Query 036464
Match_columns 226
No_of_seqs 234 out of 1869
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02238 recomb_DMC1 meiotic 100.0 2.7E-40 5.8E-45 283.3 21.8 193 3-197 4-251 (313)
2 PLN03187 meiotic recombination 100.0 2E-40 4.3E-45 286.2 21.1 194 3-198 34-282 (344)
3 PTZ00035 Rad51 protein; Provis 100.0 1.6E-38 3.4E-43 275.1 22.7 192 4-197 27-273 (337)
4 PLN03186 DNA repair protein RA 100.0 5.8E-38 1.2E-42 271.1 20.5 212 4-217 32-300 (342)
5 TIGR02239 recomb_RAD51 DNA rep 100.0 1.5E-37 3.2E-42 267.0 21.5 214 2-217 3-274 (316)
6 KOG1434 Meiotic recombination 100.0 4.1E-39 8.8E-44 260.6 7.9 190 8-198 28-272 (335)
7 PF08423 Rad51: Rad51; InterP 100.0 4.9E-36 1.1E-40 250.9 16.9 176 38-215 3-213 (256)
8 PRK04301 radA DNA repair and r 100.0 6.5E-35 1.4E-39 251.6 22.2 196 2-198 7-259 (317)
9 TIGR02236 recomb_radA DNA repa 100.0 2.9E-34 6.3E-39 246.9 22.7 194 3-197 1-252 (310)
10 KOG1564 DNA repair protein RHP 100.0 1.3E-31 2.7E-36 219.9 12.7 195 1-196 1-267 (351)
11 cd01123 Rad51_DMC1_radA Rad51_ 100.0 3.8E-28 8.3E-33 200.7 15.6 142 56-197 1-175 (235)
12 COG0468 RecA RecA/RadA recombi 100.0 2.3E-27 4.9E-32 199.0 17.7 152 51-210 37-214 (279)
13 cd01393 recA_like RecA is a b 99.9 1.3E-26 2.8E-31 190.4 15.8 142 56-198 1-175 (226)
14 PRK09361 radB DNA repair and r 99.9 1.1E-25 2.4E-30 185.0 16.9 137 54-198 3-168 (225)
15 cd00983 recA RecA is a bacter 99.9 1.7E-25 3.7E-30 191.6 15.8 150 51-209 31-209 (325)
16 cd01394 radB RadB. The archaea 99.9 2.3E-25 5E-30 182.3 15.9 134 56-197 1-163 (218)
17 PRK09354 recA recombinase A; P 99.9 2.5E-25 5.4E-30 191.9 16.1 149 52-209 37-214 (349)
18 TIGR02012 tigrfam_recA protein 99.9 5.6E-25 1.2E-29 188.3 17.1 151 51-210 31-210 (321)
19 COG1066 Sms Predicted ATP-depe 99.9 3.5E-25 7.6E-30 190.9 13.2 135 51-195 70-223 (456)
20 TIGR02237 recomb_radB DNA repa 99.9 8.6E-24 1.9E-28 171.8 15.3 127 63-197 1-155 (209)
21 cd01121 Sms Sms (bacterial rad 99.9 1.1E-23 2.4E-28 184.5 14.1 135 51-194 59-212 (372)
22 TIGR00416 sms DNA repair prote 99.9 2.4E-23 5.1E-28 186.9 14.2 135 51-194 71-224 (454)
23 PRK11823 DNA repair protein Ra 99.9 2.8E-23 6E-28 186.3 14.1 135 51-194 57-210 (446)
24 KOG1433 DNA repair protein RAD 99.9 1E-22 2.2E-27 173.5 16.0 184 8-198 32-261 (326)
25 PRK09519 recA DNA recombinatio 99.9 1.3E-22 2.8E-27 189.7 16.7 139 51-198 36-203 (790)
26 PHA02542 41 41 helicase; Provi 99.9 6.2E-22 1.3E-26 178.2 15.9 158 52-217 168-379 (473)
27 TIGR03600 phage_DnaB phage rep 99.9 1.6E-21 3.5E-26 174.3 15.9 153 53-214 174-380 (421)
28 PF00154 RecA: recA bacterial 99.9 1.6E-21 3.6E-26 166.6 14.7 150 51-209 29-207 (322)
29 PRK05748 replicative DNA helic 99.9 1.9E-21 4E-26 175.1 15.0 156 52-214 182-391 (448)
30 PRK09165 replicative DNA helic 99.9 1.1E-21 2.5E-26 178.1 13.6 160 52-213 196-418 (497)
31 PF03796 DnaB_C: DnaB-like hel 99.9 1.1E-21 2.3E-26 164.7 12.2 152 55-214 1-206 (259)
32 TIGR03878 thermo_KaiC_2 KaiC d 99.9 2.3E-21 5.1E-26 162.7 14.0 126 54-193 2-177 (259)
33 TIGR00665 DnaB replicative DNA 99.9 2E-21 4.4E-26 174.3 14.2 154 52-214 174-381 (434)
34 TIGR03877 thermo_KaiC_1 KaiC d 99.9 3.1E-21 6.7E-26 160.0 14.0 123 55-193 2-172 (237)
35 PRK08006 replicative DNA helic 99.9 2.3E-21 5E-26 174.7 14.2 153 53-213 204-411 (471)
36 PRK08760 replicative DNA helic 99.9 2.6E-21 5.7E-26 174.7 13.9 151 53-212 209-413 (476)
37 PRK08506 replicative DNA helic 99.9 7.4E-21 1.6E-25 171.9 16.7 153 53-214 172-378 (472)
38 PRK04328 hypothetical protein; 99.9 5.4E-21 1.2E-25 159.7 14.1 126 54-193 3-174 (249)
39 PRK05595 replicative DNA helic 99.9 3.8E-21 8.3E-26 172.9 13.1 153 53-214 181-387 (444)
40 PRK07004 replicative DNA helic 99.9 6.4E-21 1.4E-25 171.7 14.0 152 53-212 193-398 (460)
41 PRK06321 replicative DNA helic 99.9 5.1E-21 1.1E-25 172.4 12.8 154 53-213 206-414 (472)
42 cd01122 GP4d_helicase GP4d_hel 99.9 6.8E-21 1.5E-25 160.7 12.6 156 53-218 10-222 (271)
43 PRK08840 replicative DNA helic 99.9 1.1E-20 2.5E-25 169.9 14.3 153 53-213 197-404 (464)
44 PRK06904 replicative DNA helic 99.8 2.3E-20 5E-25 168.4 14.2 154 52-213 200-409 (472)
45 PRK05636 replicative DNA helic 99.8 2E-20 4.3E-25 169.8 13.7 153 53-213 245-450 (505)
46 PRK06749 replicative DNA helic 99.8 4.3E-20 9.3E-25 164.9 14.2 154 52-213 165-375 (428)
47 PF06745 KaiC: KaiC; InterPro 99.8 1.8E-20 3.8E-25 154.3 10.6 125 56-193 1-162 (226)
48 cd00984 DnaB_C DnaB helicase C 99.8 1.6E-20 3.4E-25 155.8 9.8 143 62-213 2-198 (242)
49 PRK06067 flagellar accessory p 99.8 2.2E-19 4.8E-24 148.6 14.2 127 52-192 3-165 (234)
50 PRK07773 replicative DNA helic 99.8 1.1E-19 2.4E-24 175.1 13.8 150 53-211 197-400 (886)
51 TIGR02655 circ_KaiC circadian 99.8 2E-19 4.4E-24 163.2 14.0 128 52-194 241-401 (484)
52 TIGR03881 KaiC_arch_4 KaiC dom 99.8 3.8E-19 8.2E-24 146.5 14.0 125 55-192 1-166 (229)
53 COG0305 DnaB Replicative DNA h 99.8 3E-19 6.5E-24 157.5 14.1 151 53-212 176-380 (435)
54 PF13481 AAA_25: AAA domain; P 99.8 1.4E-19 3E-24 145.1 9.8 138 53-194 11-191 (193)
55 PRK05973 replicative DNA helic 99.8 3.8E-19 8.2E-24 146.6 11.3 128 63-206 54-211 (237)
56 PRK09302 circadian clock prote 99.8 1.4E-18 3E-23 158.9 13.9 128 52-194 251-411 (509)
57 PRK09302 circadian clock prote 99.8 2.3E-18 4.9E-23 157.5 13.0 132 51-193 8-178 (509)
58 TIGR03880 KaiC_arch_3 KaiC dom 99.8 6.3E-18 1.4E-22 138.9 14.1 123 59-193 1-155 (224)
59 COG0467 RAD55 RecA-superfamily 99.7 3.9E-17 8.5E-22 137.2 13.2 129 53-193 2-172 (260)
60 TIGR02655 circ_KaiC circadian 99.7 2.7E-17 5.8E-22 149.4 12.7 129 55-194 2-169 (484)
61 COG2874 FlaH Predicted ATPases 99.7 8.6E-16 1.9E-20 122.7 13.6 125 54-192 8-168 (235)
62 PRK08533 flagellar accessory p 99.7 7.9E-16 1.7E-20 127.1 12.7 126 53-193 3-164 (230)
63 cd01125 repA Hexameric Replica 99.7 2.7E-15 5.8E-20 124.5 13.7 139 74-220 1-186 (239)
64 KOG2859 DNA repair protein, me 99.5 3E-13 6.5E-18 108.3 12.0 123 71-193 35-211 (293)
65 cd01120 RecA-like_NTPases RecA 99.5 1.4E-13 3E-18 106.2 9.5 117 76-198 1-143 (165)
66 COG3598 RepA RecA-family ATPas 99.4 1.7E-12 3.8E-17 109.4 12.4 127 67-198 82-248 (402)
67 cd01124 KaiC KaiC is a circadi 99.4 3.7E-12 7.9E-17 101.3 11.9 103 76-194 1-142 (187)
68 KOG2373 Predicted mitochondria 99.2 4.2E-11 9.1E-16 102.1 6.7 150 58-217 258-449 (514)
69 COG1120 FepC ABC-type cobalami 99.0 3.5E-09 7.6E-14 88.2 11.7 43 140-191 156-198 (258)
70 smart00382 AAA ATPases associa 98.9 8.1E-09 1.8E-13 76.6 9.9 107 74-191 2-125 (148)
71 COG1126 GlnQ ABC-type polar am 98.9 1.1E-08 2.5E-13 82.4 10.2 44 139-192 153-196 (240)
72 PF00004 AAA: ATPase family as 98.9 4.2E-08 9.1E-13 73.0 12.7 111 77-196 1-116 (132)
73 KOG0744 AAA+-type ATPase [Post 98.9 9E-09 2E-13 87.4 9.5 125 71-197 174-312 (423)
74 COG1124 DppF ABC-type dipeptid 98.9 9.7E-09 2.1E-13 84.1 9.3 49 139-196 158-206 (252)
75 PRK04296 thymidine kinase; Pro 98.9 2.3E-08 4.9E-13 80.3 10.8 97 74-193 2-117 (190)
76 COG1136 SalX ABC-type antimicr 98.9 1.4E-08 3E-13 83.1 9.5 44 140-192 160-203 (226)
77 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 1.5E-08 3.3E-13 84.1 9.1 110 70-192 26-199 (254)
78 cd00544 CobU Adenosylcobinamid 98.8 2.3E-08 5E-13 78.8 9.5 108 76-193 1-128 (169)
79 cd03222 ABC_RNaseL_inhibitor T 98.8 2.5E-08 5.4E-13 79.2 9.2 110 70-193 21-133 (177)
80 PRK08181 transposase; Validate 98.8 1.2E-08 2.6E-13 86.1 7.4 73 72-152 104-179 (269)
81 cd03216 ABC_Carb_Monos_I This 98.8 2.9E-08 6.2E-13 77.7 9.0 103 71-193 23-143 (163)
82 PF05621 TniB: Bacterial TniB 98.8 6E-08 1.3E-12 82.3 11.4 106 76-189 63-187 (302)
83 cd03214 ABC_Iron-Siderophores_ 98.8 4E-08 8.7E-13 78.0 9.7 107 70-194 21-160 (180)
84 PRK12377 putative replication 98.8 3.1E-08 6.8E-13 82.6 9.3 70 75-152 102-175 (248)
85 PF13479 AAA_24: AAA domain 98.8 5.4E-08 1.2E-12 79.4 10.2 109 74-196 3-141 (213)
86 PF13173 AAA_14: AAA domain 98.8 7.7E-08 1.7E-12 72.1 10.2 98 74-195 2-102 (128)
87 PRK06526 transposase; Provisio 98.8 1.5E-08 3.4E-13 84.8 6.8 74 71-152 95-171 (254)
88 KOG0734 AAA+-type ATPase conta 98.8 1.8E-08 3.8E-13 90.5 7.2 117 67-197 332-454 (752)
89 COG1131 CcmA ABC-type multidru 98.8 1.1E-07 2.5E-12 81.2 11.9 50 139-197 153-202 (293)
90 PRK05800 cobU adenosylcobinami 98.7 1.3E-07 2.7E-12 74.6 10.9 103 75-189 2-123 (170)
91 PF13401 AAA_22: AAA domain; P 98.7 4.8E-08 1E-12 72.9 8.1 105 72-191 2-125 (131)
92 cd03259 ABC_Carb_Solutes_like 98.7 1.9E-07 4.1E-12 75.9 11.9 45 140-193 148-192 (213)
