BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036464
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana
GN=RAD51C PE=1 SV=2
Length = 363
Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)
Query: 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
ME +LP+S + RGKLISAGYT LSSI S SSSD++R
Sbjct: 22 MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81
Query: 38 ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82 SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
IQL+VNVQIP E GGLGGKAIYI F
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200
Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260
Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
RTRVLS +ALK M LAKKFSLA++ N TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292
>sp|Q924H5|RA51C_MOUSE DNA repair protein RAD51 homolog 3 OS=Mus musculus GN=Rad51c PE=2
SV=1
Length = 366
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S RGKL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVGYPLSPAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGTSVANEKCTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CL-------GFYTEQS- 125
QL +QLAV+VQIP FGG+ G+A++I C+ G +TE+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEH 183
Query: 126 ----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
A + L F+S+H V++VIID IAF FRH
Sbjct: 184 QKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 EDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>sp|Q8R2J9|RA51C_CRIGR DNA repair protein RAD51 homolog 3 OS=Cricetulus griseus GN=RAD51C
PE=2 SV=1
Length = 366
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 84/276 (30%)
Query: 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
E+ P+S T R KL++AG+ + + S++S+ + A + LQ
Sbjct: 4 ELVSFPLSPTVRVKLVAAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDK 63
Query: 48 -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
E++ + I T C+ LDNILGGGI + TE+ GVPG+GKT
Sbjct: 64 PRCAGASVAGKKYTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123
Query: 89 QLGIQLAVNVQIPVEFGGLGGKAIYI---------------GKCL--------------- 118
QL +QLAV+VQIP FGG+ G+A++I C+
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEH 183
Query: 119 -----GF----------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
GF YTE A + L F+S H V++VIID IA FRH
Sbjct: 184 QKALEGFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDL 243
Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
DL+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279
>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1
SV=1
Length = 376
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
P+S R KL+SAG+ + + S++S+
Sbjct: 17 FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 76
Query: 38 GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
GT TA ++L++E + I T C+ LD+ILGGG+ + TEI G PG+GKTQL
Sbjct: 77 GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 135
Query: 92 IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
+QLAV+VQIP FGG+ G+A++I
Sbjct: 136 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 195
Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
+C + TE A + L F+SEH V++VI+D IAF FRH D
Sbjct: 196 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 254
Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
L+LRTR+L+G+A ++++LA LA++ N TT
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 288
>sp|Q54PJ7|RA51C_DICDI DNA repair protein RAD51 homolog 3 OS=Dictyostelium discoideum
GN=rad51c PE=3 SV=1
Length = 381
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)
Query: 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+A D+L + ++ I T C+++D +L GG +++TEI GVPGIGKT + QL VN I
Sbjct: 49 SALDLLIQGRDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSI 108
Query: 101 PVEFGGLGGKAIYIG---------------------KC---------------------- 117
P + GG+ GKAIYI +C
Sbjct: 109 PFDLGGVQGKAIYIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNS 168
Query: 118 -----LGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172
+ Y E ++I+ L F+ ++KDVK++++DSI + FR F D+ LRTR L +A
Sbjct: 169 IYYYRVYHYIEIISLIHQLPLFLEKNKDVKLIVVDSITYPFRCDFKDMGLRTRSLLSLAQ 228
Query: 173 KLMNLAKKFSLALLEPNLATT---ANLAESCL 201
LMN+A +++LA++ N TT N ES L
