDNIAVARAYNTDHQLTLLVHASAIMADTRFAL 223
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC 200
+++DS +R + +LA R L+ L+ +A +F +A+L N AN+A S
Sbjct: 224 LVVDSATALYRTDYSGRGELAARQMHLAKFMRHLLRMADEFGIAVLITN-QVVANVANSS 282
Query: 201 LTCLRDS 207
DS
Sbjct: 283 HVWREDS 289
>gi|301757528|ref|XP_002914594.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Ailuropoda melanoleuca]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + +AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|225680556|gb|EEH18840.1| DNA repair and recombination protein radA [Paracoccidioides
brasiliensis Pb03]
Length = 337
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D+IL GG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GK YI F E+ SA+ N Y
Sbjct: 130 TQLSHTMSVVAQLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLSKEFAGSEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 250 HMAEEFNVCVLMTN 263
>gi|300797730|ref|NP_001178267.1| meiotic recombination protein DMC1/LIM15 homolog [Bos taurus]
gi|426225780|ref|XP_004007040.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Ovis
aries]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + +AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|395516514|ref|XP_003762432.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
3-like [Sarcophilus harrisii]
Length = 267
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVV 144
+GKTQL Q+A +VQIP F G+ + I++ F + V F+ E+ V+++
Sbjct: 106 VGKTQLCKQMAGDVQIPECFEGVTLEXIFLDTEGSFMVATAFV-----HFILEYXKVQLI 160
Query: 145 IIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
I D AF F+H F + +L+T +L+G+A +L+++A LA++ N TT
Sbjct: 161 IQDRTAFPFQHSFENFSLQT-LLNGLAXQLISMANNHKLAVIWTNQMTT 208
>gi|440903014|gb|ELR53728.1| Meiotic recombination protein DMC1/LIM15-like protein, partial [Bos
grunniens mutus]
Length = 345
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 74 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 132
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + +AV++
Sbjct: 133 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 192
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 193 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 252
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 253 QMLSRLQKISEEYNVAVFVTNQMT 276
>gi|402884236|ref|XP_003905593.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Papio
anubis]
Length = 279
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|1321636|dbj|BAA10970.1| DMC1 homologue [Homo sapiens]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|391345455|ref|XP_003747001.1| PREDICTED: DNA repair protein RAD51 homolog B-like [Metaseiulus
occidentalis]
Length = 343
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 19/110 (17%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCR 74
KL+ G+TS + I S I ITT A+LD +LGGGI
Sbjct: 84 KLVPMGFTSATEIHKQRSEIIY-------------------ITTGSAELDKLLGGGIETG 124
Query: 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
VTE+ G GKTQL QLAV Q+P++ G GKA+YI F E+
Sbjct: 125 SVTELFGEFRTGKTQLCHQLAVTCQLPIDNNGAEGKALYIDTEGEFRPER 174
>gi|49259489|pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
gi|49259490|pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 72 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 130
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 190
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 191 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 QMLSRLQKISEEYNVAVFVTNQMT 274
>gi|114686387|ref|XP_515130.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Pan
troglodytes]
gi|410348666|gb|JAA40937.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
gi|410348668|gb|JAA40938.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
gi|410348670|gb|JAA40939.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|23238219|ref|NP_008999.2| meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens]
gi|109094191|ref|XP_001094012.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Macaca
mulatta]
gi|397501959|ref|XP_003821641.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Pan
paniscus]
gi|13878923|sp|Q14565.2|DMC1_HUMAN RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
gi|40786809|gb|AAR89915.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|47678503|emb|CAG30372.1| DMC1 [Homo sapiens]
gi|109451232|emb|CAK54477.1| DMC1 [synthetic construct]
gi|109451810|emb|CAK54776.1| DMC1 [synthetic construct]
gi|115528933|gb|AAI25164.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|115529065|gb|AAI25165.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|119580653|gb|EAW60249.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|158258671|dbj|BAF85306.1| unnamed protein product [Homo sapiens]
gi|306921535|dbj|BAJ17847.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [synthetic construct]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|354505335|ref|XP_003514726.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Cricetulus griseus]
Length = 340
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANELIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|4322522|gb|AAD16077.1| recombination/repair protein RadA [uncultured archaeon 'Norris
Geyer Basin #6']
Length = 133
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 33/132 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FY-- 121
TQL QL+VNVQ+P E GGL GKA+YI K LG +Y
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 60
Query: 122 ----TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q A+++ L + VS+ +K++++DS+ HFR G +LA+R + L+ +L
Sbjct: 61 AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 120
Query: 175 MNLAKKFSLALL 186
LA+ + +A++
Sbjct: 121 TRLAEFYDIAVI 132
>gi|348569516|ref|XP_003470544.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Cavia
porcellus]
Length = 340
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|344296228|ref|XP_003419811.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Loxodonta africana]
Length = 340
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYQGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|4322530|gb|AAD16081.1| recombination/repair protein RadA [uncultured archaeon 'Norris
Geyer Basin #14']
Length = 133
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 33/130 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FYT- 122
TQL QL+VNVQ+P E GGL GKA+YI K +G +Y
Sbjct: 1 TQLCHQLSVNVQLPPEKGGLNGKAVYIDTEGTFRWERIEAMAKAVGLDPDTAMNNIYYMR 60
Query: 123 -----EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q A++ L + +++ +K+VI+DS+ HFR G +LA+R + L+ +L
Sbjct: 61 AINSDHQMAIVEDLQELITKEPAIKLVIVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 120
Query: 175 MNLAKKFSLA 184
+ LA+ + +A
Sbjct: 121 VRLAEMYDIA 130
>gi|452822335|gb|EME29355.1| DNA-repair protein XRCC3 [Galdieria sulphuraria]
Length = 334
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 50/219 (22%)
Query: 24 LSSICSASSSDISRGTQTAWDML------------QEEQESLARITTSCADLDNILGGGI 71
L ++ A DI R T W +L + R++ C LD+ L GG+
Sbjct: 37 LQTVFHAQKDDIFRLTPVFWQLLITCIYGSVLLPIHIDTSCQTRLSLGCPKLDDFLHGGL 96
Query: 72 --GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------- 120
G ++ E G G+GKTQL +QL++ Q+ GGL + IYI F
Sbjct: 97 IAGQGQIFEFCGEAGVGKTQLMLQLSIVSQLKTRDGGLDSRVIYICTSGRFPSSRLQQLI 156
Query: 121 --------YTEQSAV--------INYLDK----------FVSEHKDVKVVIIDSIAFHFR 154
Y E ++V + L++ ++ + D KV+IIDS+A FR
Sbjct: 157 AAFVQRYPYLEANSVASNIIVETVKSLEQLEVLVDSRLVYLLNNTDAKVIIIDSLARLFR 216
Query: 155 HGFVD-LALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
+D L R+ VL + ++L ++ K LL N T
Sbjct: 217 ETGLDALQHRSLVLHRLGIQLKRISYKHETLLLVTNEMT 255
>gi|169806553|ref|XP_001828021.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
H348]
gi|161779161|gb|EDQ31186.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
H348]
Length = 337
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 55/242 (22%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGT 39
E+ + ISA+ KL +GY ++ S+ A + + G
Sbjct: 24 ELKSVGISASDVSKLSESGYNTVQSLVFAPRKELLLIKGFSDAKVDKLIKEAAKLVPMGF 83
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
TA + + +E + ITT +LD +L GGI +TE+ G GK+QL +AV Q
Sbjct: 84 TTATEYHSKRKE-VVYITTGSTELDKLLNGGIESGTITEVFGEFRTGKSQLCHTVAVTCQ 142
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQ------------SAV---INYLDKFVSEHKD---- 140
+P E GG GK +YI F TE+ + V I+Y F S+H++
Sbjct: 143 LPKENGGGNGKCMYIDTEGTFRTERLIPIAERLGLDPNEVLDNISYARAFNSDHQNNLLI 202
Query: 141 ----------VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
V+I+DS +R +G +L+ R L+ L NLA+ + +A++
Sbjct: 203 HASAMMSETKYAVLIVDSATSLYRTDYNGRGELSARQISLARFLRSLTNLAETYGIAVII 262
Query: 188 PN 189
N
Sbjct: 263 TN 264
>gi|449280658|gb|EMC87894.1| DNA repair protein XRCC3 [Columba livia]
Length = 347
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 45/193 (23%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
D L +Q+ +++ C+ LD +L GGI +TE+ G GKTQ+G+QL + VQ P +
Sbjct: 73 DHLTSQQQ---KLSLGCSVLDALLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPYK 129
Query: 104 FGGLGGKAIYI-------GKCL--------------------------GFYTEQSAVINY 130
+GGL A+YI K L G + E +A +
Sbjct: 130 YGGLESGAVYICTEDVFPSKRLQQLIDQQHKLRADVPAEIIQKIKFGNGIFVEHAADLET 189
Query: 131 LDKFVSEHKD-------VKVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLMNLAKKF 181
++ V++V+IDSIA FR F D + R L +L +L+ +F
Sbjct: 190 FHNCITNRISLLLARGMVRLVVIDSIAALFRCEFGASDSVTKARYLQTFGAQLHSLSMRF 249
Query: 182 SLALLEPNLATTA 194
++ N T A
Sbjct: 250 RTPIMCINQVTDA 262
>gi|154279522|ref|XP_001540574.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
gi|150412517|gb|EDN07904.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1]
Length = 358
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 37/191 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D+IL GG ++E+ G GK
Sbjct: 75 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGK 129
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GK YI F E+ SA+ N Y
Sbjct: 130 TQLSHTMSVMAQLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 189
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 190 ALNSEHQLELLNTLSKEFVGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 249
Query: 176 NLAKKFSLALL 186
++A++F++ +L
Sbjct: 250 HMAEEFNVCVL 260
>gi|149743044|ref|XP_001501634.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Equus
caballus]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|412994184|emb|CCO14695.1| DNA repair protein RAD51 homolog 1 [Bathycoccus prasinos]
Length = 353
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 23/154 (14%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR---------------GTQTAWDML 46
E+S I+A KL +AG ++ + AS +++ +T D
Sbjct: 40 ELSNHGINANDIEKLKTAGVCTMEGLSGASKKWLTQIKGLSEQKVEKLKAISKKTCNDTF 99
Query: 47 QE------EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
Q ++E+L +ITT LD++L GGI +TE+ G GKTQL LAV+ QI
Sbjct: 100 QSATALATKRENLVKITTGSQPLDDMLMGGIESGSMTELYGEFRTGKTQLMHTLAVSGQI 159
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKF 134
PVE GG GGK +YI F E+ ++ ++F
Sbjct: 160 PVENGGGGGKVMYIDTEGTFRPER--IVQIAERF 191
>gi|410965553|ref|XP_003989311.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Felis
catus]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|351699284|gb|EHB02203.1| Meiotic recombination protein DMC1/LIM15-like protein
[Heterocephalus glaber]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|126339552|ref|XP_001367929.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Monodelphis domestica]
Length = 342
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + +TT + D +LGGGI +TE G
Sbjct: 71 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHVTTGSQEFDKLLGGGIESMAITEAFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + +AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGTGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDYVAAKFHEEAGVFKLLIIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLSRLQKISEEYNVAVFVTNQMT 273
>gi|308806876|ref|XP_003080749.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
gi|116059210|emb|CAL54917.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
Length = 420
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 34/191 (17%)
Query: 32 SSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
++++ G T M++ ++ + ITT CA +D +L GGI VTEI G GKTQL
Sbjct: 159 ANNLVPGGFTTATMIEAARKDVIMITTGCAKVDEMLQGGIESGSVTEIYGEFRTGKTQLM 218
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV----------------INYLDKFV 135
LAV Q+P+E GG GK +YI G + Q + + Y
Sbjct: 219 HTLAVTCQLPIEQGGGEGKCLYI-DTEGTFRPQRLIQIAERFQMDPGPVLDNVAYAKAHN 277
Query: 136 SEHK--------------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLA 178
+EH+ ++IIDS+ +R G +L+ R L +L LA
Sbjct: 278 TEHQTELLVAAAGMMAETRFALMIIDSVTNLYRTEYEGRGELSARQMHLGKFLRQLARLA 337
Query: 179 KKFSLALLEPN 189
+F +A++ N
Sbjct: 338 DEFGVAVIVSN 348
>gi|71745272|ref|XP_827266.1| DNA recombination/repair protein RAD51/Dmc1 [Trypanosoma brucei]
gi|70831431|gb|EAN76936.1| RAD51/dmc1 protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261331479|emb|CBH14473.1| RAD51/dmc1 protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 349
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + R+TT LD +LGGGI +TE G GKTQ+ L V Q+P+ GG
Sbjct: 104 QQRGRVTRVTTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPISMGGG 163
Query: 108 GGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEHK------------- 139
GKAIY+ F E+ AV+ + + EH+
Sbjct: 164 NGKAIYVDTEATFRPERIKPIAERFGLDVEAVLGNILVARAYTHEHQMHLLSMVAAKMVE 223
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DS+ FR F +LA R + L+ + ++ LA+++++A+ N
Sbjct: 224 DQFSLLVVDSVTALFRVDFSGRGELAERQQKLAKMLSNMIKLAEEYNVAVYITN 277
>gi|390361377|ref|XP_003729914.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Strongylocentrotus purpuratus]
Length = 341
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+S G TA + ++ ++ RITT +LD +LGGGI +TE G
Sbjct: 71 MEKIKEAASKWEDHGFTTALE-YSVKRRNVFRITTGSTELDKLLGGGIESMAITEAFGEF 129
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P G GGK I+I F + A+++
Sbjct: 130 RTGKTQLSHTLCVCTQLPGSNGYPGGKVIFIDTENTFRPDRLRDIADRFNLDHGAMLDNV 189
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 LYARAYTSEHQFELLDYAAGKFHEEPGVFKLLIIDSIMALFRVDFTGRGELADRQQKLAQ 249
Query: 170 IALKLMNLAKKFSLALLEPNLATT 193
+ KL +++++++A+ N T+
Sbjct: 250 MLSKLQKISEEYNVAVFVTNQMTS 273
>gi|340056261|emb|CCC50591.1| putative RAD51/dmc1 protein [Trypanosoma vivax Y486]
Length = 352
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
++ + R+TT A LD +LGGG+ +TE G GKTQ+ L V Q+P+ GG
Sbjct: 107 HQRTKITRMTTGSAALDQLLGGGVESMSITEAFGEFRTGKTQIAHTLCVTCQLPLSMGGG 166
Query: 108 GGKAIYIGKCLGFYTEQSAVINY---LD------------KFVSEHK------------- 139
GKA+Y+ F E+ I LD + EH+
Sbjct: 167 NGKAVYVDTESTFRPERIKPIAERFGLDVDAVLANIIVARAYTHEHQMHLLSMVAAKMAE 226
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DSI FR F +LA R + L+ + L+ LA+++++A+ N
Sbjct: 227 EQFSLLVVDSITALFRVDFSGRGELAERQQKLAKMLSSLIKLAEEYNVAVYITN 280
>gi|226292806|gb|EEH48226.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
Pb18]
Length = 632
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + +I+T D+IL GG ++E+ G GK
Sbjct: 43 CQPSAS----GFITAME-LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGK 97
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P + GG GK YI F E+ SA+ N Y
Sbjct: 98 TQLSHTMSVVAQLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYAR 157
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 158 ALNSEHQLELLNTLSKEFAGSEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 217
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 218 HMAEEFNVCVLMTN 231
>gi|196049702|pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
gi|196049703|pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 72 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 130
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 190
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 191 VLYARAYTSEHQVELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 QMLSRLQKISEEYNVAVFVTNQMT 274
>gi|73969089|ref|XP_849984.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
1 [Canis lupus familiaris]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|311255074|ref|XP_003126070.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
1 [Sus scrofa]
Length = 340
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|149051556|gb|EDM03729.1| similar to RAD51-like 1 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 258
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LNLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLGAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TE+ G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATLPTRLGGLEGAVLYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEHK 139
+ I + F +E K
Sbjct: 151 RLVEIAESRFPQYFNTEEK 169
>gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior]
Length = 340
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD--ISRG-TQTAWDMLQEE--------------- 49
I+A KL AGY ++ ++ A+ D + +G ++ D LQ E
Sbjct: 33 ITAGDIKKLQDAGYYTVEAVAYATKKDLLVIKGISEAKADKLQLEASKMVMMGFKSATEV 92
Query: 50 ---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+ ++ ITT +LD +LGGGI +TEI G GK+QL LAVN Q+P+ GG
Sbjct: 93 HQTRANIVYITTGSKELDKLLGGGIETGSITEIFGEFRSGKSQLCHTLAVNCQLPISMGG 152
Query: 107 LGGKAIYIGKCLGFYTEQ 124
GK +YI F E+
Sbjct: 153 AEGKCLYIDTENTFRPER 170
>gi|395538165|ref|XP_003771055.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Sarcophilus harrisii]
Length = 342
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + +TT + D +LGGGI +TE G
Sbjct: 71 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHVTTGSQEFDKLLGGGIESMAITEAFGE 129
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V Q+P G GGK I+I F ++ AV++
Sbjct: 130 FRTGKTQLSHTLCVTAQLPGTGGYTGGKVIFIDTENTFRPDRLRDIADRYNVDHDAVLDN 189
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 190 VLYARAYTSEHQMELLDYVAAKFHEEGGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 249
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 250 QMLSRLQKISEEYNVAVFVTNQMT 273
>gi|159484887|ref|XP_001700483.1| Rad51-like protein [Chlamydomonas reinhardtii]
gi|158272235|gb|EDO98038.1| Rad51-like protein [Chlamydomonas reinhardtii]
Length = 343
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G +TA + Q + + RI T LD +LGGG + +TE+ G GKT L L V
Sbjct: 87 GWRTATEAAQAREREIIRIKTGSTALDELLGGGFETKSLTEMFGEWRCGKTMLAHTLCVT 146
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAV 127
Q+P E GG GKA +I F E Q+ +
Sbjct: 147 TQLPQEEGGGSGKAAFIDTEGTFRPELVKQIAERFGLDPDAVLGNIVVARAHTSEHQADL 206
Query: 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
+ L ++E +++++DS+ FR + +LA R + L+ + KL ++++F+
Sbjct: 207 LISLTALMAEEACFRLLVVDSLTAPFRTDYTGRGELAERQQKLNNVLAKLKKISEEFN 264
>gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus
marisnigri JR1]
gi|166218763|sp|A3CWU4.1|RADA_METMJ RecName: Full=DNA repair and recombination protein RadA
gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus
marisnigri JR1]
Length = 324
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 25/148 (16%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+++ LP + AT KL AGY ++ S+ +A++SD++
Sbjct: 4 IDLEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAEIGEATAKKVILAARKMADI 63
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+L ++++ + ++ T + D ++GGG+ + +TE+ G G GK+QL Q+AV
Sbjct: 64 GGFKTGRDIL-DKRKDIKKLRTLVPEFDELVGGGLETQAITEVYGEFGSGKSQLVHQMAV 122
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
N Q+P E GGLGG IY+ F E+
Sbjct: 123 NAQLPEELGGLGGGVIYVDTENTFRPER 150
>gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator]
Length = 340
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ ITT +LDN+LGGGI +TE+ G GK+QL LAVN Q+P+ GG G+
Sbjct: 98 NIVYITTGSKELDNLLGGGIETGSITELFGEFRSGKSQLCHTLAVNCQLPISMGGAEGRC 157
Query: 112 IYIGKCLGFYTEQ 124
+YI GF E+
Sbjct: 158 LYIDTENGFRPER 170
>gi|255075467|ref|XP_002501408.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
gi|226516672|gb|ACO62666.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299]
Length = 344
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 54/213 (25%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSC 60
M+V KL ++AT K++ G+T+ S M+Q ++ +TT
Sbjct: 73 MKVEKLKMAAT---KVVPLGFTTAS-------------------MVQAVRQDTIMVTTGA 110
Query: 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF 120
+ LD +LGGG +TEI G GKTQL LAV Q+P++ GG GKA+YI F
Sbjct: 111 SKLDELLGGGFESGSLTEIYGEFRTGKTQLCHTLAVTCQLPLDQGGAEGKAMYIDTEGTF 170
Query: 121 YTEQ------------SAVIN---YLDKFVSEHKD--------------VKVVIIDSIAF 151
++ +AV++ Y +EH+ V+I+DS+
Sbjct: 171 RPQRLIAIAERFGMDPNAVLDNVAYAKAHNTEHQSELLVAAAGMMAEARFGVIIVDSVTN 230
Query: 152 HFR---HGFVDLALRTRVLSGIALKLMNLAKKF 181
FR G +L+ R L L LA +F
Sbjct: 231 LFRTEYEGRGELSARQMHLGKFLRHLTRLADEF 263
>gi|157875215|ref|XP_001686010.1| putative recombinase rad51 [Leishmania major strain Friedlin]
gi|68129083|emb|CAJ06683.1| putative recombinase rad51 [Leishmania major strain Friedlin]
Length = 687
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 38 GTQTAWDMLQEEQESLAR-----ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
G +T +M E Q A+ +TT +LD +LGGG+ VTEI G PG+GKTQL +
Sbjct: 199 GCRTVREMHAEFQARQAQGFSTHVTTFSGELDGVLGGGVPVGGVTEISGPPGVGKTQLLM 258
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVS 136
QLAV+ +PVEFGG+G G CL TE S V L++ +
Sbjct: 259 QLAVSCAMPVEFGGMG------GACLFVDTEGSFVAERLEQMAT 296
>gi|401428044|ref|XP_003878505.1| putative recombinase rad51 [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322494753|emb|CBZ30056.1| putative recombinase rad51 [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 683
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLAR-----ITTSCADLDNILGGGIGCREVTEIGGVP 83
S S S G +T +M E Q A+ +TT +LD +LGGG+ VTEI G P
Sbjct: 190 SDSRSGAIPGCRTVREMHAEFQACQAQGFPTHVTTFSRELDGVLGGGVPVGGVTEISGPP 249
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
G+GKTQL +QLAV+ +PVEFGG+GG +Y+ F E+
Sbjct: 250 GVGKTQLLMQLAVSCAMPVEFGGMGGACLYVDTEGSFVAER 290
>gi|295661572|ref|XP_002791341.1| meiotic recombination protein DMC1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280903|gb|EEH36469.1| meiotic recombination protein DMC1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 541
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +I+T D+IL GG ++E+ G GKTQL ++V Q+P + G
Sbjct: 14 LGHQRKRVVKISTGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMG 73
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 74 GAEGKVAYIDTEGTFRPERIAQIAERFGVDSDSALENITYARALNSEHQLELLNTLSKEF 133
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++IIDSI FR + +LA R + L+ +KL ++A++F++ +L N
Sbjct: 134 AGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTN 189
>gi|125536708|gb|EAY83196.1| hypothetical protein OsI_38408 [Oryza sativa Indica Group]
Length = 294
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDI--SRGTQTAW----------DMLQEEQESLAR 55
I+A KL AG ++ S+ + D+ +G A L ++ + +
Sbjct: 36 IAALDVKKLKDAGLCTVESVVYSPRKDLLQIKGISEAKVDKIIEAGNASQLHAQRLEIIQ 95
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
+TT +LD IL GGI +TEI G GKTQL L V Q+P++ GG GKA+YI
Sbjct: 96 VTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYID 155
Query: 116 KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
F ++ ++ D+F ++I+DS +R F +L+ R L+
Sbjct: 156 AEGTFRPQR--LLQIADRFA-------IMIVDSATALYRTDFSGRGELSARQMHLAKFLR 206
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 207 SLQKLADEFGVAVVITN 223
>gi|242824534|ref|XP_002488278.1| meiotic recombination protein (Dmc1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218713199|gb|EED12624.1| meiotic recombination protein (Dmc1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 337
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA ++ + ++ +I+T D ILGGG ++E+ G GKTQL ++V Q+
Sbjct: 84 TAMELCHQRKKVF-KISTGSKQFDAILGGGFSSMSISEVYGEFRCGKTQLSHTMSVIAQL 142
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------ 139
P E GG GK Y+ F E+ A I+Y SEH+
Sbjct: 143 PKEMGGGEGKVAYMDTEGTFRPERIAQIAERYGLDAESTQENISYARALNSEHQLELLNT 202
Query: 140 --------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188
++++IDSI FR F +LA R + L+ ++L +LA++F++ +L
Sbjct: 203 LSKEFAGGQYRLLVIDSIMNCFRVDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMT 262
Query: 189 N 189
N
Sbjct: 263 N 263
>gi|308809359|ref|XP_003081989.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
tauri]
gi|116060456|emb|CAL55792.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
tauri]
Length = 371
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 57/245 (23%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDI-----------SRGTQTAWDMLQEEQ 50
E+ + ISAT KL +AG++++ + +I + ++A ML E +
Sbjct: 56 ELQQAGISATDVNKLKAAGFSTIRQLVMFPRKNIVAVKGFSDAKADKVLESALKMLPESE 115
Query: 51 --------------ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
+ + IT A +D IL GG R +TEI G GKTQ+ LAV
Sbjct: 116 SGGFITAAEDCERRKGVLHITCGAAAVDAILNGGFETRAITEIFGEWRCGKTQICHTLAV 175
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------SAVINYLDKFVS 136
Q+P+E GG K +I F +++ A ++ +D+ +
Sbjct: 176 TTQMPIEMGGGCSKVAWIDTENTFRSDRLEAIADRFGLDRDAVLSNVMVARVDTVDQMMQ 235
Query: 137 ---------EHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
+ K++I+DSI FR +V +L+ R + L+ +L LA++F++A
Sbjct: 236 ALIAIGAKMAEEPFKLLIVDSIMAIFRVDYVARGELSERQQTLNQFLSRLRKLAEEFNVA 295
Query: 185 LLEPN 189
++ N
Sbjct: 296 VVLTN 300
>gi|21312694|ref|NP_083151.1| DNA repair protein XRCC3 [Mus musculus]
gi|20140780|sp|Q9CXE6.1|XRCC3_MOUSE RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|12852383|dbj|BAB29391.1| unnamed protein product [Mus musculus]
Length = 349
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 37 RGTQ--TAWDMLQEEQ---ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
RG++ +A + Q+++ E R++ C LD LGGG+ +T + G GKTQL
Sbjct: 58 RGSRVLSALHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLA 117
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHK----DVKVVIID 147
+QL + VQ P ++GGL A+YI C TE + L + +++ + D +I+
Sbjct: 118 LQLCLAVQFPRQYGGLEAGAVYI--C----TEDAFPSKRLWQLIAQQRRLRTDAPEELIE 171
Query: 148 SIAFHFRHGFVDLA 161
I F H F++ A
Sbjct: 172 KIRFS-NHIFIEHA 184
>gi|403343876|gb|EJY71271.1| DNA repair protein XRCC3 [Oxytricha trifallax]
Length = 319
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 42/178 (23%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
Q R+++ C +++ L GG + + EI G G GKTQL IQL +N +P++ GGLGG
Sbjct: 57 QRPEIRLSSGCKIINDFLRGGFLSKRLYEIYGESGSGKTQLAIQLMLNSILPLKNGGLGG 116
Query: 110 KAIYI--GKCLG----------FYTEQ-----------SAVINYLDKFVSEH-------- 138
K++++ GK L F E + ++NY K + E+
Sbjct: 117 KSLFVITGKHLNEKRFNEMKEYFLIEHQGLTHENAVKDNIIMNYC-KTIEEYNKVFLNLV 175
Query: 139 -----KDVKVVIIDSIA-----FHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
++VK+VIID+I F G +D R+R + + L LA ++ L ++
Sbjct: 176 SRIQQENVKLVIIDNIHNVCDNFIKSEGSIDFLERSRFIQKHSKLLKKLAYQYDLTII 233
>gi|332231229|ref|XP_003264800.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Nomascus leucogenys]
Length = 340
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDS+ FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSVMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|145352283|ref|XP_001420481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580715|gb|ABO98774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG- 106
E ++ + IT+ A +D ILGGG R +TEI G GKTQL +AV Q+PVE GG
Sbjct: 114 ERRKDVVHITSGAAAVDAILGGGFESRAITEIYGEWRCGKTQLCHTIAVTTQMPVEMGGG 173
Query: 107 -------------LGGKAIYIGKCLGFYTE------QSAVINYLDKFVS---------EH 138
G + + I G + A ++ +D+ +
Sbjct: 174 CAKVAWIDTENTFRGDRLVQIANRFGLDADAVLSNVMVARVDTVDQMMHALIAIGAKMAE 233
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ K++++DSI FR +V +L+ R + L+ +L +A++F++A++ N
Sbjct: 234 EPFKLLVVDSIMAIFRVDYVARGELSERQQTLNQFLSRLRKIAEEFNVAVVLTN 287
>gi|318066037|ref|NP_001187314.1| meiotic recombination protein DMC1/LIM15 homolog [Ictalurus
punctatus]
gi|308322693|gb|ADO28484.1| meiotic recombination protein dmc1/lim15-like protein [Ictalurus
punctatus]
Length = 342
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+ + G QTA + + ++ ITT + D +LGGG+ +TE G
Sbjct: 72 VEKIKEAAGKLLMSGFQTASEYSMKRKQVF-HITTGSLEFDKLLGGGVESMAITEAFGEF 130
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN-- 129
GKTQL L V Q+P E G GGK I+I F + AV++
Sbjct: 131 RTGKTQLSHTLCVTAQLPGENGYSGGKIIFIDAENTFRPDRLKDIADRFNVDHEAVLDNV 190
Query: 130 -YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 191 LYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 250
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 251 MLSRLQKISEEYNVAVFVTNQMT 273
>gi|392341149|ref|XP_003754266.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Rattus
norvegicus]
Length = 470
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LNLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLGAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TE+ G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEVTGPPGCGKTQFCIMMSVLATLPTRLGGLEGAVLYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEHK 139
+ I + F +E K
Sbjct: 151 RLVEIAESRFPQYFNTEEK 169
>gi|340992754|gb|EGS23309.1| hypothetical protein CTHT_0009770 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 354
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 85/195 (43%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LDN+L GGI VTEI G G
Sbjct: 79 ILAEASKLVPMGFTTATEMHQRRSE-LICITTGSKNLDNLLAGGIETGSVTEIFGEFRTG 137
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P E GG GK +YI F + AV N Y
Sbjct: 138 KSQICHTLAVTCQLPFEMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYA 197
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ +H+ +VI+DS +R FV +L+ R L+ L
Sbjct: 198 RAYNCDHQLQLLNQAAAMMCETRFSLVIVDSATALYRTDFVGRGELSSRQTHLAKFMRTL 257
Query: 175 MNLAKKFSLALLEPN 189
LA +F +A++ N
Sbjct: 258 QRLADEFGVAVVITN 272
>gi|429963383|gb|ELA42927.1| DNA repair protein RAD51 [Vittaforma corneae ATCC 50505]
Length = 331
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 55/242 (22%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGT 39
E+ + +SA+ KL+ AGY ++ S+ A + + G