93 cd03246 ABCC_Protease_Secretio 98.7 2.3E-07 4.9E-12 73.2 11.9 109 71-193 25-157 (173)
94 cd03301 ABC_MalK_N The N-termi 98.7 8.2E-08 1.8E-12 78.0 9.6 45 140-193 148-192 (213)
95 PF01695 IstB_IS21: IstB-like 98.7 1.6E-08 3.5E-13 80.3 5.2 71 73-151 46-119 (178)
96 PRK08727 hypothetical protein; 98.7 7.9E-08 1.7E-12 79.6 9.4 94 75-191 42-135 (233)
97 PRK13650 cbiO cobalt transport 98.7 2E-07 4.3E-12 79.2 11.9 46 140-194 158-203 (279)
98 cd03293 ABC_NrtD_SsuB_transpor 98.7 9.9E-08 2.2E-12 78.0 9.6 45 140-193 149-193 (220)
99 cd03230 ABC_DR_subfamily_A Thi 98.7 2.6E-07 5.6E-12 72.9 11.6 109 71-193 23-156 (173)
100 cd03238 ABC_UvrA The excision 98.7 2.1E-07 4.5E-12 73.8 10.9 111 71-194 18-151 (176)
101 cd03229 ABC_Class3 This class 98.7 1.3E-07 2.8E-12 75.0 9.6 110 71-193 23-162 (178)
102 PRK07952 DNA replication prote 98.7 9.2E-08 2E-12 79.6 9.0 70 75-152 100-174 (244)
103 PRK09183 transposase/IS protei 98.7 1.1E-07 2.3E-12 80.0 9.5 73 71-151 99-175 (259)
104 cd03298 ABC_ThiQ_thiamine_tran 98.7 1.3E-07 2.7E-12 76.9 9.6 46 140-194 146-191 (211)
105 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.2E-07 2.5E-12 77.4 9.4 46 140-194 158-203 (218)
106 PRK06921 hypothetical protein; 98.7 1.3E-07 2.9E-12 79.7 9.8 69 74-150 117-187 (266)
107 cd03258 ABC_MetN_methionine_tr 98.7 1.3E-07 2.9E-12 77.9 9.6 46 140-194 158-203 (233)
108 COG4107 PhnK ABC-type phosphon 98.7 2.2E-07 4.8E-12 72.8 10.1 39 71-115 29-67 (258)
109 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 3E-07 6.5E-12 70.4 10.8 101 70-193 22-128 (144)
110 COG3638 ABC-type phosphate/pho 98.7 1.7E-07 3.8E-12 76.5 9.8 44 140-192 165-208 (258)
111 PRK13635 cbiO cobalt transport 98.7 3E-07 6.5E-12 78.1 11.8 45 140-193 158-202 (279)
112 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 1.5E-07 3.2E-12 77.8 9.6 48 140-196 150-197 (236)
113 cd03265 ABC_DrrA DrrA is the A 98.7 1.6E-07 3.4E-12 76.8 9.7 45 140-193 149-193 (220)
114 cd03283 ABC_MutS-like MutS-lik 98.7 5.5E-07 1.2E-11 72.8 12.7 114 71-193 22-149 (199)
115 COG1135 AbcC ABC-type metal io 98.7 1.3E-07 2.8E-12 80.0 9.2 47 140-195 159-205 (339)
116 cd03237 ABC_RNaseL_inhibitor_d 98.7 4E-07 8.7E-12 76.0 12.1 114 69-193 20-177 (246)
117 PRK06835 DNA replication prote 98.7 1.2E-07 2.6E-12 82.3 9.1 70 75-152 184-258 (329)
118 cd03225 ABC_cobalt_CbiO_domain 98.7 1.6E-07 3.5E-12 76.2 9.5 28 71-98 24-51 (211)
119 PRK13648 cbiO cobalt transport 98.7 3.4E-07 7.3E-12 77.3 11.7 28 71-98 32-59 (269)
120 COG4604 CeuD ABC-type enteroch 98.7 2.2E-07 4.7E-12 74.2 9.7 40 70-116 23-62 (252)
121 COG1127 Ttg2A ABC-type transpo 98.7 2.7E-07 5.9E-12 75.6 10.4 40 70-116 30-69 (263)
122 PRK10584 putative ABC transpor 98.7 1.8E-07 4E-12 76.8 9.6 46 140-194 164-209 (228)
123 TIGR02314 ABC_MetN D-methionin 98.7 1.6E-07 3.4E-12 82.1 9.6 45 140-193 158-202 (343)
124 COG3842 PotA ABC-type spermidi 98.7 7.9E-08 1.7E-12 83.6 7.7 105 70-192 27-197 (352)
125 COG4608 AppF ABC-type oligopep 98.6 1.7E-07 3.6E-12 78.2 9.2 106 70-193 35-171 (268)
126 PRK11650 ugpC glycerol-3-phosp 98.6 3.3E-07 7.2E-12 80.5 11.6 45 140-193 152-196 (356)
127 TIGR01184 ntrCD nitrate transp 98.6 4.6E-07 9.9E-12 74.7 11.8 45 140-193 132-176 (230)
128 COG1122 CbiO ABC-type cobalt t 98.6 3.6E-07 7.7E-12 75.7 11.0 49 140-197 156-204 (235)
129 PRK05642 DNA replication initi 98.6 1.6E-07 3.6E-12 77.7 9.1 95 75-192 46-140 (234)
130 PRK08084 DNA replication initi 98.6 2.2E-07 4.8E-12 77.0 9.8 65 74-152 45-109 (235)
131 cd03261 ABC_Org_Solvent_Resist 98.6 1.9E-07 4.1E-12 77.1 9.4 45 140-193 154-198 (235)
132 PRK13537 nodulation ABC transp 98.6 3.8E-07 8.2E-12 78.5 11.6 29 70-98 29-57 (306)
133 cd00009 AAA The AAA+ (ATPases 98.6 5E-07 1.1E-11 67.5 10.9 105 73-193 18-131 (151)
134 TIGR02211 LolD_lipo_ex lipopro 98.6 2.2E-07 4.8E-12 75.9 9.6 47 140-195 159-205 (221)
135 COG3845 ABC-type uncharacteriz 98.6 2.9E-07 6.3E-12 82.1 10.9 118 54-193 12-201 (501)
136 PRK11247 ssuB aliphatic sulfon 98.6 2.2E-07 4.8E-12 78.0 9.8 112 71-193 35-195 (257)
137 COG4619 ABC-type uncharacteriz 98.6 5.2E-07 1.1E-11 70.4 10.8 52 58-117 14-65 (223)
138 TIGR01188 drrA daunorubicin re 98.6 4.2E-07 9.1E-12 78.0 11.6 29 70-98 15-43 (302)
139 COG1116 TauB ABC-type nitrate/ 98.6 4.5E-07 9.8E-12 74.7 11.1 44 140-192 148-191 (248)
140 COG1123 ATPase components of v 98.6 1.5E-07 3.2E-12 85.6 9.0 46 139-193 171-216 (539)
141 COG1117 PstB ABC-type phosphat 98.6 3E-07 6.5E-12 74.2 9.7 31 69-99 28-58 (253)
142 COG0410 LivF ABC-type branched 98.6 4.6E-07 9.9E-12 73.8 10.9 45 140-193 154-198 (237)
143 PRK11248 tauB taurine transpor 98.6 2.2E-07 4.8E-12 77.9 9.5 29 70-98 23-51 (255)
144 cd00267 ABC_ATPase ABC (ATP-bi 98.6 2.6E-07 5.6E-12 71.6 9.2 103 71-193 22-141 (157)
145 cd03269 ABC_putative_ATPase Th 98.6 6E-07 1.3E-11 72.8 11.8 28 71-98 23-50 (210)
146 TIGR03265 PhnT2 putative 2-ami 98.6 5.2E-07 1.1E-11 79.1 12.0 45 140-193 152-196 (353)
147 cd03292 ABC_FtsE_transporter F 98.6 2.6E-07 5.7E-12 75.1 9.4 28 71-98 24-51 (214)
148 COG1125 OpuBA ABC-type proline 98.6 5.2E-07 1.1E-11 74.6 11.1 41 70-117 23-63 (309)
149 PTZ00454 26S protease regulato 98.6 4.2E-07 9.2E-12 80.8 11.4 119 69-197 174-299 (398)
150 PRK13640 cbiO cobalt transport 98.6 6.4E-07 1.4E-11 76.2 12.1 46 140-194 161-206 (282)
151 TIGR00960 3a0501s02 Type II (G 98.6 2.4E-07 5.3E-12 75.5 9.2 29 70-98 25-53 (216)
152 COG0444 DppD ABC-type dipeptid 98.6 1.5E-07 3.2E-12 80.1 8.0 44 140-192 171-214 (316)
153 PF00308 Bac_DnaA: Bacterial d 98.6 4.4E-07 9.6E-12 74.4 10.6 102 76-192 36-140 (219)
154 PRK11153 metN DL-methionine tr 98.6 2.4E-07 5.2E-12 81.0 9.5 46 140-194 158-203 (343)
155 TIGR01277 thiQ thiamine ABC tr 98.6 2.9E-07 6.3E-12 74.9 9.4 46 140-194 146-191 (213)
156 PRK09544 znuC high-affinity zi 98.6 3.2E-07 6.8E-12 76.8 9.8 113 71-194 27-183 (251)
157 cd03243 ABC_MutS_homologs The 98.6 2.2E-07 4.7E-12 75.1 8.5 112 73-193 28-152 (202)
158 PRK11000 maltose/maltodextrin 98.6 5.6E-07 1.2E-11 79.4 11.8 45 140-193 151-195 (369)
159 PRK08116 hypothetical protein; 98.6 3.3E-07 7.1E-12 77.5 9.9 70 74-151 114-189 (268)
160 cd03223 ABCD_peroxisomal_ALDP 98.6 6.9E-07 1.5E-11 70.0 11.1 106 71-193 24-149 (166)
161 cd03256 ABC_PhnC_transporter A 98.6 3E-07 6.6E-12 76.0 9.5 46 140-194 162-207 (241)
162 cd03247 ABCC_cytochrome_bd The 98.6 2.7E-07 5.8E-12 73.1 8.8 110 70-195 24-160 (178)
163 cd03300 ABC_PotA_N PotA is an 98.6 3.5E-07 7.5E-12 75.5 9.8 29 71-99 23-51 (232)
164 PF07088 GvpD: GvpD gas vesicl 98.6 1.5E-07 3.3E-12 81.9 7.8 116 71-194 7-159 (484)
165 COG1222 RPT1 ATP-dependent 26S 98.6 3.5E-07 7.6E-12 78.8 9.9 128 56-197 169-305 (406)
166 PRK11432 fbpC ferric transport 98.6 7E-07 1.5E-11 78.3 12.1 45 140-193 154-198 (351)
167 PRK10771 thiQ thiamine transpo 98.6 3.3E-07 7.2E-12 75.6 9.5 46 140-194 147-192 (232)
168 PRK11629 lolD lipoprotein tran 98.6 3.4E-07 7.3E-12 75.6 9.6 46 140-194 163-208 (233)
169 PRK09452 potA putrescine/sperm 98.6 5.9E-07 1.3E-11 79.4 11.6 45 140-193 162-206 (375)
170 cd03294 ABC_Pro_Gly_Bertaine T 98.6 3.4E-07 7.4E-12 77.3 9.8 45 140-193 178-222 (269)
171 PRK06893 DNA replication initi 98.6 3.3E-07 7.2E-12 75.6 9.5 65 75-153 40-104 (229)
172 PRK13633 cobalt transporter AT 98.6 7.8E-07 1.7E-11 75.5 11.9 47 140-195 162-208 (280)
173 cd03266 ABC_NatA_sodium_export 98.6 3.2E-07 7E-12 74.8 9.2 28 71-98 28-55 (218)
174 PRK13647 cbiO cobalt transport 98.6 3E-07 6.4E-12 77.9 9.3 28 71-98 28-55 (274)
175 PRK08939 primosomal protein Dn 98.6 4.8E-07 1E-11 77.8 10.6 70 74-151 156-228 (306)
176 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 7.5E-07 1.6E-11 73.2 11.4 28 71-98 45-72 (224)
177 cd03226 ABC_cobalt_CbiO_domain 98.6 3.6E-07 7.7E-12 73.9 9.3 28 71-98 23-50 (205)
178 PRK11308 dppF dipeptide transp 98.6 3.3E-07 7.1E-12 79.6 9.6 45 140-193 172-216 (327)
179 PRK13642 cbiO cobalt transport 98.6 3.6E-07 7.7E-12 77.5 9.7 46 140-194 158-203 (277)
180 cd03267 ABC_NatA_like Similar 98.6 3.2E-07 7E-12 75.9 9.1 45 140-193 171-215 (236)
181 PRK13652 cbiO cobalt transport 98.6 3.8E-07 8.2E-12 77.4 9.8 46 140-194 155-200 (277)
182 cd03296 ABC_CysA_sulfate_impor 98.6 3.7E-07 8.1E-12 75.6 9.5 45 140-193 154-198 (239)
183 TIGR03410 urea_trans_UrtE urea 98.6 8.6E-07 1.9E-11 72.9 11.5 46 140-194 149-194 (230)
184 PRK10247 putative ABC transpor 98.6 4.8E-07 1E-11 74.3 9.9 47 140-195 155-201 (225)