Sbjct: 229 NLMNIATRYNLAVVVMNQVTTKISPNQKESIL 260
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESL----------------- 53
KLI AGY+SL ++ AS D+S TA +++E +E+L
Sbjct: 27 KLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRIIKEAREALDIRFKTALEVKKERINT 86
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGGI R +TE+ G G GKTQL QL+VNVQ+P+E GGLGGKA+Y
Sbjct: 87 KKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVY 146
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I K +G +Y Q A+++ L + +S+ +K+
Sbjct: 147 IDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKL 206
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR F +LA+R + L+ +L+ LA+ + LA++ N
Sbjct: 207 VIVDSVTSHFRAEFPGRENLAVRQQKLNKHLHQLVRLAEMYDLAVIITN 255
>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1
Length = 324
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 54/230 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQES 52
KL AGY++L SI AS D+S R + A D L ++E+ S
Sbjct: 26 NKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIKEARDALDIRFKTALEIEQERAS 85
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT LD +LGGGI R +TE+ G G GKTQ+ Q++VNVQ+P E GGL GKA+
Sbjct: 86 VKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKAL 145
Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVK 142
YI F TE Q A++ L +++ +K
Sbjct: 146 YIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIK 205
Query: 143 VVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V++DSI HFR G +LA+R + L+ +L+ LA+ + LA++ N
Sbjct: 206 LVVVDSITSHFRAEYSGRENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTN 255
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+YI F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|C4KIT6|RADA_SULIK DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|C3MZK6|RADA_SULIA DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.27) GN=radA PE=3 SV=1
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253
Query: 188 PN 189
N
Sbjct: 254 TN 255
>sp|Q55075|RADA_SULSO DNA repair and recombination protein RadA OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=radA PE=1 SV=2
Length = 324
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 55/239 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
++ LP IS T KLI AGY+SL ++ AS D+S + + A D+
Sbjct: 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73
Query: 46 -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
+++E+ ++ +I+T LD +L GGI R +TE G G GKTQL QL+VNVQ+
Sbjct: 74 KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133
Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
P E GGL GKA+YI K LG +Y Q A+++
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193
Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
L + VS+ +K++++DS+ HFR G +LA+R + L+ +L LA+ + +A++
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
+++ LP + T KL+ AGYT+L +I +A+ ++S+ T
Sbjct: 10 DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69
Query: 40 -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+TA+D L+ E ++ +ITT +LD +LGGGI + +TE+ G G GKTQ+ QL+VNV
Sbjct: 70 FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
Q+P + GGL GKA+Y+ F E Q A++
Sbjct: 129 QLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188
Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
+ L V ++ ++K+V++DS+ HFR F +LA+R ++L+ +LM LA F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247
Query: 186 L 186
+
Sbjct: 248 V 248
>sp|Q4JAT5|RADA_SULAC DNA repair and recombination protein RadA OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=radA PE=3 SV=1
Length = 321
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 54/229 (23%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESL----------------- 53
KL+ AGY+SL ++ A+ D+S TA +++E +E+L
Sbjct: 24 KLVEAGYSSLEAVAVATPQDLSVAAGIPQTTAQRIIKEAREALDIRFKTALEVKKERMNT 83
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGGI R +TE G G GKTQL Q++++VQ+P E GGL GKA+Y
Sbjct: 84 KKITTGSQALDGLLGGGIETRTMTEFFGEFGSGKTQLCHQISISVQLPQEKGGLNGKAVY 143
Query: 114 IGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVKV 143
I F E Q A+++ L + +++ +K+
Sbjct: 144 IDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKL 203
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+I+DSI HFR G +LA+R + L+ +L+ LA+ + +A++ N