Sbjct: 18 ELKSVGVSASDVTKLVEAGYNTVQSLAFAPRKELLEVKGFSDVKVDKIIKEAAKLVPMGF 77
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+A + + E + ++T +LD +L GGI +TEI G GKTQL +AV+ Q
Sbjct: 78 TSATEYHAKRTE-VCYVSTGSVELDKLLHGGIESGSITEIFGEFRTGKTQLCHTIAVSCQ 136
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQ---------------SAVINYLDKFVSEHKD---- 140
+PVE GG GK IYI F +E+ I+Y + S+H++
Sbjct: 137 LPVENGGGAGKCIYIDTEGTFRSERLIPIAERLGLNPDTVLENISYARAYNSDHQNNLLI 196
Query: 141 ----------VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
V+I+DS +R +G +L R L+ L NLA+ + +A++
Sbjct: 197 HASAMMSENKYAVLIVDSATALYRTDYNGRGELGARQIHLARFLRTLTNLAETYGVAVVI 256
Query: 188 PN 189
N
Sbjct: 257 TN 258
>gi|148686665|gb|EDL18612.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Mus musculus]
Length = 349
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 37 RGTQ--TAWDMLQEEQ---ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
RG++ +A + Q+++ E R++ C LD LGGG+ +T + G GKTQL
Sbjct: 58 RGSRVLSALHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLA 117
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
+QL + VQ P ++GGL A+YI F
Sbjct: 118 LQLCLAVQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQPRLRTDAPEELIEKIRFSN 177
Query: 121 --YTEQSAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGF--VDLALRTRVLSG 169
+ E +A ++ L + VS+ + ++V++DSIA FR F A+R ++L
Sbjct: 178 HIFIEHAADVDTLLECVSKKVPILLSRGMARLVVVDSIAAPFRCEFHLQASAIRAKLLLS 237
Query: 170 IALKLMNLAKKFSLALLEPNLAT 192
+ L L+ F +L N T
Sbjct: 238 LGATLRRLSSTFRSPVLCINQVT 260
>gi|307595014|ref|YP_003901331.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429]
gi|307550215|gb|ADN50280.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429]
Length = 318
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 38/191 (19%)
Query: 32 SSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
S+ +SR T A + E + R+ T+ +D++L GG+ + + E G G GKTQL
Sbjct: 66 SNRVSRATDLAKNF-----EGIIRLRTNVRAIDDLLQGGLEPKAIYEFAGEFGTGKTQLC 120
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA---------------------VINY 130
QL+V VQ+ + GG+GG A+Y+ F + VIN
Sbjct: 121 HQLSVTVQLSQDKGGVGGAAVYLDTEEAFSPNRIVNIAQRFDLDPNEALDNIYVIKVINA 180
Query: 131 LD-----KF----VSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
D KF + E + K++++DSI +R F LA R + L+ I LM +A
Sbjct: 181 ADLEDRIKFDVVKLVEQANAKLIVVDSIIALYRAEFKGRERLAERQQRLNYILDWLMRIA 240
Query: 179 KKFSLALLEPN 189
K +++ ++ N
Sbjct: 241 KVYNVYVVLTN 251
>gi|444321406|ref|XP_004181359.1| hypothetical protein TBLA_0F03010 [Tetrapisispora blattae CBS 6284]
gi|387514403|emb|CCH61840.1| hypothetical protein TBLA_0F03010 [Tetrapisispora blattae CBS 6284]
Length = 332
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 32/172 (18%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++++ +++T D ILGGGI +TE+ G GKTQL L V Q+P E GG G
Sbjct: 88 RKNVFQLSTGAKQFDAILGGGIMSMSITEVFGEFRCGKTQLSHTLCVTTQLPRELGGAEG 147
Query: 110 KAIYIGKCLGFYTEQSAVI---------------NYLDKFVSEHK--------------D 140
K YI F E+ I +Y SEH+
Sbjct: 148 KVAYIDTEGTFRPERIKQIAERYELDPDACLENVSYARALNSEHQMELVEQLGEKLSSGA 207
Query: 141 VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++I+DSI +FR + +L R + L+ KL LA++F++A+ N
Sbjct: 208 YRLIIMDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNVAVFMTN 259
>gi|365761557|gb|EHN03202.1| Rad57p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 448
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +L GGI +TEI G GK+QL +QLA++VQ+ GGL GK +YI
Sbjct: 87 FTTADVAIDELLNGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEAEGGLAGKCVYIT 146
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG +N D EH +
Sbjct: 147 TEGDLPTQRLESMLSSRPAYEKLGISQSNIFTVNCNDLINQEHIINVQLPILLERSRGAI 206
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VI+DSI+ H R + + R L +A KL LA +SLA++ N L
Sbjct: 207 KLVIVDSISHHLRVELQNKSFRESQENKNYLDKMAEKLQILAHDYSLAVVVANQVGDKPL 266
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
S + + V QLG+++
Sbjct: 267 VNSPV------AHKAQVTDYDYQLGWLV 288
>gi|323349503|gb|EGA83727.1| Rad57p [Saccharomyces cerevisiae Lalvin QA23]
Length = 170
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 39/166 (23%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG------- 115
+D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 1 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTEGDLPT 60
Query: 116 -------------KCLGFYTEQSAVINYLDKFVSEH--------------KDVKVVIIDS 148
+ LG ++ D EH +K+VIIDS
Sbjct: 61 QRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSIKLVIIDS 120
Query: 149 IAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPN 189
I+ H R + + R L +A KL LA +SL+++ N
Sbjct: 121 ISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVAN 166
>gi|402594734|gb|EJW88660.1| DMC1 family protein [Wuchereria bancrofti]
Length = 432
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ RI+T DLD +LGGGI + +TE+ G GKTQL L V QI E
Sbjct: 184 ERRKLCYRISTGSRDLDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNF 243
Query: 108 -GGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHKD----------- 140
GGK IYI F ++ IN Y + S+H+
Sbjct: 244 KGGKVIYIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFH 303
Query: 141 -----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++I+DSI FR + +LA R + L+ + +L +A+++++A+ N T
Sbjct: 304 EELGIFKLLIVDSIMALFRVDYSGRGELAERQQKLAQMLSRLQKIAEEYNVAVFITNQMT 363
>gi|339899049|ref|XP_003392768.1| putative recombinase rad51 [Leishmania infantum JPCM5]
gi|321398639|emb|CBZ08967.1| putative recombinase rad51 [Leishmania infantum JPCM5]
Length = 687
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 38 GTQTAWDMLQEEQESLAR-----ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
G +T +M E Q A+ +TT +LD +LGGG+ VTEI G PG+GKTQL +
Sbjct: 199 GCRTVREMHAEFQARQAQGFPTHVTTFSRELDGVLGGGVPVGGVTEISGPPGVGKTQLLM 258
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVS 136
QLAV+ +PVEFGG+G G CL TE S V L++ +
Sbjct: 259 QLAVSCAMPVEFGGMG------GACLFVDTEGSFVAERLEQMAT 296
>gi|395819764|ref|XP_003783249.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Otolemur garnettii]
Length = 340
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + I+T + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHISTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGARGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|212546047|ref|XP_002153177.1| meiotic recombination protein (Dmc1), putative [Talaromyces
marneffei ATCC 18224]
gi|111380644|gb|ABH09699.1| DMC1-like protein [Talaromyces marneffei]
gi|210064697|gb|EEA18792.1| meiotic recombination protein (Dmc1), putative [Talaromyces
marneffei ATCC 18224]
Length = 337
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+++ + +I+T D ILGGG ++E+ G GKTQL ++V Q+P E GG
Sbjct: 90 HQRKKVFKISTGSKQFDTILGGGFQSSSISEVYGEFRCGKTQLSHTMSVIAQLPKEMGGG 149
Query: 108 GGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK------------- 139
GK YI F ++ A I+Y SEH+
Sbjct: 150 EGKVAYIDTEGTFRPDRIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAG 209
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++IDSI FR F +LA R + L+ ++L +LA++F++ +L N
Sbjct: 210 GQYRLLVIDSIMNCFRVDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMTN 263
>gi|351698467|gb|EHB01386.1| DNA repair protein XRCC3, partial [Heterocephalus glaber]
Length = 349
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 56/224 (25%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQE---SLARITTSCADLD 64
+S+ +L++A + L C T TA + Q+++ R++ C LD
Sbjct: 41 LSSPDVQRLLTAAASHLRGQC----------TLTALQLHQQKERFPTQHHRLSLGCPRLD 90
Query: 65 NILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI---------- 114
+L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 91 RLLSGGLPLDGITELAGRSSSGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDVFPSKR 150
Query: 115 ---------------GKCL-------GFYTEQSAVINYLDKFVSEHKD--------VKVV 144
G+ + + E +A ++ L + VS HK V+++
Sbjct: 151 LRQLIAQPQLRADVPGEVVQSIRFGDQIFVEHAADVDALLECVS-HKVPMLLSRGLVRLL 209
Query: 145 IIDSIAFHFRHGFVDLA--LRTRVLSGIALKLMNLAKKFSLALL 186
++DS+A FR F A R R+L + L L+ F +L
Sbjct: 210 VVDSVAAPFRCEFDSQASVARARLLQSLGATLRRLSSTFQSPVL 253
>gi|149044063|gb|EDL97445.1| rCG27697 [Rattus norvegicus]
Length = 345
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 45/197 (22%)
Query: 41 TAWDMLQEEQ---ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+ + E R++ C LD LGGG+ +T + G GKTQL +QL +
Sbjct: 64 TALHLFQQRESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGRSSAGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYIGKCLGF---------------------------------YTEQ 124
VQ P ++GGL A+YI F + E
Sbjct: 124 VQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIEQLQELRTDVPGEVTQKIRFGNHIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGF--VDLALRTRVLSGIALKLM 175
+A ++ L + VS+ + ++V++DSIA FR F A+R + L + L
Sbjct: 184 AADVDTLMECVSKRVPILLSRGMARLVVVDSIAAPFRCEFHLQASAVRAKHLHSLGAALQ 243
Query: 176 NLAKKFSLALLEPNLAT 192
L+ F +L N T
Sbjct: 244 RLSSTFRSPVLCINQVT 260
>gi|159483489|ref|XP_001699793.1| predicted protein [Chlamydomonas reinhardtii]
gi|158281735|gb|EDP07489.1| predicted protein [Chlamydomonas reinhardtii]
Length = 135
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
RI + DLD +LGGG+ +VTE GVPG+GKTQLG+QLAVNV
Sbjct: 92 RIISMARDLDALLGGGVAAGQVTEFCGVPGVGKTQLGMQLAVNV 135
>gi|123408472|ref|XP_001303202.1| DNA repair protein RAD51 homolog [Trichomonas vaginalis G3]
gi|84784038|gb|ABC61984.1| Rad51-like protein A [Trichomonas vaginalis]
gi|121884563|gb|EAX90272.1| DNA repair protein RAD51 homolog, putative [Trichomonas vaginalis
G3]
Length = 329
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I +A++ + G +A D Q +E + +TT +LD +LGGGI VTEI G G
Sbjct: 65 IMAAAAQLVPMGFASASDYNQIRKE-MVYLTTGSTELDKLLGGGIETGSVTEIFGEFRTG 123
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII 146
KTQL LAV Q+P+E GG GK ++I F E+ +I +F + DV +
Sbjct: 124 KTQLCHTLAVTCQLPIENGGGQGKCLWIDTEGTFRPER--IIPIAQRFGLDPDDV----M 177
Query: 147 DSIAF 151
D+IA+
Sbjct: 178 DNIAY 182
>gi|334310651|ref|XP_001378467.2| PREDICTED: DNA repair protein RAD51 homolog 2-like [Monodelphis
domestica]
Length = 268
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQ--ESLARITTSCADL 63
L +S + K+ Y +S + S + QTA++M E+ S A + T+ L
Sbjct: 31 LCLSPLELMKVTGQSYQGVSELLYVVSRACAPQMQTAYEMKLEKSGGPSSAFLATTLISL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G G GKTQ + ++V +P GGL G IYI F E
Sbjct: 91 DEALHGGVACGSLTEITGPSGCGKTQFCMMMSVLATLPTGMGGLEGAVIYIDTESAFSAE 150
Query: 124 ---QSAVINYLDKFVSEHK---------------------------------DVKVVIID 147
+ A + F +E K VK++IID
Sbjct: 151 RLIRIAEFRFPSFFNTEEKLLSMSSKIHLYKELTCNEVLKRIESLEEEIISNRVKLLIID 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALL 186
S+A R F ++ R+ L+ A L LA++FS+ ++
Sbjct: 211 SVASVVRKEFDTQLQGNMRERSNFLAREASLLKYLAEEFSIIVI 254
>gi|91078458|ref|XP_967492.1| PREDICTED: similar to Dmc1 homolog [Tribolium castaneum]
gi|270004852|gb|EFA01300.1| DMC1/LIM15 [Tribolium castaneum]
Length = 356
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 35/174 (20%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+I+T A+LD +LGGG+ +T++ G G GKTQ+ L V QIP E GGK ++I
Sbjct: 112 KISTGSANLDKLLGGGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPTE-DYSGGKVMFI 170
Query: 115 GKCLGF-------------YTEQSAVIN--YLDKFVSEH-----KDV-----------KV 143
F +E S + N Y+ + SEH K+V K+
Sbjct: 171 DTERSFRPNRIRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKL 230
Query: 144 VIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+I+DSI FR+ F+ L R + L+ L +++++++A+ N TT+
Sbjct: 231 LIVDSIIALFRNDFMGRGVLLNRQQKLAETMSLLKKISEEYNVAVFITNQVTTS 284
>gi|358057228|dbj|GAA96837.1| hypothetical protein E5Q_03510 [Mixia osmundae IAM 14324]
Length = 342
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 34 DISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQ 93
++ G TA D + + ITT +LDN+LGGGI +TE+ G GK+Q+ Q
Sbjct: 82 EVPMGFTTATD-YHNRRSDMVTITTGSKNLDNVLGGGIETGAITELFGEFRTGKSQICHQ 140
Query: 94 LAVNVQIPVEFGGLGGKAIYI 114
LAV Q+P++ GG GK +YI
Sbjct: 141 LAVTCQLPIDMGGGEGKCLYI 161
>gi|398021847|ref|XP_003864086.1| recombinase rad51, putative [Leishmania donovani]
gi|322502320|emb|CBZ37404.1| recombinase rad51, putative [Leishmania donovani]
Length = 687
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 38 GTQTAWDMLQEEQESLAR-----ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
G +T +M E Q A+ +TT +LD +LGGG+ VTEI G PG+GKTQL +
Sbjct: 199 GCRTVREMHAEFQARQAQGFPTHVTTFSRELDGVLGGGVPVGGVTEISGPPGVGKTQLLM 258
Query: 93 QLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
QLAV+ +PVEFGG+GG +++ F E+
Sbjct: 259 QLAVSCAMPVEFGGMGGACLFVDTEGSFVAER 290
>gi|4322544|gb|AAD16088.1| recombination/repair protein RadA [uncultured archaeon 'Obsidian
Pool #9']
Length = 133
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 33/132 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FY-- 121
TQ+ QL+VNVQ+P E GGL GKA+YI K L +Y
Sbjct: 1 TQICHQLSVNVQLPYEKGGLNGKAVYIDTEGTFRWERIENMAKALNLDPDVVESNIYYMR 60
Query: 122 ----TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q A+++ L + +++ +K+VI+DS+ HFR G +LA R + L+ +L
Sbjct: 61 AINSDHQIAIVDDLQELINKDPSIKLVIVDSVTSHFRAEYPGRENLAARQQKLNKHLHQL 120
Query: 175 MNLAKKFSLALL 186
+ LA+ ++LA++
Sbjct: 121 VRLAEMYNLAVV 132
>gi|401840270|gb|EJT43158.1| RAD57-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 448
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +L GGI +TEI G GK+QL +QLA++VQ+ GGL GK +YI
Sbjct: 87 FTTADVAIDELLSGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEAEGGLAGKCVYIT 146
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG +N D EH +
Sbjct: 147 TEGDLPTQRLESMLSSRPAYEKLGISQSNIFTVNCNDLINQEHIINVQLPILLERSRGAI 206
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VI+DSI+ H R + + R L +A KL LA +SLA++ N L
Sbjct: 207 KLVIVDSISHHLRVELQNKSFRESQENKNYLDKMAEKLQILAHDYSLAVVVANQVGDKPL 266
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
S + + V QLG+++
Sbjct: 267 VNSPV------AHKAQVTDYDYQLGWLV 288
>gi|194474078|ref|NP_001124039.1| meiotic recombination protein DMC1/LIM15 homolog [Rattus
norvegicus]
gi|149065923|gb|EDM15796.1| rCG59573, isoform CRA_b [Rattus norvegicus]
Length = 340
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA+ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVEKIKEAANKLIEPGFLTAF-QYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++I+DSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIVDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|27696723|gb|AAH43073.1| Xrcc3 protein [Mus musculus]
Length = 215
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 37 RGTQ--TAWDMLQEEQ---ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
RG++ +A + Q+++ E R++ C LD LGGG+ +T + G GKTQL
Sbjct: 58 RGSRVLSALHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLA 117
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHK----DVKVVIID 147
+QL + VQ P ++GGL A+YI C TE + L + +++ + D +I+
Sbjct: 118 LQLCLAVQFPRQYGGLEAGAVYI--C----TEDAFPSKRLWQLIAQQRRLRTDAPEELIE 171
Query: 148 SIAFHFRHGFVDLA 161
I F H F++ A
Sbjct: 172 KIRFS-NHIFIEHA 184
>gi|156842362|ref|XP_001644549.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156115194|gb|EDO16691.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 334
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LD+ILGGGI +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 96 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMAHTLCVTTQLPREMGGGEGKVAYID 155
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ + +++++
Sbjct: 156 TEGTFRPERIKQIAERYNLDPDACLENVSYARALNSEHQMELVEKLGEDLSSGEYRLIVM 215
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ KL +A++F++A+ N
Sbjct: 216 DSIMANFRVDYCGRGELNERQQKLNQHLFKLNRVAEEFNVAVFMTN 261
>gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus]
gi|585770|sp|P37383.1|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1
gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus]
Length = 339
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
I+A KL AGY ++ S+ A + + G TA +
Sbjct: 33 INANDVKKLEEAGYHTVESVAHAPKKELLNIKGISEAKADKILAEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +ITT +LD +L GGI +TE+ G GKTQL LAV Q+P++ G
Sbjct: 93 HQRRSE-IIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 AESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|238684533|gb|ACR54434.1| Rad51 [Mytilus edulis]
Length = 279
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q+ E + +ITT +LD +L GGI +TEI G G
Sbjct: 75 ILAEAAKLVPMGFTTATEFHQKRSE-IIQITTGSKELDKLLQGGIETGSITEIFGEFRTG 133
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
KTQL LAV Q+P++ GG GKA+YI F E+
Sbjct: 134 KTQLTHTLAVTCQLPIDMGGGEGKALYIDSEGTFRPER 171
>gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris
gallopavo]
Length = 339
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
I+A KL AGY ++ S+ A + + G TA +
Sbjct: 33 INANDVKKLEEAGYHTVESVAHAPKKELLNIKGISEAKADKILAEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +ITT +LD +L GGI +TE+ G GKTQL LAV Q+P++ G
Sbjct: 93 HQRRSE-IIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 AESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|6753650|ref|NP_034189.1| meiotic recombination protein DMC1/LIM15 homolog [Mus musculus]
gi|2500100|sp|Q61880.1|DMC1_MOUSE RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
gi|961476|dbj|BAA09590.1| MmLim15 protein [Mus musculus]
gi|1321647|dbj|BAA10969.1| DMC1 homologue [Mus musculus]
gi|109732931|gb|AAI16768.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Mus musculus]
gi|111601086|gb|AAI19082.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Mus musculus]
gi|148672696|gb|EDL04643.1| disrupted meiotic cDNA 1 homolog, isoform CRA_a [Mus musculus]
Length = 340
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA+ E ++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVEKIKEAANKLIEPGFLTAF-QYSERRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHEAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|83774236|dbj|BAE64361.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 341
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D ILGGG ++E+ G GKTQL ++V Q+P E G
Sbjct: 91 LSHQRKRVVRISTGSKQFDAILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMG 150
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 151 GADGKVAYIDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEF 210
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK 179
+ +++IIDSI FR + +LA R + L+ +KL ++A+
Sbjct: 211 TGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAE 256
>gi|355767815|gb|EHH62665.1| hypothetical protein EGM_21063 [Macaca fascicularis]
Length = 346
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD++L GG+ +TE+ G +GKTQL +QL +
Sbjct: 64 TALHLHQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLEAXAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 VADVDALLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|170591324|ref|XP_001900420.1| Meiotic recombination protein DMC1/LIM15 homolog [Brugia malayi]
gi|158592032|gb|EDP30634.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Brugia
malayi]
Length = 328
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ RI+T DLD +LGGGI + +TE+ G GKTQL L V QI E
Sbjct: 80 ERRKLCYRISTGSRDLDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNF 139
Query: 108 -GGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHKD----------- 140
GGK IYI F ++ IN Y + S+H+
Sbjct: 140 KGGKVIYIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFH 199
Query: 141 -----VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++I+DSI FR G +LA R + L+ + +L +A+++++A+ N T
Sbjct: 200 EELGIFKLLIVDSIMALFRVDYSGRGELAERQQKLAQMLSRLQKIAEEYNVAVFITNQMT 259
>gi|123408121|ref|XP_001303137.1| Meiotic recombination protein DMC1/LIM15 homolog [Trichomonas
vaginalis G3]
gi|121884492|gb|EAX90207.1| Meiotic recombination protein DMC1/LIM15 homolog, putative
[Trichomonas vaginalis G3]
Length = 338
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 32/167 (19%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RIT+ +LD +LGGG+ +TE+ G GKTQL L V Q+P+ G GK +I
Sbjct: 102 RITSGSTELDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQSGGQGKVCFI 161
Query: 115 GKCLGFYTEQSAVIN---------------YLDKFVSEHK--------------DVKVVI 145
F E+ VI Y F E + +++I
Sbjct: 162 DTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLLI 221
Query: 146 IDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
IDSI FR F +LA R + L + L LA +F++A+ N
Sbjct: 222 IDSITALFRVDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITN 268
>gi|344273765|ref|XP_003408689.1| PREDICTED: DNA repair protein XRCC3-like [Loxodonta africana]
Length = 341
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 42/174 (24%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ+P + GGL A+YI
Sbjct: 81 RLSLGCPVLDRLLRGGLPLDGITELAGCSSAGKTQLALQLCLAVQLPQQHGGLEAGAVYI 140
Query: 115 --------------------------GKCLG-------FYTEQSAVINYLDKFVSEHKDV 141
G+ L + E +A ++ L + VS +
Sbjct: 141 CTEDVFPDRRLQQLITHQPRLRAGVPGELLSKVRFGDQIFIEHAADVDTLLECVSRRVPI 200
Query: 142 -------KVVIIDSIAFHFRHGFVDLAL--RTRVLSGIALKLMNLAKKFSLALL 186
++V++DS+A FR F AL R R L + L +L+ F +L
Sbjct: 201 LLARGMARLVVLDSVAAPFRCEFDSQALTARARHLQTLGAALRHLSCSFQSPVL 254
>gi|303284847|ref|XP_003061714.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
gi|226457044|gb|EEH54344.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
Length = 371
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 59/246 (23%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSA-----------SSSDISR------------- 37
E+ +SAT K+ AGY ++ S+ + S + + +
Sbjct: 55 EMQSCGVSATDIKKVKEAGYATVKSVITVPKKFLIEIKGMSDAKVDKMIEAAGKLLGPGA 114
Query: 38 --GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
G QTA + LQ ++ IT+ +DN+L GG R +TEI G GKTQ+ LA
Sbjct: 115 AGGFQTAKE-LQLSRKDNVNITSGAETIDNVLKGGFPTRCLTEIYGEWRTGKTQICHTLA 173
Query: 96 VNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSE--- 137
V Q+P+ GG K +I F ++ AV++ + F E
Sbjct: 174 VTTQLPLNEGGGCAKVAWIDTEGTFRPDRIEKIAERFNLDAEAVLDNILVAKTFTHEMMT 233
Query: 138 -----------HKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
+ K++IIDSI HFR F +L+ R + L KL +A +F++
Sbjct: 234 NCLVALAARFSEEPFKLLIIDSIMAHFRVDFTGRGELSERQQKLGQFCSKLQKIADEFNI 293
Query: 184 ALLEPN 189
A++ N
Sbjct: 294 AVVYTN 299
>gi|109084988|ref|XP_001083970.1| PREDICTED: DNA repair protein XRCC3 isoform 2 [Macaca mulatta]
Length = 346
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD++L GG+ +TE+ G +GKTQL +QL +
Sbjct: 64 TALHLHQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL AIYI G+ L + E
Sbjct: 124 VQFPRQHGGLEAGAIYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 VADVDALLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|449481824|ref|XP_002195715.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Taeniopygia guttata]
Length = 339
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ + G TA++ E+++ + ++T + D +LGGGI +TE G
Sbjct: 68 KVDKIKEAANKLVEPGFLTAFE-YSEKRKMVFHVSTGSQEFDKLLGGGIESMAITEAFGE 126
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 127 FRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFIDTENTFRPDRLRDIADRFNVDHEAVLDN 186
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 187 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 246
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 247 QMLSRLQKISEEYNVAVFVTNQMT 270
>gi|345804171|ref|XP_003435154.1| PREDICTED: DNA repair protein XRCC3 [Canis lupus familiaris]
Length = 349
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ VTE+ G+ GKTQL +QL + VQ P GGL A+YI
Sbjct: 81 RLSLGCPVLDRLLRGGLPLDGVTELAGLSSAGKTQLALQLCLAVQFPPRHGGLDAGAMYI 140
Query: 115 --------------------------GKCLG-------FYTEQSAVINYLDKFVSEHKDV 141
G+ + + E A ++ L + V E V
Sbjct: 141 CTEDVFPNLRLQQLIAQQQRLRTDVPGEVVSRIKFSNQIFIEHVADVDSLLECVREKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDLAL--RTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F AL R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDGPALVPRARHLQALGAALRRLSCAFQSPVLCINQVT 260
Query: 193 TANLAESCLTCLRDSGSRKAVAAAA 217
A E T R G R + A
Sbjct: 261 EAT--EEQGTAPRPHGLRDERVSPA 283
>gi|399216906|emb|CCF73593.1| unnamed protein product [Babesia microti strain RI]
Length = 333
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
LQ+ + + ++TT + LD LGGGI +TE+ G GKTQL L V Q+P
Sbjct: 86 LQQRRTKVLKLTTGSSVLDQALGGGIETMAITELFGENRTGKTQLCHTLCVTAQLPSSMN 145
Query: 106 GLGGKAIYIG-----------KCLGFYTEQSAV----INYLDKFVSEH------------ 138
G GK +I + G Y S + I Y F EH
Sbjct: 146 GGNGKVCFIDTEGTFRPEKIIRIGGRYNMDSEIVLENILYARAFTHEHIITLLSTAASKM 205
Query: 139 --KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ ++IIDSI FR F +LA R + L+ + L L ++F++A+L N
Sbjct: 206 CEDNFSLLIIDSIMSLFRVDFAGRGELAERQQKLNKLLSGLSKLGEQFNIAILLTN 261
>gi|45201197|ref|NP_986767.1| AGR101Cp [Ashbya gossypii ATCC 10895]
gi|44986051|gb|AAS54591.1| AGR101Cp [Ashbya gossypii ATCC 10895]
gi|374110017|gb|AEY98922.1| FAGR101Cp [Ashbya gossypii FDAG1]
Length = 333
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T LD+ILGGG+ +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 95 ISTGSKQLDSILGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPREMGGGEGKVAYID 154
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ D +++I+
Sbjct: 155 TEGTFRPERIKQIAARYDLDPDACLENVSYARALNSEHQMELVEQLGQELASGDYRLLIV 214
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ +L +A+++++A+ N
Sbjct: 215 DSIMANFRVDYCGRGELNERQQKLNQHLSRLNRVAEEYNVAVFMTN 260
>gi|357453711|ref|XP_003597136.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355486184|gb|AES67387.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 484
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLA-RITTSCADLDNILGGGIGC 73
+L+ G + ++S + S + QT + ESLA + T LD L GGI
Sbjct: 40 ELLDVGMSEVTSAMAHISELVCPPCQTQ----RVRNESLAGHLPTQLKGLDEALCGGIPF 95
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
VTE+ G PGIGKTQ ++L++ +PV +GGL G+ IYI
Sbjct: 96 GVVTELVGPPGIGKTQFCLKLSLLASLPVNYGGLDGRVIYI 136
>gi|346465319|gb|AEO32504.1| hypothetical protein [Amblyomma maculatum]
Length = 296
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ +++ + +ITT +LD +LGGGI +TE+ G GKTQL LAV Q+P+E
Sbjct: 88 IHQKRSDIVQITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHMLAVTCQLPIEHS 147
Query: 106 GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
G GK +YI F E+ ++ DK+ +DV +D++A+
Sbjct: 148 GGEGKCLYIDTEGTFRPER--LLAVADKYGLSGQDV----LDNVAY 187
>gi|167391058|ref|XP_001739621.1| meiotic recombination protein dmc1 [Entamoeba dispar SAW760]
gi|165896627|gb|EDR23978.1| meiotic recombination protein dmc1, putative [Entamoeba dispar
SAW760]
Length = 347
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ +ITT + D +LGGGI VTE+ G GKTQL LAV Q+P G
Sbjct: 102 ERRANVIKITTGSSQFDQLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGG 161
Query: 108 GGKAIYIGKCLGFYTE------------QSAVINYL---DKFVSEHK------------- 139
GK YI F E Q+AV++ + + E +
Sbjct: 162 NGKVAYIDTEGTFRPERITQIAERFGVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAE 221
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++IIDS+ FR F +L+ R + L + KL+ ++++F++A++ N
Sbjct: 222 DHFRILIIDSVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITN 275
>gi|1066001|dbj|BAA09932.1| HsLim15 [Homo sapiens]
Length = 340
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + V++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDPVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|363753334|ref|XP_003646883.1| hypothetical protein Ecym_5304 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890519|gb|AET40066.1| hypothetical protein Ecym_5304 [Eremothecium cymbalariae
DBVPG#7215]
Length = 482
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 46/207 (22%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT D+D +L GGI +TEI G GK+QL +QLA++VQ+P +F G G+ ++I
Sbjct: 87 FTTGDLDIDAVLNGGIYTHGITEIFGESSSGKSQLLMQLALSVQLPSKFNGFSGQCVFIT 146
Query: 116 KCLGFYTEQ-SAVINYLDKFV--------------------------------SEHKDVK 142
T++ +I +FV + +K
Sbjct: 147 TEGDLPTQRLEGIIQLRKEFVENGVSQNNIYTVTCNEWAAQNHILSVQLPILLERNPKIK 206
Query: 143 VVIIDSIAFHFRHGFVDLALRTRV-----LSGIALKLMNLAKKFSLALLEPNLATTANLA 197
+VI+DS++ H R + + + + +A L+ L++K +A++ AN
Sbjct: 207 LVIVDSVSHHLRVELESSSFKASLDNRSQIDKMAQNLLYLSQKHGVAVV------VANQV 260
Query: 198 ESCLTCLRDSGSRKAVAAAAAQLGFVL 224
L R +R+ V QLGF++
Sbjct: 261 GDKLLPAR--PTRQTVMDYDYQLGFMI 285
>gi|383863607|ref|XP_003707271.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Megachile
rotundata]
Length = 341
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + + ++ +TT ++LD +LGGGI +TEI G GKTQL LAVN Q+P++ G
Sbjct: 93 IHQTRSNIVFVTTGSSELDRLLGGGIETGSITEIFGEFRSGKTQLCHTLAVNCQLPIDMG 152
Query: 106 GLGGKAIYI 114
G GK +YI
Sbjct: 153 GAEGKCLYI 161
>gi|195060405|ref|XP_001995799.1| GH17957 [Drosophila grimshawi]
gi|193896585|gb|EDV95451.1| GH17957 [Drosophila grimshawi]
Length = 246
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 43/180 (23%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S RI T LD L GGI +V EI G PG G TQL ++L +NVQI + GL GKA
Sbjct: 15 SSQRIKTDIGPLDKFLRGGIRTGKVYEIVGKPGTGGTQLCMKLCLNVQILKDARGLAGKA 74
Query: 112 IYIGKCLGF-------------------YTEQSAV--------INYLD------------ 132
+Y+ + F + +S ++YL+
Sbjct: 75 LYLDTRMAFNPDALRNLAEDLAKSLDRRWQMESTPSASDLLRNVHYLECRNAAQLVAGIL 134
Query: 133 ---KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K++ + ++K++++DSI+F R ++ RT +L + + NL +A + N
Sbjct: 135 NCHKYLEDDPNIKLIVVDSISFAIR-MLDNVFERTELLMELHDYMRNLQTNHDVAFVLTN 193
>gi|392867439|gb|EJB11331.1| meiotic recombinase Dmc1 [Coccidioides immitis RS]
Length = 338
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + RI+T D IL GG ++E+ G GK
Sbjct: 76 CQPSAS----GFITAME-LGHQRKRVVRISTGSKQFDAILNGGFQSMSISEVYGEFRCGK 130
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P GG GK YI F E+ S++ N Y
Sbjct: 131 TQLSHTMSVVAQLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYAR 190
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 191 ALNSEHQLELLNTLSKEFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 250
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 251 HMAEEFNVCVLMTN 264
>gi|320032013|gb|EFW13969.1| meiotic recombination protein dmc1 [Coccidioides posadasii str.