185 TIGR03258 PhnT 2-aminoethylpho 98.6 8.6E-07 1.9E-11 78.0 12.0 45 140-193 155-200 (362)
186 TIGR03608 L_ocin_972_ABC putat 98.6 3.9E-07 8.5E-12 73.6 9.2 28 71-98 21-48 (206)
187 PRK13636 cbiO cobalt transport 98.6 9.2E-07 2E-11 75.3 11.9 45 140-193 159-203 (283)
188 cd03218 ABC_YhbG The ABC trans 98.6 3.8E-07 8.2E-12 75.1 9.3 28 71-98 23-50 (232)
189 TIGR01166 cbiO cobalt transpor 98.6 3.9E-07 8.4E-12 72.8 9.1 28 71-98 15-42 (190)
190 PRK13536 nodulation factor exp 98.6 7.8E-07 1.7E-11 77.7 11.7 28 71-98 64-91 (340)
191 cd03299 ABC_ModC_like Archeal 98.6 1.1E-06 2.3E-11 72.7 12.0 45 140-193 147-191 (235)
192 PRK11607 potG putrescine trans 98.6 8.2E-07 1.8E-11 78.5 11.9 45 140-193 167-211 (377)
193 cd03228 ABCC_MRP_Like The MRP 98.6 3.8E-07 8.3E-12 71.7 8.8 105 71-195 25-158 (171)
194 cd03213 ABCG_EPDR ABCG transpo 98.6 4.5E-07 9.7E-12 72.9 9.3 110 70-192 31-171 (194)
195 COG1484 DnaC DNA replication p 98.6 6.3E-07 1.4E-11 75.1 10.5 74 71-152 102-179 (254)
196 cd03268 ABC_BcrA_bacitracin_re 98.6 5.6E-07 1.2E-11 72.9 9.9 28 71-98 23-50 (208)
197 TIGR00968 3a0106s01 sulfate AB 98.6 5.2E-07 1.1E-11 74.7 9.7 46 140-194 148-193 (237)
198 PRK13634 cbiO cobalt transport 98.6 4.6E-07 1E-11 77.4 9.6 45 140-193 163-207 (290)
199 cd03215 ABC_Carb_Monos_II This 98.5 4.5E-07 9.8E-12 72.1 8.9 110 70-193 22-165 (182)
200 cd03224 ABC_TM1139_LivF_branch 98.5 4.9E-07 1.1E-11 73.9 9.4 29 70-98 22-50 (222)
201 PRK13539 cytochrome c biogenes 98.5 4.7E-07 1E-11 73.4 9.1 29 70-98 24-52 (207)
202 PRK13538 cytochrome c biogenes 98.5 4.6E-07 1E-11 73.3 9.0 29 70-98 23-51 (204)
203 COG3839 MalK ABC-type sugar tr 98.5 3.8E-07 8.3E-12 78.9 8.9 40 71-117 26-65 (338)
204 PRK14250 phosphate ABC transpo 98.5 5.7E-07 1.2E-11 74.7 9.7 46 140-194 149-194 (241)
205 COG3840 ThiQ ABC-type thiamine 98.5 5.7E-07 1.2E-11 71.0 9.0 45 142-195 149-193 (231)
206 TIGR02673 FtsE cell division A 98.5 5.4E-07 1.2E-11 73.2 9.3 28 70-97 24-51 (214)
207 PRK13646 cbiO cobalt transport 98.5 5.5E-07 1.2E-11 76.7 9.7 45 140-193 163-207 (286)
208 TIGR01288 nodI ATP-binding ABC 98.5 1.1E-06 2.4E-11 75.4 11.7 28 71-98 27-54 (303)
209 cd03217 ABC_FeS_Assembly ABC-t 98.5 5.6E-07 1.2E-11 72.6 9.2 114 70-195 22-167 (200)
210 PRK13632 cbiO cobalt transport 98.5 5.7E-07 1.2E-11 76.0 9.7 29 70-98 31-59 (271)
211 PRK13540 cytochrome c biogenes 98.5 6.4E-07 1.4E-11 72.2 9.6 28 71-98 24-51 (200)
212 PRK11144 modC molybdate transp 98.5 1.2E-06 2.6E-11 76.9 11.9 45 140-193 146-190 (352)
213 cd03231 ABC_CcmA_heme_exporter 98.5 5.3E-07 1.1E-11 72.8 9.0 28 71-98 23-50 (201)
214 PRK15112 antimicrobial peptide 98.5 5.8E-07 1.3E-11 75.8 9.6 46 140-194 167-212 (267)
215 TIGR02315 ABC_phnC phosphonate 98.5 6.4E-07 1.4E-11 74.2 9.7 46 140-194 163-208 (243)
216 KOG0727 26S proteasome regulat 98.5 6.8E-07 1.5E-11 73.9 9.4 123 61-197 178-309 (408)
217 cd03295 ABC_OpuCA_Osmoprotecti 98.5 6.9E-07 1.5E-11 74.1 9.7 45 140-193 153-197 (242)
218 TIGR01618 phage_P_loop phage n 98.5 6.8E-07 1.5E-11 73.2 9.3 115 74-193 12-144 (220)
219 PRK11831 putative ABC transpor 98.5 1.3E-06 2.8E-11 73.8 11.3 28 71-98 30-57 (269)
220 cd03232 ABC_PDR_domain2 The pl 98.5 1.6E-06 3.5E-11 69.5 11.4 111 71-193 30-169 (192)
221 PRK10908 cell division protein 98.5 1.6E-06 3.5E-11 70.9 11.7 28 71-98 25-52 (222)
222 PRK10851 sulfate/thiosulfate t 98.5 1.3E-06 2.9E-11 76.6 11.8 45 140-193 154-198 (353)
223 cd03263 ABC_subfamily_A The AB 98.5 5.9E-07 1.3E-11 73.3 8.9 28 71-98 25-52 (220)
224 PRK15079 oligopeptide ABC tran 98.5 1.5E-06 3.3E-11 75.6 11.9 45 140-193 179-223 (331)
225 PRK13548 hmuV hemin importer A 98.5 7.6E-07 1.6E-11 74.7 9.7 28 71-98 25-52 (258)
226 PRK11300 livG leucine/isoleuci 98.5 1.6E-06 3.5E-11 72.4 11.6 46 140-194 171-216 (255)
227 PRK10575 iron-hydroxamate tran 98.5 1.5E-06 3.3E-11 73.1 11.6 45 140-193 165-209 (265)
228 TIGR01189 ccmA heme ABC export 98.5 1.7E-06 3.7E-11 69.6 11.3 28 71-98 23-50 (198)
229 TIGR01186 proV glycine betaine 98.5 5.9E-07 1.3E-11 79.0 9.3 45 140-193 147-191 (363)
230 cd03233 ABC_PDR_domain1 The pl 98.5 9E-07 2E-11 71.6 9.6 28 71-98 30-57 (202)
231 KOG0731 AAA+-type ATPase conta 98.5 6.2E-07 1.3E-11 84.3 9.7 127 66-206 338-474 (774)
232 PRK13637 cbiO cobalt transport 98.5 1.7E-06 3.8E-11 73.7 11.8 45 140-193 162-206 (287)
233 cd03227 ABC_Class2 ABC-type Cl 98.5 2.7E-06 5.9E-11 66.4 12.0 110 73-193 20-142 (162)
234 TIGR02982 heterocyst_DevA ABC 98.5 9.1E-07 2E-11 72.4 9.6 45 140-193 159-203 (220)
235 cd03219 ABC_Mj1267_LivG_branch 98.5 1.8E-06 3.9E-11 71.2 11.4 28 71-98 23-50 (236)
236 TIGR02142 modC_ABC molybdenum 98.5 7.6E-07 1.6E-11 78.2 9.6 45 140-193 149-193 (354)
237 cd03262 ABC_HisP_GlnQ_permease 98.5 8.8E-07 1.9E-11 71.9 9.4 29 70-98 22-50 (213)
238 cd03280 ABC_MutS2 MutS2 homolo 98.5 2E-06 4.4E-11 69.4 11.4 112 71-192 24-151 (200)
239 PRK10070 glycine betaine trans 98.5 6.9E-07 1.5E-11 79.6 9.3 45 140-193 182-226 (400)
240 COG1123 ATPase components of v 98.5 6.2E-07 1.3E-11 81.6 9.1 47 140-195 447-493 (539)
241 PRK09473 oppD oligopeptide tra 98.5 8.2E-07 1.8E-11 77.2 9.6 45 140-193 179-223 (330)
242 COG2884 FtsE Predicted ATPase 98.5 9.5E-07 2.1E-11 70.1 8.9 45 54-99 9-53 (223)
243 PRK09493 glnQ glutamine ABC tr 98.5 9.3E-07 2E-11 73.2 9.5 29 70-98 23-51 (240)
244 COG4555 NatA ABC-type Na+ tran 98.5 2.4E-06 5.2E-11 68.5 11.2 39 71-116 25-63 (245)
245 TIGR03740 galliderm_ABC gallid 98.5 1E-06 2.2E-11 72.2 9.5 28 71-98 23-50 (223)
246 TIGR02769 nickel_nikE nickel i 98.5 9.1E-07 2E-11 74.5 9.4 46 140-194 168-213 (265)
247 cd03257 ABC_NikE_OppD_transpor 98.5 9.5E-07 2.1E-11 72.4 9.3 45 140-193 163-207 (228)
248 cd03235 ABC_Metallic_Cations A 98.5 1E-06 2.3E-11 71.6 9.4 29 70-98 21-49 (213)
249 PRK09536 btuD corrinoid ABC tr 98.5 1.8E-06 4E-11 76.9 11.6 29 70-98 25-53 (402)
250 cd03253 ABCC_ATM1_transporter 98.5 8.5E-07 1.8E-11 73.2 8.9 29 70-98 23-51 (236)
251 PRK11022 dppD dipeptide transp 98.5 1.1E-06 2.3E-11 76.4 9.8 45 140-193 171-215 (326)
252 PRK13546 teichoic acids export 98.5 1.1E-06 2.4E-11 74.0 9.6 28 71-98 47-74 (264)
253 PRK13644 cbiO cobalt transport 98.5 2.2E-06 4.7E-11 72.6 11.4 28 71-98 25-52 (274)
254 PRK13638 cbiO cobalt transport 98.5 9.4E-07 2E-11 74.7 8.9 29 70-98 23-51 (271)
255 PRK10253 iron-enterobactin tra 98.5 1E-06 2.2E-11 74.2 9.1 28 71-98 30-57 (265)
256 TIGR01241 FtsH_fam ATP-depende 98.5 1.1E-06 2.4E-11 80.5 10.0 113 70-196 86-207 (495)
257 PRK13541 cytochrome c biogenes 98.4 1.5E-06 3.3E-11 69.7 9.6 28 71-98 23-50 (195)
258 COG0411 LivG ABC-type branched 98.4 6.6E-07 1.4E-11 73.4 7.4 47 140-195 167-213 (250)
259 PTZ00361 26 proteosome regulat 98.4 1.6E-06 3.6E-11 77.8 10.7 117 70-196 213-336 (438)
260 PRK13543 cytochrome c biogenes 98.4 1.2E-06 2.7E-11 71.4 9.1 29 70-98 33-61 (214)
261 PRK11176 lipid transporter ATP 98.4 1.2E-06 2.5E-11 81.7 10.0 29 71-99 366-394 (582)
262 PRK13645 cbiO cobalt transport 98.4 1.3E-06 2.9E-11 74.5 9.6 45 140-193 168-212 (289)
263 TIGR02770 nickel_nikD nickel i 98.4 3.7E-06 8.1E-11 69.2 11.9 46 140-194 143-188 (230)
264 COG1129 MglA ABC-type sugar tr 98.4 2.2E-06 4.7E-11 77.6 11.2 40 59-99 20-59 (500)
265 COG1118 CysA ABC-type sulfate/ 98.4 2.6E-06 5.6E-11 72.2 10.8 44 140-192 155-198 (345)
266 PRK03992 proteasome-activating 98.4 1.8E-06 3.9E-11 76.7 10.5 117 70-196 161-284 (389)
267 PHA00729 NTP-binding motif con 98.4 1E-06 2.2E-11 72.2 8.2 79 64-153 10-95 (226)
268 KOG0733 Nuclear AAA ATPase (VC 98.4 1.5E-06 3.3E-11 79.3 9.9 120 62-198 535-663 (802)
269 COG4586 ABC-type uncharacteriz 98.4 9.4E-07 2E-11 73.7 7.9 50 139-197 173-222 (325)
270 PRK11614 livF leucine/isoleuci 98.4 1.3E-06 2.9E-11 72.2 9.0 29 70-98 27-55 (237)
271 PRK13639 cbiO cobalt transport 98.4 1.3E-06 2.8E-11 74.0 9.1 29 70-98 24-52 (275)
272 TIGR02868 CydC thiol reductant 98.4 9.6E-07 2.1E-11 81.4 8.9 28 71-98 358-385 (529)
273 cd03297 ABC_ModC_molybdenum_tr 98.4 4.2E-06 9.1E-11 68.1 11.8 45 140-193 149-193 (214)
274 PRK14086 dnaA chromosomal repl 98.4 7.4E-07 1.6E-11 82.6 8.0 101 76-191 316-419 (617)
275 PRK14087 dnaA chromosomal repl 98.4 2.5E-06 5.4E-11 77.2 11.2 101 76-191 143-248 (450)
276 PRK08903 DnaA regulatory inact 98.4 2.8E-06 6E-11 69.8 10.6 64 71-152 39-102 (227)
277 PRK10418 nikD nickel transport 98.4 1.7E-06 3.7E-11 72.4 9.5 45 140-193 158-202 (254)
278 PRK13643 cbiO cobalt transport 98.4 1.5E-06 3.2E-11 74.2 9.3 29 70-98 28-56 (288)