Sbjct: 204 IIVDSITSHFRAEYPGRENLAVRQQKLNKHLHQLVRLAEMYDIAVIITN 252
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 57/231 (24%)
Query: 15 KLISAGYTSLSSICSAS------SSDISRGT-----------------QTAWDMLQEEQE 51
KLISAGY SL I SAS ++DI T +TA ++L+E Q+
Sbjct: 26 KLISAGYDSLIKIASASVEELMEAADIGEATARKIIEAAMERLGLLEFKTAEEVLEERQK 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ ARITT +LD++LGGGI +TE G G GKTQ+G QLAV+VQ+P E GGL GKA
Sbjct: 86 T-ARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKA 144
Query: 112 IYIGKCLGFYTE-------------QSAVIN--YLDKFVSEHK---------------DV 141
+YI F E + A+ N ++ F ++H+ +
Sbjct: 145 VYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQMLAARKAEELIRKGEPI 204
Query: 142 KVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K++++DS+ FR + LA R L L+ +A+ +++A+ N
Sbjct: 205 KLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLRIAELYNVAIYVTN 255
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------QTAWDML----------QEEQESL 53
KL +AGY S SI A + +++ T + A ML ++E+ ++
Sbjct: 31 KLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIENARKMLGITFKTAREVKQERSNI 90
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGG+ + +TE G G GKTQ+ QL+VNVQ+ E GGL G+A+Y
Sbjct: 91 GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVY 150
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I + LG +Y Q A+++ L FV ++ DV++
Sbjct: 151 IDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVRL 209
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR G LA R + L+ +LM LA+ +++A++ N
Sbjct: 210 VILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTN 258
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 55/229 (24%)
Query: 15 KLISAGYTSLSSICSASSSDISRGT-----------QTAWDML----------QEEQESL 53
KL +AGY S SI A + +++ T + A ML ++E+ ++
Sbjct: 31 KLEAAGYLSAWSIVVARAEELAERTGLPVLTVQKIIENARKMLGITFKTAREVKQERLNI 90
Query: 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
+ITT LD +LGGG+ + +TE G G GKTQ+ QL+VNVQ+ E GGL G+A+Y
Sbjct: 91 GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVY 150
Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
I + LG +Y Q A+++ L FV ++ DV++
Sbjct: 151 IDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKN-DVRL 209
Query: 144 VIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
VI+DS+ HFR G LA R + L+ +LM LA+ +++A++ N
Sbjct: 210 VILDSVTSHFRAEYPGREHLAERQQKLNSHLHQLMRLAEAYNVAVVVTN 258
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTEI G G GKTQL QLAV VQ+P E GGL
Sbjct: 94 ERRKKIRRISTGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGL 153
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G ++Q+ I Y + S+H+
Sbjct: 154 GAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQ 213
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 214 HNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++++ RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 91 ERRKTIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGL 150
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G +Q+ I Y + S+H+
Sbjct: 151 GAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQ 210
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 211 NNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 264
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 88/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 91 ERRKKIRRISTGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGL 150
Query: 108 GGKAIY--------------IGKCLGFYTEQS-AVINYLDKFVSEHK------------- 139
G KAIY I K G +Q+ I Y + S+H+
Sbjct: 151 GAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQ 210
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++I+DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 211 HNVALLIVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 264
>sp|A8AB83|RADA_IGNH4 DNA repair and recombination protein RadA OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3
SV=1
Length = 327
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 58/242 (23%)
Query: 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSD-------------ISRGTQTAWDM--- 45
V++LP + + KLI AGY ++ ++ A+ + I R + D+
Sbjct: 14 VAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAIGIPLTTAQKIIRAARQMLDIRFR 73