Silveira]
Length = 338
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 37/194 (19%)
Query: 28 CSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
C S+S G TA + L +++ + RI+T D IL GG ++E+ G GK
Sbjct: 76 CQPSAS----GFITAME-LGHQRKRVVRISTGSKQFDAILNGGFQSMSISEVYGEFRCGK 130
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------------SAVIN--YLD 132
TQL ++V Q+P GG GK YI F E+ S++ N Y
Sbjct: 131 TQLSHTMSVVAQLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYAR 190
Query: 133 KFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
SEH+ + +++IIDSI FR + +LA R + L+ +KL
Sbjct: 191 ALNSEHQLELLNTLSKEFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLA 250
Query: 176 NLAKKFSLALLEPN 189
++A++F++ +L N
Sbjct: 251 HMAEEFNVCVLMTN 264
>gi|195399463|ref|XP_002058339.1| GJ16038 [Drosophila virilis]
gi|194150763|gb|EDW66447.1| GJ16038 [Drosophila virilis]
Length = 245
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 40/144 (27%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
E ITT LD L GGI +V E+ G PG GKTQL ++L +NVQIP GL K
Sbjct: 12 EKSPTITTGITALDKCLRGGIRPGKVYELVGKPGTGKTQLCMKLCLNVQIPRYACGLASK 71
Query: 111 AIYIGKCLGFY-------------------------TEQSAVINYLD------------- 132
A+Y F T+ + Y+D
Sbjct: 72 ALYFDTRKDFNPARLKELADDLAARLRCTSISAPTATQMLQNVYYVDCRNTAQLVAGLLN 131
Query: 133 --KFVSEHKDVKVVIIDSIAFHFR 154
K++ + ++K++I+DSI+F R
Sbjct: 132 CHKYLEKEPNIKLIIVDSISFAIR 155
>gi|328724498|ref|XP_001942729.2| PREDICTED: DNA repair protein XRCC3-like [Acyrthosiphon pisum]
Length = 330
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
+TT C +D +LGGG+ +TEI G G GKTQ +Q+A+ VQ+P+ G A YI
Sbjct: 88 LTTGCKQIDKLLGGGLFKYGITEISGESGCGKTQFCLQIALTVQLPLSLKGAKSGAAYIC 147
Query: 116 K-------------------------------CLGFYTE-----QSAVINYLDKFVSE-- 137
C Y + A + L K + E
Sbjct: 148 TEDRFPSSRIQQMISNIRFKYQCDSKIDMNELCQTDYGDNILISHIATVEDLKKCIHEML 207
Query: 138 -----HKDVKVVIIDSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
H+ +K+++IDSI FR + ++ R+R L IA+ L L+ + L ++ N
Sbjct: 208 PRVLLHRPIKLIVIDSITAVFRGEYTPSEVPRRSRDLRDIAVFLHKLSVEHGLWIICVNQ 267
Query: 191 ATTA 194
T++
Sbjct: 268 VTSS 271
>gi|355563673|gb|EHH20235.1| hypothetical protein EGK_03045 [Macaca mulatta]
Length = 340
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 35/196 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLA 184
+ +L +++++++A
Sbjct: 248 QMLSRLQKISEEYNVA 263
>gi|403282995|ref|XP_003932915.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Saimiri boliviensis boliviensis]
Length = 339
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 68 KVDKIKEAANKLIEPGILTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 126
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P GGK I+I F + AV++
Sbjct: 127 FRTGKTQLSHTLCVTAQLPGAGDYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 186
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 187 VLYARAYTSEHQMELLDYVAAKFHEEPGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 246
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 247 QMLSRLQKISEEYNVAIFVTNQMT 270
>gi|4322494|gb|AAD16063.1| recombination/repair protein RadA [Cenarchaeum symbiosum]
Length = 369
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++S+ ITT LD +LGGGI + +TE+ G G GKTQ + V Q P E GGLGG
Sbjct: 54 RQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGG 113
Query: 110 KAIYIGKCLGFYTEQSAVI---NYLDK------------FVSEHK--------------D 140
+YI F E+ I N +D + S H+ +
Sbjct: 114 GVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEEN 173
Query: 141 VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+K++I DS FR ++ LA R + L L +A+ ++ A+L N +++
Sbjct: 174 IKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 230
>gi|355693597|gb|EHH28200.1| hypothetical protein EGK_18581 [Macaca mulatta]
gi|387540488|gb|AFJ70871.1| DNA repair protein XRCC3 [Macaca mulatta]
Length = 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD++L GG+ +TE+ G +GKTQL +QL +
Sbjct: 64 TALHLHQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 VADVDALLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera]
gi|380025667|ref|XP_003696590.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Apis florea]
Length = 341
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + + ++ +TT ++LD +LGGGI +TEI G GKTQL LAVN Q+P++ G
Sbjct: 93 IHQTRSNIVFVTTGSSELDRLLGGGIETGSITEIFGEFRSGKTQLCHTLAVNCQLPIDMG 152
Query: 106 GLGGKAIYI 114
G GK +YI
Sbjct: 153 GAEGKCLYI 161
>gi|340714319|ref|XP_003395677.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Bombus
terrestris]
gi|350417329|ref|XP_003491369.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1
[Bombus impatiens]
gi|350417331|ref|XP_003491370.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2
[Bombus impatiens]
Length = 341
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + + ++ +TT ++LD +LGGGI +TEI G GKTQL LAVN Q+P++ G
Sbjct: 93 IHQTRSNIVFVTTGSSELDRLLGGGIETGSITEIFGEFRSGKTQLCHTLAVNCQLPIDMG 152
Query: 106 GLGGKAIYI 114
G GK +YI
Sbjct: 153 GAEGKCLYI 161
>gi|332254242|ref|XP_003276237.1| PREDICTED: DNA repair protein XRCC3 [Nomascus leucogenys]
Length = 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 84/199 (42%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q++Q A R++ C LD +L GG+ +TE+ G GKTQL +QL +
Sbjct: 64 TALQLHQQKQRFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLLKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++VIIDS+A FR F A R R L + L
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVIIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|296487030|tpg|DAA29143.1| TPA: DMC1 dosage suppressor of mck1 homolog [Bos taurus]
Length = 340
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GG I+I F + +AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYSGGXIIFIDTENTFRPDRLRDIADRFNVDHNAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 248 QMLSRLQKISEEYNVAVFVTNQMT 271
>gi|402877292|ref|XP_003902365.1| PREDICTED: DNA repair protein XRCC3 [Papio anubis]
Length = 346
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD++L GG+ +TE+ G +GKTQL +QL +
Sbjct: 64 TALHLHQQKERFPAQHQRLSLGCPVLDSLLCGGLPLDGITELAGRSSVGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|340719388|ref|XP_003398136.1| PREDICTED: DNA repair protein XRCC3-like [Bombus terrestris]
Length = 254
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+E+E +TT C D +L GGI R +T+I G GKTQL +QL + VQ+P+ GG
Sbjct: 12 KEREKF--LTTGCPKFDTLLQGGITTRGITQIYGAASTGKTQLALQLCLTVQLPITEGGF 69
Query: 108 GGKAIYI 114
A+YI
Sbjct: 70 AAGAVYI 76
>gi|311698168|gb|ADQ00378.1| Dmc1 [Pneumocystis murina]
gi|311698170|gb|ADQ00379.1| Dmc1 [Pneumocystis murina]
Length = 336
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 58/253 (22%)
Query: 15 KLISAGYTSLSSICSASSSDISR---GTQTAWDMLQE--------------EQESLAR-- 55
KL SAGY ++ SI A+ ++S+ ++ + L+E E S R
Sbjct: 37 KLKSAGYCTVMSIQMATRRNLSKIKGFSEAKVEKLKEIAQKLCPPPFQTAMEVSSFRRRV 96
Query: 56 --ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
I+T D +LGGGI +TE+ G GKTQ+ + V Q+P E GG GKA Y
Sbjct: 97 NYISTGSKQFDAMLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKEMGGAEGKAAY 156
Query: 114 --------------IGKCLGFYTEQSA----------------VINYLDKFVSEHKDVKV 143
I G EQ+ +IN + SE ++
Sbjct: 157 LDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRL 216
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC 200
+I+DSI FR G +L+ R + L+ + +L +A+++++A+ N A+
Sbjct: 217 LIVDSIMALFRVDYSGRGELSERQQKLNIMLSRLTRIAEEYNIAVFLTNQVQ----ADPG 272
Query: 201 LTCLRDSGSRKAV 213
T + S RK V
Sbjct: 273 ATLMFASNDRKPV 285
>gi|311698176|gb|ADQ00382.1| Dmc1 [Pneumocystis jirovecii]
Length = 337
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 58/253 (22%)
Query: 15 KLISAGYTSLSSICSASSSDISR---GTQTAWDMLQE--------------EQESLAR-- 55
KL +AGY ++ SI A+ ++S+ + D L+E E S R
Sbjct: 38 KLKTAGYCTVMSIQMATRRNLSKIKGFSDAKVDKLKEIIQKLCPPPFQTAMEVSSFRRRV 97
Query: 56 --ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
I+T D +LGGGI +TE+ G GKTQ+ + V Q+P E GG GKA Y
Sbjct: 98 NYISTGSKQFDAMLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPREMGGAEGKAAY 157
Query: 114 --------------IGKCLGFYTEQSA----------------VINYLDKFVSEHKDVKV 143
I G EQ+ +IN + SE ++
Sbjct: 158 LDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRL 217
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC 200
+I+DSI FR G +L+ R + L+ + +L +A+++++A+ N A+
Sbjct: 218 LIVDSIMALFRVDYSGRGELSERQQKLNVMLSRLNRIAEEYNIAVFLTNQVQ----ADPG 273
Query: 201 LTCLRDSGSRKAV 213
T + S RK V
Sbjct: 274 ATLMFASNDRKPV 286
>gi|389632217|ref|XP_003713761.1| DNA repair protein rhp51 [Magnaporthe oryzae 70-15]
gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae]
gi|351646094|gb|EHA53954.1| DNA repair protein rhp51 [Magnaporthe oryzae 70-15]
gi|440473931|gb|ELQ42700.1| hypothetical protein OOU_Y34scaffold00194g12 [Magnaporthe oryzae
Y34]
gi|440489122|gb|ELQ68800.1| hypothetical protein OOW_P131scaffold00217g12 [Magnaporthe oryzae
P131]
Length = 353
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LD +LGGGI VTE+ G G
Sbjct: 78 ILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTMLGGGIETGSVTELFGEFRTG 136
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P + GG GK +YI F + AV N Y
Sbjct: 137 KSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYA 196
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++I+DS +R F+ +L+ R L+ +L
Sbjct: 197 RAYNSDHQLQLLNQASAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQTHLAKFMRQL 256
Query: 175 MNLAKKFSLALLEPN 189
LA +F +A++ N
Sbjct: 257 QRLADEFGIAVVISN 271
>gi|58262116|ref|XP_568468.1| meiotic recombination-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230641|gb|AAW46951.1| meiotic recombination-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 323
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCAD 62
V+ L ++ T R L+ S + + GT+ A + + ++ ITT
Sbjct: 37 VTILGVAQTPRKNLLKIKGLSEAKVEKLKPPAFLTGTEIA-----DRRANVVYITTGSKS 91
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT 122
+D +LGGGI + +TE+ G GKTQL L V+ Q+P + GG GK YI F
Sbjct: 92 VDAMLGGGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQGGGSGKVAYIDTEGTFRP 151
Query: 123 EQSAVINYLDKF-----------------VSEH---------------KDVKVVIIDSIA 150
++ + D+F SEH + K++I+DSI
Sbjct: 152 DRVRAV--ADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKLLIVDSIM 209
Query: 151 FHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
FR + +L+ R + L+ +L LA++F++A++ N
Sbjct: 210 NLFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAIVLTN 251
>gi|405123640|gb|AFR98404.1| MmLim15 protein [Cryptococcus neoformans var. grubii H99]
Length = 330
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 37/169 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
ITT +D +LGGGI + +TE+ G GKTQL L V+ Q+P + GG GK YI
Sbjct: 92 ITTGSKSVDAMLGGGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQGGGSGKVAYID 151
Query: 116 KCLGFYTEQSAVINYLDKF-----------------VSEH---------------KDVKV 143
F ++ + D+F SEH + K+
Sbjct: 152 TEGTFRPDRVRAV--ADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 209
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DSI FR + +L+ R + L+ +L LA++F++A++ N
Sbjct: 210 LIVDSIMNLFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAVVLTN 258
>gi|346470495|gb|AEO35092.1| hypothetical protein [Amblyomma maculatum]
Length = 337
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ +++ + +ITT +LD +LGGGI +TE+ G GKTQL LAV Q+P+E
Sbjct: 90 IHQKRSDIVQITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHMLAVTCQLPIEHS 149
Query: 106 GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
G GK +YI F E+ ++ DK+ +DV +D++A+
Sbjct: 150 GGEGKCLYIDTEGTFRPER--LLAVADKYGLSGQDV----LDNVAY 189
>gi|407044782|gb|EKE42819.1| meiotic recombinase Dmc1 protein [Entamoeba nuttalli P19]
Length = 347
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ +ITT + D +LGGGI VTE+ G GKTQL LAV Q+P G
Sbjct: 102 ERRANVIKITTGSSQFDQLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGG 161
Query: 108 GGKAIYIGKCLGFYTE------------QSAVINYL---DKFVSEHK------------- 139
GK YI F E Q+AV++ + + E +
Sbjct: 162 NGKVAYIDTEGTFRPERIAQIAERFGVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAE 221
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++IIDS+ FR F +L+ R + L + KL+ ++++F++A++ N
Sbjct: 222 DHFRMLIIDSVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITN 275
>gi|357479303|ref|XP_003609937.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510992|gb|AES92134.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 341
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 14 GKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGC 73
GKL+ G+TS S L ++ES+ +ITT +LD IL GGI
Sbjct: 81 GKLVPMGFTSASE-------------------LHAQRESIIQITTGSRELDKILEGGIET 121
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDK 133
+TE+ G GKTQL L V Q+P++ GG GKA+YI F ++ ++ D+
Sbjct: 122 GSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQR--LLQIADR 179
Query: 134 FVSEHKDVKVVIIDSIAFHFRH 155
F DV + + A++ H
Sbjct: 180 FGLNGPDVLENVAYARAYNTDH 201
>gi|67482461|ref|XP_656580.1| Meiotic recombination protein DMC1 [Entamoeba histolytica
HM-1:IMSS]
gi|56473788|gb|EAL51192.1| Meiotic recombination protein DMC1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704808|gb|EMD44979.1| meiotic recombination protein DMC1, putative [Entamoeba histolytica
KU27]
Length = 347
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ +ITT + D +LGGGI VTE+ G GKTQL LAV Q+P G
Sbjct: 102 ERRANVIKITTGSSQFDQLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGG 161
Query: 108 GGKAIYIGKCLGFYTE------------QSAVINYL---DKFVSEHK------------- 139
GK YI F E Q+AV++ + + E +
Sbjct: 162 NGKVAYIDTEGTFRPERIAQIAERFGVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAE 221
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++IIDS+ FR F +L+ R + L + KL+ ++++F++A++ N
Sbjct: 222 DHFRMLIIDSVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITN 275
>gi|442535550|gb|AGC52848.1| XRCC3, partial [Macrobiotus cf. harmsworthi EABP-2013]
Length = 230
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++ C LD GG+ + E G+ G GKTQ+ +QLA Q+P E GGL G +YI
Sbjct: 49 LSLGCPHLDRFFRGGLRLEHLVEFTGLAGSGKTQICLQLATTAQLPEEKGGLNGDVLYIF 108
Query: 116 KCLGF------------------------------YTEQSAVINYLDKFVS-------EH 138
F + E L++F+
Sbjct: 109 TENNFPAGRLVEIVEYRKSLSMAQSFPSVPSTDRIFVEHLDTYEKLEEFLEGKVYGMLSQ 168
Query: 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
K +K++IIDSI FR+ L R++ + I L L K+SL ++
Sbjct: 169 KPIKLLIIDSITNVFRYYDGKLEERSKKIQCIGRILEELKSKYSLMVI 216
>gi|118575453|ref|YP_875196.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
gi|145559520|sp|O93748.2|RADA_CENSY RecName: Full=DNA repair and recombination protein RadA
gi|118193974|gb|ABK76892.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
Length = 398
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++S+ ITT LD +LGGGI + +TE+ G G GKTQ + V Q P E GGLGG
Sbjct: 83 RQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGG 142
Query: 110 KAIYIGKCLGFYTEQSAVI---NYLDK------------FVSEHK--------------D 140
+YI F E+ I N +D + S H+ +
Sbjct: 143 GVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEEN 202
Query: 141 VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+K++I DS FR ++ LA R + L L +A+ ++ A+L N +++
Sbjct: 203 IKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 259
>gi|403284072|ref|XP_003933408.1| PREDICTED: DNA repair protein XRCC3 [Saimiri boliviensis
boliviensis]
Length = 367
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD +L GG+ +TE+ G GKTQL +QL +
Sbjct: 85 TALHLCQQKERFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGHSSAGKTQLALQLCLA 144
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 145 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAHQPRLRTDVPGELLQKLRFGSQIFIEH 204
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDLA--LRTRVLSGIALKLM 175
+A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 205 AADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASIPRARCLQSLGATLR 264
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 265 ELSSAFQSPVLCINQVTEA 283
>gi|126277684|ref|XP_001370830.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1
[Monodelphis domestica]
Length = 339
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
I+A KL AGY ++ ++ A + + G TA +
Sbjct: 33 INANDLKKLEEAGYHTVEAVAYAPKKELINVKGISEAKADKILAEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q+ E + +ITT +LD +L GGI +TEI G GKTQ+ LAV Q+P++ G
Sbjct: 93 HQQRSE-IIQITTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 VESRYALLIVDSSTALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|134118469|ref|XP_772121.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254728|gb|EAL17474.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 330
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 37/179 (20%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + + ++ ITT +D +LGGGI + +TE+ G GKTQL L V+ Q+P + G
Sbjct: 82 IADRRANVVYITTGSKSVDAMLGGGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQG 141
Query: 106 GLGGKAIYIGKCLGFYTEQSAVINYLDKF-----------------VSEH---------- 138
G GK YI F ++ + D+F SEH
Sbjct: 142 GGSGKVAYIDTEGTFRPDRVRAV--ADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAI 199
Query: 139 -----KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ K++I+DSI FR + +L+ R + L+ +L LA++F++A++ N
Sbjct: 200 RFVEERAYKLLIVDSIMNLFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAIVLTN 258
>gi|221128161|ref|XP_002162925.1| PREDICTED: DNA repair protein XRCC3-like, partial [Hydra
magnipapillata]
Length = 202
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 38/214 (17%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICS-----------------------ASSSDISR 37
M ++ L I+A+ + +LI A T +SS+ S A++ +
Sbjct: 1 MSINNLDINASIKQQLIKARITEVSSLFSLTIYELKEKVSLNESSLKELLSVAANYLLKS 60
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
+TA+ + E+ +++T C +D L GGI VTEI G GKTQL +Q+ +N
Sbjct: 61 SIKTAYSIHTNEEYKHHKLSTGCELVDQCLHGGIIFPGVTEICGESASGKTQLCLQICLN 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
I + + +T ++N + ++ +K++++DS+A FR +
Sbjct: 121 ALISDSYSSILD---------DLWT----LLNIKVDLLLSNQKIKLIVLDSVAALFRAEY 167
Query: 158 --VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++ R+++L+ LKL ++++K+ + + N
Sbjct: 168 DASNMINRSQMLAKFGLKLHHISQKYKICFVVVN 201
>gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis]
Length = 340
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ ITT A+LD +LGGGI +TEI G GK+QL LAVN Q+PV+ GG K
Sbjct: 98 NIVYITTGSAELDRLLGGGIETGSITEIFGEFRTGKSQLCHTLAVNCQLPVDMGGAEAKC 157
Query: 112 IYI 114
IYI
Sbjct: 158 IYI 160
>gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818]
Length = 332
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSS----------------------ICSASSSDISRGTQTAWDM 45
ISA KL AGY ++ S I + +S + G TA +
Sbjct: 26 ISANDCRKLTDAGYHTVESVAYVPKKQLLGVKGISEAKADKIINEASKLLPMGFTTASEF 85
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q QE + I+ +LD +L GGI +TE+ G GKTQL LAV Q+P++ G
Sbjct: 86 HQRRQE-IVNISCGSKELDTLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQG 144
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK +YI F E+ + Y + S+H+
Sbjct: 145 GAEGKCLYIDTEGTFRPERLLAVAERYGLSGEDVLDNVAYARAYNSDHQMHLLQQASAMM 204
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++++DS FR + +L+ R L+ LM LA +F +A++ N
Sbjct: 205 AESRYALMVVDSATALFRTDYSGRGELSARQMALAQFLRTLMRLADEFGIAVVITN 260
>gi|385805797|ref|YP_005842195.1| DNA repair and recombination protein RadA [Fervidicoccus fontis
Kam940]
gi|383795660|gb|AFH42743.1| DNA repair and recombination protein RadA [Fervidicoccus fontis
Kam940]
Length = 515
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 34/132 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYI--------------GKCLG----------FY-- 121
TQ+ QL+VNVQ+P + GGL G+A+YI + LG FY
Sbjct: 313 TQISHQLSVNVQLPPDKGGLSGRAVYIDSEGTFRWERIEAMARALGLNPDEVMENIFYIR 372
Query: 122 ----TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q AV+ + K + E K +K+V++DSI HFR G +LA R + L+ +L
Sbjct: 373 AVNSDHQMAVVEEVTKMIQE-KGIKLVVVDSITGHFRAEYPGRENLASRQQKLNRHLHQL 431
Query: 175 MNLAKKFSLALL 186
M +A+ +++A++
Sbjct: 432 MRIAEIYNIAVV 443
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 24/102 (23%)
Query: 7 PISATQRGKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDMLQ-------- 47
P +AT KLI AGY +L +I A+ +IS R + A D L+
Sbjct: 43 PATAT---KLIEAGYGTLEAIAVATPQEISAAVGIPINTAQRAIKAARDALEIRFKTALE 99
Query: 48 --EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
+E++S+ +ITT LD++LGGG+ R +TE G G GK
Sbjct: 100 LKKERQSVGKITTGSKSLDDLLGGGVETRTMTEFFGEFGTGK 141
>gi|427789927|gb|JAA60415.1| Putative meiotic recombination protein dmc1 [Rhipicephalus
pulchellus]
Length = 337
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ +++ + +ITT +LD +LGGGI +TE+ G GKTQL LAV Q+P+E
Sbjct: 90 IHQKRSDIVQITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHMLAVTCQLPIEHS 149
Query: 106 GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
G GK +YI F E+ ++ DK+ DV +D++A+
Sbjct: 150 GGEGKCLYIDTEGTFRPER--LLAVADKYGLSGPDV----LDNVAY 189
>gi|321265185|ref|XP_003197309.1| meiotic recombination-related protein [Cryptococcus gattii WM276]
gi|317463788|gb|ADV25522.1| Meiotic recombination-related protein, putative [Cryptococcus
gattii WM276]
Length = 308
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 37/177 (20%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+ + ++ ITT +D +LGGGI + +TE+ G GKTQL L V+ Q+P + GG
Sbjct: 62 DRRANVVYITTGSKSVDAMLGGGIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQGGG 121
Query: 108 GGKAIYIGKCLGFYTEQSAVINYLDKF-----------------VSEH------------ 138
GK YI F ++ + D+F SEH
Sbjct: 122 SGKVAYIDTEGTFRPDRVRAV--ADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRF 179
Query: 139 ---KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ K++I+DSI FR + +L+ R + L+ +L LA++F++A++ N
Sbjct: 180 VEERAYKLLIVDSIMNLFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAVVLTN 236
>gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
Length = 338
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 33/200 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ A+ ++ G TA D+L E ++ L ++T +D +L GGI +TE+ G
Sbjct: 72 EKMLKAAREMVNVGFTTAADVL-ESRKDLITLSTGSNAVDELLKGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK-- 133
GKTQL QL V Q+PV+ GG GKA+YI F ++ I + LD
Sbjct: 131 TGKTQLCHQLCVTCQLPVDRGGGEGKALYIDTEGTFRPQRLQAIAERYGLDGDSVLDNVA 190
Query: 134 ----FVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
+ SEH+ +VI+DS FR + +LA R + L+
Sbjct: 191 FARAYNSEHQMQLLIQASAMMAESRFALVIVDSATALFRTDYSGRGELAARQQELAKFLR 250
Query: 173 KLMNLAKKFSLALLEPNLAT 192
L +A +F +A++ N T
Sbjct: 251 ALTRMADEFGVAVVITNQMT 270
>gi|345570489|gb|EGX53310.1| hypothetical protein AOL_s00006g176 [Arthrobotrys oligospora ATCC
24927]
Length = 406
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA D + E++ L ITT LD +L GGI +TEI G GK+QL L
Sbjct: 142 VPMGFTTATD-IHEQRSKLISITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQLCHTL 200
Query: 95 AVNVQIPVEFGGLGGKAIYI--------------GKCLGFYTEQS-AVINYLDKFVSEHK 139
AV Q+P++ GG GK +YI + G E+ + Y + S+H+
Sbjct: 201 AVTCQLPLDMGGGEGKCLYIDTEGTFRPVRLLAVAQRYGLNGEEVLDNVAYARAYNSDHQ 260
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DS +R F DL+ R L+ +L LA +F
Sbjct: 261 LQLLNMAAQMMTETRFSLLIVDSATSLYRTDFSGRGDLSARQMHLARFMRQLQRLADEFG 320
Query: 183 LALL 186
+A++
Sbjct: 321 IAVV 324
>gi|440295039|gb|ELP87968.1| meiotic recombination protein dmc1, putative [Entamoeba invadens
IP1]
Length = 340
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ +ITT A D +LGGGI VTE+ G GKTQL LAV Q+P G
Sbjct: 95 ERRANVIKITTGSAQFDTLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTAQLPANLKGA 154
Query: 108 GGKAIYIGKCLGFYTE------------QSAVINYL---DKFVSEHK------------- 139
GK YI F E Q+AV++ + + E +
Sbjct: 155 NGKVAYIDTEGTFRPERITQIAERFGVDQTAVLDNILIARAYTHEQQFDLLVEIAARMAE 214
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++I+DS+ FR F +L+ R + L + +L+ ++++F++A++ N
Sbjct: 215 DRFRLLIVDSVTSLFRVDFSGRGELSERQQKLGKMMNRLIKISEEFNVAVVITN 268
>gi|4510403|gb|AAD21490.1| putative RAD51B-like DNA repair protein [Arabidopsis thaliana]
Length = 353
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 26 SICSASSSDISRGTQTAWDMLQEEQESLA-RITTSCADLDNILGGGIGCREVTEIGGVPG 84
S S ++S + + + + E E L+ + T LD+ L GGI +TE+ G PG
Sbjct: 54 SFISEATSPPCQSVSSLFFFKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPG 113
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
IGK+Q ++LA++ PV +GGL G+ IYI
Sbjct: 114 IGKSQFCMKLALSASFPVAYGGLDGRVIYI 143
>gi|296191896|ref|XP_002743822.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
1 [Callithrix jacchus]
Length = 339
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 68 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 126
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P GGK I+I F + AV++
Sbjct: 127 FRTGKTQLSHTLCVTAQLPGAGDYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 186
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 187 VLYARAYTSEHQMELLDYVAAKFHEEPGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 246
Query: 169 GIALKLMNLAKKFSLALLEPNLAT 192
+ +L +++++++A+ N T
Sbjct: 247 QMLSRLQKISEEYNVAVFVTNQMT 270
>gi|449272326|gb|EMC82304.1| DNA repair protein RAD51 like protein 1, partial [Columba livia]
Length = 338
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 71 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITELFGEFR 129
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQL LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 130 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 189
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +LA R L+
Sbjct: 190 YARGFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELAARQMHLARFLR 249
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 250 MLLRLADEFGVAVVITN 266
>gi|397638534|gb|EJK73108.1| hypothetical protein THAOC_05289, partial [Thalassiosira oceanica]
Length = 385
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+I + LD +LGGG+ E+TEI G PG GKTQL +QL V+ ++P ++GG+ G + I
Sbjct: 89 QIVSFSQSLDVLLGGGVALAELTEIVGRPGSGKTQLTMQLCVDARLPSKYGGVEGSVVVI 148
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 124 QSAVINYLDKFVSEHKD----VKVVIIDSIAFHFR--------HGFVDLALRTRVLSGIA 171
Q++ + L KF+ + ++ VK+V+IDS+AFH+R G + T L+ +A
Sbjct: 226 QTSTLYSLPKFLLKQEEAGIPVKLVVIDSLAFHYRVASSAAAGSGQSNSLSTTHNLTRMA 285
Query: 172 LKLMNLAKKFSLALLEPNLATT 193
L ++A +F LA++ N TT
Sbjct: 286 AFLTDMANEFDLAVVAINHLTT 307
>gi|442535548|gb|AGC52847.1| XRCC3, partial [Hypsibius dujardini]
Length = 374
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R+T C LD + GGI +TE G G KTQ + LA+ Q+PV GGLGG+ +Y+
Sbjct: 110 RLTFGCPLLDKLFRGGIVVDHLTEFAGAAGTAKTQTCLFLALRAQLPVLSGGLGGEVLYL 169
Query: 115 -----------------------------GKCLGFYTEQSAVINYLDKFVS-------EH 138
+ E ++ ++ F+S
Sbjct: 170 CTETVPIRRLRQMTDEMVRNLTAAKSEVTPSMDRIFIENLVTLDEVEHFLSGRVHDLLTR 229
Query: 139 KDVKVVIIDSIAFHFRHG---FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
+K+VI+DS+A FR+ V+ R+ L + + L L K+++AL+ N ATT
Sbjct: 230 LPIKLVIVDSMASVFRYQEEEKVNSMERSARLQRMTVILRRLQAKYNVALICTNQATTMI 289
Query: 196 LAESCLTCLRDSGSRKAVAAAAAQLGFV 223
+ L D R A A + FV
Sbjct: 290 DDAASSDTLGDGVDRTAPALGLSWSNFV 317
>gi|399949905|gb|AFP65561.1| DNA repair protein Rad51 [Chroomonas mesostigmatica CCMP1168]
Length = 331
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++ LA +TT +LD ILGGGI +TE+ G GKTQL ++V+ Q+ E GG G
Sbjct: 88 RQDLAHLTTGSRNLDKILGGGIETGSITELFGEFRTGKTQLCHNISVSCQLSFEQGGGEG 147
Query: 110 KAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