279 PRK10419 nikE nickel transport 98.4 1.7E-06 3.6E-11 73.0 9.5 45 140-193 169-213 (268)
280 TIGR03420 DnaA_homol_Hda DnaA 98.4 2E-06 4.4E-11 70.3 9.7 67 72-152 36-102 (226)
281 PRK10895 lipopolysaccharide AB 98.4 1.6E-06 3.5E-11 71.8 9.1 28 71-98 26-53 (241)
282 PRK14088 dnaA chromosomal repl 98.4 1.8E-06 3.9E-11 77.9 10.0 72 76-153 132-207 (440)
283 cd03252 ABCC_Hemolysin The ABC 98.4 1.6E-06 3.5E-11 71.6 9.0 28 71-98 25-52 (237)
284 cd03251 ABCC_MsbA MsbA is an e 98.4 1.5E-06 3.3E-11 71.6 8.9 28 71-98 25-52 (234)
285 PRK13409 putative ATPase RIL; 98.4 3.2E-06 7E-11 78.9 12.0 112 69-193 360-515 (590)
286 PRK11701 phnK phosphonate C-P 98.4 2E-06 4.3E-11 72.1 9.5 46 140-194 169-214 (258)
287 KOG0733 Nuclear AAA ATPase (VC 98.4 1.9E-06 4.1E-11 78.8 9.8 126 70-210 219-352 (802)
288 COG2274 SunT ABC-type bacterio 98.4 1.3E-06 2.9E-11 82.7 9.3 39 70-115 495-533 (709)
289 TIGR03522 GldA_ABC_ATP gliding 98.4 3.6E-06 7.8E-11 72.3 11.1 27 71-97 25-51 (301)
290 cd03254 ABCC_Glucan_exporter_l 98.4 4.1E-06 8.8E-11 68.8 11.0 29 70-98 25-53 (229)
291 CHL00195 ycf46 Ycf46; Provisio 98.4 4.5E-06 9.7E-11 76.1 12.2 75 70-154 255-332 (489)
292 TIGR03005 ectoine_ehuA ectoine 98.4 2E-06 4.4E-11 71.8 9.3 45 140-193 164-208 (252)
293 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 1.4E-06 3E-11 83.2 9.3 29 71-99 502-530 (710)
294 TIGR03375 type_I_sec_LssB type 98.4 1.3E-06 2.9E-11 83.1 9.1 29 71-99 488-516 (694)
295 PRK03695 vitamin B12-transport 98.4 1.9E-06 4.2E-11 71.8 9.1 27 71-97 19-45 (248)
296 TIGR03771 anch_rpt_ABC anchore 98.4 2.7E-06 5.8E-11 69.8 9.7 28 71-98 3-30 (223)
297 COG3854 SpoIIIAA ncharacterize 98.4 2.2E-06 4.8E-11 70.0 8.8 104 71-193 133-254 (308)
298 TIGR03689 pup_AAA proteasome A 98.4 3.6E-06 7.8E-11 76.9 11.3 126 70-196 212-347 (512)
299 cd03250 ABCC_MRP_domain1 Domai 98.4 2.4E-06 5.3E-11 69.0 9.2 29 70-98 27-55 (204)
300 COG4615 PvdE ABC-type sideroph 98.4 3.8E-06 8.2E-11 73.5 10.8 108 70-196 345-513 (546)
301 TIGR03415 ABC_choXWV_ATP choli 98.4 2E-06 4.4E-11 76.1 9.4 45 140-193 182-226 (382)
302 PRK15439 autoinducer 2 ABC tra 98.4 3.6E-06 7.8E-11 77.4 11.4 29 70-98 33-61 (510)
303 PRK12422 chromosomal replicati 98.4 1.6E-06 3.4E-11 78.4 8.7 70 75-152 142-214 (445)
304 PRK13547 hmuV hemin importer A 98.4 2.8E-06 6.1E-11 71.9 9.8 45 140-193 172-216 (272)
305 PRK13657 cyclic beta-1,2-gluca 98.4 1.6E-06 3.5E-11 81.0 9.0 29 71-99 358-386 (588)
306 PRK15093 antimicrobial peptide 98.4 2.8E-06 6E-11 73.9 9.8 45 140-193 176-220 (330)
307 cd03234 ABCG_White The White s 98.4 3.4E-06 7.3E-11 69.3 9.8 29 70-98 29-57 (226)
308 PRK15056 manganese/iron transp 98.4 2.8E-06 6E-11 71.9 9.4 28 71-98 30-57 (272)
309 cd03369 ABCC_NFT1 Domain 2 of 98.4 2.9E-06 6.3E-11 68.7 9.1 28 71-98 31-58 (207)
310 TIGR02323 CP_lyasePhnK phospho 98.4 3.3E-06 7E-11 70.5 9.7 45 140-193 166-210 (253)
311 TIGR03873 F420-0_ABC_ATP propo 98.4 2.6E-06 5.7E-11 71.3 9.1 28 71-98 24-51 (256)
312 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 1.7E-06 3.7E-11 82.2 8.9 29 71-99 476-504 (686)
313 CHL00176 ftsH cell division pr 98.4 2.6E-06 5.6E-11 80.0 9.9 110 76-196 218-335 (638)
314 PRK13649 cbiO cobalt transport 98.3 2.5E-06 5.4E-11 72.4 9.0 29 70-98 29-57 (280)
315 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.3 6.4E-06 1.4E-10 68.1 11.3 28 71-98 26-53 (238)
316 TIGR01242 26Sp45 26S proteasom 98.3 2E-06 4.4E-11 75.7 8.7 117 70-196 152-275 (364)
317 cd03271 ABC_UvrA_II The excisi 98.3 8.4E-06 1.8E-10 68.6 12.0 26 70-95 17-42 (261)
318 TIGR01193 bacteriocin_ABC ABC- 98.3 2.1E-06 4.5E-11 81.9 9.4 29 71-99 497-525 (708)
319 PRK11264 putative amino-acid A 98.3 3.1E-06 6.7E-11 70.5 9.3 29 70-98 25-53 (250)
320 TIGR02324 CP_lyasePhnL phospho 98.3 3.5E-06 7.6E-11 69.0 9.5 28 71-98 31-58 (224)
321 TIGR02857 CydD thiol reductant 98.3 2.2E-06 4.8E-11 79.0 9.2 30 70-99 344-373 (529)
322 TIGR00362 DnaA chromosomal rep 98.3 1.5E-06 3.2E-11 77.7 7.7 74 74-153 136-212 (405)
323 PRK13641 cbiO cobalt transport 98.3 3E-06 6.5E-11 72.3 9.2 28 71-98 30-57 (287)
324 TIGR03411 urea_trans_UrtD urea 98.3 3.3E-06 7.3E-11 69.9 9.3 29 70-98 24-52 (242)
325 TIGR01194 cyc_pep_trnsptr cycl 98.3 2.7E-06 5.8E-11 79.0 9.6 29 71-99 365-393 (555)
326 PRK10790 putative multidrug tr 98.3 2.4E-06 5.3E-11 79.8 9.3 29 71-99 364-392 (592)
327 PRK10522 multidrug transporter 98.3 2.7E-06 5.7E-11 78.9 9.5 28 71-98 346-373 (547)
328 cd03245 ABCC_bacteriocin_expor 98.3 2.9E-06 6.4E-11 69.2 8.7 28 71-98 27-54 (220)
329 cd03248 ABCC_TAP TAP, the Tran 98.3 3.8E-06 8.2E-11 68.9 9.4 28 71-98 37-64 (226)
330 TIGR02204 MsbA_rel ABC transpo 98.3 3.1E-06 6.7E-11 78.7 9.9 29 71-99 363-391 (576)
331 cd03264 ABC_drug_resistance_li 98.3 3.6E-06 7.7E-11 68.3 9.1 27 71-98 23-49 (211)
332 COG4172 ABC-type uncharacteriz 98.3 3.1E-06 6.7E-11 74.3 9.0 45 140-193 444-488 (534)
333 cd03244 ABCC_MRP_domain2 Domai 98.3 8E-06 1.7E-10 66.7 11.2 28 71-98 27-54 (221)
334 COG1134 TagH ABC-type polysacc 98.3 2.6E-06 5.7E-11 70.0 8.0 28 71-98 50-77 (249)
335 PRK09984 phosphonate/organopho 98.3 4.4E-06 9.5E-11 70.2 9.7 45 140-193 170-214 (262)
336 PRK11231 fecE iron-dicitrate t 98.3 3.7E-06 8E-11 70.3 9.2 28 71-98 25-52 (255)
337 PRK10261 glutathione transport 98.3 7E-06 1.5E-10 77.3 12.0 45 140-193 481-525 (623)
338 PRK00149 dnaA chromosomal repl 98.3 2.5E-06 5.5E-11 77.2 8.6 72 75-152 149-223 (450)
339 PRK13651 cobalt transporter AT 98.3 9E-06 1.9E-10 70.0 11.5 29 70-98 29-57 (305)
340 cd03236 ABC_RNaseL_inhibitor_d 98.3 9.1E-06 2E-10 68.2 11.3 35 62-98 16-50 (255)
341 TIGR01243 CDC48 AAA family ATP 98.3 7E-06 1.5E-10 78.6 11.8 111 70-190 208-322 (733)
342 PRK10789 putative multidrug tr 98.3 3.4E-06 7.4E-11 78.5 9.4 28 71-98 338-365 (569)
343 TIGR02203 MsbA_lipidA lipid A 98.3 4E-06 8.7E-11 77.9 9.7 29 71-99 355-383 (571)
344 TIGR01846 type_I_sec_HlyB type 98.3 3.5E-06 7.7E-11 80.2 9.6 29 71-99 480-508 (694)
345 PRK11124 artP arginine transpo 98.3 5.4E-06 1.2E-10 68.7 9.4 29 70-98 24-52 (242)
346 cd03281 ABC_MSH5_euk MutS5 hom 98.3 2.1E-05 4.6E-10 64.2 12.7 112 74-193 29-155 (213)
347 cd03115 SRP The signal recogni 98.3 1.4E-05 2.9E-10 62.8 11.2 37 76-118 2-38 (173)
348 PRK11174 cysteine/glutathione 98.3 3.7E-06 8E-11 78.5 9.2 28 71-98 373-400 (588)
349 TIGR01192 chvA glucan exporter 98.3 3.4E-06 7.3E-11 78.8 8.9 28 71-98 358-385 (585)
350 cd03260 ABC_PstB_phosphate_tra 98.3 6.9E-06 1.5E-10 67.4 9.8 29 70-98 22-50 (227)
351 PRK11160 cysteine/glutathione 98.3 3.5E-06 7.6E-11 78.5 9.0 29 71-99 363-391 (574)
352 KOG0061 Transporter, ABC super 98.3 3.5E-06 7.7E-11 78.9 9.0 31 69-99 51-81 (613)
353 PRK13545 tagH teichoic acids e 98.3 4.5E-06 9.8E-11 76.3 9.2 29 70-98 46-74 (549)
354 cd03287 ABC_MSH3_euk MutS3 hom 98.3 1.4E-05 3.1E-10 65.6 11.4 115 71-193 28-155 (222)
355 PRK10619 histidine/lysine/argi 98.3 1.4E-05 3.1E-10 66.9 11.7 29 70-98 27-55 (257)
356 TIGR01243 CDC48 AAA family ATP 98.3 8.6E-06 1.9E-10 78.0 11.6 118 70-197 483-605 (733)
357 PRK09700 D-allose transporter 98.3 8E-06 1.7E-10 75.0 10.9 29 70-98 27-55 (510)
358 cd03282 ABC_MSH4_euk MutS4 hom 98.3 8E-06 1.7E-10 66.3 9.7 114 71-193 26-152 (204)
359 TIGR01842 type_I_sec_PrtD type 98.3 4.8E-06 1E-10 77.1 9.5 29 71-99 341-369 (544)
360 PRK13631 cbiO cobalt transport 98.3 1.1E-05 2.3E-10 70.0 11.0 29 70-98 48-76 (320)
361 PRK12724 flagellar biosynthesi 98.3 1.4E-05 2.9E-10 71.3 11.7 75 71-151 220-310 (432)
362 TIGR01978 sufC FeS assembly AT 98.3 7.1E-06 1.5E-10 67.9 9.4 28 70-97 22-49 (243)
363 KOG0738 AAA+-type ATPase [Post 98.3 1.3E-05 2.9E-10 69.9 11.2 99 38-155 216-319 (491)
364 cd03289 ABCC_CFTR2 The CFTR su 98.2 6.6E-06 1.4E-10 69.8 9.3 28 71-98 27-54 (275)
365 PF00448 SRP54: SRP54-type pro 98.2 2.1E-05 4.5E-10 63.5 11.8 38 75-118 2-39 (196)
366 TIGR03269 met_CoM_red_A2 methy 98.2 5.6E-06 1.2E-10 76.2 9.6 46 140-194 186-231 (520)
367 smart00534 MUTSac ATPase domai 98.2 1.7E-05 3.7E-10 63.2 11.2 110 76-193 1-123 (185)
368 cd03284 ABC_MutS1 MutS1 homolo 98.2 1.1E-05 2.3E-10 66.1 10.2 110 75-192 31-153 (216)
369 PLN00020 ribulose bisphosphate 98.2 1.9E-05 4.2E-10 69.0 12.1 78 69-155 143-227 (413)
370 PRK10762 D-ribose transporter 98.2 1.1E-05 2.4E-10 74.0 11.3 29 70-98 26-54 (501)
371 PRK10938 putative molybdenum t 98.2 1.1E-05 2.5E-10 73.6 11.3 28 71-98 26-53 (490)
372 TIGR01425 SRP54_euk signal rec 98.2 7.3E-05 1.6E-09 67.0 16.0 39 74-118 100-138 (429)