Query: 46 ----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
++ E+ +L +ITT +LD++LGGGI + +TE G G GK+QL Q +VNVQ+P
Sbjct: 74 TAKEVKLERMNLRKITTGSKNLDDLLGGGIETKTITEFFGEFGSGKSQLCHQASVNVQLP 133
Query: 102 VEFGGLG-----GKAIYI--------------GKCLGFYTEQSA-VINYLDKFVSEHK-- 139
+E GGL KA+Y+ KCLG +Q I Y+ S+H+
Sbjct: 134 LEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMA 193
Query: 140 ------------DVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLA 184
+VK++++DS+ HFR G +LA+R + L+ +L LA+ ++ A
Sbjct: 194 IVEELFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLGKLAEVYNTA 253
Query: 185 LL 186
++
Sbjct: 254 VI 255
>sp|O27436|RADA_METTH DNA repair and recombination protein RadA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=radA PE=3 SV=1
Length = 311
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 57/245 (23%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGTQ------------------- 40
+E+ LP + A KL AG+ + + +A++ ++S +
Sbjct: 2 VELEDLPNVGAKTAQKLRDAGFGDMMRLATATAKELSVKAEIGEGVAEKVIEAARRAEKI 61
Query: 41 ---TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
TA+D++ E ++ + RITT LD ++GGGI + +TE+ G G GK+QL +LAV
Sbjct: 62 DFETAFDVM-ERRKDVGRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELAVT 120
Query: 98 VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL-------------- 131
VQ+P E GGL +A++I F E+ V+N +
Sbjct: 121 VQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILM 180
Query: 132 ----DKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLA 184
++ + E K++++VI+DS+ HFR +V LA R + L+ L N+A ++ A
Sbjct: 181 AEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQHLHTLQNIANTYNAA 240
Query: 185 LLEPN 189
+ N
Sbjct: 241 VFVTN 245
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 32/174 (18%)
Query: 48 EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
E ++ + RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P E GGL
Sbjct: 94 ERRKKIRRISTGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGL 153
Query: 108 GGKAIYIGKCLGFYTEQ-------------SAVIN--YLDKFVSEHK------------- 139
G KAIYI F E+ A+ N Y + S+H+
Sbjct: 154 GAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQ 213
Query: 140 -DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+V ++++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 214 HNVALIVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITN 267
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 53/229 (23%)
Query: 14 GKLISAGYTSLSSICSASSSDIS-------RGTQ---TAWDML-----------QEEQES 52
KL GY ++ + AS +++ R Q A ML E ++
Sbjct: 38 AKLKEKGYYTVRDVAYASVKELAEIVGSEERAQQIVEAARKMLGLHSFISALEVYERRKK 97
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI R VTE+ G G GKTQL QLAV VQ+P + GGLG KAI
Sbjct: 98 IRRISTGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAI 157
Query: 113 Y--------------IGKCLGFYTEQS-AVINYLDKFVSEHK--------------DVKV 143
Y I K G +Q+ I Y + ++H+ +V +
Sbjct: 158 YIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHNVAL 217
Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+++DS+ HFR F +LA R + L+ L+ LA + +A++ N
Sbjct: 218 LVVDSVIAHFRAEFPGRENLAERQQKLNKHIADLLRLADAYDVAVVVTN 266
>sp|Q9HMM4|RADA_HALSA DNA repair and recombination protein RadA OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=radA PE=3 SV=2
Length = 343
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ + S+ A+S+++S G TA D++Q E +E
Sbjct: 19 KLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAADVGGFETGATVLERREQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T + ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+GGL G+A+
Sbjct: 79 IGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAV 138
Query: 113 YIGKCLGFYTE--------------QSA-------------------VINYLDK------ 133
+I F E Q+A V +LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKG 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
SEH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
L + ++ A+L N
Sbjct: 259 HDLEKVGNLYNAAVLVTN 276
>sp|B0R7Y4|RADA_HALS3 DNA repair and recombination protein RadA OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=radA
PE=3 SV=1
Length = 343
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 83/258 (32%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