+A+YI F E+ +++ ++F +DV +D+IAF
Sbjct: 148 RALYIDTEGTFRPER--IVSIAERFKLNGQDV----LDNIAF 183
>gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum SRZ2]
Length = 354
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 58/246 (23%)
Query: 1 MEVSKLP---ISATQRGKLISAGYTSLSSIC-------------SASSSD---------I 35
+ VSKL IS++ KL AGY ++ SI S + +D +
Sbjct: 23 LPVSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKSLLLVKGISEAKADKILAEAAKLV 82
Query: 36 SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
G TA + E L ITT +LD ILGGG+ +TE+ G GK+QL LA
Sbjct: 83 PMGFTTATEFHARRNE-LISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLA 141
Query: 96 VNVQIPVEFGGLGGKAIYI--------------GKCLGFYTEQS-AVINYLDKFVSEHK- 139
V Q+PV+ GG GK +YI + G E+ + Y + ++H+
Sbjct: 142 VTCQLPVDMGGGEGKCLYIDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQL 201
Query: 140 -------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
++I+DS+ +R F +L+ R L+ LM LA +F +
Sbjct: 202 QLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGV 261
Query: 184 ALLEPN 189
A++ N
Sbjct: 262 AVVITN 267
>gi|281201100|gb|EFA75314.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 993
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S R++T LD L GGI +TEI G G GKTQL IQL + Q+P GG+ G A
Sbjct: 601 SKIRLSTGSNVLDRHLQGGIMPSGITEIVGESGCGKTQLAIQLCIQAQLPFSLGGMEGGA 660
Query: 112 IYI 114
+YI
Sbjct: 661 VYI 663
>gi|430812109|emb|CCJ30445.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISR---GTQTAWDMLQE--------------EQESLAR-- 55
KL +AGY ++ SI A+ ++S+ + D L+E E S R
Sbjct: 38 KLKTAGYCTVMSIQMATRRNLSKIKGFSDAKVDKLKEIIQKLCPPPFQTAMEVSSFRRRV 97
Query: 56 --ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
I+T D +LGGGI +TE+ G GKTQ+ + V Q+P E GG GKA Y
Sbjct: 98 NYISTGSKQFDAMLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPREMGGAEGKAAY 157
Query: 114 --------------IGKCLGFYTEQSA----------------VINYLDKFVSEHKDVKV 143
I G EQ+ +IN + SE ++
Sbjct: 158 LDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRL 217
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DSI FR G +L+ R + L+ + +L +A+++++A+ N
Sbjct: 218 LIVDSIMALFRVDYSGRGELSERQQKLNVMLSRLNRIAEEYNIAVFLTN 266
>gi|345561224|gb|EGX44320.1| hypothetical protein AOL_s00193g48 [Arthrobotrys oligospora ATCC
24927]
Length = 343
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
++++ + RI+T +LD ILGGG ++E+ G GKTQ+G L V Q+P + GG
Sbjct: 93 QQRKRVIRISTGSKNLDAILGGGFTTMSISEVFGEFRCGKTQMGHTLCVTCQLPKDMGGA 152
Query: 108 GGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHK------------- 139
GKA Y+ F ++ I+ Y SE +
Sbjct: 153 AGKAAYVDTEGTFRPDRIRAISERFGVDGDACLENILYARAVNSEVQMELIQKLAEPFAS 212
Query: 140 -DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++++DSI FR G +L+ R + L + +L +A++F++A+ N
Sbjct: 213 GEYRLLVVDSIMACFRVDYSGRGELSERQQKLGQMLARLTTMAEEFNIAVYMTN 266
>gi|30578205|gb|AAP35099.1|AF485820_1 DMC1 [Entamoeba histolytica]
Length = 334
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + ++ +ITT + D +LGGGI VTE+ G GKTQL LAV Q+P G
Sbjct: 89 ERRANVIKITTGSSQFDQLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGG 148
Query: 108 GGKAIYIGKCLGFYTE------------QSAVINYL---DKFVSEHK------------- 139
GK YI F E Q+AV++ + + E +
Sbjct: 149 NGKVAYIDTEGTFRPERIAQIAERFGVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAE 208
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++IIDS+ FR F +L+ R + L + KL+ ++++F++A++ N
Sbjct: 209 DHFRMLIIDSVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITN 262
>gi|440492453|gb|ELQ75018.1| DNA repair protein RAD51/RHP55 [Trachipleistophora hominis]
Length = 343
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
I G TA Q+ + ++ ITT +LD +L GGI +TEI G GKTQL L
Sbjct: 85 IPMGFSTATSYFQK-RNNIVFITTGSQELDKLLKGGIETGSITEIFGEFRTGKTQLCHTL 143
Query: 95 AVNVQIPVEFGGLGGKAIYIG--------KCL------GFYTEQS-AVINYLDKFVSEHK 139
AV Q+ E GG GKA+YI +C+ G ++Q I+Y + S+H+
Sbjct: 144 AVTCQLDRENGGGSGKALYIDTEGTFRPERCIAVAQRFGLDSDQVLENISYARAYNSDHQ 203
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
+ ++I+DS +R F +L R L+ L+ LA +FS
Sbjct: 204 SQLLVQAAAMLSESNYSLIIVDSAMALYRTDFSGRGELGARQIHLARFLRMLLRLADEFS 263
Query: 183 LALLEPN 189
+A++ N
Sbjct: 264 VAVVITN 270
>gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 67/253 (26%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GT 39
++ LP + + KL+ AGY I +A+ +++ G
Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGF 64
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN+Q
Sbjct: 65 KSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123
Query: 100 IP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN------- 129
P V G + KA+YI F E Q+ + N
Sbjct: 124 NPEFLFYDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAY 183
Query: 130 ----------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 184 NSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNK 243
Query: 177 LAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 244 LADLFNCVVLVTN 256
>gi|189197611|ref|XP_001935143.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187981091|gb|EDU47717.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 341
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 37/185 (20%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G QTA ++ Q + + +I+T LD +LGGG ++E+ G GKTQL ++V
Sbjct: 87 GFQTAHELGQHRKRVI-KISTGSKALDAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVI 145
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK--- 139
Q+P + GG GK YIG F E+ A I Y SEH+
Sbjct: 146 TQLPKDMGGAEGKVAYIGT---FRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMEL 202
Query: 140 -----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK-KFSLA 184
+ +++IIDSI FR + +L R + L+ KL ++A+ +F++A
Sbjct: 203 LNKVAEFFVSNEYRLLIIDSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEAEFNVA 262
Query: 185 LLEPN 189
+L N
Sbjct: 263 VLLTN 267
>gi|67606014|ref|XP_666724.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
hominis TU502]
gi|54657771|gb|EAL36494.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
hominis]
Length = 342
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 33/193 (17%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
+A D S Q+ +++ Q L RITT D +L GG +TEI G GKT
Sbjct: 79 AAQKLDQSSSFQSGSEVMSRRQNIL-RITTGSEQFDKMLMGGFESMCITEIFGENRCGKT 137
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----------QSAV----INYLDK 133
Q+ L V Q+P+E G GK +I F E Q V I Y
Sbjct: 138 QICHTLCVAAQLPLEMNGGNGKVCFIDTEGTFRPERIVKIAERFGVQGDVALDNIMYARA 197
Query: 134 FVSEH--------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+ EH + ++I+DSI FR F +LA R ++L+ KL
Sbjct: 198 YTHEHLNQLISAAAGKMIEEKFALLIVDSIIALFRTEFSGRGELAERQQILNKTLSKLNK 257
Query: 177 LAKKFSLALLEPN 189
LA +F++A++ N
Sbjct: 258 LADQFNIAIVMTN 270
>gi|13878668|sp|O73948.1|RADA_METVO RecName: Full=DNA repair and recombination protein RadA
gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS]
Length = 322
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 67/253 (26%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GT 39
++ LP + + KL+ AGY I +A+ +++ G
Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGF 64
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN+Q
Sbjct: 65 KSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123
Query: 100 IP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN------- 129
P V G + KA+YI F E Q+ + N
Sbjct: 124 NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAY 183
Query: 130 ----------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 184 NSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNK 243
Query: 177 LAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 244 LADLFNCVVLVTN 256
>gi|66362764|ref|XP_628348.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
parvum Iowa II]
gi|46229395|gb|EAK90213.1| meiotic recombination protein DMC1-like protein [Cryptosporidium
parvum Iowa II]
Length = 342
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 33/193 (17%)
Query: 29 SASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
+A D S Q+ +++ Q L RITT D +L GG +TEI G GKT
Sbjct: 79 AAQKLDQSSSFQSGSEVMSRRQNIL-RITTGSEQFDKMLMGGFESMCITEIFGENRCGKT 137
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----------QSAV----INYLDK 133
Q+ L V Q+P+E G GK +I F E Q V I Y
Sbjct: 138 QICHTLCVAAQLPLEMNGGNGKVCFIDTEGTFRPERIVKIAERFGVQGDVALDNIMYARA 197
Query: 134 FVSEH--------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+ EH + ++I+DSI FR F +LA R ++L+ KL
Sbjct: 198 YTHEHLNQLISAAAGKMIEEKFALLIVDSIIALFRTEFSGRGELAERQQILNKTLSKLNK 257
Query: 177 LAKKFSLALLEPN 189
LA +F++A++ N
Sbjct: 258 LADQFNIAIVMTN 270
>gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 67/253 (26%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GT 39
++ LP + + KL+ AGY I +A+ +++ G
Sbjct: 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGF 64
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN+Q
Sbjct: 65 KSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123
Query: 100 IP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN------- 129
P V G + KA+YI F E Q+ + N
Sbjct: 124 NPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAY 183
Query: 130 ----------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 184 NSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNK 243
Query: 177 LAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 244 LADLFNCVVLVTN 256
>gi|330919603|ref|XP_003298683.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
gi|311328005|gb|EFQ93221.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
+ + +S + G TA +M E L ITT LD +L GGI +TEI G G
Sbjct: 72 LLAEASKIVPMGFTTATEMHSRRSE-LISITTGSKQLDTLLAGGIETGSITEIFGEFRTG 130
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLG----FYTEQSAVIN---YL 131
K+QL LAV Q+P + GG GK IYI +CL F V++ Y
Sbjct: 131 KSQLCHTLAVTCQLPFDMGGGEGKCIYIDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYA 190
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++++DS +R FV +L+ R L+ L
Sbjct: 191 RAYNSDHQLELLNQAAQMMTETRFSLLVVDSAMALYRTDFVGRGELSARQTHLAKFMRTL 250
Query: 175 MNLAKKFSLALLEPN 189
LA +F +A++ N
Sbjct: 251 QRLADEFGIAVIITN 265
>gi|390361391|ref|XP_791258.3| PREDICTED: uncharacterized protein LOC586381 [Strongylocentrotus
purpuratus]
Length = 1269
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RITT +LD +LGGGI +TE G GKTQL L V Q+P G GGK I+I
Sbjct: 101 RITTGSTELDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVCTQLPGSNGYPGGKVIFI 160
Query: 115 GK------------CLGFYTEQSAVIN---YLDKFVSEHK----------------DVKV 143
F + A+++ Y + SEH+ K+
Sbjct: 161 DTENTFRPDRLRDIADRFNLDHGAMLDNVLYARAYTSEHQFELLDYAAGKFHEEPGVFKL 220
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
+IIDSI FR F +LA R + L+ + KL ++++ SL
Sbjct: 221 LIIDSIMALFRVDFTGRGELADRQQKLAQMLSKLQKISEESSL 263
>gi|325190521|emb|CCA25020.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
Length = 342
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
+ AS ++ G TA D+L ++ L ++T + LD +L GG +TE+ G G
Sbjct: 78 MIKASREMVNIGFTTAADVLMSRKD-LITLSTGSSALDELLKGGFETGSITELFGEFRTG 136
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK---- 133
KTQL QL V Q+PV+ GG GKA++I F ++ I + LD
Sbjct: 137 KTQLCHQLCVTCQLPVDRGGGEGKALFIDTEGTFRPQRLVAIAERYGLDGDSVLDNVAFA 196
Query: 134 --FVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ SEH+ +VI+DS FR F +LA R + L+ L
Sbjct: 197 RAYNSEHQMQLLIQASAMMAESRYALVIVDSATALFRTDFSGRGELAARQQELAKFLRAL 256
Query: 175 MNLAKKFSLALLEPNLAT 192
+A +F +A++ N T
Sbjct: 257 TKMADEFGVAVVITNQMT 274
>gi|125535754|gb|EAY82242.1| hypothetical protein OsI_37447 [Oryza sativa Indica Group]
Length = 348
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ IC A+ +S+G T D+L + ++S+ RITT LD +LGGGI +TE G
Sbjct: 77 VDKICEAAEKLLSQGFMTGSDLLIK-RKSVVRITTGSQALDELLGGGIETLCITEAFGEF 135
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKV 143
GKTQL L V+ QI IY + + + + ++ K E ++
Sbjct: 136 RSGKTQLAHTLCVSTQI-----------IY-ARAYTYEHQYNLLLGLAAKMAEE--PFRL 181
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DS+ FR F +LA R + L+ + +L +A++F++A+ N
Sbjct: 182 LIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITN 230
>gi|403342118|gb|EJY70369.1| hypothetical protein OXYTRI_08883 [Oxytricha trifallax]
Length = 397
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 52/183 (28%)
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--- 120
DN G E TEI G+ GKTQ+ QL +NVQIP E GG+ G+A+++ F
Sbjct: 119 DNFFDEIFGLGETTEICGLSATGKTQVCYQLCMNVQIPKELGGVDGEALFVDTHGDFAIE 178
Query: 121 --------------------------YTEQSAVINYLDK--------------FVSEHKD 140
Y E+ ++ L K F ++ +D
Sbjct: 179 RIKEMAKSLRQQVLKKIEKEPNLSKKYKEEFSLDRILQKIRYVRLLDEAQQLLFHNQLED 238
Query: 141 ---------VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191
VK+++ D+ + HFR + + RV+S + L+ LA++F + ++ N
Sbjct: 239 KLLNSNLSKVKLIVFDTFSEHFRLAELSYNDKKRVISQALMNLLELAQRFQICVVFINNM 298
Query: 192 TTA 194
TA
Sbjct: 299 KTA 301
>gi|403345476|gb|EJY72106.1| hypothetical protein OXYTRI_06896 [Oxytricha trifallax]
Length = 339
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+ ++ G QTA E+++S+ +TT + LD +LGGGI +TEI G
Sbjct: 71 VDKIVEAAQKIVNLGFQTASTYF-EKRQSMVHLTTGSSSLDQLLGGGIETGSITEIFGEF 129
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKV 143
GKTQ+ L V Q+P+ GG G A+Y+ F E+ +I +F + + V
Sbjct: 130 RTGKTQICHTLCVTCQLPISKGGGEGMAMYVDTEGTFRPER--LIPVAKRFGLDEQQV-- 185
Query: 144 VIIDSIAFHFRH 155
+D++A+ H
Sbjct: 186 --LDNVAYARAH 195
>gi|393907809|gb|EFO15910.2| meiotic recombination protein DMC1/LIM15 [Loa loa]
Length = 315
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ RI+T +LD +LGGGI + +TE+ G GKTQL L V QI E
Sbjct: 67 ERRKLCYRISTGSRELDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNF 126
Query: 108 -GGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHKD----------- 140
GGK IYI F ++ IN Y + S+H+
Sbjct: 127 KGGKVIYIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFH 186
Query: 141 -----VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++++DSI FR G +LA R + L+ + +L +A+++++A+ N T
Sbjct: 187 EELGVFKLLVVDSIMALFRVDYSGRGELAERQQRLAQMLSRLQKIAEEYNVAVFITNQMT 246
>gi|345100717|pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 66/240 (27%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL+ AGY I +A+ +++ G ++ D+L++ + +
Sbjct: 15 KLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQ-RST 73
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP---------VE 103
+ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN+Q P V
Sbjct: 74 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVS 133
Query: 104 FGGLG-GKAIYIGKCLGFYTE-------------QSAVIN-----------------YLD 132
G + KA+YI F E Q+ + N ++
Sbjct: 134 KGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIE 193
Query: 133 KFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ E ++K+V+IDS+ FR+ + LA R + L L LA F+ +L N
Sbjct: 194 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 253
>gi|350408492|ref|XP_003488421.1| PREDICTED: DNA repair protein XRCC3-like [Bombus impatiens]
Length = 254
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
+E+E +TT C D +L GGI R +T+I G GKTQL +QL + VQ+P GG
Sbjct: 12 KEREKF--LTTGCPKFDTLLQGGITTRGITQIYGAASTGKTQLALQLCLTVQLPTTEGGF 69
Query: 108 GGKAIYI 114
A+YI
Sbjct: 70 AAGAVYI 76
>gi|296215965|ref|XP_002754356.1| PREDICTED: DNA repair protein XRCC3 [Callithrix jacchus]
Length = 346
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q++++ A R++ C LD +L GG+ +TE+ G GKTQL +QL +
Sbjct: 64 TALHLHQQKEQFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLESGAVYICTEDAFPHKRLQQLMAHQPRLRTDVPGELLQRLPSGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDLA--LRTRVLSGIALKLM 175
+A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 AADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASVPRARHLQSLGATLR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSTFQSPVLCINQVTEA 262
>gi|429965461|gb|ELA47458.1| DNA repair protein RAD51 [Vavraia culicis 'floridensis']
Length = 343
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
I G TA Q+ + ++ ITT +LD +L GGI +TEI G GKTQL L
Sbjct: 85 IPMGFSTATSYFQK-RNNIVFITTGSQELDKLLKGGIETGSITEIFGEFRTGKTQLCHTL 143
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK 139
AV Q+ E GG GKA+YI F E+ I+Y + S+H+
Sbjct: 144 AVTCQLDRESGGGSGKALYIDTEGTFRPERCIAVAQRFGLDPDQVLENISYARAYNSDHQ 203
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
+ ++I+DS +R F +L R L+ L+ LA +FS
Sbjct: 204 SQLLVQAAAMLSESNYSLIIVDSAMALYRTDFSGRGELGARQIHLARFLRMLLRLADEFS 263
Query: 183 LALLEPN 189
+A++ N
Sbjct: 264 VAVVITN 270
>gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
Length = 1641
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
S + + +S + G TA +M Q E L ITT LD +L GGI +TEI G
Sbjct: 80 SKLLAEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSITEIFGEFR 138
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLG----FYTEQSAVIN--- 129
GK+Q+ LAV Q+P + GG GK +YI +CL F V++
Sbjct: 139 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLAVANRFGLSGEEVLDNVA 198
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 199 YARAYNSDHQLELLNQAAQMMTETRFSLLIVDSATSLYRTDFAGRGELSSRQTHLAKFMR 258
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 259 TLQRLADEFGIAVVITN 275
>gi|383863171|ref|XP_003707056.1| PREDICTED: DNA repair protein XRCC3-like [Megachile rotundata]
Length = 257
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TT C+ LD +L GGI R +T+I G GKTQL +QL + VQ+P GG A+YI
Sbjct: 21 LTTGCSKLDALLEGGITTRGITQIYGAASTGKTQLALQLCLTVQLPEVKGGFAAGAVYI 79
>gi|71018413|ref|XP_759437.1| DNA repair protein RAD51 [Ustilago maydis 521]
gi|2500102|sp|Q99133.1|RAD51_USTMA RecName: Full=DNA repair protein RAD51
gi|1480734|gb|AAC61878.1| Rad51 [Ustilago maydis]
gi|46099044|gb|EAK84277.1| RA51_USTMA DNA repair protein RAD51 [Ustilago maydis 521]
Length = 339
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 58/246 (23%)
Query: 1 MEVSKLP---ISATQRGKLISAGYTSLSSIC-------------SASSSD---------I 35
+ VSKL IS++ KL +GY ++ SI S + +D +
Sbjct: 23 LPVSKLEEFGISSSDCKKLAESGYNTVESIAFTPKKQLLLVKGVSEAKADKILAEAARLV 82
Query: 36 SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
G TA + E L ITT +LD ILGGG+ +TE+ G GK+QL LA
Sbjct: 83 PMGFTTATEFHARRNE-LISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLA 141
Query: 96 VNVQIPVEFGGLGGKAIYIGKCLGFY-TEQSAV--------------INYLDKFVSEHK- 139
V Q+PV+ GG GK +YI F T AV + Y + ++H+
Sbjct: 142 VTCQLPVDMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQL 201
Query: 140 -------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
++I+DS+ +R F +L+ R L+ LM LA +F +
Sbjct: 202 QLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGV 261
Query: 184 ALLEPN 189
A++ N
Sbjct: 262 AVVITN 267
>gi|324516267|gb|ADY46476.1| Meiotic recombination protein DMC1/LIM15 [Ascaris suum]
Length = 348
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ RI+T +LD +LGGGI + +TE+ G GKTQL L Q+P
Sbjct: 100 ERRKMCFRISTGSRELDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCATCQMPNAATSF 159
Query: 108 -GGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHK------------ 139
GGK I+I C F +Q A+++ Y + S+H+
Sbjct: 160 KGGKVIFIDTENTFRPDRLRQICDRFNMDQEAMLDNVLYARAYTSDHQVELLDYVAAKFH 219
Query: 140 ----DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++I+DS+ FR G +LA R + L+ + +L +A+++++A+ N T
Sbjct: 220 EELGVFKLLIVDSVMALFRVDYSGRGELAERQQKLAQMMSRLQKIAEEYNIAVFITNQMT 279
>gi|384494865|gb|EIE85356.1| DNA repair protein RAD51 [Rhizopus delemar RA 99-880]
Length = 333
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 33/187 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+S G TA ++ + QE + ITT +LD +LGGGI +TEI G GK+QL L
Sbjct: 75 VSLGFTTATEVHKRRQEVIT-ITTGSKELDRLLGGGIETGSITEIFGEFRTGKSQLCHML 133
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK 139
+V Q+P++ GG GK ++I F Q + N Y + ++H+
Sbjct: 134 SVTAQLPLDMGGAQGKCLFIDTENTFRPNRILSIAQRYSLDGQDTLDNIAYARAYNTDHQ 193
Query: 140 DV--------------KVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
V+I+DS +R + +LA R L+ +L LA +F
Sbjct: 194 TTLLIQAAAMMAETRFAVLIVDSAMALYRTDYAGRGELAARQIHLAQFLRQLQRLADEFG 253
Query: 183 LALLEPN 189
+A++ N
Sbjct: 254 VAVVITN 260
>gi|395509187|ref|XP_003758884.1| PREDICTED: DNA repair protein RAD51 homolog 2-like, partial
[Sarcophilus harrisii]
Length = 253
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+ M E+ L A + T+ L
Sbjct: 31 LCLSPLELMKMTGQSYQGVRELLYTVSRACAPQMQTAYGMKFEKSSDLSSAFLATTLTSL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TE+ G G GKTQ + ++V +P GGL G IYI F E
Sbjct: 91 DEALHGGVPCGSLTEVTGPSGCGKTQFCMMMSVLTTLPTVMGGLEGSVIYIDTESAFSAE 150
Query: 124 Q 124
+
Sbjct: 151 R 151
>gi|346972548|gb|EGY16000.1| DNA-repair protein XRCC3 [Verticillium dahliae VdLs.17]
Length = 459
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 53/208 (25%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+S + +AS S + R L+E I+T DLD LGGGI VTEI G
Sbjct: 69 VSRVPAASPSPLKR-------TLEELTNRPLLISTLDDDLDRALGGGIPTGYVTEIAGES 121
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------------- 122
G+GKTQ + L + VQ+P GLG +A+YI T
Sbjct: 122 GVGKTQFLLSLMLAVQLPSPH-GLGRRALYISTEAPLSTTRLRQILASNSLLSDLSEEER 180
Query: 123 ---------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF---------V 158
Q ++ + E ++ ++++DS+A ++R F
Sbjct: 181 PTTDAIIVGSVADLESQEHILRFQVPVEVERSNIGLLVLDSVAANYRAEFERGVTKNHGS 240
Query: 159 DLALRTRVLSGIALKLMNLAKKFSLALL 186
++ R+ L + L +LA+K++LA++
Sbjct: 241 NMGARSNELIRLGALLRDLAQKYNLAVV 268
>gi|406862778|gb|EKD15827.1| DNA repair protein rhp51 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 350
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GGI VTEI G
Sbjct: 75 TKILTEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSVTEIFGEFR 133
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVA 193
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R FV +L+ R L+
Sbjct: 194 YARAYNSDHQLQLLNQASAMMCETRFSLLIVDSATSLYRTDFVGRGELSSRQTHLAKFMR 253
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 TLQRLADEFGIAVVITN 270
>gi|254579509|ref|XP_002495740.1| ZYRO0C01958p [Zygosaccharomyces rouxii]
gi|238938631|emb|CAR26807.1| ZYRO0C01958p [Zygosaccharomyces rouxii]
Length = 332
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T LD+ILGGGI +TE+ G GKTQ+ L + Q+ E GG GK YI
Sbjct: 94 ISTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCITAQLSKELGGGEGKVAYID 153
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ ++VI+
Sbjct: 154 TEGTFRPERIKQIAERYELDPEVCLENVSYARALNSEHQMELVEQLGGELSTGQYRLVIV 213
Query: 147 DSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR G +L+ R + L+ +L L+++F++A+ N
Sbjct: 214 DSIMANFRVDYSGRGELSERQQRLNQHLFRLNRLSEEFNVAVFMTN 259
>gi|357616274|gb|EHJ70106.1| Rad51-like protein [Danaus plexippus]
Length = 338
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I S +S + G TA + Q+ E + ++TT +LD +LGGGI +TEI G G
Sbjct: 73 ILSEASKLVPMGFTTATEFHQKRAE-IIQLTTGSKELDRLLGGGIETGSITEIFGEFRTG 131
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
KTQL LAV Q+P+E G GK +YI
Sbjct: 132 KTQLCHTLAVTCQLPIEQSGGEGKCMYI 159
>gi|302413137|ref|XP_003004401.1| DNA repair protein RAD57 [Verticillium albo-atrum VaMs.102]
gi|261356977|gb|EEY19405.1| DNA repair protein RAD57 [Verticillium albo-atrum VaMs.102]
Length = 459
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 53/208 (25%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+S + +AS S + R L+E I+T DLD LGGGI VTEI G
Sbjct: 69 VSRVPAASPSPLKR-------TLEELTNRPLVISTLDDDLDRALGGGIPTGYVTEIAGES 121
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------------- 122
G+GKTQ + L + VQ+P GLG +A+YI T
Sbjct: 122 GVGKTQFLLSLMLAVQLPSPH-GLGRRALYISTEAPLSTTRLRQILASNPLLSGLSEEER 180
Query: 123 ---------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF---------V 158
Q ++ + E ++ ++++DS+A ++R F
Sbjct: 181 PTTDAIIVGSVADLESQEHILRFQVPVEVERSNIGLLVLDSVAANYRAEFERGVTKNHGS 240
Query: 159 DLALRTRVLSGIALKLMNLAKKFSLALL 186
++ R+ L + L +LA+K++LA++
Sbjct: 241 NMGARSNELIRLGALLRDLAQKYNLAVV 268
>gi|50293765|ref|XP_449294.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528607|emb|CAG62268.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++ + I+T LD++LGGGI +TE+ G GKTQ+ L V Q+P GG G
Sbjct: 90 RQKVISISTGSKQLDSVLGGGIMTMSITEVFGEFRCGKTQMSHTLCVTAQLPKSMGGGEG 149
Query: 110 KAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK--------------D 140
K +I F E+ I Y SEH+
Sbjct: 150 KVAFIDTEGTFRPERIKQIAERYDLDPDSCLENITYARALNSEHQMELVEQLGEELSSGS 209
Query: 141 VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DSI +FR + +L R + L+ KL LA++F+LA+ N
Sbjct: 210 YTLIIVDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNLAVFMTN 261
>gi|347968908|ref|XP_003436320.1| AGAP013412-PA [Anopheles gambiae str. PEST]
gi|333467786|gb|EGK96693.1| AGAP013412-PA [Anopheles gambiae str. PEST]
Length = 339
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I ++ + G TA + Q+ E + ++TT +LD +LGGGI +TEI G G
Sbjct: 74 ILQEATKHVPMGFTTATEYHQKRSE-IIQLTTGSKELDKLLGGGIETGSITEIFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+PV G GK +YI F E+ + V++ Y
Sbjct: 133 KTQLCHTLAVTCQLPVSQNGGEGKCLYIDTEGTFRPERLLATAERYKLVGADVLDNVAYA 192
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ ++H+ ++I+DS +R + +LA R L+ L
Sbjct: 193 RAYNTDHQMHLLMVASAMMAESRYALIIVDSATSLYRTDYSGRGELAARQTHLAKFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A+L N
Sbjct: 253 LRLADEFGVAVLITN 267
>gi|303279168|ref|XP_003058877.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
gi|226460037|gb|EEH57332.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545]
Length = 411
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T M+Q +ES I+T + LD +LGGG +TEI G GKTQL LAV Q+
Sbjct: 95 TTASMVQAVRESTIMISTGSSKLDELLGGGFESGSLTEIYGEFRTGKTQLCHTLAVTCQL 154
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
P+ GG GKA+YI F ++ +I ++F + ++D++A+ H
Sbjct: 155 PLAQGGAEGKAMYIDTEGTFRPQR--LIAIAERFGMD----SAAVLDNVAYAKAH 203
>gi|331242297|ref|XP_003333795.1| hypothetical protein PGTG_15555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312785|gb|EFP89376.1| hypothetical protein PGTG_15555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 514
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 62/137 (45%), Gaps = 28/137 (20%)
Query: 21 YTSLSSICSASSSDIS----RGTQTAWDMLQEEQESLARITTSCADLDNILG---GGIGC 73
Y LS ICS S +S G++ + IT ADLD + G GGI
Sbjct: 66 YRRLSEICSPQVSTVSARLIEGSKQGF------------ITLGSADLDRVFGSPQGGIPT 113
Query: 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------- 124
+TEI G GKT L +QL++NVQ+P GGL G IY+ F T +
Sbjct: 114 GLLTEIAGESACGKTCLALQLSLNVQLPHSLGGLLGGCIYLCTESAFPTRRLHEMAAGLC 173
Query: 125 SAVINYLDKFVSEHKDV 141
+ V N LD E +++
Sbjct: 174 ARVKNILDSLDPETQEL 190
>gi|440639447|gb|ELR09366.1| DNA repair protein rhp51 [Geomyces destructans 20631-21]
Length = 349
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GGI VTEI G
Sbjct: 74 TKILTEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSVTEIFGEFR 132
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVA 192
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R FV +LA R L
Sbjct: 193 YARAYNSDHQLQLLQLASQMMCETRFSLLIVDSATSLYRTDFVGRGELASRQTHLGKFMR 252
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 253 ALQRLADEFGIAVVITN 269
>gi|410080818|ref|XP_003957989.1| hypothetical protein KAFR_0F02570 [Kazachstania africana CBS 2517]
gi|372464576|emb|CCF58854.1| hypothetical protein KAFR_0F02570 [Kazachstania africana CBS 2517]
Length = 465
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 39/173 (22%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
ITT +D LGGGI + +TE+ G GK+Q +QL++ VQ+P + GG K +YI
Sbjct: 87 ITTGDISIDEALGGGIFTKCITEVFGESSTGKSQFLMQLSLAVQMPKDCGGAEAKCVYIT 146