373 TIGR00958 3a01208 Conjugate Tr 98.2 8.8E-06 1.9E-10 77.7 10.9 29 71-99 504-532 (711)
374 TIGR03499 FlhF flagellar biosy 98.2 6.6E-06 1.4E-10 70.1 8.8 73 72-149 192-281 (282)
375 PRK10867 signal recognition pa 98.2 7.3E-05 1.6E-09 67.2 15.6 72 74-152 100-195 (433)
376 PRK14722 flhF flagellar biosyn 98.2 5.8E-06 1.2E-10 72.8 8.4 76 71-151 134-226 (374)
377 cd03290 ABCC_SUR1_N The SUR do 98.2 1.2E-05 2.6E-10 65.6 9.7 28 71-98 24-51 (218)
378 PRK10416 signal recognition pa 98.2 3.2E-05 6.8E-10 67.0 12.7 41 72-118 112-152 (318)
379 KOG0058 Peptide exporter, ABC 98.2 8.5E-06 1.8E-10 75.9 9.6 29 70-98 490-518 (716)
380 cd03285 ABC_MSH2_euk MutS2 hom 98.2 1E-05 2.2E-10 66.5 9.2 111 71-192 27-153 (222)
381 PRK10982 galactose/methyl gala 98.2 7E-06 1.5E-10 75.1 9.0 29 70-98 20-48 (491)
382 COG4172 ABC-type uncharacteriz 98.2 8.5E-06 1.8E-10 71.5 8.9 44 139-191 174-217 (534)
383 PRK14247 phosphate ABC transpo 98.2 1.2E-05 2.6E-10 66.9 9.7 28 71-98 26-53 (250)
384 COG4598 HisP ABC-type histidin 98.2 2.9E-05 6.2E-10 61.4 11.0 44 140-192 170-213 (256)
385 PRK00771 signal recognition pa 98.2 0.00014 3E-09 65.5 16.9 74 73-152 94-187 (437)
386 PRK11288 araG L-arabinose tran 98.2 1.7E-05 3.6E-10 72.8 11.3 29 70-98 26-54 (501)
387 PRK05703 flhF flagellar biosyn 98.2 2E-05 4.3E-10 70.8 11.5 75 72-151 219-310 (424)
388 cd03270 ABC_UvrA_I The excisio 98.2 1.5E-05 3.2E-10 65.6 9.7 21 71-91 18-38 (226)
389 PRK09580 sufC cysteine desulfu 98.2 1.3E-05 2.8E-10 66.7 9.4 29 70-98 23-51 (248)
390 PRK10261 glutathione transport 98.2 1E-05 2.3E-10 76.1 9.8 45 140-193 186-230 (623)
391 cd03288 ABCC_SUR2 The SUR doma 98.2 1.1E-05 2.3E-10 67.7 8.9 28 71-98 44-71 (257)
392 COG4148 ModC ABC-type molybdat 98.2 1.3E-05 2.8E-10 67.3 9.2 47 140-195 146-192 (352)
393 PRK10733 hflB ATP-dependent me 98.2 1.6E-05 3.5E-10 75.0 11.0 117 67-197 180-305 (644)
394 COG0464 SpoVK ATPases of the A 98.2 1.5E-05 3.3E-10 72.9 10.5 118 70-197 272-393 (494)
395 KOG0736 Peroxisome assembly fa 98.2 1.3E-05 2.9E-10 75.1 10.0 110 66-192 697-819 (953)
396 COG4559 ABC-type hemin transpo 98.2 2.5E-05 5.5E-10 63.2 10.3 39 71-115 24-62 (259)
397 PRK14267 phosphate ABC transpo 98.2 1.4E-05 3.1E-10 66.6 9.5 29 70-98 26-54 (253)
398 PRK14258 phosphate ABC transpo 98.2 1.6E-05 3.5E-10 66.8 9.8 29 71-99 30-58 (261)
399 PRK15177 Vi polysaccharide exp 98.2 1.3E-05 2.7E-10 65.4 8.8 28 71-98 10-37 (213)
400 PRK12726 flagellar biosynthesi 98.2 3.2E-05 6.9E-10 68.1 11.7 76 71-152 203-297 (407)
401 COG1132 MdlB ABC-type multidru 98.2 1E-05 2.2E-10 75.3 9.2 29 71-99 352-380 (567)
402 PRK12727 flagellar biosynthesi 98.2 2.9E-05 6.3E-10 71.0 11.8 77 71-151 347-439 (559)
403 PRK14235 phosphate transporter 98.2 4.3E-05 9.2E-10 64.4 12.2 30 70-99 41-70 (267)
404 PRK13549 xylose transporter AT 98.1 2.2E-05 4.9E-10 72.0 11.3 29 70-98 27-55 (506)
405 PRK15134 microcin C ABC transp 98.1 2.8E-05 6E-10 71.8 11.9 45 140-193 174-218 (529)
406 COG4618 ArpD ABC-type protease 98.1 1.3E-05 2.9E-10 72.0 9.3 28 71-98 359-386 (580)
407 PRK14273 phosphate ABC transpo 98.1 1.8E-05 3.9E-10 66.1 9.7 29 70-98 29-57 (254)
408 PLN03130 ABC transporter C fam 98.1 7.6E-06 1.6E-10 84.3 8.8 40 70-116 1261-1300(1622)
409 COG4181 Predicted ABC-type tra 98.1 1.9E-05 4E-10 62.0 8.8 45 139-192 163-207 (228)
410 TIGR00972 3a0107s01c2 phosphat 98.1 1.6E-05 3.5E-10 66.1 9.3 29 70-98 23-51 (247)
411 PRK14249 phosphate ABC transpo 98.1 1.6E-05 3.5E-10 66.3 9.2 28 71-98 27-54 (251)
412 PF08433 KTI12: Chromatin asso 98.1 1.7E-05 3.7E-10 67.0 9.3 89 76-188 3-103 (270)
413 cd03286 ABC_MSH6_euk MutS6 hom 98.1 1.3E-05 2.8E-10 65.7 8.3 114 71-193 27-154 (218)
414 COG1245 Predicted ATPase, RNas 98.1 3.3E-05 7.2E-10 68.8 11.3 115 68-192 361-516 (591)
415 PRK14269 phosphate ABC transpo 98.1 4.2E-05 9.2E-10 63.6 11.5 28 71-98 25-52 (246)
416 PTZ00265 multidrug resistance 98.1 1.4E-05 3E-10 81.7 10.1 29 71-99 1191-1219(1466)
417 COG4152 ABC-type uncharacteriz 98.1 9.6E-06 2.1E-10 66.9 7.3 49 139-197 147-195 (300)
418 PRK15134 microcin C ABC transp 98.1 3.2E-05 7E-10 71.4 11.7 46 140-194 443-488 (529)
419 CHL00181 cbbX CbbX; Provisiona 98.1 2E-05 4.3E-10 67.3 9.6 108 73-191 58-170 (287)
420 PRK14242 phosphate transporter 98.1 2.2E-05 4.7E-10 65.5 9.6 28 71-98 29-56 (253)
421 PLN03232 ABC transporter C fam 98.1 9.5E-06 2.1E-10 83.1 8.7 28 71-98 1259-1286(1495)
422 COG4988 CydD ABC-type transpor 98.1 1.6E-05 3.5E-10 72.5 9.1 28 71-98 344-371 (559)
423 PF05729 NACHT: NACHT domain 98.1 4.1E-05 8.8E-10 58.9 10.3 115 75-193 1-131 (166)
424 PLN03211 ABC transporter G-25; 98.1 1.2E-05 2.7E-10 76.0 8.7 30 69-98 89-118 (659)
425 PRK14240 phosphate transporter 98.1 5.5E-05 1.2E-09 63.0 11.7 28 71-98 26-53 (250)
426 PRK14268 phosphate ABC transpo 98.1 2.4E-05 5.2E-10 65.6 9.5 29 70-98 34-62 (258)
427 TIGR02880 cbbX_cfxQ probable R 98.1 3.5E-05 7.7E-10 65.6 10.6 76 74-154 58-135 (284)
428 PRK14262 phosphate ABC transpo 98.1 6E-05 1.3E-09 62.8 11.7 28 70-97 25-52 (250)
429 CHL00131 ycf16 sulfate ABC tra 98.1 2.4E-05 5.1E-10 65.2 9.2 28 70-97 29-56 (252)
430 TIGR00064 ftsY signal recognit 98.1 6.9E-05 1.5E-09 63.5 12.1 41 72-118 70-110 (272)
431 TIGR03269 met_CoM_red_A2 methy 98.1 5.2E-05 1.1E-09 69.9 12.2 47 140-195 445-491 (520)
432 cd03291 ABCC_CFTR1 The CFTR su 98.1 2.3E-05 4.9E-10 66.7 9.2 28 71-98 60-87 (282)
433 cd03239 ABC_SMC_head The struc 98.1 8.7E-05 1.9E-09 58.9 11.9 107 76-193 24-159 (178)
434 TIGR00955 3a01204 The Eye Pigm 98.1 1.4E-05 3E-10 75.2 8.5 30 69-98 46-75 (617)
435 COG0465 HflB ATP-dependent Zn 98.1 8.8E-06 1.9E-10 75.1 6.9 108 67-187 178-293 (596)
436 PRK11889 flhF flagellar biosyn 98.1 6.7E-05 1.4E-09 66.4 12.0 74 74-153 241-333 (436)
437 PRK14253 phosphate ABC transpo 98.1 3.5E-05 7.7E-10 64.1 10.0 28 71-98 26-53 (249)
438 TIGR00957 MRP_assoc_pro multi 98.1 1.4E-05 3E-10 82.1 8.9 39 71-116 1309-1347(1522)
439 PRK14246 phosphate ABC transpo 98.1 2.4E-05 5.1E-10 65.7 8.9 28 71-98 33-60 (257)
440 PRK13409 putative ATPase RIL; 98.1 2.6E-05 5.6E-10 73.0 9.9 29 70-98 95-123 (590)
441 TIGR01187 potA spermidine/putr 98.1 3.9E-05 8.5E-10 66.6 10.5 45 140-193 118-162 (325)
442 COG0488 Uup ATPase components 98.1 1.7E-05 3.7E-10 73.0 8.5 108 70-193 344-497 (530)
443 PF05496 RuvB_N: Holliday junc 98.1 1.3E-05 2.7E-10 65.6 6.8 62 76-152 52-113 (233)
444 PRK14272 phosphate ABC transpo 98.1 3.2E-05 6.9E-10 64.4 9.5 29 70-98 26-54 (252)
445 PRK14251 phosphate ABC transpo 98.1 3.3E-05 7.2E-10 64.3 9.6 28 71-98 27-54 (251)
446 PRK14270 phosphate ABC transpo 98.1 8.8E-05 1.9E-09 61.8 12.1 28 71-98 27-54 (251)
447 PRK10744 pstB phosphate transp 98.1 3.3E-05 7.1E-10 64.8 9.5 29 70-98 35-63 (260)
448 PRK14274 phosphate ABC transpo 98.1 8.9E-05 1.9E-09 62.1 12.2 28 71-98 35-62 (259)
449 PRK14257 phosphate ABC transpo 98.1 2.7E-05 5.8E-10 67.8 9.3 29 70-98 104-132 (329)
450 PRK14248 phosphate ABC transpo 98.1 3.6E-05 7.9E-10 64.8 9.9 28 71-98 44-71 (268)
451 TIGR01257 rim_protein retinal- 98.0 3.2E-05 7E-10 80.7 11.1 30 70-99 1961-1990(2272)
452 PRK14236 phosphate transporter 98.0 3.7E-05 8E-10 65.0 9.8 29 70-98 47-75 (272)
453 PRK14239 phosphate transporter 98.0 3.3E-05 7.2E-10 64.4 9.4 27 71-97 28-54 (252)
454 PRK15064 ABC transporter ATP-b 98.0 4.5E-05 9.8E-10 70.4 11.1 29 70-98 23-51 (530)
455 PRK00411 cdc6 cell division co 98.0 7.7E-05 1.7E-09 66.1 12.2 74 76-153 57-151 (394)
456 PRK14271 phosphate ABC transpo 98.0 9.4E-05 2E-09 62.7 12.1 28 71-98 44-71 (276)
457 PRK15064 ABC transporter ATP-b 98.0 4.7E-05 1E-09 70.3 11.1 27 71-97 342-368 (530)
458 PRK10636 putative ABC transpor 98.0 4.2E-05 9E-10 72.3 10.9 29 70-98 334-362 (638)
459 PRK14241 phosphate transporter 98.0 3.6E-05 7.8E-10 64.5 9.5 28 71-98 27-54 (258)
460 PRK10762 D-ribose transporter 98.0 2.5E-05 5.5E-10 71.6 9.3 29 70-98 274-302 (501)
461 PRK14265 phosphate ABC transpo 98.0 3E-05 6.5E-10 65.6 9.1 28 71-98 43-70 (274)
462 PRK14256 phosphate ABC transpo 98.0 4E-05 8.7E-10 63.9 9.7 28 71-98 27-54 (252)
463 TIGR02881 spore_V_K stage V sp 98.0 4.2E-05 9.1E-10 64.3 9.8 74 75-154 43-119 (261)
464 COG0396 sufC Cysteine desulfur 98.0 4.1E-05 8.8E-10 62.6 9.2 27 71-97 27-53 (251)
465 PRK07721 fliI flagellum-specif 98.0 4E-05 8.7E-10 69.0 10.2 44 53-98 139-182 (438)
466 PRK14238 phosphate transporter 98.0 4.4E-05 9.5E-10 64.5 10.0 28 71-98 47-74 (271)
467 PRK11288 araG L-arabinose tran 98.0 4.2E-05 9.2E-10 70.1 10.6 28 71-98 276-303 (501)