KL G+ + S+ A+S+++S G TA D++Q E +E
Sbjct: 19 KLRDNGFDAFQSLAVANSAELSNTADIGESTAADVIQAAREAADVGGFETGATVLERREQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++T + ++D++LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E+GGL G+A+
Sbjct: 79 IGKLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAV 138
Query: 113 YIGKCLGFYTE--------------QSA-------------------VINYLDK------ 133
+I F E Q+A V +LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKG 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
SEH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPN 189
L + ++ A+L N
Sbjct: 259 HDLEKVGNLYNAAVLVTN 276
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA++++ E +E + RITT LD ++GGGI + +TE+ G G GK+Q+ +L+V Q
Sbjct: 64 ETAFEVM-ERREDVGRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELSVTTQ 122
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVI---------NYLDK------FVSEHK----- 139
+PVE GGL G+ ++I F E+ I L K F S H+
Sbjct: 123 LPVEEGGLDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQILMAD 182
Query: 140 ----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
++K++IIDS+ HFR +V LA R + L+ L +A +++A+L
Sbjct: 183 KINELIQSGVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLHTLQTIANTYNVAVL 242
Query: 187 EPN 189
N
Sbjct: 243 ITN 245
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AGY+++ ++ AS S+++ G + D + E + S
Sbjct: 27 KLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANIGGFESGDKVLERRRS 86
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +ITT DLD +LGGG+ + +TE G G GKTQ+ QLAVNVQ+P + GGL G I
Sbjct: 87 VKKITTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVI 146
Query: 113 YIGKCLGFYTE---QSAVINYLD-------------------------------KFVSEH 138
I F E Q A LD K E
Sbjct: 147 IIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEG 206
Query: 139 KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ V+++I+DS+ HFR +V LA R + L+ LM + ++ A++ N
Sbjct: 207 RPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHDLMKFGELYNAAIVVTN 260
>sp|Q18EU1|RADA_HALWD DNA repair and recombination protein RadA OS=Haloquadratum walsbyi
(strain DSM 16790) GN=radA PE=3 SV=1
Length = 343
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ--------- 47
E+ LP + KL+ AG+ S +I AS +++S G TA D++
Sbjct: 5 ELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINAARDAADVG 64
Query: 48 ---------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
+ +E + +++ ++D +LGGGI + +TE+ G G GK+Q+ Q+AVNV
Sbjct: 65 GFETGAAVLQRREEIGKLSWKIPEVDELLGGGIETQSITEVYGEFGAGKSQVTHQMAVNV 124
Query: 99 QIPVEFGGLGGKAIYIGKCLGFYTEQ 124
Q+P E GGLGG AI++ F E+
Sbjct: 125 QLPPEHGGLGGAAIFVDSEDTFRPER 150
>sp|Q48328|RADA_HALVD DNA repair and recombination protein RadA OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=radA PE=3 SV=1
Length = 343
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 83/262 (31%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAWD------------------MLQEEQES 52
KL+ +GY S SI AS ++S G+ TA D M+ E ++
Sbjct: 19 KLVESGYDSYQSIAVASPGELSNKADIGSSTASDIINAARDAADVGGFETGSMVLERRQQ 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++ ++D +LGGG+ + +TE+ G G GK+Q+ QLAVNVQ+P E GGLGG I
Sbjct: 79 IGKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLAVNVQLPPEQGGLGGGCI 138
Query: 113 YIGKCLGFYTE---------------------------------QSAVINYLDK------ 133
+I F E ++ V ++LDK
Sbjct: 139 FIDSEDTFRPERIDDMVRGLEDEALEATLDDREMEGSIDDEETIKALVDDFLDKIHVAKA 198
Query: 134 ---------------FVSEHKD----VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIA 171
EH+D V+++ +DS+ HFR +V +LA R + L+
Sbjct: 199 FNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAEYVGRGELAERQQKLNKHL 258
Query: 172 LKLMNLAKKFSLALLEPNLATT 193
LM + F+ +L N ++
Sbjct: 259 HDLMRIGDLFNTGILVTNQVSS 280
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQES 52
KL AG+ +L +I AS ++ GT D +++ES
Sbjct: 54 KLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFMRADEYLKKRES 113
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 114 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 173
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 174 WIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 233
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 234 KPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVTN 287