Query: 116 ---------------------------------KCLGFYTEQSAVINYLDKFVSEHK-DV 141
C T++ + L + + K +
Sbjct: 147 TEGDLPTQRIQDMIESREEFKKSSISQSNIYTVSCNDLVTQEHILNVQLPILLEQSKGAI 206
Query: 142 KVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K+VIIDSI+ H R + F + +S +A L+ LA K++LA++ N
Sbjct: 207 KLVIIDSISHHMRVELESNSFKESQDNRYYVSRLAEALLKLANKYNLAVVVAN 259
>gi|311698172|gb|ADQ00380.1| Dmc1 [Pneumocystis carinii]
gi|311698174|gb|ADQ00381.1| Dmc1 [Pneumocystis carinii]
Length = 336
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 58/253 (22%)
Query: 15 KLISAGYTSLSSICSASSSDISR---GTQTAWDMLQE--------------EQESLAR-- 55
KL S+GY ++ SI A+ ++S+ ++ + L+E E S R
Sbjct: 37 KLKSSGYCTVMSIQMATRRNLSKIKGFSEAKVEKLKEIAQKLCPPPFQTAMEVSSFRRRV 96
Query: 56 --ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
I+T D +LGGGI +TE+ G GKTQ+ + V Q+P E GG GKA Y
Sbjct: 97 NYISTGSKQFDAMLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKEMGGAEGKAAY 156
Query: 114 --------------IGKCLGFYTEQSA----------------VINYLDKFVSEHKDVKV 143
I G EQ+ +IN + SE ++
Sbjct: 157 LDTEGTFRPDRIKSIAARFGVDAEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRL 216
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC 200
+I+DSI FR G +L+ R + L+ + +L +A+++++A+ N A+
Sbjct: 217 LIVDSIMALFRVDYSGRGELSERQQKLNIMLSRLTRIAEEYNIAVFLTNQVQ----ADPG 272
Query: 201 LTCLRDSGSRKAV 213
T + S RK V
Sbjct: 273 ATLMFASNDRKPV 285
>gi|380027258|ref|XP_003697346.1| PREDICTED: DNA repair protein XRCC3-like [Apis florea]
Length = 254
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TT C D +L GGI R +T+I G GKTQL +QL + VQ+P GGL AIYI
Sbjct: 18 LTTGCLKFDTLLQGGITNRGITQIYGAASTGKTQLALQLCLTVQLPKTDGGLAAGAIYI 76
>gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis
carolinensis]
Length = 339
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 133 KTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 192
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L+ L
Sbjct: 193 RAFNTDHQTQLLYQASAMMTESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 253 LRLADEFGVAVVITN 267
>gi|363751170|ref|XP_003645802.1| hypothetical protein Ecym_3507 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889436|gb|AET38985.1| Hypothetical protein Ecym_3507 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T LD+ILGGG+ +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 96 ISTGSKQLDSILGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPRELGGGEGKVAYID 155
Query: 116 KCLGFYTEQSAVI---------------NYLDKFVSEHK--------------DVKVVII 146
F E+ I +Y SEH+ + +++I+
Sbjct: 156 TEGTFRPERIKQIAARYELDPDICLENVSYARALNSEHQMELVEQLGQQLSSGEYRLLIV 215
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L R + L+ +L +A+ +++A+ N
Sbjct: 216 DSIMANFRVDYCGRGELNERQQRLNQHLSRLNRIAEDYNVAVFMTN 261
>gi|345308874|ref|XP_001519391.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Ornithorhynchus anatinus]
Length = 296
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 34/180 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E+++ + +TT + D +LGGGI +TE G GKTQL L V Q+P G
Sbjct: 49 EKRKMVFHVTTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 108
Query: 108 GGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD------------ 140
GGK I+I F + AV++ Y + SEH+
Sbjct: 109 GGKIIFIDTENTFRPDRLRDIADRFNLDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHE 168
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
K++IIDSI FR F +LA R + L+ + +L +++++++A+ N T+
Sbjct: 169 EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTS 228
>gi|402471502|gb|EJW05219.1| DNA repair protein RAD51 [Edhazardia aedis USNM 41457]
Length = 333
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T+ +++E+ ITT ++LD +L GGI C +TEI G GK+QL LAV Q+
Sbjct: 80 TSAKEFHQKRENTVYITTGSSELDKLLNGGIECGSITEIFGEFRTGKSQLCHTLAVTCQL 139
Query: 101 PVEFGGLGGKAIYIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK------ 139
E GG GK ++I F TE Q+ + N Y + S+H+
Sbjct: 140 GFETGGGNGKCLFIDTEGTFRTERLVSIAQRYSLDPQTVLDNVAYARAYNSDHQSRLLIQ 199
Query: 140 --------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188
++I+DS +R F +L R L+ L+ LA +F +A++
Sbjct: 200 AAAMMSESHYSLMIVDSAMALYRTDFSGRGELGARQIHLARFLRMLLRLADEFGIAVVIT 259
Query: 189 N 189
N
Sbjct: 260 N 260
>gi|340383738|ref|XP_003390373.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Amphimedon queenslandica]
Length = 343
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 34/172 (19%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RI T +LD +LGGGI +TE+ G GKTQL L V Q+P + G GGK ++I
Sbjct: 103 RIATGSQELDKLLGGGIESMAITEVFGEFRTGKTQLSHTLCVTAQLPGKNGYSGGKVVFI 162
Query: 115 GK------------CLGFYTEQSAVIN---YLDKFVSEHKD----------------VKV 143
F + +A+++ Y + SEH+ K+
Sbjct: 163 DTENTFRPDRLREIADRFNLDHTAMLDNVLYARAYTSEHQMELLDCVAAKFHEEPGVFKL 222
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
+I+DSI FR F +LA R + L+ + +L +++++++ + N T
Sbjct: 223 LIVDSIMALFRVDFSGRGELADRQQKLAQMLSRLQKISEEYNVGVFVTNQMT 274
>gi|299753890|ref|XP_001833605.2| Rad51B protein [Coprinopsis cinerea okayama7#130]
gi|298410510|gb|EAU88150.2| Rad51B protein [Coprinopsis cinerea okayama7#130]
Length = 451
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 41/172 (23%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T A LD+ LGGGI V EI G GK+QL +QL++ VQ P E GG+ G A Y+
Sbjct: 61 LSTGDAYLDHALGGGIRTGMVWEIVGESAAGKSQLALQLSLFVQNPPELGGIHGAACYLT 120
Query: 116 KCLGFYTEQ---------------------------------SAVINYLDKFVSEHK--- 139
T + + ++N L F+ + +
Sbjct: 121 TSSKLPTSRLSQMLQSNENLSKDSCDLAHVHTIRVNTTPMLTNVLMNLLPNFIQQQQTTS 180
Query: 140 -DVKVVIIDSIAFHFRH----GFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
VK+++ID++A FR L R++ L+ +AL L LA + ++A++
Sbjct: 181 HPVKLLVIDALAELFRSTEKMSKTTLFDRSKELNQLALDLHALATRHNIAVV 232
>gi|255718721|ref|XP_002555641.1| KLTH0G14014p [Lachancea thermotolerans]
gi|238937025|emb|CAR25204.1| KLTH0G14014p [Lachancea thermotolerans CBS 6340]
Length = 333
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 53/241 (21%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSD-----------ISRGTQTAWDMLQ--- 47
E+ I+A+ KL SAG S++S+ S + + + + + A ++Q
Sbjct: 20 ELQNYGINASDLQKLKSAGVFSVNSVLSTTRRNLLKIKGLSEVKVEKVKEAAGKIIQVGF 79
Query: 48 -------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+ ++ + I+T LD++LGGG+ +TE+ G GKTQ+ L V Q+
Sbjct: 80 IPATIQADIRKRVFAISTGSKQLDSVLGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQL 139
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVI---------------NYLDKFVSEHK------ 139
P E GG GK YI F E+ I +Y SEH+
Sbjct: 140 PRELGGGEGKVAYIDTEGTFRPERIKQIAARYDLDPEACLENVSYARALNSEHQMELTEQ 199
Query: 140 --------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188
+ +++I+DSI +FR + +L R + L+ +L +++++++A+
Sbjct: 200 LGSELSSGEYRLLIVDSIMANFRVDYCGRGELNERQQKLNQHLSRLNRISEEYNIAVFMT 259
Query: 189 N 189
N
Sbjct: 260 N 260
>gi|224050703|ref|XP_002196004.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Taeniopygia guttata]
Length = 339
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITELFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 133 KTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 192
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L+ L
Sbjct: 193 RGFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 253 LRLADEFGVAVVITN 267
>gi|403416182|emb|CCM02882.1| predicted protein [Fibroporia radiculosa]
Length = 492
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116
TT + LD +L GGI + EI G GKTQL +QL+++VQIP GGL G A Y+
Sbjct: 79 TTGDSCLDEVLDGGIRTGMLWEIVGESAAGKTQLALQLSLSVQIPHTLGGLSGTACYLTT 138
Query: 117 CLGFYTEQ-------------------------------------SAVINYLDKFVSEH- 138
T + + + N +D E
Sbjct: 139 STALPTSRLTEIMERHPLLSRENCSLSAIHTIKTPEIPILLHVLSTRLPNLVDSLAKEQN 198
Query: 139 -KDVKVVIIDSIA--FHFRHGFVD--LALRTRVLSGIALKLMNLAKKFSLALL 186
VK+++ID++A FH L R++ L+ I+ L LA K+ +A+L
Sbjct: 199 PNPVKLLVIDALAELFHMHDKTTADVLGQRSKHLAEISTLLHTLASKYRIAVL 251
>gi|452825485|gb|EME32481.1| DNA repair protein isoform 2 [Galdieria sulphuraria]
Length = 312
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
++E +++L ITT + LD +LGGGI +TE+ G GKTQL L V Q+P
Sbjct: 64 VRERRKNLIHITTGSSALDELLGGGIETSSITEVFGEFRSGKTQLAHTLCVTAQLPKSVN 123
Query: 106 GLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK----------- 139
G G+ YI F E+ I LD + SEH+
Sbjct: 124 GAEGRVAYIDTENCFRPERIVEIAERFELDPEEVLDNILVARAYTSEHQIELLVHIAAKM 183
Query: 140 ---DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS FR G +L+ R + L+ +L+ L+++F+LA+ N
Sbjct: 184 VEETFGLLIVDSATALFRVDYSGRGELSERQQKLNRFMSQLLKLSEQFNLAVFITN 239
>gi|183227669|dbj|BAG24499.1| rad57 [Coprinopsis cinerea]
Length = 470
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 41/172 (23%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T A LD+ LGGGI V EI G GK+QL +QL++ VQ P E GG+ G A Y+
Sbjct: 80 LSTGDAYLDHALGGGIRTGMVWEIVGESAAGKSQLALQLSLFVQNPPELGGIHGAACYLT 139
Query: 116 KCLGFYTEQ---------------------------------SAVINYLDKFVSEHK--- 139
T + + ++N L F+ + +
Sbjct: 140 TSSKLPTSRLSQMLQSNENLSKDSCDLAHVHTIRVNTTPMLTNVLMNLLPNFIQQQQTTS 199
Query: 140 -DVKVVIIDSIAFHFRH----GFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
VK+++ID++A FR L R++ L+ +AL L LA + ++A++
Sbjct: 200 HPVKLLVIDALAELFRSTEKMSKTTLFDRSKELNQLALDLHALATRHNIAVV 251
>gi|207346868|gb|EDZ73231.1| YDR004Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 264
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 39/165 (23%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKF 181
K+VIIDSI+ H R + + R L +A KL LA +
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDY 264
>gi|221053592|ref|XP_002258170.1| Meiotic recombination protein DMC1-like protein [Plasmodium
knowlesi strain H]
gi|193808003|emb|CAQ38707.1| Meiotic recombination protein DMC1-like protein,putative
[Plasmodium knowlesi strain H]
Length = 347
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
+ L ++ + +ITT + LD LGGGI +TE+ G GKTQ+ LAV+ Q+P
Sbjct: 98 NQLAHKRSKVLKITTGSSSLDRTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRS 157
Query: 104 FGGLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEH---------- 138
GG GK YI F E+ I Y F EH
Sbjct: 158 AGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAA 217
Query: 139 ----KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ ++++DSI FR F +L+ R + L+ L L ++F++A+L N
Sbjct: 218 KMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTLSVLSKLGEQFNIAVLITN 275
>gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa]
gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa]
gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa]
Length = 339
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQ+ LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 192
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++IIDS +R + +L+ R L+ L
Sbjct: 193 RAFNTDHQTQLLYQASAMMVESRYALLIIDSATALYRTDYSGRGELSARQMHLARFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 253 LRLADEFGVAVVITN 267
>gi|327353831|gb|EGE82688.1| meiotic recombination protein dmc1 [Ajellomyces dermatitidis ATCC
18188]
Length = 358
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 34/187 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + RI+T D+IL GG ++E+ G GKTQL ++V Q+P + G
Sbjct: 88 LGHQRKRVVRISTGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMG 147
Query: 106 GLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK----------- 139
G GK YI F E+ A I Y SEH+
Sbjct: 148 GAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELLNTLAKEF 207
Query: 140 ---DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
+ +++IIDSI FR + +LA R + L+ +KL ++A+ + P++ T
Sbjct: 208 AGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEG-EYRCVHPHILWT 266
Query: 194 ANLAESC 200
A L SC
Sbjct: 267 AWLT-SC 272
>gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta]
Length = 310
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD---ISRGTQTAWDMLQEE--------------- 49
I+A KL +GY ++ S+ A+ + I ++ + LQ+E
Sbjct: 3 ITAGDIKKLQDSGYHTVESVAYATKKELIAIKGISEAKAEKLQQEASKMVMMGFKSATEI 62
Query: 50 ---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+ ++ ITT +LD +LGGGI +TE+ G GK+QL LAVN Q+P+ GG
Sbjct: 63 HQTRANIVYITTGSKELDKLLGGGIETGSITELFGEFRSGKSQLCHTLAVNCQLPISMGG 122
Query: 107 LGGKAIYIGKCLGFYTEQ 124
GK +YI F E+
Sbjct: 123 AEGKCLYIDTENTFRPER 140
>gi|408405119|ref|YP_006863102.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365715|gb|AFU59445.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 276
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 32/167 (19%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
RI+T D++LGGG+ + VTE+ G G GKTQL L V VQ GGL KA+YI
Sbjct: 40 RISTGSKSFDDLLGGGLETKAVTEVYGEFGTGKTQLCHTLCVMVQQSRLAGGLDAKALYI 99
Query: 115 GKCLGFYTEQSAVINYLDKF-----------------------------VSEHKDVKVVI 145
F E+ I F V E +++++
Sbjct: 100 DTENTFRPERIVSIAEARGFDPRKSLENVIVAKAYNSAHQELIIEEAGAVIEDNSIRLIV 159
Query: 146 IDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+DS H+R F+ L+ R + L+ L+ +A+ + +A++ N
Sbjct: 160 VDSAVAHYRAEFLGRATLSERQQRLNKFMHILVRIAETYEVAVVLTN 206
>gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi]
Length = 346
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
ISA KL AGY ++ SI A + I G TA +M
Sbjct: 40 ISAGDMKKLSEAGYHTVESIVYAPKKNLLAIKGISEAKADKLLAESQKLIPTGFTTATEM 99
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + +ITT +LD +L GGI +TE+ G GK+QL LAV Q+P++ G
Sbjct: 100 -HMRRSQIIQITTGSKELDKLLKGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHG 158
Query: 106 GLGGKAIYIGKCLGFYTEQ 124
G GK +YI F E+
Sbjct: 159 GAEGKCLYIDTEGTFRPER 177
>gi|440299712|gb|ELP92260.1| hypothetical protein EIN_118340 [Entamoeba invadens IP1]
Length = 267
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 37 RGTQTAWDMLQEEQE-SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
+ T+T D+ ++ + + + T DLD IL GG+ ++ +I G PGIGK+QL +Q+A
Sbjct: 6 KKTETLSDIFEKTRTLQIKNVPTFNEDLDRILQGGLEFGQMIQIVGFPGIGKSQLCMQVA 65
Query: 96 VNVQIPVEFGGLGGKAIY 113
N +P+ GG G Y
Sbjct: 66 CNATLPISLGGCNGVVHY 83
>gi|444313351|ref|XP_004177333.1| hypothetical protein TBLA_0A00120 [Tetrapisispora blattae CBS 6284]
gi|387510372|emb|CCH57814.1| hypothetical protein TBLA_0A00120 [Tetrapisispora blattae CBS 6284]
Length = 467
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 44/162 (27%)
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ TT +D +L GGI E+TE+ G GKTQ +QL++NVQ+ +E GGL G +
Sbjct: 127 IQHFTTGDPKIDQLLNGGIYTHEITEVFGESSSGKTQFLLQLSLNVQLGIEKGGLDGSCV 186
Query: 113 YI------------------GKCLGFYTEQSAVINY-----------------------L 131
+I K + E++ + Y L
Sbjct: 187 FITTEGDLPTRRLEDLIVENKKYKSYQFEKNDFLYYSQEKIYTVSCNDLISQDHILNVQL 246
Query: 132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALK 173
+ + ++K+VIIDSI+ H R V+L + + + + K
Sbjct: 247 PILLERNPNIKLVIIDSISHHMR---VELQIPRKRYNNLNTK 285
>gi|325969248|ref|YP_004245440.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
gi|323708451|gb|ADY01938.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
Length = 318
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 38/191 (19%)
Query: 32 SSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
S+ +SR T A E + R+ T+ +D +L GG+ + + E G G GKTQL
Sbjct: 66 SNRVSRATDIAKSF-----EGITRLRTNVRAIDELLQGGLEPKAIYEFAGEFGTGKTQLC 120
Query: 92 IQLAVNVQIPVEFGGLGGKAIYI--------GKCLG----FYTEQS---------AVINY 130
QL+V VQ+ + GG+GG A+Y+ G+ + F + + VIN
Sbjct: 121 HQLSVTVQLSQDKGGVGGAAVYLDTEEAFSPGRIINIAQRFDLDPNETLDNIYVIKVINA 180
Query: 131 LD-----KF----VSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178
D KF + E + +++++DSI +R F LA R + L+ I LM +A
Sbjct: 181 ADLEDRIKFDVVKLVEQANARLIVVDSIIALYRAEFKGRERLAERQQRLNYILDWLMRIA 240
Query: 179 KKFSLALLEPN 189
K +++ ++ N
Sbjct: 241 KLYNVYVVLTN 251
>gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+]
gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LD +L GGI VTEI G G
Sbjct: 75 ILTEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTEIFGEFRTG 133
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P + GG GK +YI F + AV N Y
Sbjct: 134 KSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYA 193
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++I+DS +R F+ +L+ R L+ L
Sbjct: 194 RAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQTHLAKFMRTL 253
Query: 175 MNLAKKFSLALL 186
LA +F +A++
Sbjct: 254 QRLADEFGIAVV 265
>gi|156848553|ref|XP_001647158.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
70294]
gi|156117842|gb|EDO19300.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
70294]
Length = 460
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 34/126 (26%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT 122
LD LGGGI + +TEI G GK+QL + L++ VQ+P GGL GK++YI T
Sbjct: 94 LDEALGGGIYTQCITEIYGESSTGKSQLAMLLSLCVQLPKSLGGLEGKSVYITTEGDLPT 153
Query: 123 EQ-SAVINYLDKF----VSEHK-----------------------------DVKVVIIDS 148
E+ +IN + F VS+ K +K +IIDS
Sbjct: 154 ERLEGIINSNETFSSNGVSQEKIFTVSCNDLINQEHILDVQLPVLLDNSKGSIKAIIIDS 213
Query: 149 IAFHFR 154
I+ H R
Sbjct: 214 ISHHLR 219
>gi|401412279|ref|XP_003885587.1| putative meiotic recombination protein DMC1-like protein [Neospora
caninum Liverpool]
gi|325120006|emb|CBZ55559.1| putative meiotic recombination protein DMC1-like protein [Neospora
caninum Liverpool]
Length = 349
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +ITT LD +LGGG +TE+ G GKTQ+ + V Q+P +
Sbjct: 102 LVQKRGRVIKITTGSDQLDQLLGGGFETMSITELFGENRCGKTQICHTVCVTAQLPRDMK 161
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEH------------ 138
G GK YI F E+ V++ Y F +EH
Sbjct: 162 GGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYARAFTTEHMYQLLTIAAAKM 221
Query: 139 --KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ V+I+DSI FR F +LA R + L+ + +M LA++++LA+L N
Sbjct: 222 CEERFSVLIVDSIIALFRVDFSGRGELADRQQKLNKMLSVMMKLAEQYNLAVLLTN 277
>gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus]
gi|585772|sp|Q08297.1|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
Full=RAD51 homolog A
gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus]
gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus]
gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus]
gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus]
gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus]
gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus]
gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|1093114|prf||2102359A RAD51-like protein
Length = 339
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
I+A KL AGY ++ ++ A + + G TA +
Sbjct: 33 INANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILTEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +ITT +LD +L GGI +TE+ G GKTQ+ LAV Q+P++ G
Sbjct: 93 HQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 VESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|390594260|gb|EIN03673.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 534
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 49/213 (23%)
Query: 17 ISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREV 76
IS +L +IC+ ++ R T D + ITT+ LD +LGGGI +
Sbjct: 49 ISEVNRALDAICT----ELRRPTHPLQDAFDDAVSGT--ITTADDALDALLGGGIQTGMM 102
Query: 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI---------------------- 114
++ G GKTQL +QL++ VQ P E GGL G + YI
Sbjct: 103 WDVSGESAAGKTQLALQLSLAVQFPPEMGGLSGSSCYITTRSRLPTTRLLEIAQNHPRLD 162
Query: 115 ------GKCLGFYTEQSAVINY-----LDKFVSEHKD------VKVVIIDSIA--FHFRH 155
+T ++ + L +FV++ D V++V+ID++ FH
Sbjct: 163 PNICGLADIHTLHTPTPPMLQHVLDVVLPRFVNQISDRSGARPVRLVVIDTLTELFHSET 222
Query: 156 GFVDLAL--RTRVLSGIALKLMNLAKKFSLALL 186
L R++++S ++ L LA + LA++
Sbjct: 223 RTTSHWLFERSKIISALSASLHALASQRGLAIV 255
>gi|156097941|ref|XP_001615003.1| meiotic recombination protein DMC1-like protein [Plasmodium vivax
Sal-1]
gi|148803877|gb|EDL45276.1| meiotic recombination protein DMC1-like protein, putative
[Plasmodium vivax]
Length = 347
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 30 ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQ 89
AS + G TA ++ + + L +ITT + LD LGGGI +TE+ G GKTQ
Sbjct: 85 ASKIENCSGFITAHQLVHKRSKVL-KITTGSSTLDKTLGGGIESMSITELFGENRCGKTQ 143
Query: 90 LGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN---------------YLDKF 134
+ LAV+ Q+P GG GK YI F E+ I Y F
Sbjct: 144 ICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAF 203
Query: 135 VSEH--------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNL 177
EH + ++++DSI FR F +L+ R + L+ L L
Sbjct: 204 THEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKL 263
Query: 178 AKKFSLALLEPN 189
++F++A+L N
Sbjct: 264 GEQFNIAVLITN 275
>gi|357130009|ref|XP_003566651.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Brachypodium
distachyon]
Length = 364
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 16 LISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLA---RITTSCADLDNILGGGIG 72
L+ AG + S S QTA +L EE+ L R+ T+ LD LGGGI
Sbjct: 41 LLDAGIAVARAAVSHVSEVACPPCQTALALL-EERVRLGGGGRLATTLRGLDEALGGGIP 99
Query: 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
++TE+ G GIGKTQ ++LA+ +P +GGL G+ +YI
Sbjct: 100 VGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVVYI 141
>gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus]
gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus
norvegicus]
gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus
norvegicus]
Length = 339
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
I+A KL AGY ++ ++ A + + G TA +
Sbjct: 33 INANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +ITT +LD +L GGI +TE+ G GKTQ+ LAV Q+P++ G
Sbjct: 93 HQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 VESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster]
Length = 337
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + ++TT +LD +L GGI +TE+ G G
Sbjct: 72 ILAEAAKLVPMGFTTATEFHQRRSE-IIQVTTGSKELDKLLQGGIETGSITEMFGEFRTG 130
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 131 KTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 190
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L+ L
Sbjct: 191 RAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 250
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 251 LRLADEFGVAVVITN 265
>gi|291410935|ref|XP_002721745.1| PREDICTED: X-ray repair cross complementing protein 3-like
[Oryctolagus cuniculus]
Length = 344
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
Query: 8 ISATQRGKLISAGY------TSLSSICSASSSDIS----------RGTQ--TAWDMLQEE 49
I+A +R KL SA L + S D+ RG+ TA + Q++
Sbjct: 11 ITAVRRAKLKSAKELLRFSGPDLQRVTGLSGPDVRHLLRAASLSLRGSSVLTALHLHQQK 70
Query: 50 QESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
A R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GG
Sbjct: 71 DRFPAQHQRLSLGCPVLDGLLRGGLPLDGITELAGPGSAGKTQLALQLCLAVQFPRQHGG 130
Query: 107 LGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVK 142
L A+YI C TE + L + + +H ++
Sbjct: 131 LQAGAVYI--C----TEGAFPTRRLQQLIGQHWRLR 160
>gi|237843305|ref|XP_002370950.1| meiotic recombination protein DMC1-like protein, putative
[Toxoplasma gondii ME49]
gi|211968614|gb|EEB03810.1| meiotic recombination protein DMC1-like protein, putative
[Toxoplasma gondii ME49]
gi|221481850|gb|EEE20220.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
GT1]
gi|221502349|gb|EEE28082.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii
VEG]
Length = 349
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L +++ + +ITT LD +LGGG +TE+ G GKTQL + V Q+P +
Sbjct: 102 LVQKRGRVIKITTGSDQLDQLLGGGFETMSITELFGENRCGKTQLCHTVCVTAQLPRDMK 161
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEH------------ 138
G GK YI F E+ V++ Y F +EH
Sbjct: 162 GGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYARAFTTEHMHQLLTLAAAKM 221
Query: 139 --KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ V+I+DSI FR F +LA R + L+ + +M LA++++LA++ N
Sbjct: 222 CEERFSVLIVDSIIALFRVDFSGRGELADRQQKLNRMLSIMMKLAEQYNLAVMLTN 277
>gi|115610811|ref|XP_788683.2| PREDICTED: DNA repair protein RAD51 homolog 1-like
[Strongylocentrotus purpuratus]
Length = 335
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA Q+ E + ++TT +LD +L GGI +TEI G GKTQL +
Sbjct: 78 VPMGFTTATQFHQQRSE-IIQVTTGSKELDKLLQGGIETGSITEIFGEFRTGKTQLCHTM 136
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR 154
AV Q+P++ GG GK +YI F E+ +I D++ DV +D++A+
Sbjct: 137 AVTCQLPIDNGGGEGKCLYIDTEGTFRPER--LIAVADRYNLSGSDV----LDNVAYARA 190
Query: 155 H 155
H
Sbjct: 191 H 191
>gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori]
gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori]
Length = 338
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA + Q+ E + ++TT +LD +LGGGI +TEI G G
Sbjct: 73 ILAEASKLVPMGFTTATEFHQKRAE-IIQLTTGSKELDRLLGGGIETGSITEIFGEFRTG 131
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P+E G GK +YI F E+ +AV++ Y
Sbjct: 132 KTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYA 191
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ ++H+ ++I+DS +R + +L R L L
Sbjct: 192 RAYNTDHQTQLLVQACAMMAESRYSLIIVDSATALYRTDYSGRGELNSRQLHLGRFMRML 251
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 252 LRLADEFGVAVIITN 266
>gi|430812090|emb|CCJ30489.1| unnamed protein product [Pneumocystis jirovecii]
Length = 664
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 64/203 (31%)
Query: 45 MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
+L+EE++ L TT +D +L GGI V EI G G GK+Q +QL + VQ+P
Sbjct: 70 LLEEEKQFL---TTGDRVIDGVLSGGIPLGHVIEIAGESGTGKSQFCMQLCLTVQLPRVL 126
Query: 105 GGLGGKAIYIGKCLGFYT-----------------------------------------E 123
GGL AIYI G T E
Sbjct: 127 GGLERGAIYISTETGLSTKRLFEMAQGLTNRLKQEYPDVDLCLDGVGDRVYCATCVDLEE 186
Query: 124 QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR--------------------HGFVDLALR 163
Q +I++ E + +V++D+I H+R G VDL R
Sbjct: 187 QDHIIHFQLPVALERYNAGLVVLDNITTHYRAEYDISKVYSQTKTTNNTAKSGLVDLVNR 246
Query: 164 TRVLSGIALKLMNLAKKFSLALL 186
+R L + L +LA K A++
Sbjct: 247 SRDLVRLGAHLRSLASKHHCAII 269
>gi|340375202|ref|XP_003386125.1| PREDICTED: DNA repair protein XRCC3-like [Amphimedon queenslandica]
Length = 335
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 27/146 (18%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGT----------------------- 39
+ KL + L AG SLS I SS D+ R T
Sbjct: 1 MDKLAVPPAVSISLERAGLRSLSEILEYSSGDLVRRTGLKVYQVQGLIETASEAVLARFK 60
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
TA D+ Q + + +++ C +D L GG+ R +TE+ G GK+QL +QL++ V
Sbjct: 61 PLTAQDIRQIDNQ---KLSLGCPLIDETLQGGLLPRSLTEVAGTSAAGKSQLCLQLSLTV 117
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+ + GG KA+YI F++++
Sbjct: 118 QLREKHGGYSSKAVYISTEGPFHSKR 143
>gi|259488647|tpe|CBF88254.1| TPA: DNA repair protein (Rad57), putative (AFU_orthologue;
AFUA_1G12520) [Aspergillus nidulans FGSC A4]
Length = 554
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 42/205 (20%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T A LD +L GGI VTE+ G G GKTQ + L + VQ+P G G AIYI
Sbjct: 105 ISTLDAALDTLLNGGIATGYVTEVTGESGSGKTQFLLGLLLAVQLPPPQGA-GRSAIYIS 163
Query: 116 --------------KCLGFYT----------------------EQSAVINYLDKFVSEHK 139
+C + + Q ++NY +
Sbjct: 164 TEAPLATNRLSQLIECHPYLSTLSREQAPSLGRILSINAMDLESQDHILNYQLPVAIKRY 223
Query: 140 DVKVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+V +V+IDSI ++R H L+ R+ L+ + L NLA +A++ N +
Sbjct: 224 NVGLVVIDSITSNYRAEHTSHDLSGLSTRSGELAKLGQMLRNLAASEDVAIVVANQVSDR 283
Query: 195 NLAESCLTCLRDSGSRKAVAAAAAQ 219
++ L R +G R +++ A Q
Sbjct: 284 FEGDAPLPFSRVTGDRTPMSSPATQ 308
>gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa]
gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
Length = 353
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LD +L GGI VTEI G G