468 PF00005 ABC_tran: ABC transpo 98.0 1.1E-05 2.5E-10 60.6 5.8 28 71-98 8-35 (137)
469 KOG0730 AAA+-type ATPase [Post 98.0 2.4E-05 5.1E-10 72.2 8.7 119 70-198 464-586 (693)
470 PRK14263 phosphate ABC transpo 98.0 3.8E-05 8.3E-10 64.5 9.5 28 71-98 31-58 (261)
471 PTZ00243 ABC transporter; Prov 98.0 1.7E-05 3.7E-10 81.5 8.6 29 71-99 1333-1361(1560)
472 KOG0055 Multidrug/pheromone ex 98.0 3.8E-05 8.3E-10 75.6 10.6 40 71-117 376-415 (1228)
473 PRK14255 phosphate ABC transpo 98.0 4E-05 8.7E-10 63.9 9.5 27 71-97 28-54 (252)
474 PF04665 Pox_A32: Poxvirus A32 98.0 5.9E-05 1.3E-09 62.5 10.2 103 76-197 15-143 (241)
475 PRK14259 phosphate ABC transpo 98.0 3.9E-05 8.4E-10 64.8 9.4 28 71-98 36-63 (269)
476 PRK11147 ABC transporter ATPas 98.0 4.7E-05 1E-09 71.9 10.9 28 71-98 342-369 (635)
477 PRK14974 cell division protein 98.0 6.9E-05 1.5E-09 65.3 11.1 39 74-118 140-178 (336)
478 PRK07003 DNA polymerase III su 98.0 9E-05 2E-09 70.2 12.5 27 73-99 37-63 (830)
479 PRK12723 flagellar biosynthesi 98.0 0.00011 2.4E-09 65.2 12.4 78 73-152 173-266 (388)
480 COG1101 PhnK ABC-type uncharac 98.0 4.4E-05 9.5E-10 62.0 8.9 41 59-99 14-57 (263)
481 PRK14261 phosphate ABC transpo 98.0 4.3E-05 9.3E-10 63.8 9.3 27 71-97 29-55 (253)
482 TIGR01271 CFTR_protein cystic 98.0 2.4E-05 5.3E-10 80.2 9.3 28 71-98 1242-1269(1490)
483 COG1618 Predicted nucleotide k 98.0 8.3E-05 1.8E-09 57.6 10.0 24 76-99 7-30 (179)
484 COG2401 ABC-type ATPase fused 98.0 3.7E-05 8.1E-10 67.8 9.1 112 71-193 406-569 (593)
485 COG1474 CDC6 Cdc6-related prot 98.0 7.5E-05 1.6E-09 65.8 11.1 87 63-155 33-138 (366)
486 PRK14243 phosphate transporter 98.0 5.9E-05 1.3E-09 63.5 10.0 27 71-97 33-59 (264)
487 PRK14254 phosphate ABC transpo 98.0 4.2E-05 9.1E-10 65.2 9.2 28 71-98 62-89 (285)
488 PRK14244 phosphate ABC transpo 98.0 0.00014 3.1E-09 60.6 12.1 28 71-98 28-55 (251)
489 PRK09700 D-allose transporter 98.0 3.3E-05 7.2E-10 71.0 9.0 28 71-98 286-313 (510)
490 TIGR02633 xylG D-xylose ABC tr 98.0 7.7E-05 1.7E-09 68.4 11.4 29 70-98 23-51 (500)
491 PRK04195 replication factor C 98.0 7.3E-05 1.6E-09 68.3 11.1 69 74-153 39-111 (482)
492 KOG0726 26S proteasome regulat 98.0 5.1E-05 1.1E-09 64.2 9.1 132 51-196 198-338 (440)
493 PRK15439 autoinducer 2 ABC tra 98.0 4.1E-05 8.8E-10 70.4 9.2 28 70-97 285-312 (510)
494 PRK14237 phosphate transporter 98.0 0.00014 3E-09 61.3 11.7 28 71-98 43-70 (267)
495 PRK10982 galactose/methyl gala 98.0 4E-05 8.6E-10 70.1 9.0 28 71-98 271-298 (491)
496 KOG0739 AAA+-type ATPase [Post 98.0 0.00013 2.8E-09 62.0 11.2 97 41-156 140-241 (439)
497 PRK14245 phosphate ABC transpo 98.0 7.4E-05 1.6E-09 62.3 9.9 27 71-97 26-52 (250)
498 cd01131 PilT Pilus retraction 98.0 0.0001 2.3E-09 59.4 10.5 96 75-194 2-111 (198)
499 TIGR02858 spore_III_AA stage I 98.0 7.1E-05 1.5E-09 63.3 9.8 36 62-99 101-136 (270)
500 COG0593 DnaA ATPase involved i 97.9 4.3E-05 9.4E-10 67.8 8.7 103 73-191 112-217 (408)
No 1
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=2.7e-40 Score=283.31 Aligned_cols=193 Identities=32% Similarity=0.454 Sum_probs=167.6
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCc
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSC 60 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~ 60 (226)
|..++|++.+++||+++||+|++|++.+++.+|.+ .+.+|.++++++ +...+++||+
T Consensus 4 ~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~-~~~~~isTG~ 82 (313)
T TIGR02238 4 LQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKR-KKVLKITTGS 82 (313)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhh-ccCceeCCCC
Confidence 55677999999999999999999999999999987 467888888776 6788999999
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---------------------
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--------------------- 119 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--------------------- 119 (226)
+.||++|+||+++|++++|+|+||+|||+||+|++.++++|.+.++.+++|+|||+|..
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l 162 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVL 162 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhc
Confidence 99999999999999999999999999999999999999999888888899999998841
Q ss_pred ---------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464 120 ---------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187 (226)
Q Consensus 120 ---------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~ 187 (226)
+..++++.+..+...+.+. ++++|||||++++++.++. +...|++.+.+++..|+++|+++|++||+
T Consensus 163 ~~i~~~~~~~~e~~~~~l~~l~~~i~~~-~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvi 241 (313)
T TIGR02238 163 DNILYARAYTSEHQMELLDYLAAKFSEE-PFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFV 241 (313)
T ss_pred CcEEEecCCCHHHHHHHHHHHHHHhhcc-CCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 1223334455555556554 7999999999999988665 36678888999999999999999999999
Q ss_pred eccccccCCC
Q 036464 188 PNLATTANLA 197 (226)
Q Consensus 188 ~nq~~~~~~~ 197 (226)
|||++++++.
T Consensus 242 tNqv~~~~~~ 251 (313)
T TIGR02238 242 TNQVQADPGA 251 (313)
T ss_pred ECceEecCCc
Confidence 9999998764
No 2
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=2e-40 Score=286.19 Aligned_cols=194 Identities=31% Similarity=0.409 Sum_probs=168.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCc
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSC 60 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~ 60 (226)
|..++|++.+++||+++||+|++|++.+++.+|++ .+.+|.++++++ +...+++||+
T Consensus 34 l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~~-~~~~~isTG~ 112 (344)
T PLN03187 34 LISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALLKR-KSVVRITTGS 112 (344)
T ss_pred HhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHhhh-ccCceecCCc
Confidence 44567999999999999999999999999999987 467888988876 6788999999
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc----------------------
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---------------------- 118 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---------------------- 118 (226)
+.||++|+||++.|++++|+|+||+||||||+|+|.++++|.+.++.+++|+|||+|.
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l 192 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVL 192 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhc
Confidence 9999999999999999999999999999999999999999988888889999999874
Q ss_pred --------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464 119 --------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE 187 (226)
Q Consensus 119 --------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~ 187 (226)
++..++...+..+...+.+. ++++|||||++++++.++. +...|++.+.+++..|+++|+++|++||+
T Consensus 193 ~~I~~~~~~~~e~~~~~l~~l~~~i~~~-~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvv 271 (344)
T PLN03187 193 DNIIYARAYTYEHQYNLLLGLAAKMAEE-PFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYM 271 (344)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHHHhc-CCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 11233334455566666654 7999999999999998664 36678888999999999999999999999
Q ss_pred eccccccCCCC
Q 036464 188 PNLATTANLAE 198 (226)
Q Consensus 188 ~nq~~~~~~~~ 198 (226)
|||++++++++
T Consensus 272 TNqv~~~~~~~ 282 (344)
T PLN03187 272 TNQVIADPGGG 282 (344)
T ss_pred EecEEEcCCcc
Confidence 99999987653
No 3
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=275.07 Aligned_cols=192 Identities=31% Similarity=0.411 Sum_probs=165.9
Q ss_pred CCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCch
Q 036464 4 SKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCA 61 (226)
Q Consensus 4 ~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~ 61 (226)
...+|++.+++||+++||+|++|++.+++.+|++ .+.+|.++++++ .+..+++||++
T Consensus 27 ~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~~-~~~~~isTG~~ 105 (337)
T PTZ00035 27 QSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEAR-KNIIRITTGST 105 (337)
T ss_pred hcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHhh-ccCccccCCcH
Confidence 3455999999999999999999999999999987 467889998876 67889999999
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------------------- 119 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------------------- 119 (226)
.||++|+||+++|++++|+|+||+|||+||++++..+.+|.+.++.+++|+|||+|..