>sp|Q12UG7|RADA_METBU DNA repair and recombination protein RadA OS=Methanococcoides
burtonii (strain DSM 6242) GN=radA PE=3 SV=1
Length = 325
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 62/206 (30%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+T++ +I AS ++++ G TA D++ E ++
Sbjct: 19 KLKDAGFTTIEAIAVASPAELANSAEIGESTAAKIINAARQSADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ +++T C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+P E GGLGG I
Sbjct: 79 VGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIAHQLAVNVQLPPEQGGLGGSVI 138
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEHK------------ 139
I F E+ A I+ F S H+
Sbjct: 139 MIDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELAN 198
Query: 140 -------DVKVVIIDSIAFHFRHGFV 158
VK++I+DS+ HFR ++
Sbjct: 199 ELKNTEMPVKLLIVDSLTAHFRAEYI 224
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 102/234 (43%), Gaps = 59/234 (25%)
Query: 15 KLISAGYTSLSSICSASSSD------ISRGT-----QTAW-----------DMLQEEQES 52
KL AGY +L +I AS + IS GT Q A D +++ +
Sbjct: 50 KLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT 109
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ RI+T LD +LGGGI + +TE+ G G GKTQL LAV VQ+P E GGL G I
Sbjct: 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI 169
Query: 113 YIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------- 138
+I F E+ V+ ++ F S H
Sbjct: 170 WIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD 229
Query: 139 KDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALLEPN 189
+ VK++I+DS+ HFR ++ LA R + L+ L LA + +A+ N
Sbjct: 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283
>sp|Q8PZN5|RADA_METMA DNA repair and recombination protein RadA OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=radA PE=3 SV=2
Length = 325
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 62/206 (30%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTA------------------WDMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+ E GGLGG I
Sbjct: 79 VGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSVI 138
Query: 113 YIGKCLGFYTEQ-SAVINYLDK--------------------FVSEH------------- 138
I F E+ + ++N L + + S H
Sbjct: 139 IIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLAN 198
Query: 139 ------KDVKVVIIDSIAFHFRHGFV 158
K V+++I+DS+ HFR +V
Sbjct: 199 ELKEMGKPVRLLIVDSLMAHFRAEYV 224
>sp|Q9FKM5|XRCC3_ARATH DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3
PE=1 SV=1
Length = 304
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
++TT C LD L GGI C +TEI G GKTQL +QL++ Q+P+ GGL G ++Y+
Sbjct: 20 KLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYL 79
Query: 115 GKCLGF-------------YTEQSAVINY-------------------------LDKFVS 136
F + S NY +D FV
Sbjct: 80 HSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFVG 139
Query: 137 EHK---DVKVVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K +K++++DS+A FR F DL R+ + I+ KL LA KF LA++ N
Sbjct: 140 NSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFDLAIVITN 199
Query: 190 LAT 192
T
Sbjct: 200 QVT 202
>sp|A5UMW0|RADA_METS3 DNA repair and recombination protein RadA OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3
SV=1
Length = 311
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 34/183 (18%)
Query: 40 QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
+TA+D+L E + + I+ ++++GGGI + +TE+ G G GK+Q+ +LAV VQ
Sbjct: 64 ETAYDVL-ERRRDVGHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELAVTVQ 122
Query: 100 IPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVIN 129
+P E GGL G+ ++I F E Q +
Sbjct: 123 LPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAE 182
Query: 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
+++ + + ++K+VI+DS+ HFR +V LA+R + L+ L +A +++A+
Sbjct: 183 KINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHALQQIANTYNVAVF 242
Query: 187 EPN 189
N
Sbjct: 243 ITN 245
>sp|Q46A31|RADA_METBF DNA repair and recombination protein RadA OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=radA PE=3 SV=1
Length = 325
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 65/240 (27%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDIVLERRKM 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQL Q AVNVQ+ E GGL G I