Sbjct: 78 ILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTEIFGEFRTG 136
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P + GG GK +YI F + AV N Y
Sbjct: 137 KSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYA 196
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++I+DS +R F+ +L+ R L+ L
Sbjct: 197 RAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQTHLAKFMRTL 256
Query: 175 MNLAKKFSLALL 186
LA +F +A++
Sbjct: 257 QRLADEFGIAVV 268
>gi|297695960|ref|XP_002825186.1| PREDICTED: DNA repair protein XRCC3 [Pongo abelii]
Length = 346
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 45/199 (22%)
Query: 41 TAWDMLQEEQESLA---RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA + Q+++ A R++ C LD +L GG+ +TE+ G GKTQL +QL +
Sbjct: 64 TALQLHQQKERFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123
Query: 98 VQIPVEFGGLGGKAIYI--------------------------GKCL-------GFYTEQ 124
VQ P + GGL A+YI G+ L + E
Sbjct: 124 VQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEH 183
Query: 125 SAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLM 175
A ++ L + V++ V ++V+IDS+A FR F A R R L + L
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARRLQSLGAALR 243
Query: 176 NLAKKFSLALLEPNLATTA 194
L+ F +L N T A
Sbjct: 244 ELSSAFQSPVLCINQVTEA 262
>gi|336272433|ref|XP_003350973.1| RAD51 protein [Sordaria macrospora k-hell]
gi|380090740|emb|CCC04910.1| putative RAD51 protein [Sordaria macrospora k-hell]
Length = 353
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LD +L GGI VTEI G G
Sbjct: 78 ILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTEIFGEFRTG 136
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P + GG GK +YI F + AV N Y
Sbjct: 137 KSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYA 196
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++I+DS +R F+ +L+ R L+ L
Sbjct: 197 RAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQTHLAKFMRTL 256
Query: 175 MNLAKKFSLALL 186
LA +F +A++
Sbjct: 257 QRLADEFGIAVV 268
>gi|324517282|gb|ADY46774.1| DNA repair protein RAD51 3 [Ascaris suum]
Length = 266
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 37/154 (24%)
Query: 44 DMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ---- 99
D+L E++ ++T LD +LGGGI EI G+ GK+QL +QLAVNVQ
Sbjct: 19 DVLLEKENEEEILSTGVIQLDTLLGGGITAGTFLEIVGLSSAGKSQLCMQLAVNVQKHKR 78
Query: 100 ------IPVEFGGLGGKAI-----------YIGKCLGFY--------TEQSAVINYLDKF 134
+ E GG K I Y+ CL + ++ ++ LD
Sbjct: 79 RNECVYVDTE-GGFSTKRICDIAMRCLPSEYVASCLQRIHHCRCHDAVQLTSTLHRLDTL 137
Query: 135 VSEHKDVKVVIIDSIAF-------HFRHGFVDLA 161
+S++ + ++I+DS+A H RH +D +
Sbjct: 138 ISQNPKIGLIIVDSVAMPLRGEIDHMRHMIMDFS 171
>gi|384487459|gb|EIE79639.1| DNA repair protein RAD51 [Rhizopus delemar RA 99-880]
Length = 344
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%)
Query: 22 TSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81
T + I S ++ G TA + +Q + + ITT +LD ILGGGI +TE+ G
Sbjct: 74 TKVDKIIKEVSLLVNTGFTTAME-IQTRRNEMIYITTGSKELDKILGGGIETGSITELFG 132
Query: 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY--------------IGKCLGFYTE---- 123
GK+QL LAV+ Q+ +E GG GK +Y I G TE
Sbjct: 133 EFRTGKSQLCHTLAVSCQLSMENGGAEGKCLYIDTEGTFRPSRILSIATRFGLDTEICLN 192
Query: 124 ------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Q+A++ ++E + ++I+DS+ +R F +L+LR L
Sbjct: 193 NIAYARAYNADHQAALLFQASSMMAETR-FSLLIVDSVIALYRTDFAGRGELSLRQMHLG 251
Query: 169 GIALKLMNLAKKFSLALLEPN 189
L +A +F +A++ N
Sbjct: 252 KFLRSLQRIADEFGVAIVITN 272
>gi|221102981|ref|XP_002169171.1| PREDICTED: DNA repair protein RAD51 homolog A-like [Hydra
magnipapillata]
Length = 336
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 58/244 (23%)
Query: 3 VSKLP---ISATQRGKLISAGYTSLSSIC-------------SASSSD---------ISR 37
VSKL ISA+ KL AG+ ++ S+ S + +D +
Sbjct: 22 VSKLEQHGISASDIKKLSEAGFYTVESLAYTPKKTLLAVKGISEAKADKILSEVIKLVPM 81
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G TA + Q+ E + +I++ +LD +L GG +TEI G GKTQL QL V
Sbjct: 82 GFTTATEFHQKRSE-IIQISSGSKELDKLLQGGFETGSITEIFGEFRTGKTQLCHQLCVT 140
Query: 98 VQIPVEFGGLGGKAIYIG--------KCLGFYTE-----QSAVIN--YLDKFVSEHKD-- 140
Q+PV+ GG GKA+Y+ +CL Q + N Y + S+H+
Sbjct: 141 CQLPVDCGGAEGKAMYVDTEGTFRPERCLAVAERYGLNGQEVLDNVAYARAYNSDHQTQL 200
Query: 141 ------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
++I+DS +R + +L+ R L+ L+ LA +F +A+
Sbjct: 201 LIHASAMMSEARYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAV 260
Query: 186 LEPN 189
+ N
Sbjct: 261 VITN 264
>gi|284162221|ref|YP_003400844.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
DSM 5631]
gi|284012218|gb|ADB58171.1| DNA repair and recombination protein RadB [Archaeoglobus profundus
DSM 5631]
Length = 220
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV---------------- 98
+I T LD +L GG VT+I G G GKT + + A +
Sbjct: 2 KIPTGSRCLDKLLSGGFESGTVTQIFGASGTGKTSICLMSAYSAVSQGYKVAYIDTEGLS 61
Query: 99 -----QIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF 153
QI V+ L K +YI + F +QSA I L K E +++K+VI+DS F +
Sbjct: 62 PERVSQIFVDKDKL--KEVYIHDVIDF-KQQSAAIKELAKLCKEFENLKLVIVDSFTFLY 118
Query: 154 RHGFVDLALRTRVLSGIALK---LMNLAKKFSLALLEPNLATT 193
R DL + +V + + L+ LA+KF LA++ N T
Sbjct: 119 RSELEDLEKQMKVKRELIAQLTFLLGLARKFDLAVVVTNQVFT 161
>gi|67517739|ref|XP_658655.1| hypothetical protein AN1051.2 [Aspergillus nidulans FGSC A4]
gi|40747013|gb|EAA66169.1| hypothetical protein AN1051.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 42/205 (20%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
I+T A LD +L GGI VTE+ G G GKTQ + L + VQ+P G G AIYI
Sbjct: 443 ISTLDAALDTLLNGGIATGYVTEVTGESGSGKTQFLLGLLLAVQLPPPQGA-GRSAIYIS 501
Query: 116 --------------KCLGFYT----------------------EQSAVINYLDKFVSEHK 139
+C + + Q ++NY +
Sbjct: 502 TEAPLATNRLSQLIECHPYLSTLSREQAPSLGRILSINAMDLESQDHILNYQLPVAIKRY 561
Query: 140 DVKVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194
+V +V+IDSI ++R H L+ R+ L+ + L NLA +A++ N +
Sbjct: 562 NVGLVVIDSITSNYRAEHTSHDLSGLSTRSGELAKLGQMLRNLAASEDVAIVVANQVSDR 621
Query: 195 NLAESCLTCLRDSGSRKAVAAAAAQ 219
++ L R +G R +++ A Q
Sbjct: 622 FEGDAPLPFSRVTGDRTPMSSPATQ 646
>gi|413936447|gb|AFW70998.1| hypothetical protein ZEAMMB73_666969 [Zea mays]
Length = 343
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ IC A+ +++G T D+L + ++S+ RIT LD +LGGGI +TE G
Sbjct: 123 VDKICEAAEKLLNQGFMTGNDLLLK-RKSVVRITIGSQALDELLGGGIETLCITEAFGEF 181
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
GKTQL L V+ Q+P+ G GK YI
Sbjct: 182 RSGKTQLAHTLCVSTQLPIHMHGGNGKVAYI 212
>gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina]
gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina]
Length = 343
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 23/129 (17%)
Query: 8 ISATQRGKLISAGYTSLSSIC----------------------SASSSDISRGTQTAWDM 45
ISA+ K+I AGY ++ +I S +S + G TA +
Sbjct: 35 ISASDIKKIIEAGYNTVEAIAYTPKRAILLIKGISEAKADKLISEASKLVPMGFTTATEF 94
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L ITT LD +L GGI +TEI G GK+Q+ LAV Q+P++ G
Sbjct: 95 HQRRCE-LISITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMG 153
Query: 106 GLGGKAIYI 114
G GK +YI
Sbjct: 154 GGEGKCLYI 162
>gi|350537799|ref|NP_001233686.1| DNA repair protein RAD51 homolog 1 [Cricetulus griseus]
gi|2500103|sp|P70099.1|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1
gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus]
gi|344253210|gb|EGW09314.1| DNA repair protein RAD51-like 1 [Cricetulus griseus]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
ISA KL AG+ ++ ++ A + + G TA +
Sbjct: 33 ISANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEF 92
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +ITT +LD +L GGI +TE+ G GKTQ+ LAV Q+P++ G
Sbjct: 93 HQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMM 211
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L+ L+ LA +F +A++ N
Sbjct: 212 VESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 267
>gi|242004733|ref|XP_002423233.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506212|gb|EEB10495.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 341
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
+++ + +I+T +LD ++GGGI +TE G GKTQ+ L V Q+P + G G
Sbjct: 95 KRKQVFKISTGSQELDKLIGGGIESMAITEAFGEFRTGKTQMSHTLCVTAQLPNDTGYTG 154
Query: 109 GKAIYIGKCLGFYTEQSAVIN---------------YLDKFVSEHKD------------- 140
GK I++ F ++ +I Y + SEH+
Sbjct: 155 GKVIFLDTEHTFRPDRLRLIADRFDLSQEEVLGNVLYARAYTSEHQQELLDYVAAKFYEE 214
Query: 141 ---VKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
K++++DSI FR G +LA R + L+ + +L +++++++A+ N T
Sbjct: 215 AGIYKLLVVDSIMALFRVDYSGRGELADRQQKLAQLMSRLQKISEEYNVAVFITNQMT 272
>gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|385301680|gb|EIF45853.1| dna repair protein rad51 [Dekkera bruxellensis AWRI1499]
Length = 396
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 8 ISATQRGKLISAGYTS---LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLD 64
I+ T + KLI+ S + + +S + G TA + Q E L +TT LD
Sbjct: 101 IAYTPKRKLITVKGISEQKADKLLTEASKIVPLGFTTATEFHQRRAE-LITLTTGSKQLD 159
Query: 65 NILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-- 122
+LGGGI +TE+ G GK+QL LA+ Q+PV+ GG GK +YI F
Sbjct: 160 TLLGGGIETGAITEVFGEFRTGKSQLCHTLAITAQLPVDMGGGEGKCLYIDTEGTFRPVR 219
Query: 123 -----------EQSAVIN--YLDKFVSEHK--------------DVKVVIIDSIAFHFR- 154
E A+ N Y + ++H+ ++I+DS+ +R
Sbjct: 220 LVSIARRFGLDENEALDNVAYARAYNADHQMQLLKQAAQMMSQSRFSLLIVDSVMALYRT 279
Query: 155 --HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
G +L+ R ++ L LA +F +A+L N
Sbjct: 280 DYSGRAELSARQMHVAKFMRALQRLADEFGIAVLITN 316
>gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens]
gi|114656377|ref|XP_001144621.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Pan
troglodytes]
gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Pongo
abelii]
gi|332235183|ref|XP_003266786.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Nomascus
leucogenys]
gi|397512609|ref|XP_003826633.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Pan
paniscus]
gi|397512613|ref|XP_003826635.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Pan
paniscus]
gi|402873987|ref|XP_003900829.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Papio
anubis]
gi|548663|sp|Q06609.1|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51;
Short=hRAD51; AltName: Full=RAD51 homolog A
gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens]
gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens]
gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens]
gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
sapiens]
gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens]
gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct]
gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct]
gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
CRA_d [Homo sapiens]
gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens]
gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct]
gi|355692613|gb|EHH27216.1| hypothetical protein EGK_17369 [Macaca mulatta]
gi|383414637|gb|AFH30532.1| DNA repair protein RAD51 homolog 1 isoform 1 [Macaca mulatta]
gi|387540962|gb|AFJ71108.1| DNA repair protein RAD51 homolog 1 isoform 1 [Macaca mulatta]
gi|410225338|gb|JAA09888.1| RAD51 homolog [Pan troglodytes]
gi|410262156|gb|JAA19044.1| RAD51 homolog [Pan troglodytes]
gi|410290586|gb|JAA23893.1| RAD51 homolog [Pan troglodytes]
gi|410329095|gb|JAA33494.1| RAD51 homolog [Pan troglodytes]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|403289415|ref|XP_003935854.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Saimiri boliviensis
boliviensis]
Length = 324
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 57 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 115
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 116 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 175
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 176 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 235
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 236 MLLRLADEFGVAVVITN 252
>gi|358378198|gb|EHK15880.1| hypothetical protein TRIVIDRAFT_227821 [Trichoderma virens Gv29-8]
Length = 467
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 53/194 (27%)
Query: 48 EEQESLARITTSCAD--------LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
EE++ I+T+ LD LGGG+ +TE G G+GKTQ + L + VQ
Sbjct: 86 EEKQPPPPISTTSDQFISTLDDGLDAALGGGVPVGHITEFTGESGVGKTQFLLSLCLAVQ 145
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------------ 123
+P GLG +A+YI G T
Sbjct: 146 LPAP-RGLGKQALYISTESGLATRRLAQMLEGNTILQEASEAGTPASLDGIHSAVTPDLE 204
Query: 124 -QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF-------VDLALRTRVLSGIALKLM 175
Q ++ Y + D+ ++IIDS+A ++R F ++A R+ L + L
Sbjct: 205 SQDHILEYQVPVLLSRHDIGLMIIDSVAANYRAEFERQGSHGSNMATRSADLIRLGALLR 264
Query: 176 NLAKKFSLALLEPN 189
+LA++ S+A++ N
Sbjct: 265 DLARRHSIAIIVAN 278
>gi|340376025|ref|XP_003386534.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Amphimedon
queenslandica]
Length = 345
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD--ISRG-TQTAWDMLQEEQESLA---------- 54
ISA KL AGY ++ S+ A + +G ++ D +Q E L
Sbjct: 38 ISANDVKKLSEAGYHTVESVAYAPKKALLVIKGISEAKADKIQNEAAKLVPMGFTTATEF 97
Query: 55 --------RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+ITT +LD +L GGI +TEI G GKTQL LAV Q+P++ GG
Sbjct: 98 HRRRSEIIQITTGSKELDTLLKGGIETGSITEIFGEFRTGKTQLCHMLAVTCQLPIDNGG 157
Query: 107 LGGKAIYIGKCLGFYTEQ 124
GK +YI F E+
Sbjct: 158 GEGKCLYIDSEGTFRPER 175
>gi|110349631|gb|ABG73290.1| putative DMC1 protein [Leucocoprinus fragilissimus]
Length = 87
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+QE ++ + I+T +D ILGGG+ + +TE+ G GKTQ+ ++V Q+P EFG
Sbjct: 17 VQERRKKVHIISTGSKSVDAILGGGLMSQSITEVYGEFRTGKTQMAHTMSVVAQLPPEFG 76
Query: 106 GLGGKAIYI 114
G GK YI
Sbjct: 77 GAAGKVAYI 85
>gi|313231030|emb|CBY19028.1| unnamed protein product [Oikopleura dioica]
Length = 334
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 36/186 (19%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T +D E++++ RI T ++LD +LGGGI +TE+ G GKTQL L V Q+
Sbjct: 82 TGYD-FAEKRKACFRIPTGSSELDRVLGGGIESMAITEVFGEFRTGKTQLAHTLCVTTQM 140
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQ----SAVIN-----------YLDKFVSEHK----DV 141
P G GGK YI F ++ +A N Y F SEH+ D+
Sbjct: 141 P-GIGHSGGKVAYIDTENTFRPDRLRPIAARFNLDADAILQNVVYARAFTSEHQMELLDL 199
Query: 142 ------------KVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
K++IIDSI FR G +L+ R + L+ + K+ +++++++ +
Sbjct: 200 VAAQFYSEPGVFKILIIDSIIGLFRVDYSGRGELSERQQKLAQMLSKVQKISEEYNVVVY 259
Query: 187 EPNLAT 192
N T
Sbjct: 260 ITNQMT 265
>gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct]
gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct]
Length = 340
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii]
gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii]
Length = 343
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 23/129 (17%)
Query: 8 ISATQRGKLISAGYTSLSSIC----------------------SASSSDISRGTQTAWDM 45
ISA+ K+I AGY ++ +I S +S + G TA +
Sbjct: 35 ISASDIKKIIEAGYNTVEAIAYTPKRAILLIKGISEAKADKLISEASKLVPMGFTTATEF 94
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E L ITT LD +L GGI +TEI G GK+Q+ LAV Q+P++ G
Sbjct: 95 HQRRCE-LISITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMG 153
Query: 106 GLGGKAIYI 114
G GK +YI
Sbjct: 154 GGEGKCLYI 162
>gi|30584233|gb|AAP36365.1| Homo sapiens X-ray repair complementing defective repair in Chinese
hamster cells 3 [synthetic construct]
gi|61371827|gb|AAX43738.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|61371833|gb|AAX43739.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
Length = 347
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 81 RLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 115 --------------------------GKCL-------GFYTEQSAVINYLDKFVSEHKDV 141
G+ L + E A ++ L + V++ V
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|397470932|ref|XP_003807064.1| PREDICTED: DNA repair protein XRCC3 [Pan paniscus]
Length = 346
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 81 RLSLGCPVLDALLHGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 115 --------------------------GKCL-------GFYTEQSAVINYLDKFVSEHKDV 141
G+ L + E A ++ L + V++ V
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGAALRELSSAFQSPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|16605546|emb|CAC86603.1| Rad51A protein [Physcomitrella patens]
gi|16605577|emb|CAC82996.1| Rad51A protein [Physcomitrella patens]
Length = 342
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD---------------ISRGTQ------TAWDML 46
IS+ KL AG+ ++ S+ ++ D I T+ T+ +
Sbjct: 36 ISSLDLKKLKDAGFCTVESVAYSAKKDLVLIKGLSDAKVDKIIEAATKLVPMGFTSAKQM 95
Query: 47 QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
E++ L +ITT + DNIL GGI +TEI G GK+Q+ L V Q+P++ GG
Sbjct: 96 HEQRAELIQITTGAKEFDNILEGGIETGSITEIYGEFRSGKSQICHTLCVTCQLPLDQGG 155
Query: 107 LGGKAIYI 114
GKA+YI
Sbjct: 156 GEGKALYI 163
>gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda
melanoleuca]
gi|410961504|ref|XP_003987322.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Felis
catus]
gi|426232982|ref|XP_004010496.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Ovis
aries]
gi|116255982|sp|Q2KJ94.1|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1
gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus]
gi|296483320|tpg|DAA25435.1| TPA: DNA repair protein RAD51 homolog 1 [Bos taurus]
gi|440911678|gb|ELR61319.1| DNA repair protein RAD51-like protein 1 [Bos grunniens mutus]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|389582494|dbj|GAB65232.1| meiotic recombination protein DMC1-like protein [Plasmodium
cynomolgi strain B]
Length = 230
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 30 ASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQ 89
AS + G TA ++ + + L RITT + LD LGGGI +TE+ G GKTQ
Sbjct: 85 ASKIENCSGFITAHQLVHKRSKIL-RITTGSSTLDQTLGGGIESMSITELFGENRCGKTQ 143
Query: 90 LGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSI 149
+ LAV+ Q+P GG GK YI F E+ + +++ +DV I+ +
Sbjct: 144 ICHTLAVSAQLPKSVGGGNGKVCYIDTEGTFRPEK--ICKIAERYGINGEDVLDNILYAR 201
Query: 150 AFHFRHGFVDLAL 162
AF H + LA+
Sbjct: 202 AFTHEHLYQLLAV 214
>gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris]
gi|75047603|sp|Q8MKI8.1|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
Full=cRad51
gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQ+ LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 192
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L+ L
Sbjct: 193 RGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 253 LRLADEFGVAVVITN 267
>gi|4885659|ref|NP_005423.1| DNA repair protein XRCC3 [Homo sapiens]
gi|153946427|ref|NP_001093588.1| DNA repair protein XRCC3 [Homo sapiens]
gi|153946430|ref|NP_001093589.1| DNA repair protein XRCC3 [Homo sapiens]
gi|20140428|sp|O43542.1|XRCC3_HUMAN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|20514393|gb|AAM23015.1|AF508041_1 X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|2921390|gb|AAC05368.1| X-ray repair cross-complementing protein 3 [Homo sapiens]
gi|12654421|gb|AAH01036.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|28071006|emb|CAD61884.1| unnamed protein product [Homo sapiens]
gi|30583673|gb|AAP36085.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|60655103|gb|AAX32115.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|60655105|gb|AAX32116.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|119602243|gb|EAW81837.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602244|gb|EAW81838.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602245|gb|EAW81839.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602246|gb|EAW81840.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602247|gb|EAW81841.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602248|gb|EAW81842.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|123982694|gb|ABM83088.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|123997359|gb|ABM86281.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|193784889|dbj|BAG54042.1| unnamed protein product [Homo sapiens]
gi|193785686|dbj|BAG51121.1| unnamed protein product [Homo sapiens]
gi|193785777|dbj|BAG51212.1| unnamed protein product [Homo sapiens]
gi|261861620|dbj|BAI47332.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
Length = 346
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 81 RLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 115 --------------------------GKCL-------GFYTEQSAVINYLDKFVSEHKDV 141
G+ L + E A ++ L + V++ V
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|358396943|gb|EHK46318.1| hypothetical protein TRIATDRAFT_196126 [Trichoderma atroviride IMI
206040]
Length = 482
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 45/168 (26%)
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT 122
LD LGGG+ +TE G G+GKTQ + L + VQ+P GLG +A+YI G T
Sbjct: 127 LDAALGGGVPVGHITEFTGESGVGKTQFLLSLCLAVQLPPPH-GLGKQALYISTESGLTT 185
Query: 123 E-------------------------------------QSAVINYLDKFVSEHKDVKVVI 145
Q ++ Y + ++ ++I
Sbjct: 186 RRLAQMLQGNTILREAAESGTPASLDGIHSAVTPDLETQDHILEYQVPVLLSRHEIGILI 245
Query: 146 IDSIAFHFRHGF-------VDLALRTRVLSGIALKLMNLAKKFSLALL 186
IDS+A +FR F ++A R+ L+ + L +LA++ ++A++
Sbjct: 246 IDSVAANFRAEFERQGSHGSNMATRSAELTRLGALLRDLARRHNIAVV 293
>gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1]
gi|408395010|gb|EKJ74198.1| hypothetical protein FPSE_05637 [Fusarium pseudograminearum CS3096]
Length = 348
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT +LD +L GGI VTE+ G
Sbjct: 73 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLG----FYTEQSAVIN--- 129
GK+Q+ LAV Q+P + GG GK +YI + LG F V++
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLLGVANRFGLSGEEVLDNVA 191
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 192 YARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFCGRGELSNRQTHLAKFMR 251
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 252 TLQRLADEFGIAVVITN 268
>gi|149692472|ref|XP_001503572.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Equus
caballus]
Length = 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that
searches for homology [Komagataella pastoris GS115]
gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that
searches for homology [Komagataella pastoris GS115]
gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Komagataella pastoris CBS 7435]
Length = 362
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 58/246 (23%)
Query: 1 MEVSKLP---ISATQRGKLISAGYTSLSSIC----------------------SASSSDI 35
M +SKL IS KL+ AGY ++ +I + +S +
Sbjct: 43 MPISKLEGNGISPGDIRKLMEAGYNTVEAIAYTPKRALLTVKGISEIKADKLLAEASKFV 102
Query: 36 SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
G TA + E L ITT LD +LGGGI +TE+ G GK+QL LA
Sbjct: 103 PMGFTTASEFHHRRSE-LICITTGSKKLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLA 161
Query: 96 VNVQIPVEFGGLGGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK- 139
V Q+P++ GG GK +Y I K G + + + Y + ++H+
Sbjct: 162 VTCQLPIDMGGGEGKCLYIDTEGTFRPIRLVSIAKRYGLNEDDTLDNVAYARAYNADHQL 221
Query: 140 -------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
++I+DSI +R F +L+ R ++ L LA +F +
Sbjct: 222 QLLNQAAAMMSESRFSLLIVDSIMALYRTDFSGRGELSARQMHVAKYMRTLQRLADEFGI 281
Query: 184 ALLEPN 189
A+L N
Sbjct: 282 AVLITN 287
>gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
Length = 352
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ +++ + +ITT +LD +LGGGI +TE+ G GKTQL +AV Q+P+E
Sbjct: 105 IHQKRSDIVQITTGSTELDKLLGGGIETGSITEVFGEFRTGKTQLCHMMAVTCQLPIEHS 164
Query: 106 GLGGKAIYIGKCLGFYTEQ 124
G GK +YI F E+
Sbjct: 165 GGEGKCLYIDTEGTFRPER 183
>gi|355715056|gb|AES05211.1| RAD51-like protein [Mustela putorius furo]
Length = 338
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|431896119|gb|ELK05537.1| DNA repair protein RAD51 like protein 1 [Pteropus alecto]
Length = 339
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus]
Length = 340
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 21/138 (15%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD---ISRGTQTAWDMLQEE--------------- 49
I+A KL AGY ++ S+ A D I ++ D L +E
Sbjct: 33 ITAGDIKKLQDAGYYTVESVAYAPRKDLITIKGISEAKADKLLQEASKIVMMGFKSATEI 92
Query: 50 ---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
+ ++ +TT +LD +LGGGI +TEI G GK+QL LAVN Q+P+ GG
Sbjct: 93 HQTRANIVYVTTGSKELDKLLGGGIETGSITEIFGEFRSGKSQLCHTLAVNCQLPICMGG 152
Query: 107 LGGKAIYIGKCLGFYTEQ 124
G+ +YI F E+
Sbjct: 153 AEGRCLYIDTENTFRPER 170
>gi|2921500|gb|AAC04805.1| XRCC3 [Homo sapiens]
gi|15079849|gb|AAH11725.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
Length = 346
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 81 RLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 115 --------------------------GKCL-------GFYTEQSAVINYLDKFVSEHKDV 141
G+ L + E A ++ L + V++ V
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGAMLRELSSAFQSPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic
construct]
Length = 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|332843176|ref|XP_003314577.1| PREDICTED: DNA repair protein XRCC3 isoform 1 [Pan troglodytes]
gi|410260908|gb|JAA18420.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Pan troglodytes]
Length = 346
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+YI
Sbjct: 81 RLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI 140
Query: 115 --------------------------GKCL-------GFYTEQSAVINYLDKFVSEHKDV 141
G+ L + E A ++ L + V++ V
Sbjct: 141 CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPV 200
Query: 142 -------KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGAALRELSSAFQSPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar]
gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar]
Length = 338
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
ISA+ KL AG+ ++ ++ A + + G TA +
Sbjct: 32 ISASDIKKLEDAGFHTIEAVAYAPKKELLNIKGISEAKADKVLAEAAKLVPMGFTTATEF 91
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +I+T +LD +L GGI +TE+ G GKTQL LAV Q+P++ G
Sbjct: 92 HQRRAE-IIQISTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQG 150
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 151 GGEGKAMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMM 210
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +LA R L L+ LA +F +A++ N
Sbjct: 211 AESRYALLIVDSATALYRTDYSGRGELAARQGHLGRFLRMLLRLADEFGVAVVITN 266
>gi|388854421|emb|CCF52005.1| probable DNA repair protein RAD51 [Ustilago hordei]
Length = 339
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 58/246 (23%)
Query: 1 MEVSKLP---ISATQRGKLISAGYTSLSSIC-------------SASSSD---------I 35
+ V+KL IS++ KL AGY ++ +I S + +D +
Sbjct: 23 LPVNKLEDFGISSSDCKKLAEAGYNTVEAIAFTPKKNLLLVKGISEAKADKILVEAAKLV 82
Query: 36 SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
G TA + E L ITT +LD ILGGG+ +TE+ G GK+QL LA
Sbjct: 83 PMGFTTATEFHARRNE-LISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLA 141
Query: 96 VNVQIPVEFGGLGGKAIYI--------------GKCLGFYTEQS-AVINYLDKFVSEHK- 139
V Q+PV+ GG GK +YI + G E+ + Y + ++H+
Sbjct: 142 VTCQLPVDMGGGEGKCLYIDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQL 201
Query: 140 -------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183
++I+DS+ +R F +L+ R L+ LM LA +F +
Sbjct: 202 QLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFGV 261
Query: 184 ALLEPN 189
A++ N
Sbjct: 262 AVVITN 267
>gi|449527239|ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis
sativus]