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~ 185 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLD 185 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhh
Confidence 9999999999999999999999999999999999999988888888899999998741
Q ss_pred --------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464 120 --------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188 (226)
Q Consensus 120 --------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~ 188 (226)
+..+++..+..+...+.+ .++++|||||++++++.++. +...|++.+.+++..|+++|+++|++||+|
T Consensus 186 nI~~~~~~~~e~~~~~l~~~~~~l~~-~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 186 NIAYARAYNHEHQMQLLSQAAAKMAE-ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred ceEEEccCCHHHHHHHHHHHHHHhhc-cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 112333344455555554 48999999999999988665 466788889999999999999999999999
Q ss_pred ccccccCCC
Q 036464 189 NLATTANLA 197 (226)
Q Consensus 189 nq~~~~~~~ 197 (226)
||+++++++
T Consensus 265 Nqv~~~~~~ 273 (337)
T PTZ00035 265 NQVMADVDG 273 (337)
T ss_pred cceEEecCC
Confidence 999998764
No 4
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=5.8e-38 Score=271.15 Aligned_cols=212 Identities=29% Similarity=0.365 Sum_probs=170.6
Q ss_pred CCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCch
Q 036464 4 SKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCA 61 (226)
Q Consensus 4 ~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~ 61 (226)
..++|++.+++||+++||.|++|++.+++.+|++ .+.+|.++++++ ....+++||++
T Consensus 32 ~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~~~~~~~ta~~~~~~~-~~~~~i~tG~~ 110 (342)
T PLN03186 32 QASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFTTASQLHAQR-QEIIQITTGSR 110 (342)
T ss_pred HhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHhhcc-cCcceeCCCCH
Confidence 4456999999999999999999999999999987 345666776665 56789999999
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------------------- 119 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------------------- 119 (226)
.||++|+||+++|++++|+|+||+|||+||+++|.++++|...++.+++|+|||+|..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~ 190 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLE 190 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhcc
Confidence 9999999999999999999999999999999999999988877777789999998841
Q ss_pred --------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464 120 --------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP 188 (226)
Q Consensus 120 --------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~ 188 (226)
+..++...+..+...+.+ .++++|||||++++++.++. +...|++.+.+++..|+++|+++|++||+|
T Consensus 191 ~i~~~~~~~~e~~~~ll~~~~~~~~~-~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviT 269 (342)
T PLN03186 191 NVAYARAYNTDHQSELLLEAASMMAE-TRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVIT 269 (342)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHhhc-cCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 112233344445455554 48999999999999987654 356777889999999999999999999999
Q ss_pred ccccccCCCCC--CcCCcCCCCchhHHHHHh
Q 036464 189 NLATTANLAES--CLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 189 nq~~~~~~~~~--~~~~~~~sg~~~~~~~~~ 217 (226)
||++.++++.. ..+...+.|...+...++
T Consensus 270 Nqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~ 300 (342)
T PLN03186 270 NQVVAQVDGSAFFAGPQLKPIGGNIMAHAST 300 (342)
T ss_pred cCEEEccCCccccCCCccccchhHHHHhhcc
Confidence 99998887632 223335555554544443
No 5
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=1.5e-37 Score=266.97 Aligned_cols=214 Identities=29% Similarity=0.365 Sum_probs=171.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecC
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTS 59 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg 59 (226)
.|..++|++.+++||+++||+|++|++.+++.+|++ .+.+|.++++++ ....+++||
T Consensus 3 ~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~-~~~~~~~tg 81 (316)
T TIGR02239 3 KLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRR-QEVIQLTTG 81 (316)
T ss_pred hhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcc-cccceeCCC
Confidence 467788999999999999999999999999999987 345677776655 567899999
Q ss_pred chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--------------------
Q 036464 60 CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------------- 119 (226)
Q Consensus 60 ~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------------- 119 (226)
++.||.+|+||+++|++++|+|+||+|||+||++++.++++|...++.+++|+|||+|..
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~ 161 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDV 161 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHh
Confidence 999999999999999999999999999999999999999888777777789999998741
Q ss_pred ----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 120 ----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 120 ----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
+..++...++.+...+.+ .++++|||||++++|+.++. +...|+..+.+++..|+++|++++++||
T Consensus 162 l~~i~~~~~~~~~~~~~~l~~~~~~~~~-~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv 240 (316)
T TIGR02239 162 LDNVAYARAYNTDHQLQLLQQAAAMMSE-SRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV 240 (316)
T ss_pred hccEEEEecCChHHHHHHHHHHHHhhcc-CCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 112222334444455544 48999999999999987664 3456778889999999999999999999
Q ss_pred EeccccccCCCCC--C-cCCcCCCCchhHHHHHh
Q 036464 187 EPNLATTANLAES--C-LTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 187 ~~nq~~~~~~~~~--~-~~~~~~sg~~~~~~~~~ 217 (226)
+|||++.++++.. + ....++.|...+.+.++
T Consensus 241 ~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~ 274 (316)
T TIGR02239 241 ITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHAST 274 (316)
T ss_pred EECceEEecCCccccccCCCCcCCchHHHHhhcc
Confidence 9999998887541 1 22345566555544443
No 6
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=4.1e-39 Score=260.61 Aligned_cols=190 Identities=37% Similarity=0.520 Sum_probs=174.1
Q ss_pred CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCchhHHH
Q 036464 8 ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCADLDN 65 (226)
Q Consensus 8 l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~~LD~ 65 (226)
+....+.||+..|++|++.++-.+.+-|.. ++.+|+++++++ +...+|+||++.||.
T Consensus 28 i~~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~r-~~v~~ItTgs~~lD~ 106 (335)
T KOG1434|consen 28 INVTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQR-KTVGSITTGSSALDD 106 (335)
T ss_pred cchhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhhh-hccceeecchHHHhh
Confidence 445667888889988888877766544333 678999999998 788999999999999
Q ss_pred hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------------------
Q 036464 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------------- 118 (226)
Q Consensus 66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------------- 118 (226)
+|||||+.-+++|++|.||+||||+++++|..+++|.++|+.+++++|||+|.
T Consensus 107 ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~~LdNI~y 186 (335)
T KOG1434|consen 107 ILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAERFKVDPDFTLDNILY 186 (335)
T ss_pred hhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999883
Q ss_pred ---cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 119 ---GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 119 ---~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++.+|+++++.+.++++++.++++||||||+++||.+++ ++++|++.+++++.+|.++|+++|++|++|||++
T Consensus 187 ~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvt 266 (335)
T KOG1434|consen 187 FRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVT 266 (335)
T ss_pred HHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEeccee
Confidence 6788999999999999999889999999999999999998 8999999999999999999999999999999999
Q ss_pred ccCCCC
Q 036464 193 TANLAE 198 (226)
Q Consensus 193 ~~~~~~ 198 (226)
++++.+
T Consensus 267 tdpga~ 272 (335)
T KOG1434|consen 267 TDPGAG 272 (335)
T ss_pred cCCccc
Confidence 998874
No 7
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=4.9e-36 Score=250.91 Aligned_cols=176 Identities=43% Similarity=0.579 Sum_probs=142.6
Q ss_pred chHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 38 ~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+|+||.++++++ +...+|+||++.||.+|+||++.|.++||+|+||+|||+||+|+|.++++|.+.++.+++|+|||+|
T Consensus 3 ~f~ta~~~~~~~-~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe 81 (256)
T PF08423_consen 3 GFQTAAELLEQR-KRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE 81 (256)
T ss_dssp SSEEHHHHHHHH-HTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS
T ss_pred CcccHHHHHHHh-hcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC
Confidence 468999999887 6889999999999999999999999999999999999999999999999999888899999999988
Q ss_pred c------------------------------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHH
Q 036464 118 L------------------------------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRT 164 (226)
Q Consensus 118 ~------------------------------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~ 164 (226)
. ++..++...++.+...+.+. +++||||||++++|+.++. +...|.
T Consensus 82 ~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~-~ikLIVIDSIaalfr~e~~~~~~~~~R~ 160 (256)
T PF08423_consen 82 GTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSES-KIKLIVIDSIAALFRSEFSGRGDLAERQ 160 (256)
T ss_dssp SSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSHHHHHHSGSTTTHHHHH
T ss_pred CCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHhhcccc-ceEEEEecchHHHHHHHHccchhhHHHH
Confidence 4 23344455667777777664 8999999999999998764 577899
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCC--cCCcCCCCchhHHHH
Q 036464 165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC--LTCLRDSGSRKAVAA 215 (226)
Q Consensus 165 ~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~--~~~~~~sg~~~~~~~ 215 (226)
+.+.+++..|+++|++++++||+|||+++++++... ....++.+...+...
T Consensus 161 ~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~ 213 (256)
T PF08423_consen 161 RMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHA 213 (256)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhh
Confidence 999999999999999999999999999998887521 123344554444433
No 8
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=6.5e-35 Score=251.57 Aligned_cols=196 Identities=36% Similarity=0.546 Sum_probs=162.6
Q ss_pred CCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh--c---------------------hHhHHHHHHHhhcccCcee
Q 036464 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR--G---------------------TQTAWDMLQEEQESLARIT 57 (226)
Q Consensus 2 ~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~--~---------------------~~~a~~l~~~~~~~~~~i~ 57 (226)
||+++| +++.+.++|.++||.|++|++.+++.+|.+ + +.++.++++++ ++..+++
T Consensus 7 ~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~-ks~~~~~ 85 (317)
T PRK04301 7 DLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERR-KNVGKIT 85 (317)
T ss_pred cHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhh-ccCCccC
Confidence 788998 999999999999999999999999999876 1 13444554444 5677899
Q ss_pred cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------------
Q 036464 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------------ 119 (226)
Q Consensus 58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------------ 119 (226)
||++.||.+|+||+++|.+++|+|+||+|||+||+|++.++++|.+.++.+++|+|||+|..
T Consensus 86 Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~ 165 (317)
T PRK04301 86 TGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPD 165 (317)
T ss_pred CCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999999999988877777889999998741
Q ss_pred ------------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 120 ------------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 120 ------------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
...++...++.+..++.+..++++|||||++++++.++. +...|++.+.+++..|+++|+++|++
T Consensus 166 ~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~va 245 (317)
T PRK04301 166 EVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAA 245 (317)
T ss_pred hhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 112223345566666665358999999999999887554 35567777889999999999999999
Q ss_pred EEEeccccccCCCC
Q 036464 185 LLEPNLATTANLAE 198 (226)
Q Consensus 185 vi~~nq~~~~~~~~ 198 (226)
||+|||++++++..
T Consensus 246 vl~tnqv~~~~~~~ 259 (317)
T PRK04301 246 VVVTNQVMARPDAF 259 (317)
T ss_pred EEEeceEEeccccc
Confidence 99999999876543
No 9
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=2.9e-34 Score=246.85 Aligned_cols=194 Identities=38% Similarity=0.579 Sum_probs=160.6
Q ss_pred CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------------------chHhHHHHHHHhhcccCceec
Q 036464 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQESLARITT 58 (226)
Q Consensus 3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------------------~~~~a~~l~~~~~~~~~~i~T 58 (226)
|+++| +++.+.++|.++||.|++|++.+++.+|.+ .+.++.++++++ +...+++|
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~-~s~~~~~T 79 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERR-KTIGKITT 79 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhh-ccCCeecC
Confidence 46778 999999999999999999999999999876 123455555553 56788999
Q ss_pred CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc-----------------
Q 036464 59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY----------------- 121 (226)
Q Consensus 59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~----------------- 121 (226)
|++.+|.+|+||++.|.+++|+|+||+|||+||+|+|.++++|.+.++.+++|+|||+|....
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~ 159 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDE 159 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999998877766777999999884111
Q ss_pred -------------hHHHHHHHHHHHHHhhCC-CceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 122 -------------TEQSAVINYLDKFVSEHK-DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 122 -------------~~~~~~l~~l~~~l~~~~-~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
.+++..++.+.+++.+.. ++++|||||++++++.++. +...|++.+.+++..|++++++++++
T Consensus 160 ~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~ 239 (310)
T TIGR02236 160 VLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAA 239 (310)
T ss_pred HhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence 122223456666776643 4899999999999887654 35667788899999999999999999
Q ss_pred EEEeccccccCCC
Q 036464 185 LLEPNLATTANLA 197 (226)
Q Consensus 185 vi~~nq~~~~~~~ 197 (226)
||+|||++++++.
T Consensus 240 v~~tnqv~~~~~~ 252 (310)
T TIGR02236 240 VVVTNQVMARPDA 252 (310)
T ss_pred EEEeceeeecCcc
Confidence 9999999998764
No 10
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.97 E-value=1.3e-31 Score=219.87 Aligned_cols=195 Identities=34% Similarity=0.430 Sum_probs=153.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------c------------hHhHHHHHHHhh---c--c
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR-----------G------------TQTAWDMLQEEQ---E--S 52 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------~------------~~~a~~l~~~~~---~--~ 52 (226)
||+...-+++.++..-+.+...++++++..+..|+.+ . ...+.+++++.. . .
T Consensus 1 Mdl~l~~ln~~i~~dee~a~llsa~evl~vs~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~~~~~~e~~~~~s~~~ 80 (351)
T KOG1564|consen 1 MDLFLDQLNKHIREDEEQANLLSAEEVLTVSKVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQNLKLKPENLCSRSKTN 80 (351)
T ss_pred CCchhccccHHHHHHHHHhhhcCHHHhcCcCcccceecChhHHHHHHHhccHHHHHHHHHHHHHHHHhcchhhhccccCC
Confidence 8888888999999999999999999888877665544 0 111112222221 1 2
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||+..||+.|+|||+.+.+|||+|++|+||||||+|++..+++|.+.|+.+++++||.+|..
T Consensus 81 ~~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~ 160 (351)
T KOG1564|consen 81 RSKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL 160 (351)
T ss_pred chhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence 3469999999999999999999999999999999999999999999999999999999999998840
Q ss_pred --------------------------CchHHHHHH-HHHHHHHhhCCCceEEEEcCCchhhhcCcC----ChHHHHHHHH
Q 036464 120 --------------------------FYTEQSAVI-NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV----DLALRTRVLS 168 (226)
Q Consensus 120 --------------------------~~~~~~~~l-~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~----~~~~r~~~l~ 168 (226)
+...+...+ ..+..++. .+++++|||||++++||.+++ +...|.+.+.