Sbjct: 79 VGKLTTGCMEFDEMMGGGIETQAITELYGEFGSGKTQLAHQFAVNVQMDREHGGLNGSVI 138
Query: 113 YIGKCLGFYTEQSAV---------------------INYLDKFVSEH------------- 138
I F E+ A I+ + S H
Sbjct: 139 IIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQILLVDSATDLAN 198
Query: 139 ------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
K V+++I+DS+ HFR +V LA R + L+ L+ F+ +++ N
Sbjct: 199 ELREMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHMHGLLRFGDLFNASVVVTN 258
>sp|A2SR54|RADA_METLZ DNA repair and recombination protein RadA OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=radA
PE=3 SV=1
Length = 329
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
+++ ++P + +L AGY ++ SI +A+ D++
Sbjct: 4 LDIEEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAAREMADI 63
Query: 38 -GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96
G +T D+L Q+ L ++ T ++D + GGG+ + +TE+ G G GK+Q+ QLAV
Sbjct: 64 GGFKTGTDILARRQDVL-KLKTLVPEIDELFGGGLETQAITELYGEFGSGKSQIAHQLAV 122
Query: 97 NVQIPVEFGGLGGKAIYIGKCLGFYTEQ 124
N Q+P E GGLGG +YI F E+
Sbjct: 123 NCQLPQELGGLGGSCLYIDTENTFRPER 150
>sp|Q39009|DMC1_ARATH Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana
GN=LIM15 PE=1 SV=2
Length = 344
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D L + ++S+ +ITT C LD++LGGGI +TE G
Sbjct: 76 KVDKICEAAEKIVNFGYMTGSDALIK-RKSVVKITTGCQALDDLLGGGIETSAITEAFGE 134
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQL L V Q+P G GK YI F ++ AV++
Sbjct: 135 FRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDN 194
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DSI FR F +LA R + L+ +
Sbjct: 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQM 254
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L+ +A++F++A+ N
Sbjct: 255 LSRLIKIAEEFNVAVYMTN 273
>sp|Q8TK71|RADA_METAC DNA repair and recombination protein RadA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=radA PE=3 SV=1
Length = 325
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 22/132 (16%)
Query: 15 KLISAGYTSLSSICSASSSDISR----GTQTAW------------------DMLQEEQES 52
KL AG+ ++ ++ AS S+++ G TA D++ E ++
Sbjct: 19 KLKEAGFNTVEAVAVASPSELATTAEIGESTAAKIINSARQAADIGGFETGDLVLERRKL 78
Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
+ ++TT C + D ++GGGI + +TE+ G G GKTQ+ QLAVNVQ+ E GGL G I
Sbjct: 79 VGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLAVNVQMDKEHGGLDGSVI 138
Query: 113 YIGKCLGFYTEQ 124
I F E+
Sbjct: 139 IIDTENTFRPER 150
>sp|Q08DH8|XRCC3_BOVIN DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1
Length = 341
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 45/202 (22%)
Query: 38 GTQTAWDMLQEE---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQL 94
G TA +L++E E R++ C LD +L GG+ +TE+ G GKTQL +QL
Sbjct: 61 GVCTALHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
Query: 95 AVNVQIPVEFGGLGGKAIYIGKCLGF---------------------------------Y 121
+ VQ+P GGLG A+Y+ F +
Sbjct: 121 CLAVQLPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIF 180
Query: 122 TEQSAVINYLDKFVSEHKDV-------KVVIIDSIAFHFRHGF--VDLALRTRVLSGIAL 172
E +A ++ L + V E V ++V+IDS+A FR F LALR + L +
Sbjct: 181 IEHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDGAALALRAQRLLALGA 240
Query: 173 KLMNLAKKFSLALLEPNLATTA 194
+L L+ F +L N T A
Sbjct: 241 ELRRLSCAFRSPVLCVNQVTEA 262
>sp|P37384|DMC1_LILLO Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum
GN=LIM15 PE=2 SV=1
Length = 349
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 33/199 (16%)
Query: 23 SLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82
+ IC A+ ++ G T D+L + ++S+ RITT LD +LGGGI ++TE G
Sbjct: 81 KVDKICEAAEKLVNVGYITGSDVLLK-RKSVIRITTGSQALDELLGGGIETLQITEAFGE 139
Query: 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN- 129
GKTQ+ L V+ Q+PV G GK YI F ++ SAV++
Sbjct: 140 FRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAVLDN 199
Query: 130 --YLDKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGI 170
Y + EH+ +++I+DS+ FR F +LA R + L+ +
Sbjct: 200 IIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 259
Query: 171 ALKLMNLAKKFSLALLEPN 189
+L +A++F++A+ N
Sbjct: 260 LSRLTKIAEEFNVAVYMTN 278
>sp|Q6L126|RADA_PICTO DNA repair and recombination protein RadA OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=radA PE=3 SV=1