Length = 379
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + ++S + S S QTA ++++ + E LA ++T LD L GGI
Sbjct: 40 ELLDVGLSEVASAVAHISEIASPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G GIGKTQ ++L+ +P +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLDGRVIYI 142
>gi|62858453|ref|NP_001016393.1| RAD51 homolog [Xenopus (Silurana) tropicalis]
gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis]
Length = 336
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +I+T +LD +L GGI +TE+ G
Sbjct: 69 EKILAEAAKLVPMGFTTATEFHQRRSE-IIQISTGSKELDKLLQGGIETGSITEMFGEFR 127
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQL LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 247
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 248 MLLRLADEFGVAVVITN 264
>gi|344293992|ref|XP_003418703.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Loxodonta
africana]
Length = 339
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQ+ LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 190
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 191 YARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 250
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 251 MLLRLADEFGVAVVITN 267
>gi|403413652|emb|CCM00352.1| predicted protein [Fibroporia radiculosa]
Length = 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
I G Q+A ++ E L ITT +LD++LGGGI +TE+ G GK+Q+ L
Sbjct: 80 IPLGFQSATEVHARRSE-LVHITTGSKNLDSLLGGGIETGSITELFGEFRTGKSQICHTL 138
Query: 95 AVNVQIPVEFGGLGGKAIYI 114
AV Q+PV+ GG GK +YI
Sbjct: 139 AVTCQLPVDMGGGEGKCLYI 158
>gi|348579949|ref|XP_003475741.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Cavia
porcellus]
Length = 339
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQ+ LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA 192
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L+ L
Sbjct: 193 RGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRML 252
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 253 LRLADEFGVAVVITN 267
>gi|385867758|pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
gi|385867759|pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
gi|385867760|pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
gi|385867761|pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
gi|385867762|pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
gi|385867763|pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 44/200 (22%)
Query: 33 SDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGI 92
S + G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+
Sbjct: 2 SHMDLGFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 60
Query: 93 QLAVNVQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN 129
Q VN+Q P V G + KA+YI F E Q+ + N
Sbjct: 61 QSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 120
Query: 130 -----------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSG 169
++ + E ++K+V+IDS+ FR+ + LA R + L
Sbjct: 121 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 180
Query: 170 IALKLMNLAKKFSLALLEPN 189
L LA F+ +L N
Sbjct: 181 HMATLNKLADLFNCVVLVTN 200
>gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980]
gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 349
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GG+ VTEI G
Sbjct: 74 TKILTEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGVETGSVTEIFGEFR 132
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVA 192
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 193 YARAYNSDHQLQLLNQAAQMMCETRFSLLIVDSATALYRTDFTGRGELSSRQMHLAKFMR 252
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 253 MLQRLADEFGIAVVITN 269
>gi|119719653|ref|YP_920148.1| Rad51-like [Thermofilum pendens Hrk 5]
gi|119524773|gb|ABL78145.1| Rad51-like protein [Thermofilum pendens Hrk 5]
Length = 250
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGK 110
E ARI+T LD++L GGI +TE G G GKTQ+ QL+V VQ+P + GGL +
Sbjct: 25 EESARISTGVRSLDDLLEGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGGLNAR 84
Query: 111 AIYIGKCLGFYTEQ 124
A+Y+ F E+
Sbjct: 85 ALYVDTEGTFRPER 98
>gi|195451479|ref|XP_002072940.1| GK13420 [Drosophila willistoni]
gi|194169025|gb|EDW83926.1| GK13420 [Drosophila willistoni]
Length = 355
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 20 GYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEI 79
G + + I S +S + G +A Q E + +TT +LD +LGGGI +TEI
Sbjct: 80 GESKVDYIMSEASKLVPMGFTSARTYHQMRSE-VVMLTTGSKELDKLLGGGIETGSITEI 138
Query: 80 GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHK 139
G GKTQL LAV Q+P+ G GK +YI F E+ + I ++ E
Sbjct: 139 FGEFRCGKTQLCHTLAVTCQLPISQNGGEGKCLYIDTEGTFRPERLSAI--AQRYKMEEP 196
Query: 140 DVKVVIIDSIAF 151
DV +D++A+
Sbjct: 197 DV----LDNVAY 204
>gi|443897777|dbj|GAC75116.1| DNA repair protein RAD51/RHP55 [Pseudozyma antarctica T-34]
Length = 280
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 33/187 (17%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA + E L ITT +LD ILGGG+ +TE+ G GK+QL L
Sbjct: 9 VPMGFTTATEFHARRNE-LISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTL 67
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFY-TEQSAV--------------INYLDKFVSEHK 139
AV Q+PV+ GG GK +YI F T AV + Y + ++H+
Sbjct: 68 AVTCQLPVDMGGGEGKCLYIDTEGTFRPTRLLAVAERYGLNGEEVLDNVAYARAYNADHQ 127
Query: 140 --------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
++I+DS+ +R F +L+ R L+ LM LA +F
Sbjct: 128 LQLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG 187
Query: 183 LALLEPN 189
+A++ N
Sbjct: 188 VAVVITN 194
>gi|219119366|ref|XP_002180445.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217407918|gb|EEC47853.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 350
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 23/129 (17%)
Query: 8 ISATQRGKLISAGYTSLSSICSAS----------------------SSDISRGTQTAWDM 45
I+A KL +AGY ++ SI A+ S + +TA D
Sbjct: 45 IAANDIQKLNAAGYHTVESIAHATIRKLSDVKGISEAKVLKLKEITKSMVPMDFKTAADA 104
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
L E++++L +TT +LD +L GG+ +TE+ G GKTQL L V Q+ V G
Sbjct: 105 L-EDRKALVTLTTGSIELDKLLEGGVETGSITEVFGEFRTGKTQLCHTLCVTCQMAVTEG 163
Query: 106 GLGGKAIYI 114
G GKAIYI
Sbjct: 164 GAEGKAIYI 172
>gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
gi|347831947|emb|CCD47644.1| similar to DNA repair protein RAD51 homolog 1 [Botryotinia
fuckeliana]
Length = 349
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GG+ VTEI G
Sbjct: 74 TKILTEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGVETGSVTEIFGEFR 132
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRYGLSGEEVLDNVA 192
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 193 YARAYNSDHQLQLLNQAAQMMCETRFSLLIVDSATALYRTDFTGRGELSSRQMHLAKFMR 252
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 253 MLQRLADEFGIAVVITN 269
>gi|162605684|ref|XP_001713357.1| DNA repair protein Rad51 homolog [Guillardia theta]
gi|13794289|gb|AAK39666.1|AF083031_23 DNA repair protein Rad51 homolog [Guillardia theta]
Length = 331
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++ L +T+ +LD ILGGGI +TE+ G GKTQL L V Q+ V GG G
Sbjct: 88 RQDLIYLTSGSKELDKILGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLSVSKGGGEG 147
Query: 110 KAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
+A+YI F E+ +++ D+F +DV +D+IA+
Sbjct: 148 RALYIDTEGTFRPER--IVSIADRFNLNRQDV----LDNIAY 183
>gi|449463635|ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis
sativus]
Length = 371
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDMLQE--EQESLA-RITTSCADLDNILGGGI 71
+L+ G + ++S + S S QTA ++++ + E LA ++T LD L GGI
Sbjct: 40 ELLDVGLSEVASAVAHISEIASPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGI 99
Query: 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G GIGKTQ ++L+ +P +GGL G+ IYI
Sbjct: 100 PFGVLTELVGPAGIGKTQFCLKLSFLAALPPSYGGLDGRVIYI 142
>gi|194765033|ref|XP_001964632.1| GF23286 [Drosophila ananassae]
gi|190614904|gb|EDV30428.1| GF23286 [Drosophila ananassae]
Length = 234
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
QE +I T +D GGGI +TE+ G G GKTQ+ + L +NVQIP GGL G
Sbjct: 2 QEEPNKICTGIKGVDENYGGGISLGHITELIGNSGTGKTQMCLNLCLNVQIPKTAGGLEG 61
Query: 110 KAIYI 114
A++I
Sbjct: 62 SALFI 66
>gi|422295451|gb|EKU22750.1| dna repair protein rad51, partial [Nannochloropsis gaditana
CCMP526]
Length = 676
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ L +++T DLD +LGGG+ +TEI G GKTQL L V Q+P++ GG
Sbjct: 43 ETRKDLIQLSTGSKDLDALLGGGVETGSLTEIFGEFRTGKTQLCHTLCVTSQLPMDQGGG 102
Query: 108 GGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKV-VIIDSIAFHFRH 155
GKA+YI G + Q V ++E + V ++D++AF H
Sbjct: 103 EGKAMYI-DTEGTFRPQRLVA------IAERFGLDVDTVLDNVAFARAH 144
>gi|4322516|gb|AAD16074.1| recombination/repair protein RadA [Sulfolobus acidocaldarius]
Length = 133
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 33/132 (25%)
Query: 88 TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE------------------------ 123
TQL Q++++VQ+P E GGL GKA+YI F E
Sbjct: 1 TQLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMR 60
Query: 124 ------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKL 174
Q A+++ L + +++ +K++I+DSI HFR G +LA+R + L+ +L
Sbjct: 61 AINSDHQMAIVDDLQELITKDPAIKLIIVDSITSHFRAEYPGRENLAVRQQKLNKHLHQL 120
Query: 175 MNLAKKFSLALL 186
+ LA+ + +A++
Sbjct: 121 VRLAEMYDIAVI 132
>gi|389845606|ref|YP_006347845.1| DNA repair and recombination protein RadA [Haloferax mediterranei
ATCC 33500]
gi|448616777|ref|ZP_21665487.1| DNA repair and recombination protein RadA [Haloferax mediterranei
ATCC 33500]
gi|388242912|gb|AFK17858.1| DNA repair and recombination protein RadA [Haloferax mediterranei
ATCC 33500]
gi|445751432|gb|EMA02869.1| DNA repair and recombination protein RadA [Haloferax mediterranei
ATCC 33500]
Length = 343
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 84/272 (30%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWD------------ 44
++ LP + KL+ +GY S SI AS ++S G TA D
Sbjct: 5 DLENLPGVGPATADKLVESGYDSYQSIAVASPGELSNKADIGNSTAADIINAARDAADIG 64
Query: 45 ------MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
M+ E ++ + +++ ++D +LGGG+ + +TE+ G G GK+Q+ QL+VNV
Sbjct: 65 GFETGSMVLERRQQIGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQVTHQLSVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ---------------------------------S 125
Q+P E GGLGG I+I F E+ +
Sbjct: 125 QLPPEEGGLGGGCIFIDSEDTFRPERIDDMVRGLEDDVLEATLADRDIEGSIDDEETMTA 184
Query: 126 AVINYLDK---------------------FVSEHKD----VKVVIIDSIAFHFRHGFV-- 158
V ++LDK +H+D V+++ +DS+ HFR +V
Sbjct: 185 LVDDFLDKIHVAKAFNSNHQILLAEKAKELAGDHEDSDWPVRLLCVDSLTAHFRAEYVGR 244
Query: 159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+LA R + L+ LM + F+ +L N
Sbjct: 245 GELAERQQKLNKHLHDLMRIGDLFNTGILVTN 276
>gi|396462208|ref|XP_003835715.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
maculans JN3]
gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
maculans JN3]
Length = 348
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 33/194 (17%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
S + + +S + G TA +M E L ITT LD +L GGI +TEI G
Sbjct: 70 SKLLAEASKLVPMGFTTATEMHSRRSE-LISITTGSKQLDTLLAGGIETGSITEIFGEFR 128
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLG----FYTEQSAVIN--- 129
GK+Q+ LAV Q+P + GG GK +YI +CL F V++
Sbjct: 129 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLAVANRFGLSGEEVLDNVA 188
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 189 YARAYNSDHQLELLNQAAQMMTETRFSLLIVDSATSLYRTDFAGRGELSSRQTHLAKFMR 248
Query: 173 KLMNLAKKFSLALL 186
L LA +F +A++
Sbjct: 249 TLQRLADEFGIAVV 262
>gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 33/194 (17%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
S + + +S + G TA +M E L ITT LD +L GGI +TEI G
Sbjct: 70 SKLLAEASKLVPMGFTTATEMHSRRSE-LISITTGSKQLDTLLAGGIETGSITEIFGEFR 128
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLGFYT-------EQSAVIN 129
GK+Q+ LAV Q+P + GG GK +YI +CL E +
Sbjct: 129 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLAVANRYGLSGEEVLDNVA 188
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++++DS +R F +L+ R L+
Sbjct: 189 YARAYNSDHQLELLNQAAQMMTETRFSLLVVDSATALYRTDFAGRGELSARQTHLAKFMR 248
Query: 173 KLMNLAKKFSLALL 186
L LA +F +A++
Sbjct: 249 TLQRLADEFGIAVI 262
>gi|356565616|ref|XP_003551035.1| PREDICTED: DNA repair protein RAD51 homolog [Glycine max]
Length = 343
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 35/199 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+S + G +A + L +++++ +ITT +LD IL GG+ +TE+ G
Sbjct: 75 VDKIIEAASKLVPMGFTSASE-LHAQRDAIIQITTGSTELDKILEGGVETGSITELYGEF 133
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------- 127
GKTQL L V Q+P++ GG GKA+YI G + Q +
Sbjct: 134 RSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI-DAEGTFRPQRLLQIADRFGLNGADVLEN 192
Query: 128 INYLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
+ Y + ++H+ V+I+DS +R F +L+ R L+
Sbjct: 193 VAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKF 252
Query: 171 ALKLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 253 LRSLQKLADEFGVAIVITN 271
>gi|209946348|gb|ACI97405.1| spindle B [Drosophila simulans]
Length = 341
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 50/233 (21%)
Query: 11 TQRGKLISAGYTSLSSICSASSSDISRGTQTA---W--DMLQEEQE--------SLARIT 57
T + + + + SL +I + D R + A W +M Q +R++
Sbjct: 30 TPKVRFLDTRHQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVS 89
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
C+ LD GGGI R +TE+ G G+GKTQL +QL + VQ+P E GGLG YI
Sbjct: 90 FGCSALDRCTGGGIVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVAYICTE 149
Query: 118 LGFYTEQ-----------------------------------SAVINYLDKFVSEHKDVK 142
F + + VIN + + + +H +
Sbjct: 150 SSFPARRLLQMSKACEKRHPQMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH-GIG 208
Query: 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 209 LIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|109157830|pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 5 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 63
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 64 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 123
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 124 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 183
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 184 NKLADLFNCVVLVTN 198
>gi|452825486|gb|EME32482.1| DNA repair protein isoform 1 [Galdieria sulphuraria]
Length = 317
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 37/181 (20%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
++E +++L ITT + LD +LGGGI +TE+ G GKTQL L V Q+P
Sbjct: 64 VRERRKNLIHITTGSSALDELLGGGIETSSITEVFGEFRSGKTQLAHTLCVTAQLPKSVN 123
Query: 106 GLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHKD---------- 140
G G+ YI F E+ I LD + SEH+
Sbjct: 124 GAEGRVAYIDTENCFRPERIVEIAERFELDPEEVLDNILVARAYTSEHQRQILQIELLVH 183
Query: 141 --VKVV-------IIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188
K+V I+DS FR G +L+ R + L+ +L+ L+++F+LA+
Sbjct: 184 IAAKMVEETFGLLIVDSATALFRVDYSGRGELSERQQKLNRFMSQLLKLSEQFNLAVFIT 243
Query: 189 N 189
N
Sbjct: 244 N 244
>gi|395838671|ref|XP_003792234.1| PREDICTED: DNA repair protein XRCC3 [Otolemur garnettii]
Length = 349
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 73/182 (40%), Gaps = 42/182 (23%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
R++ C LD +L GG+ +TE+ G GKTQL +QL + VQ P + GGL A+Y+
Sbjct: 81 RLSLGCPVLDGLLCGGLPLEGITELAGRSSAGKTQLALQLCLAVQFPQQHGGLEAGAVYV 140
Query: 115 GKCLGFYTEQ-------------------SAVINYLDKFVSEH-KDV------------- 141
F T + I + D+ EH DV
Sbjct: 141 CTEDVFPTRRLQQLMALQTQLRTDVPGNVVQKIRFGDQIFVEHVADVDTLLECVTQKVPI 200
Query: 142 -------KVVIIDSIAFHFRHGFVDLA--LRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192
++V+IDS+A FR F A R R L + L L+ F +L N T
Sbjct: 201 LLSRGMARLVVIDSVAAPFRCEFDGQASVPRARRLQSLGSALRRLSWAFQTPVLCINQVT 260
Query: 193 TA 194
A
Sbjct: 261 EA 262
>gi|429852332|gb|ELA27473.1| DNA repair protein rad51 [Colletotrichum gloeosporioides Nara gc5]
Length = 350
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GGI VTE+ G
Sbjct: 75 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNVA 193
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F+ +L+ R L+
Sbjct: 194 YARAYNSDHQLQLLQQASAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQTHLAKFMR 253
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 TLQRLADEFGIAVVITN 270
>gi|410961506|ref|XP_003987323.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Felis
catus]
Length = 280
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
KTQ+ LAV Q+P++ GG GKA+YI
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYI 160
>gi|15669060|ref|NP_247864.1| DNA repair and recombination protein RadA [Methanocaldococcus
jannaschii DSM 2661]
gi|2500109|sp|Q49593.1|RADA_METJA RecName: Full=DNA repair and recombination protein RadA
gi|1378034|gb|AAC44122.1| RadA [Methanocaldococcus jannaschii]
gi|1591553|gb|AAB98875.1| DNA repair protein RAD51 (radA) [Methanocaldococcus jannaschii DSM
2661]
Length = 352
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 66/253 (26%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------G 38
++++LP + T KL AGYT I +AS +++ G
Sbjct: 35 DLTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAARIIEAARELCNLG 94
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
++ ++L + ++++ +++T +LD ILGGG+ + VTE G+ G GKTQ+ Q VN+
Sbjct: 95 FKSGTEVLSQ-RKNIWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNL 153
Query: 99 QIPVEFGGLGG---------KAIYIGKCLGFYTEQ------------SAVINYL------ 131
Q P KA+YI F E+ + V+N +
Sbjct: 154 QCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAY 213
Query: 132 ------------DKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+ + E ++K+VI+DS+ FR ++ LA R + L L
Sbjct: 214 NSDMQMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNK 273
Query: 177 LAKKFSLALLEPN 189
LA ++ ++ N
Sbjct: 274 LADIYNCVVIVTN 286
>gi|338717044|ref|XP_003363570.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2 [Equus
caballus]
Length = 280
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
KTQ+ LAV Q+P++ GG GKA+YI F E+
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 170
>gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana]
Length = 342
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T+ L +++ + +IT+ +LD +L GGI +TE+ G GKTQL L V Q+
Sbjct: 90 TSASQLHAQRQEIIQITSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQL 149
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
P++ GG GKA+YIG F ++ ++ D+F DV + + A++ H
Sbjct: 150 PMDQGGGEGKAMYIGAEGTFRPQR--LLQIADRFGLNGADVLENVAYARAYNTDH 202
>gi|342879606|gb|EGU80851.1| hypothetical protein FOXB_08718 [Fusarium oxysporum Fo5176]
Length = 348
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I +S + G TA +M Q E L ITT +LD +L GGI VTE+ G
Sbjct: 73 TKILGEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--------KCLG----FYTEQSAVIN--- 129
GK+Q+ LAV Q+P + GG GK +YI + LG F V++
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLLGVANRFGLSGEEVLDNVA 191
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 192 YARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFCGRGELSNRQTHLAKFMR 251
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 252 TLQRLADEFGIAVVITN 268
>gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi]
Length = 338
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I ++ + G TA + Q+ E + ++TT +LD +LGGGI +TE+ G G
Sbjct: 73 ILQEATKHVPMGFTTATEWHQKRSE-IIQLTTGSKELDKLLGGGIETGSITEMFGEFRTG 131
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII 146
KTQL LAV Q+PV G GK +YI TE + L +K V ++
Sbjct: 132 KTQLCHTLAVTCQLPVSQNGGEGKCLYID------TEGTFRPERLLATAERYKLVGTDVL 185
Query: 147 DSIAF 151
D++A+
Sbjct: 186 DNVAY 190
>gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis]
gi|2500105|sp|Q91918.1|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1
gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis]
gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis]
Length = 336
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +I+T +LD +L GG+ +TE+ G
Sbjct: 69 EKILAEAAKLVPMGFTTATEFHQRRSE-IIQISTGSKELDKLLQGGVETGSITEMFGEFR 127
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQL LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 247
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 248 MLLRLADEFGVAVVITN 264
>gi|406602980|emb|CCH45448.1| hypothetical protein BN7_5030 [Wickerhamomyces ciferrii]
Length = 372
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
I Q D+++ + + TT + D IL GG+ +TEI G K+Q +QL
Sbjct: 63 IQTNKQLGDDLIKGDDINQEVFTTGDLEFDKILNGGLRTGMITEIFGESSTAKSQFSMQL 122
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYT----------EQSAVINYLDKFVSEH------ 138
+ + + GGLGG ++YI T E IN D EH
Sbjct: 123 TKTINLSPDQGGLGGNSVYISTEGNLETKRLIEINPGIENVYYINCSDFETQEHILKVQL 182
Query: 139 --------KDVKVVIIDSIAFHFR-----HGFVDLALRTRVLSGIALKLMNLAKKFSLAL 185
K++++VIIDSI+ H R + + +L + + L L F++++
Sbjct: 183 PLLLKDPEKNIRLVIIDSISHHLRVELLNSNYENFNKNQIILQNLGIYLNKLCTDFNISM 242
Query: 186 LEPN 189
+ N
Sbjct: 243 ILTN 246
>gi|115385342|ref|XP_001209218.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
gi|114196910|gb|EAU38610.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624]
Length = 607
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 49/190 (25%)
Query: 49 EQESLARITTSCADLDNILGG-----------------GIGCREVTEIGGVPGIGKTQLG 91
+++ + RI+T D ILGG G ++E+ G GKTQL
Sbjct: 6 QRKKVVRISTGSKQFDAILGGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQLS 65
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVS 136
++V Q+P E GG GK YI F E+ A I Y S
Sbjct: 66 HTMSVVAQLPKEMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNS 125
Query: 137 EHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK 179
EH+ D +++IIDSI FR + +LA R + L+ +KL ++A+
Sbjct: 126 EHQLELLNTLSREFASGDYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAE 185
Query: 180 KFSLALLEPN 189
+F++ +L N
Sbjct: 186 EFNVCVLMTN 195
>gi|430812161|emb|CCJ30383.1| unnamed protein product [Pneumocystis jirovecii]
Length = 347
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNIL 67
IS + KL+S G S + + G TA + Q E L ITT LD +L
Sbjct: 68 ISEAKADKLLSEGTYKASKL-------VPMGFTTATEFHQRRSE-LISITTGSKQLDTLL 119
Query: 68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
GGI +TEI G GK+Q+ LAV Q+P++ GG GK +YI
Sbjct: 120 AGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYI 166
>gi|385303664|gb|EIF47724.1| dna repair protein rad57 [Dekkera bruxellensis AWRI1499]
Length = 479
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT +LD+ L GGI C + E+ G GK+ L + LA +Q+PVEFGGL GK+++
Sbjct: 92 FTTGDDELDSCLNGGIPCGYLIEVSGSSSTGKSNLLMSLAATIQLPVEFGGL-GKSVFEK 150
Query: 116 ------KCLGFYTEQSAVINYLDKFVSEHKDV 141
K + TE S L++ ++ ++D+
Sbjct: 151 EKHQXVKTMYISTESSLSTRRLEQIMNYYRDL 182
>gi|444706842|gb|ELW48160.1| Protein CASC5 [Tupaia chinensis]
Length = 1640
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA + Q E + +ITT +LD +L GGI +TE+ G GKTQ+ L
Sbjct: 1383 VPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTL 1441
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
AV Q+P++ GG GKA+YI F E+
Sbjct: 1442 AVTCQLPIDRGGGEGKAMYIDTEGTFRPER 1471
>gi|195391578|ref|XP_002054437.1| GJ22809 [Drosophila virilis]
gi|194152523|gb|EDW67957.1| GJ22809 [Drosophila virilis]
Length = 349
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+R+T CA LD GGG+ R +TEI G G+GK+Q+ +QL+++VQ+P GGLG +
Sbjct: 86 SRVTFGCAALDQCTGGGVSIRGITEICGASGVGKSQVLLQLSLSVQLPPRLGGLGKGVAF 145
Query: 114 IGKCLGF---------------YTEQSAVINYLDKFVSEHK------------------- 139
I F Y E+ +N+L EH+
Sbjct: 146 ICTEDAFPSRRLLQISKAFEARYPEEQ--LNFLGNIFIEHQYESQPLLECISNRLPQLLQ 203
Query: 140 --DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197
+ ++IIDS+A FR + D R R + + L++ A K+ A++ N T A
Sbjct: 204 AHSIGLIIIDSVAAIFRL-YTDFEERARDMRRMVHALLSYADKYDCAVVCSNQMTATEKA 262
Query: 198 E 198
+
Sbjct: 263 D 263
>gi|332374336|gb|AEE62309.1| unknown [Dendroctonus ponderosae]
Length = 338
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 8 ISATQRGKLISAGYTSLSSICSASS------------------SDISR----GTQTAWDM 45
I+A KL AGY ++ S+ A S++S+ G TA +
Sbjct: 32 INAGDIKKLEEAGYHTVESVAFAPKKYLLSIKGISEQKADKIHSEVSKLVPMGFTTATEF 91
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q+ + + ++T +LD +LGGGI +TE+ G GKTQ+ LAV Q+P + G
Sbjct: 92 HQKRADMIC-VSTGSKELDRLLGGGIETGSITELFGEFRTGKTQICHTLAVTCQLPTDCG 150
Query: 106 GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
G GK +YI F E+ ++ ++F E + ++D++A+
Sbjct: 151 GAEGKCLYIDTEGTFRPER--LLAVAERFKMEPQ----TVLDNVAY 190
>gi|256017145|ref|NP_001157742.1| DNA repair protein RAD51 homolog 1 isoform 3 [Homo sapiens]
gi|297696338|ref|XP_002825353.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 4 [Pongo
abelii]
gi|332235185|ref|XP_003266787.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Nomascus
leucogenys]
gi|332843551|ref|XP_003314669.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Pan troglodytes]
gi|397512611|ref|XP_003826634.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Pan
paniscus]
gi|119612838|gb|EAW92432.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
CRA_b [Homo sapiens]
gi|164506989|gb|ABY59731.1| Rad51 variant [Homo sapiens]
Length = 280
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
KTQ+ LAV Q+P++ GG GKA+YI F E+
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 170
>gi|348579951|ref|XP_003475742.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2 [Cavia
porcellus]
Length = 280
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G G
Sbjct: 74 ILAEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFRTG 132
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
KTQ+ LAV Q+P++ GG GKA+YI F E+
Sbjct: 133 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 170
>gi|294891379|ref|XP_002773550.1| structural maintenance of chromosome, putative [Perkinsus marinus
ATCC 50983]
gi|239878722|gb|EER05366.1| structural maintenance of chromosome, putative [Perkinsus marinus
ATCC 50983]
Length = 952
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
I G Q+A L E++ S+ RI+T C +D +L GG+ +TE+ G GK+Q L
Sbjct: 66 IPMGFQSAGQYL-EQRSSMIRISTGCPSIDALLRGGVETGSITEVFGESRSGKSQFCHAL 124
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINY 130
V Q+PV GG G+++YI F E+ A + +
Sbjct: 125 CVAAQLPVSQGGAAGRSLYIDTEGTFRPERLADMGH 160
>gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001]
Length = 350
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GGI VTE+ G
Sbjct: 75 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNVA 193
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F+ +L+ R L+
Sbjct: 194 YARAYNSDHQLQLLQQAGAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQTHLAKFMR 253
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 TLQRLADEFGIAVVITN 270
>gi|346320802|gb|EGX90402.1| DNA repair protein RAD51 [Cordyceps militaris CM01]
Length = 348
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT +LD +L GGI VTE+ G
Sbjct: 73 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
GK+Q+ LAV Q+P + GG GK +YI
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYI 161
>gi|345491182|ref|XP_003426545.1| PREDICTED: DNA repair protein XRCC3 [Nasonia vitripennis]
Length = 252
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 44/210 (20%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T C+ LD+ L GG+ + +T+I G G GKTQL +Q ++ QIP +GG A YI
Sbjct: 12 LSTGCSKLDSFLRGGLPRKGITQIYGESGTGKTQLALQFCLSAQIPKNSTDVGGVA-YIC 70
Query: 116 KCLGF--------YTEQSAVINY---------------------------LDKFVSEHKD 140
