BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036464
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 33/177 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+P E G
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 106 GLGGKAIYI--------------GKCLG----------FY------TEQSAVINYLDKFV 135
GL GKA+YI K LG +Y Q A+++ L + V
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 136 SEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
S+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++ N
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 33/174 (18%)
Query: 46 LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
+++E+ ++ +I+T LD +L GGI R TE G G GKTQL QL+VNVQ+P E G
Sbjct: 79 VKKERXNVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 106 GLGGKAIYI--------------GKCLG----------FY------TEQSAVINYLDKFV 135
GL GKA+YI K LG +Y Q A+++ L + V
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 136 SEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
S+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 37/189 (19%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
GT D +++ ++ RI+T LD +LGGGI + +TE+ G G GKTQL LAV
Sbjct: 95 GTFXRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVX 154
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEH---- 138
VQ+P E GGL G I+I F E+ V+ ++ F S H
Sbjct: 155 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLL 214
Query: 139 ---------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKK 180
+ VK++I+DS+ HFR ++ LA R + L+ L LA
Sbjct: 215 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 274
Query: 181 FSLALLEPN 189
+ +A+ N
Sbjct: 275 YDIAVFVTN 283
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G
Sbjct: 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQS---------------AVINYLDKFVSEH------------------ 138
++I F E+ I Y F S H
Sbjct: 63 MWIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 37/175 (21%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
++ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G
Sbjct: 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------ 138
I+I F E+ V+ ++ F S H
Sbjct: 63 IWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA++ E+++ + ITT + D +LGGGI +TE G GKTQL L V Q+
Sbjct: 90 TAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148
Query: 101 PVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD----- 140
P G GGK I+I F + AV++ Y + SEH+
Sbjct: 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDY 208
Query: 141 -----------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
K++IIDSI FR F +LA R + L+ + +L +++++++A+
Sbjct: 209 VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 268
Query: 187 EPNLAT 192
N T
Sbjct: 269 VTNQMT 274
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA++ E+++ + ITT + D +LGGGI +TE G GKTQL L V Q+
Sbjct: 90 TAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148
Query: 101 PVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD----- 140
P G GGK I+I F + AV++ Y + SEH+
Sbjct: 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDY 208
Query: 141 -----------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
K++IIDSI FR F +LA R + L+ + +L +++++++A+
Sbjct: 209 VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 268
Query: 187 EPNLAT 192
N T
Sbjct: 269 VTNQMT 274
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 63 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 122 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 182 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 242 NKLADLFNCVVLVTN 256
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 63 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 122 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 182 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 242 NKLADLFNCVVLVTN 256
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 7 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 65
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 66 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 125
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 126 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 185
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 186 NKLADLFNCVVLVTN 200
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 5 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 63
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 64 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 123
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 124 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 183
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 184 NKLADLFNCVVLVTN 198
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ D+L++ + ++ +++TS ++LD++LGGG+ + VTE GV G GKTQ+ Q VN
Sbjct: 60 GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 118
Query: 98 VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q P V G + KA+YI F E Q+ + N
Sbjct: 119 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 178
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + E ++K+V+IDS+ FR+ + LA R + L L
Sbjct: 179 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 238
Query: 175 MNLAKKFSLALLEPN 189
LA F+ +L N
Sbjct: 239 NKLADLFNCVVLVTN 253
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G TA D E L +TT +LD +LGGG+ +TE+ G GK+QL LAV
Sbjct: 64 GFVTAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 122
Query: 98 VQIPVEFGGLGGKAIYI 114
QIP++ GG GK +YI
Sbjct: 123 CQIPLDIGGGEGKCLYI 139
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
TA D E L +TT +LD +LGGG+ +TE+ G GK+QL LAV QI
Sbjct: 146 TAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI 204
Query: 101 PVEFGGLGGKAIYI 114
P++ GG GK +YI
Sbjct: 205 PLDIGGGEGKCLYI 218
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
+ITT +LD +L GGI +TE G GKTQ+ LAV Q+P++ GG GKA YI
Sbjct: 5 QITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
G ++ ++L++ Q S+ R++T +LD +L GGI + VTE G+ G GKTQ+ Q VN
Sbjct: 63 GFKSGVELLKQRQ-SVWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVN 121
Query: 98 VQIPVEF----------GGLGGKAIYIGKCLGFYTE-------------QSAVIN----- 129
+Q+ + KA+YI F E Q+ + N
Sbjct: 122 LQMREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
++ + ++K+VIIDS+ FR+ F LA R + L L
Sbjct: 182 AYNSDMQMLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
LA ++ +L N
Sbjct: 242 NKLADLYNCIVLVTN 256
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV-----NVQIPVEFGGLGGK 110
++T LD++LGGG +T++ G GKT L +Q + + E G +
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPER 61
Query: 111 AIYIGKCLGF----------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR 154
+ + + G + EQ VI L K V + +V++DSI H+R
Sbjct: 62 LVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVD--SNFALVVVDSITAHYR 119
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
R+ T +D IL GGI R V + G PG GKT Q N
Sbjct: 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant
T426n Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant
S431a Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant
T432a Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant
S431d Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
E +++A++ T D+I GG+ T + G G GKT IQ N
Sbjct: 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 62
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 21/104 (20%)
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGK 110
++R++T D D ++ GGI + G PG GKT + GL G
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK--------GLRDGDP 53
Query: 111 AIYIGKCLGFYTEQS--AVINYLDKF---VSEHKDVKVVIIDSI 149
IY+ TE+S ++I +F E+ + K++IID++
Sbjct: 54 CIYVT------TEESRDSIIRQAKQFNWDFEEYIEKKLIIIDAL 91
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL-KLMNLAKKFSL 183
YLD S K +V ID+ A +RHG+ + LS A K+ N+ K+ SL
Sbjct: 26 YLDSAASAQKPSQV--IDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASL 78
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 74 REVTEIGGVPGIGKTQLGIQLA 95
++V I G G+GK+QL IQLA
Sbjct: 2 KKVIVIAGTTGVGKSQLSIQLA 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,331,232
Number of Sequences: 62578
Number of extensions: 191329
Number of successful extensions: 585
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 94
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)