Length = 323
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 56/209 (26%)
Query: 15 KLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQE 51
KL +GY + +I AS D++ +T ++L + +E
Sbjct: 26 KLRESGYDDIMTIAVASPKDLAEISGIAEGAAIKIINAARKYADVGNFETGEEILNKRKE 85
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
+ ++TT ++LDN+LGGG+ + +TE G G GKTQ+ QLAVN +PVE G
Sbjct: 86 -IKKLTTGSSNLDNLLGGGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDV 144
Query: 112 IYIGKCLGFYTE---QSAVINYLDK------------FVSEHK--------------DVK 142
+ I F E Q A LD + S H+ ++
Sbjct: 145 LIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADMAREYKIR 204
Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLS 168
++I+DS+ HFR +V LA R ++L+
Sbjct: 205 LLIVDSLTSHFRSEYVGRGSLAERQQLLN 233
>sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1
SV=2
Length = 384
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
S A ++T+ + LD L GG+ C +TEI G PG GKTQ I +++ +P GGL G
Sbjct: 79 SPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAV 138
Query: 112 IYIGKCLGFYTEQ----------------------------------SAVINYLDKFVSE 137
+YI F E+ V+ ++ E
Sbjct: 139 VYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEE 198
Query: 138 --HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190
K +K+VI+DS+A R F +L R + L+ A L LA++FS+ ++ N
Sbjct: 199 IISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQ 258
Query: 191 ATT 193
TT
Sbjct: 259 ITT 261
>sp|P25301|RAD57_YEAST DNA repair protein RAD57 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD57 PE=1 SV=1
Length = 460
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
TT+ +D +LGGGI +TEI G GK+QL +QLA++VQ+ GGLGGK +YI
Sbjct: 100 FTTADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYIT 159
Query: 116 --------------------KCLGFYTEQSAVINYLDKFVSEH--------------KDV 141
+ LG ++ D EH +
Sbjct: 160 TEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSKGSI 219
Query: 142 KVVIIDSIAFHFRHGFVDLALR-----TRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
K+VIIDSI+ H R + + R L +A KL LA +SL+++ N L
Sbjct: 220 KLVIIDSISHHLRVELQNKSFRESQENKNYLDRMAEKLQILAHDYSLSVVVANQVGDKPL 279
Query: 197 AESCLTCLRDSGSRKAVAAAAAQLGFVL 224
A S + R V QLG+++
Sbjct: 280 ANSPV------AHRTYVTDYDYQLGWLV 301
>sp|O35719|RA51B_MOUSE DNA repair protein RAD51 homolog 2 OS=Mus musculus GN=Rad51b PE=2
SV=2
Length = 350
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 6 LPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESL--ARITTSCADL 63
L +S + K+ Y + + S + QTA+++ L A ++T+ L
Sbjct: 31 LSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYELKTRRSAHLSPAFLSTTLCAL 90
Query: 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE 123
D L GG+ C +TEI G PG GKTQ I ++V +P GGL G +YI F E
Sbjct: 91 DEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAE 150
Query: 124 QSAVI---NYLDKFVSEH---------------------------------KDVKVVIID 147
+ I + F +E K VK+VI+D
Sbjct: 151 RLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVD 210
Query: 148 SIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
SIA R F ++ R + L A L LA +FS+ ++ N TT
Sbjct: 211 SIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITT 261
>sp|P25453|DMC1_YEAST Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DMC1 PE=1 SV=1
Length = 334
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 32/166 (19%)
Query: 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
++T LD+ILGGGI +TE+ G GKTQ+ L V Q+P E GG GK YI
Sbjct: 96 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYID 155
Query: 116 KCLGFYTEQS---------------AVINYLDKFVSEHK--------------DVKVVII 146
F E+ A ++Y SEH+ D +++++
Sbjct: 156 TEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVV 215
Query: 147 DSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
DSI +FR + +L+ R + L+ KL LA++F++A+ N
Sbjct: 216 DSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTN 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,249,540
Number of Sequences: 539616
Number of extensions: 2777800
Number of successful extensions: 10248
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 9997
Number of HSP's gapped (non-prelim): 310
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)