F + + V +Y L +S HK
Sbjct: 71 TEAAFPSSRLHELFKKSPLVKDYAISNEKIFIEHISNTEGLEDCIFQPDRLPTLLSMHK- 129
Query: 141 VKVVIIDSIAFHFR--HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA---N 195
+K++IIDSIA +R + +++ R + L + +L L+K +A++ N T N
Sbjct: 130 IKLLIIDSIAATYRVEYDLMNVKSRAKSLRKVGYQLQKLSKIHEMAVVCINQVTAMMGNN 189
Query: 196 LAESCLTCLRDSGSRKAVAAAAAQLGFVLF 225
E+ L+C ++ S A+ F L+
Sbjct: 190 YTEN-LSC-KEQPSLGITWASMVTNSFYLY 217
>gi|380492247|emb|CCF34743.1| DNA repair protein rhp51 [Colletotrichum higginsianum]
Length = 350
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT LD +L GGI VTE+ G
Sbjct: 75 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN-------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNVA 193
Query: 130 YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y + S+H+ ++I+DS +R F+ +L+ R L+
Sbjct: 194 YARAYNSDHQLQLLQQAGAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQTHLAKFMR 253
Query: 173 KLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 TLQRLADEFGIAVVITN 270
>gi|400601380|gb|EJP69023.1| putative RAD51 protein [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
+ I + +S + G TA +M Q E L ITT +LD +L GGI VTE+ G
Sbjct: 73 TKILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
GK+Q+ LAV Q+P + GG GK +YI
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYI 161
>gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus]
gi|6225914|sp|O77507.1|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1
gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus]
Length = 339
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +ITT +LD +L GGI +TE+ G
Sbjct: 72 DKILTEAAKLVPMGFTTATEFHQRRSE-IIQITTGSKELDKLLQGGIETGSITEMFGEFR 130
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
GKTQ+ LAV Q+P++ GG GKA+YI F E+
Sbjct: 131 TGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 170
>gi|328874953|gb|EGG23318.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
Length = 410
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 33/55 (60%)
Query: 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF 120
I GG +TEI G G GKTQL +QL +VQ+P E GGL G AIYIG F
Sbjct: 56 IESGGFTPNGITEISGEAGSGKTQLCMQLCFHVQLPYELGGLNGGAIYIGTETPF 110
>gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
Length = 350
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
ITT LD +LGGGI +TE+ G GK+QL LAV Q+P++ GG GK +YI
Sbjct: 107 ITTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 166
Query: 116 ----------------------KCL-------GFYTE-QSAVINYLDKFVSEHKDVKVVI 145
CL + E Q ++N+ + +SE + +I
Sbjct: 167 TEGTFRPVRLVSIAQRYGLNPEDCLDNVAYARAYNAEHQFQLLNHAAQMMSESR-FSCLI 225
Query: 146 IDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+DSI +R G +L+ R ++ L LA +F +A++ N
Sbjct: 226 VDSIMSLYRTDYSGRAELSARQTHVAKYMRTLQRLADEFGIAVVITN 272
>gi|402086982|gb|EJT81880.1| DNA repair protein rhp51 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 353
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + +S + G TA +M Q E L ITT +LD +L GG+ VTE+ G G
Sbjct: 78 ILAEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGVETGSVTELFGEFRTG 136
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN--------------YL 131
K+Q+ LAV Q+P + GG GK +YI F + AV N Y
Sbjct: 137 KSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYA 196
Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
+ S+H+ ++I+DS +R F+ +L+ R L+ L
Sbjct: 197 RAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQTHLAKFMRTL 256
Query: 175 MNLAKKFSLALLEPN 189
LA +F +A++ N
Sbjct: 257 QRLADEFGIAVVITN 271
>gi|296005023|ref|XP_001349356.2| meiotic recombination protein dmc1-like protein [Plasmodium
falciparum 3D7]
gi|13876949|gb|AAK43698.1|AF356553_1 meiotic recombination protein DMC1-like protein [Plasmodium
falciparum]
gi|225632246|emb|CAD51205.2| meiotic recombination protein dmc1-like protein [Plasmodium
falciparum 3D7]
Length = 347
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 33/181 (18%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA +++Q+ + L +ITT D LGGGI +TE+ G GKTQ+ LAV Q+
Sbjct: 96 TANELVQKRSKVL-KITTGSTVFDQTLGGGIESMCITELFGENRCGKTQVCHTLAVTAQL 154
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEH------- 138
P G GK YI F E+ AV++ Y F EH
Sbjct: 155 PKSLNGGNGKVCYIDTEGTFRPEKVCKIAERYGLDGEAVLDNILYARAFTHEHLYQLLAI 214
Query: 139 -------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188
+ ++++DSI FR F +L+ R + L+ L L+++F++A+L
Sbjct: 215 SAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLSEQFNIAILIT 274
Query: 189 N 189
N
Sbjct: 275 N 275
>gi|209944568|gb|ACI96515.1| spindle D [Drosophila simulans]
Length = 212
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 40/155 (25%)
Query: 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-- 126
GGI + E+ G G GKTQ+ +QL +NVQIP GGL G A++I F+ ++
Sbjct: 59 GGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDL 118
Query: 127 ----------------------VINY-----LDKFVS----------EHKDVKVVIIDSI 149
I+Y LD+ ++ +H D+K+++IDS+
Sbjct: 119 ALKLERQYAHRVPEFKAHKMLRKIHYVRCPKLDQLMATVLICHRHLVDHPDIKLIVIDSL 178
Query: 150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA 184
AF R D A R +L + + L ++ LA
Sbjct: 179 AFTLR-MLEDGAHRYEMLLELHESMRRLQRQHELA 212
>gi|449018929|dbj|BAM82331.1| DNA repair protein RAD51 [Cyanidioschyzon merolae strain 10D]
Length = 347
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 50 QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG 109
++ L +TT +LD +L GGI +TE+ G GK+QL L V Q+PV GG G
Sbjct: 106 RKDLVFLTTGSKELDALLQGGIETGSITELFGEFRTGKSQLCHTLCVTCQMPVAEGGAEG 165
Query: 110 KAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
KA+YI F E+ ++ ++F + +DV +D++AF
Sbjct: 166 KALYIDTEGTFRPER--IVQIAERFQLDPQDV----LDNVAF 201
>gi|358396157|gb|EHK45544.1| meiosis defective protein MEI3, partial [Trichoderma atroviride IMI
206040]
Length = 351
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 33/198 (16%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
L+ + +S + G TA +M Q E L ITT +LD +L GGI VTE+ G
Sbjct: 75 LAEVFFQASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEF 133
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-SAVIN------------- 129
GK+Q+ LAV Q+P + GG GK +YI F + AV N
Sbjct: 134 RTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAVANRFGLSGEEVLDNV 193
Query: 130 -YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
Y + S+H+ ++I+DS +R F +L+ R L+
Sbjct: 194 AYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFTGRGELSNRQTHLARFM 253
Query: 172 LKLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 RTLQRLADEFGIAVVITN 271
>gi|195329020|ref|XP_002031209.1| GM24163 [Drosophila sechellia]
gi|194120152|gb|EDW42195.1| GM24163 [Drosophila sechellia]
Length = 341
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 50/233 (21%)
Query: 11 TQRGKLISAGYTSLSSICSASSSDISRGTQTA---W--DMLQEEQE--------SLARIT 57
T + + + + SL +I + D R + A W +M Q +R++
Sbjct: 30 TPKVRFLDTRHQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVS 89
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
C+ LD GGG+ R +TE+ G G+GKTQL +QL + VQ+P E GGLG YI
Sbjct: 90 FGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVAYICTE 149
Query: 118 LGFYTEQ-----------------------------------SAVINYLDKFVSEHKDVK 142
F + + VIN + + + +H +
Sbjct: 150 SSFPARRLLQMSKACEKRHPQMELNFLGSIFVENHIEAEPLLACVINRIPRLMQQH-GIG 208
Query: 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 209 LIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|50311197|ref|XP_455622.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644758|emb|CAG98330.1| KLLA0F11957p [Kluyveromyces lactis]
Length = 329
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 43 WDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV 102
W + Q ++ I+T D++LGGGI +TE+ G GKTQL L V Q+P
Sbjct: 82 WQIRQ----AVMSISTGSKQFDSVLGGGIMTMSITEVFGEFRCGKTQLSHTLCVTAQLPK 137
Query: 103 EFGGLGGKAIYIGKCLGFYTEQSAV---------------INYLDKFVSEHK-------- 139
E G GK YI F E+ I+Y SEH+
Sbjct: 138 ELNGPEGKVAYIDTEGTFRPERIKQIAQGYDLDPEVCLENISYARALNSEHQMELLEQLG 197
Query: 140 ------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ +++I+DSI +FR G +L R + L+ +L +A++ ++A+ N
Sbjct: 198 EELSSGEYRLLIVDSIMANFRVDYSGRGELNERQQKLNQHLSRLNRIAEENNIAVFMTN 256
>gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502]
gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis]
Length = 347
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + +L + TT + LD +L GGI +TEI G GKTQL LAV Q+PVE G
Sbjct: 100 EARTNLIKFTTGSSQLDRLLQGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVEHKGG 159
Query: 108 GGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
GK ++I F E+ ++ D+F D +D+IA+
Sbjct: 160 EGKCLWIDTEGTFRPER--IVQIADRFNLNASDC----LDNIAY 197
>gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II]
gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II]
Length = 347
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E + +L + TT + LD +L GGI +TEI G GKTQL LAV Q+PVE G
Sbjct: 100 EARTNLIKFTTGSSQLDRLLQGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVEHKGG 159
Query: 108 GGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151
GK ++I F E+ ++ D+F D +D+IA+
Sbjct: 160 EGKCLWIDTEGTFRPER--IVQIADRFNLNASDC----LDNIAY 197
>gi|348537158|ref|XP_003456062.1| PREDICTED: DNA repair protein RAD51 homolog B [Oreochromis
niloticus]
gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus]
Length = 336
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 55/236 (23%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
ISA+ KL AG+ ++ ++ A + + G TA +
Sbjct: 30 ISASDIKKLEDAGFHTIEAVAYAPKKELLNIKGISEAKADKILTEAAKLVPMGFTTATEF 89
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
Q E + +I+T +LD +L GGI +TE+ G GKTQL LAV Q+P++ G
Sbjct: 90 HQRRAE-IIQISTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQG 148
Query: 106 GLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHKD---------- 140
G GKA+YI F E+ S V++ Y F ++H+
Sbjct: 149 GGEGKAMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASAMM 208
Query: 141 ----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
++I+DS +R + +L+ R L L+ LA +F +A++ N
Sbjct: 209 AESRYALLIVDSATALYRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITN 264
>gi|356547988|ref|XP_003542386.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Glycine max]
Length = 344
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 35/199 (17%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I A+S + G +A + L +++++ +ITT +LD IL GG+ +TE+ G
Sbjct: 76 VDKIIEAASKLVPMGFTSASE-LHAQRDAIIQITTGSRELDKILEGGVETGSITELYGEF 134
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---------------- 127
GKTQL L V Q+P++ GG GKA+YI G + Q +
Sbjct: 135 RSGKTQLCHTLCVTCQLPLDQGGGEGKAMYI-DAEGTFRPQRLLQIADRFGLNGVDVLEN 193
Query: 128 INYLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
+ Y + ++H+ V+I+DS +R F +L+ R L+
Sbjct: 194 VAYARAYNTDHQSRLLLEAASMMVETRFAVMIVDSATALYRTDFSGRGELSARQMHLAKF 253
Query: 171 ALKLMNLAKKFSLALLEPN 189
L LA +F +A++ N
Sbjct: 254 LRSLQKLADEFGVAIVITN 272
>gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3]
gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188]
Length = 348
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCAD 62
V+ P A ++ K IS + I + +S + G TA +M + L ITT
Sbjct: 53 VAYTPKRALEQIKGISE--QKAAKILAEASRIVPMGFTTATEM-HARRNDLICITTGSKQ 109
Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI-------- 114
LD +L GGI +TEI G GK+Q+ LAV Q+P + GG GK +YI
Sbjct: 110 LDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRP 169
Query: 115 ------GKCLGFYTEQS-AVINYLDKFVSEHK--------------DVKVVIIDSIAFHF 153
+ G E+ I Y + S+H+ ++I+DS +
Sbjct: 170 VRLLAVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALY 229
Query: 154 RHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
R F +LA R L+ KL LA +F +A++
Sbjct: 230 RTDFSGRGELANRQNHLAKFMRKLRTLADEFGIAVV 265
>gi|322708659|gb|EFZ00236.1| DNA repair protein RAD51 [Metarhizium anisopliae ARSEF 23]
Length = 1532
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I +S + G TA +M Q E L ITT +LD +L GGI VTE+ G G
Sbjct: 75 ILGEASKLVPMGFTTATEMHQRRSE-LISITTGSKNLDTLLAGGIETGSVTELFGEFRTG 133
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
K+Q+ LAV Q+P + GG GK +YI
Sbjct: 134 KSQICHTLAVTCQLPFDMGGGEGKCLYI 161
>gi|355784989|gb|EHH65840.1| hypothetical protein EGM_02690 [Macaca fascicularis]
Length = 340
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ I A++ I G TA++ E+++ + ITT + D +LGGGI +TE G
Sbjct: 69 KVDKIKEAANKLIEPGFLTAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGE 127
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN- 129
GKTQL L V Q+P G GGK I+I F + AV++
Sbjct: 128 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 187
Query: 130 --YLDKFVSEHKD----------------VKVVIIDSIAFHFRHGFV---DLALRTRVLS 168
Y + SEH+ K++IIDSI FR F +LA R + L+
Sbjct: 188 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 247
Query: 169 GIALKLMNLAK 179
+ +L +++
Sbjct: 248 QMLSRLQKISE 258
>gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
Length = 339
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 24 LSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVP 83
+ I S + + G TA + Q+ E L +TT +LD +LGGGI +TEI G
Sbjct: 71 VEKIISEAYKLVPMGFTTATEFHQKRAE-LILLTTGSKELDKLLGGGIETGSITEIFGEF 129
Query: 84 GIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKV 143
GKTQL LAV Q+P++ G GK +YI F E+ +I ++F DV
Sbjct: 130 RTGKTQLCHTLAVTCQLPIDQNGGEGKCLYIDTEGTFRPER--LIAVAERFKLSLSDVLD 187
Query: 144 VIIDSIAFHFRH 155
+ + A++ H
Sbjct: 188 NVAVARAYNTDH 199
>gi|50555670|ref|XP_505243.1| YALI0F10307p [Yarrowia lipolytica]
gi|49651113|emb|CAG78050.1| YALI0F10307p [Yarrowia lipolytica CLIB122]
Length = 421
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 36/183 (19%)
Query: 43 WDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV 102
+D+ E + L I+T +D ++ GG + E+ G GK+ +QL VNVQ+
Sbjct: 78 FDVDSERERPLDAISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLAR 137
Query: 103 EFGGLGGKAIYIGKCLGFYT--------------------------------EQSAVINY 130
GGLG KA++I G T +Q V Y
Sbjct: 138 GEGGLGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQDRVFQY 197
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALL 186
+ E +V+IDS+A H+R + D + R + L L LA+K ++A++
Sbjct: 198 NLPNLLEDSSYGLVVIDSLAAHYRSEELTSKGDFSSRDKRLLRTLHHLKGLARKHNVAVV 257
Query: 187 EPN 189
N
Sbjct: 258 FAN 260
>gi|359720475|gb|AEV54420.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
LAU09-781]
Length = 125
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 29/119 (24%)
Query: 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE---QS 125
GG+ + +TE G G GKTQ+ QLAVNVQ+P + GGL G A+YI F E Q
Sbjct: 1 GGLETQAITEFFGEFGSGKTQIMHQLAVNVQLPKDKGGLEGHAVYIDTENTFRPERIKQM 60
Query: 126 AVINYLDK------------FVSEHK--------------DVKVVIIDSIAFHFRHGFV 158
A LD F S H+ V+++I+DS+ HFR +V
Sbjct: 61 AEALELDPVEVLKKIHVARAFNSNHQILLVDKAMELAKEYPVRLLIVDSLTAHFRAEYV 119
>gi|209946340|gb|ACI97401.1| spindle B [Drosophila simulans]
Length = 341
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 50/233 (21%)
Query: 11 TQRGKLISAGYTSLSSICSASSSDISRGTQTA---W--DMLQEEQE--------SLARIT 57
T + + + + SL +I + D R + A W +M Q +R++
Sbjct: 30 TPKVRFLDTRHQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVS 89
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
C+ LD GGG+ R +TE+ G G+GKTQL +QL + VQ+P E GGLG YI
Sbjct: 90 FGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVAYICTE 149
Query: 118 LGFYTEQ-----------------------------------SAVINYLDKFVSEHKDVK 142
F + + VIN + + + +H +
Sbjct: 150 SSFPARRLLQMSKACEKRHPQMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH-GIG 208
Query: 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 209 LIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum]
Length = 338
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
++ G TA D + + ++ ++TT +LD +LGGGI +TEI G GKTQ+ L
Sbjct: 81 VNMGFTTATD-IHRRRANIIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQICHTL 139
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR 154
AV Q+ VE GG GK +YI F E+ ++ +++ + + V ++ + AF+
Sbjct: 140 AVTCQLSVESGGGEGKCLYIDTEGTFRPER--LLPVAERYNMDGQQVLDNVVFARAFNTD 197
Query: 155 H 155
H
Sbjct: 198 H 198
>gi|390340444|ref|XP_797868.2| PREDICTED: DNA repair protein RAD51 homolog 2-like
[Strongylocentrotus purpuratus]
Length = 271
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 41/150 (27%)
Query: 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE---QSAVINYLD 132
+TEI G PG GKTQ + L+V +PV GG+ G +Y+ F E + A + D
Sbjct: 102 ITEIAGPPGCGKTQFCMMLSVLATLPVGMGGMNGSVMYLDTESAFSAERMVEMAQCRFPD 161
Query: 133 KFVSE---------------------------------HKDVKVVIIDSIAFHFRHGF-- 157
F+SE K +++VI+DS+A R F
Sbjct: 162 YFLSEEALMNLVEKVHISVESTCSDLLQRLETVEEDLIEKGIRLVILDSVASPVRKEFDG 221
Query: 158 ---VDLALRTRVLSGIALKLMNLAKKFSLA 184
++ RT +LS A L LA++FS+
Sbjct: 222 RLGRNMVERTNLLSKQAAILKYLAEEFSIP 251
>gi|405118075|gb|AFR92850.1| recombinase [Cryptococcus neoformans var. grubii H99]
Length = 348
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 35 ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
+ G TA ++ E L ITT LD ILGGGI +TE+ G GK+QL L
Sbjct: 88 VPMGFTTATEIHSRRSE-LVHITTGSTGLDTILGGGIETGAITELYGEFRTGKSQLCHTL 146
Query: 95 AVNVQIPVEFGGLGGKAIYI 114
AV Q+PV GG GK +YI
Sbjct: 147 AVTCQLPVSMGGGEGKCLYI 166
>gi|350590540|ref|XP_003483086.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Sus scrofa]
Length = 127
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
V++VI+D IAF FRH DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 39 VRLVIVDGIAFPFRHELDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 91
>gi|347800669|ref|NP_998371.2| DNA repair protein RAD51 homolog 1 [Danio rerio]
Length = 340
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +I+T +LD +L GGI +TE+ G G
Sbjct: 75 ILTEAAKMVPMGFTTATEFHQRRAE-IIQISTGSKELDKLLQGGIETGSITEMFGEFRTG 133
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 134 KTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYA 193
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L L
Sbjct: 194 RAFNTDHQTQLLYQASAMMTESRYALLIVDSATALYRTDYSGRGELSARQGHLGRFLRML 253
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 254 LRLADEFGVAVVITN 268
>gi|432947216|ref|XP_004083949.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Oryzias
latipes]
Length = 340
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +I+T +LD +L GGI +TE+ G G
Sbjct: 75 ILTEAAKLVPMGFTTATEFHQRRSE-IIQISTGSKELDKLLQGGIETGSITEMFGEFRTG 133
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 134 KTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYA 193
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L L
Sbjct: 194 RAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQGHLGRFLRML 253
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 254 LRLADEFGVAVVITN 268
>gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis]
gi|2500106|sp|Q91917.1|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2
gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis]
gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis]
gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis]
Length = 336
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 25 SSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPG 84
I + ++ + G TA + Q E + +I T +LD +L GGI +TE+ G
Sbjct: 69 EKILAEAAKLVPMGFTTATEFHQRRSE-IIQIGTGSKELDKLLQGGIETGSITEMFGEFR 127
Query: 85 IGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN--- 129
GKTQL LAV Q+P++ GG GKA+YI F E+ S V++
Sbjct: 128 TGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVA 187
Query: 130 YLDKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIAL 172
Y F ++H+ ++I+DS +R + +L+ R L+
Sbjct: 188 YARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 247
Query: 173 KLMNLAKKFSLALLEPN 189
L+ LA +F +A++ N
Sbjct: 248 MLLRLADEFGVAVVITN 264
>gi|359720477|gb|AEV54421.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
LAU09-cd1713]
Length = 124
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 29/119 (24%)
Query: 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE---QS 125
GG+ + +TE G G GKTQ+ QLAVNVQ+P + GGL G A+YI F E Q
Sbjct: 1 GGLETQAITEFFGEFGSGKTQIMHQLAVNVQLPKDKGGLEGHAVYIDTENTFRPERIKQM 60
Query: 126 AVINYLDK------------FVSEHK--------------DVKVVIIDSIAFHFRHGFV 158
A LD F S H+ V+++I+DS+ HFR +V
Sbjct: 61 AEALELDPVEVLKKIHVARAFNSNHQILLVDKAMELAKEYPVRLLIVDSLTAHFRAEYV 119
>gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
Length = 350
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 8 ISATQRGKLISAGYTSLSSICSASSSD----------------------ISRGTQTAWDM 45
ISA+ KL GY ++ SI A I G TA +M
Sbjct: 44 ISASDVKKLSEVGYHTVESIVYAPKKSLLAIKGISEAKADKLLAEGQKLIPTGFTTATEM 103
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+ + +ITT +LD +L GGI +TE+ G GK+QL LAV Q+P++ G
Sbjct: 104 -HIRRSQIIQITTGSKELDKLLKGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHG 162
Query: 106 GLGGKAIYIGKCLGFYTEQ 124
G GK +YI F E+
Sbjct: 163 GAEGKCLYIDTEGTFRPER 181
>gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
Length = 342
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
T+ L ++ + ++TT +LD IL GGI +TEI G GKTQL L V Q+
Sbjct: 90 TSASQLHAQRLEIIQLTTGSRELDQILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQL 149
Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
P++ GG GKA+YI F E+ ++ D+F DV + + A++ H
Sbjct: 150 PLDQGGGEGKALYIDAEGTFRPER--LLQIADRFGLNGADVLENVAYARAYNTDH 202
>gi|209946342|gb|ACI97402.1| spindle B [Drosophila simulans]
Length = 341
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 50/233 (21%)
Query: 11 TQRGKLISAGYTSLSSICSASSSDISRGTQTA---W--DMLQEEQE--------SLARIT 57
T + + + + SL +I + D R + A W +M Q +R++
Sbjct: 30 TPKVRFLDTRHQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVS 89
Query: 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117
C+ LD GGG+ R +TE+ G G+GKTQL +QL + VQ+P E GGLG YI
Sbjct: 90 FGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLCLCVQLPRELGGLGKGVAYICTE 149
Query: 118 LGFYTEQ-----------------------------------SAVINYLDKFVSEHKDVK 142
F + + VIN + + + +H +
Sbjct: 150 SSFPARRLLQMSKACEKRHPQMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH-GIG 208
Query: 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
++IIDS+A FR + D R R + +A L++ A K++ A++ N T +
Sbjct: 209 LIIIDSVAAIFR-LYNDYLERARHMRRLADALLSYADKYNCAVVCVNQVATRD 260
>gi|429318287|emb|CCN27368.1| recombinase [Milnesium tardigradum]
Length = 366
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 20 GYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEI 79
G + I + S + G TA + + E L +ITT DLD +L GGI +TE+
Sbjct: 93 GEAKVERIITEGSKMVPMGFVTATEYHAKRSE-LVQITTGSKDLDRLLQGGIETGSITEV 151
Query: 80 GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI 128
G GK+QL LAV Q+P++ G GK +YI F E+ I
Sbjct: 152 FGEFRTGKSQLCHTLAVTCQLPIDMNGGEGKCLYIDTEGTFRPERLVAI 200
>gi|440798730|gb|ELR19797.1| DNA repair protein RAD51, putative [Acanthamoeba castellanii str.
Neff]
Length = 342
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 22 TSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81
T I + ++ + G TA + Q+++ + ++TT +LD +L GI +TEI G
Sbjct: 71 TKADKILAEAAKLVPMGFTTATE-FQKQRAEIIQVTTGSKELDKLLENGIETGSITEIFG 129
Query: 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
GKTQL QL V Q+P++ GG GKA+Y+
Sbjct: 130 EFRTGKTQLCHQLCVTCQLPLDQGGGEGKALYV 162
>gi|289192763|ref|YP_003458704.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
FS406-22]
gi|288939213|gb|ADC69968.1| DNA repair and recombination protein RadA [Methanocaldococcus sp.
FS406-22]
Length = 324
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 66/253 (26%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------G 38
++++LP + T KL AGYT I +AS +++ G
Sbjct: 7 DLTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAAKIIEAARELCNLG 66
Query: 39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
++ ++L + ++++ +++T +LD ILGGG+ + VTE G+ G GKTQ+ Q VN+
Sbjct: 67 FKSGTEVLSQ-RKNMWKLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQIAHQACVNL 125
Query: 99 QIPVEFGGLGG---------KAIYIGKCLGFYTEQ------------SAVINYL------ 131
Q P KA+YI F E+ V+N +
Sbjct: 126 QCPDRIIADDSIKDEILNEPKAVYIDTEGTFRPERIIQMAEALGLDGKEVLNNIFVARAY 185
Query: 132 ------------DKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMN 176
+ + E ++K++I+DS+ FR ++ LA R + L L
Sbjct: 186 NSDMQMLYAENVENLIREGHNIKLIIVDSLTSTFRTEYIGRGKLAERQQKLGRHMATLNK 245
Query: 177 LAKKFSLALLEPN 189
LA ++ ++ N
Sbjct: 246 LADLYNCVVIVTN 258
>gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio]
Length = 338
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 27 ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
I + ++ + G TA + Q E + +I+T +LD +L GGI +TE+ G G
Sbjct: 73 ILTEAAKMVPMGFTTATEFHQRRAE-IIQISTGSKELDKLLQGGIETGSITEMFGEFRTG 131
Query: 87 KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YL 131
KTQL LAV Q+P++ GG GKA+YI F E+ S V++ Y
Sbjct: 132 KTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLLAVAERYGLVGSDVLDNVAYA 191
Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
F ++H+ ++I+DS +R + +L+ R L L
Sbjct: 192 RAFNTDHQTQLLYQASAMMTESRYALLIVDSATALYRTDYSGRGELSARQGHLGRFLRML 251
Query: 175 MNLAKKFSLALLEPN 189
+ LA +F +A++ N
Sbjct: 252 LRLADEFGVAVVITN 266
>gi|403376234|gb|EJY88098.1| Meiotic recombination protein DMC1, putative [Oxytricha trifallax]
Length = 286
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 45 MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
++ E+++ + +I+T A D +L GG+ + +TE G GKTQL L V Q+P
Sbjct: 38 VIMEKRKKIKKISTGSATFDKLLQGGVESQGITEAFGEFRTGKTQLAHTLCVTAQLPKSQ 97
Query: 105 GGLGGKAIYIGKCLGFYTE-----------------------QSAVINYLDKFVSE---- 137
GG GK +YI F E +S ++ L+ + +
Sbjct: 98 GGGEGKVLYIDTENTFRPERIKQIARRFELDPDEVLNNIMVGRSFTVDSLNTLIMQAGGA 157
Query: 138 --HKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++IDSI FR G +L+ R +VL + K+ ++++F++A+ N
Sbjct: 158 MIEDQFSLLVIDSIMAPFRVDYSGRGELSERQQVLGKVLSKIQKISEQFNVAVFLSN 214
>gi|213402507|ref|XP_002172026.1| DNA repair and recombination protein radA [Schizosaccharomyces
japonicus yFS275]
gi|212000073|gb|EEB05733.1| DNA repair and recombination protein radA [Schizosaccharomyces
japonicus yFS275]
Length = 358
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116
TT ++D L GGI +TEI G G GK+Q IQL + VQ+P GGL A++I
Sbjct: 77 TTGDTEIDKALHGGIALDHITEISGESGSGKSQFCIQLCLTVQLPKSVGGLDRAAVFIST 136
Query: 117 CLGFYTEQSAVINYLDKFVS 136
G T + + L KF+S
Sbjct: 137 ESGLETRR---LFQLAKFLS 153
>gi|45685353|gb|AAS75434.1| putative Rad51B protein [Chlamydomonas reinhardtii]
Length = 392
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 15 KLISAGYTSLSSICSASSSDISRGTQTAWDML--QEEQESLARITTSCADLDNILGGGIG 72
+L+ +T+ + + S+ IS TA+D+ Q E+ A + T LD L G+
Sbjct: 40 ELLGLTWTAAHQLLADVSAQISPPYSTAYDVFTQQATAEAPAPLRTGLPTLDGALRLGVP 99
Query: 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+TE+ G G+GK+QL LA+ V +P GGLG +YI
Sbjct: 100 VGSITELVGPGGVGKSQLSHMLALAVAMPEALGGLGAGVVYI 141
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,065,638,669
Number of Sequences: 23463169
Number of extensions: 114328644
Number of successful extensions: 388292
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4205
Number of HSP's successfully gapped in prelim test: 448
Number of HSP's that attempted gapping in prelim test: 382933
Number of HSP's gapped (non-prelim): 5496
length of query: 226
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 89
effective length of database: 9,144,741,214
effective search space: 813881968046
effective search space used: 813881968046
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)