T Consensus 161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~-r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~ 239 (351)
T KOG1564|consen 161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLN-RKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLF 239 (351)
T ss_pred ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceec-cCcceEEEEehhhHHHHHHhccChhhhhhHHHHHH
Confidence 001111111 12223333 347999999999999998876 3457899999
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 169 GIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 169 ~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
++..+|+.+|.+|+++|+++||+++...
T Consensus 240 rla~~Lr~LA~~~~~aVV~~NQVtd~~~ 267 (351)
T KOG1564|consen 240 RLAGKLRQLASKFDLAVVCANQVTDRVE 267 (351)
T ss_pred HHHHHHHHHHHhcCccEEEeeccccccc
Confidence 9999999999999999999999998744
No 11
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.96 E-value=3.8e-28 Score=200.67 Aligned_cols=142 Identities=41% Similarity=0.568 Sum_probs=118.0
Q ss_pred eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------
Q 036464 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------- 120 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------------- 120 (226)
++||++.||.+|+||+++|++++|+|+||+|||+||++++.+.+.|..+++.+++|+||++|...
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 58999999999999999999999999999999999999999988777777778999999987410
Q ss_pred ---------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcC
Q 036464 121 ---------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFS 182 (226)
Q Consensus 121 ---------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~ 182 (226)
..+....++.+...+.+.+++++|||||++++++..+.. ...|.+.+.+++..|+++|++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111223445666666665589999999999988754432 36788889999999999999999
Q ss_pred CEEEEeccccccCCC
Q 036464 183 LALLEPNLATTANLA 197 (226)
Q Consensus 183 ~~vi~~nq~~~~~~~ 197 (226)
++||+|||+++..+.
T Consensus 161 ~avl~tn~~~~~~~~ 175 (235)
T cd01123 161 VAVVITNQVTARPDG 175 (235)
T ss_pred CEEEEeccEeecCCc
Confidence 999999999987654
No 12
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.3e-27 Score=199.02 Aligned_cols=152 Identities=31% Similarity=0.370 Sum_probs=127.3
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------ 118 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------ 118 (226)
+....|+||+..||.+|+||+|.|.+++|+||+|+||||+|+|++.++++ .+++|+|||+|.
T Consensus 37 ~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~------~g~~a~fIDtE~~l~p~r~~~l~~ 110 (279)
T COG0468 37 EDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK------PGGKAAFIDTEHALDPERAKQLGV 110 (279)
T ss_pred hccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 55899999999999999999999999999999999999999999999984 567999999984
Q ss_pred -----------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 119 -----------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 119 -----------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
++..+|+..++.+.....+ ++++|||||++++++.++. ....+++.+.+.++.|.++++++|++
T Consensus 111 ~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~--~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~ 188 (279)
T COG0468 111 DLLDNLLVSQPDTGEQQLEIAEKLARSGAE--KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTA 188 (279)
T ss_pred hhhcceeEecCCCHHHHHHHHHHHHHhccC--CCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 2233444445555555544 6999999999999998764 37789999999999999999999999
Q ss_pred EEEeccccccCCCCCCcCCcCCCCch
Q 036464 185 LLEPNLATTANLAESCLTCLRDSGSR 210 (226)
Q Consensus 185 vi~~nq~~~~~~~~~~~~~~~~sg~~ 210 (226)
|++|||+..+++.....+.....|.+
T Consensus 189 vi~~NQv~~k~~~~f~~~~~~~GG~~ 214 (279)
T COG0468 189 VIFTNQVRAKIGVMFGDPETTTGGNA 214 (279)
T ss_pred EEEECceeeecCcccCCcccCCCchH
Confidence 99999999999887655444444443
No 13
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.95 E-value=1.3e-26 Score=190.44 Aligned_cols=142 Identities=42% Similarity=0.599 Sum_probs=112.1
Q ss_pred eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch-------------
Q 036464 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT------------- 122 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~------------- 122 (226)
++||++.||++|+||+++|++++|+|+||+|||+||++++.+.+.+.++++.+.+|+||++|.....
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 5899999999999999999999999999999999999999998866555566799999998741111
Q ss_pred -----------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcC
Q 036464 123 -----------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFS 182 (226)
Q Consensus 123 -----------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~ 182 (226)
+....++.+.+.+. ..++++|||||++++++..... ...|.+.+.+++..|++++++++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~ 159 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMS-SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFN 159 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhh-cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11112222222222 3489999999999998765432 35677889999999999999999
Q ss_pred CEEEEeccccccCCCC
Q 036464 183 LALLEPNLATTANLAE 198 (226)
Q Consensus 183 ~~vi~~nq~~~~~~~~ 198 (226)
++||+|||+++..++.
T Consensus 160 ~~vi~tnq~~~~~~~~ 175 (226)
T cd01393 160 VAVVFTNQVRAKVDVM 175 (226)
T ss_pred cEEEEEEEEeeecccc
Confidence 9999999999877643
No 14
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.94 E-value=1.1e-25 Score=185.04 Aligned_cols=137 Identities=33% Similarity=0.459 Sum_probs=108.7
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-------------
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------- 120 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~------------- 120 (226)
++++||+++||++|+||+++|++++|+|+||+|||+||++++.+++ ..+.+|+||++|...
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~------~~~~~v~yi~~e~~~~~r~~~~~~~~~~ 76 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA------KNGKKVIYIDTEGLSPERFKQIAGEDFE 76 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEECCCCCHHHHHHHHhhChH
Confidence 5799999999999999999999999999999999999999999987 467899999998200
Q ss_pred -------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc---CChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 121 -------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF---VDLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 121 -------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~---~~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
..++...++.+..++. .++++|||||++++++..+ .+...+.+.+.+++..|+++++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~ 154 (225)
T PRK09361 77 ELLSNIIIFEPSSFEEQSEAIRKAEKLAK--ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLA 154 (225)
T ss_pred hHhhCeEEEeCCCHHHHHHHHHHHHHHHH--hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 0011122333444443 4799999999999887542 233455667888888999999999999
Q ss_pred EEEeccccccCCCC
Q 036464 185 LLEPNLATTANLAE 198 (226)
Q Consensus 185 vi~~nq~~~~~~~~ 198 (226)
|++|||++...++.
T Consensus 155 vi~tnq~~~~~~~~ 168 (225)
T PRK09361 155 VVITNQVYSDIDSD 168 (225)
T ss_pred EEEEccceecCCCC
Confidence 99999999876643
No 15
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.93 E-value=1.7e-25 Score=191.57 Aligned_cols=150 Identities=24% Similarity=0.263 Sum_probs=116.2
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------- 119 (226)
....+++||++.||.+|+ ||+|+|.+++|+||||+|||+||++++.+++ ..+++|+|||+|..
T Consensus 31 ~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~------~~g~~~vyId~E~~~~~~~a~~lG 104 (325)
T cd00983 31 QDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ------KLGGTVAFIDAEHALDPVYAKKLG 104 (325)
T ss_pred cCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCCEEEECccccHHHHHHHHcC
Confidence 467899999999999999 9999999999999999999999999999987 47889999998741
Q ss_pred -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464 120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~ 181 (226)
...++ .+..++.++++ ..+++|||||++++++ .+.+. ...+.+.+.+.++.|..+++++
T Consensus 105 vd~~~l~v~~p~~~eq--~l~i~~~li~s-~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~ 181 (325)
T cd00983 105 VDLDNLLISQPDTGEQ--ALEIADSLVRS-GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKS 181 (325)
T ss_pred CCHHHheecCCCCHHH--HHHHHHHHHhc-cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 11111 24445555655 4899999999999985 34331 1223456788899999999999
Q ss_pred CCEEEEeccccccCCCCCCcCCcCCCCc
Q 036464 182 SLALLEPNLATTANLAESCLTCLRDSGS 209 (226)
Q Consensus 182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~ 209 (226)
++++|+|||++..++.....+.....|.
T Consensus 182 ~~~vI~tNQvr~~ig~~~g~~e~~~GG~ 209 (325)
T cd00983 182 NTTVIFINQLREKIGVMFGNPETTTGGN 209 (325)
T ss_pred CCEEEEEEccccccccccCCCccCCCch
Confidence 9999999999998765433333333443
No 16
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.93 E-value=2.3e-25 Score=182.29 Aligned_cols=134 Identities=33% Similarity=0.460 Sum_probs=105.0
Q ss_pred eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------
Q 036464 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------- 120 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------------- 120 (226)
++||++.||.+|+||+++|++++|+|+||+|||+||++++.+.+ ..+++|+||++|...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~------~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~ 74 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA------GQGKKVAYIDTEGLSSERFRQIAGDRPERA 74 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEECCCCCHHHHHHHHhHChHhh
Confidence 58999999999999999999999999999999999999999987 468899999986310
Q ss_pred -----------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 121 -----------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 121 -----------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
..++...++.+...++ .++++|||||++++++....+ ...+...+.+++..|+.+|++++++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi 152 (218)
T cd01394 75 ASSIIVFEPMDFNEQGRAIQETETFAD--EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVV 152 (218)
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHh--cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 0111122233333333 248999999999987654432 234556778888899999999999999
Q ss_pred EeccccccCCC
Q 036464 187 EPNLATTANLA 197 (226)
Q Consensus 187 ~~nq~~~~~~~ 197 (226)
+|||+++..++
T Consensus 153 ~t~q~~~~~~~ 163 (218)
T cd01394 153 ITNQVYSDVGS 163 (218)
T ss_pred EecCCEEcCCC
Confidence 99999877663
No 17
>PRK09354 recA recombinase A; Provisional
Probab=99.93 E-value=2.5e-25 Score=191.92 Aligned_cols=149 Identities=24% Similarity=0.264 Sum_probs=115.0
Q ss_pred ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464 52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------- 119 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------- 119 (226)
...+++||++.||.+|+ ||+|+|++++|+||||+|||+||++++.+++ ..+++|+|||+|..
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~------~~G~~~~yId~E~s~~~~~a~~lGv 110 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ------KAGGTAAFIDAEHALDPVYAKKLGV 110 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEECCccchHHHHHHHcCC
Confidence 57899999999999999 9999999999999999999999999999998 57899999998841
Q ss_pred ----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHcC
Q 036464 120 ----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKFS 182 (226)
Q Consensus 120 ----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~~ 182 (226)
...++ .+..+..++++ ..+++|||||++++++ .+++. ...+.+.+.+.++.|..+++++|
T Consensus 111 dld~lli~qp~~~Eq--~l~i~~~li~s-~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~ 187 (349)
T PRK09354 111 DIDNLLVSQPDTGEQ--ALEIADTLVRS-GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSN 187 (349)
T ss_pred CHHHeEEecCCCHHH--HHHHHHHHhhc-CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 11121 24455566655 4899999999999884 33331 12344567788899999999999
Q ss_pred CEEEEeccccccCCCCCCcCCcCCCCc
Q 036464 183 LALLEPNLATTANLAESCLTCLRDSGS 209 (226)
Q Consensus 183 ~~vi~~nq~~~~~~~~~~~~~~~~sg~ 209 (226)
+++|+|||++.+++.....+.....|.
T Consensus 188 itvI~tNQvr~~ig~~~g~pe~~~GG~ 214 (349)
T PRK09354 188 TTVIFINQIREKIGVMFGNPETTTGGN 214 (349)
T ss_pred cEEEEEEeeeeccccccCCCCcCCCch
Confidence 999999999998764333333333343
No 18
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.93 E-value=5.6e-25 Score=188.30 Aligned_cols=151 Identities=23% Similarity=0.245 Sum_probs=115.8
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------- 119 (226)
....++|||++.||.+|+ ||+|+|++++|+||||+|||+||++++.+++ ..+++|+|||+|..
T Consensus 31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~------~~g~~v~yId~E~~~~~~~a~~lG 104 (321)
T TIGR02012 31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ------KAGGTAAFIDAEHALDPVYARKLG 104 (321)
T ss_pred ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEEcccchhHHHHHHHcC
Confidence 457899999999999999 9999999999999999999999999999987 46899999998731
Q ss_pred -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464 120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~ 181 (226)
...+ ..+..+..++++ ..+++|||||++++++ .+++. ...+.+.+.+.++.|..+++++
T Consensus 105 vd~~~l~v~~p~~~e--q~l~~~~~li~~-~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~ 181 (321)
T TIGR02012 105 VDIDNLLVSQPDTGE--QALEIAETLVRS-GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKS 181 (321)
T ss_pred CCHHHeEEecCCCHH--HHHHHHHHHhhc-cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhC
Confidence 1111 124445555554 4899999999999884 23321 1234456678899999999999
Q ss_pred CCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464 182 SLALLEPNLATTANLAESCLTCLRDSGSR 210 (226)
Q Consensus 182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~~ 210 (226)
|+++|+|||++..++.....+.....|.+
T Consensus 182 ~~tvi~tNQvr~~~g~~~~~~e~~~GG~a 210 (321)
T TIGR02012 182 NTTAIFINQIREKIGVMFGNPETTTGGRA 210 (321)
T ss_pred CCEEEEEecceeccCcccCCCccCcCccH
Confidence 99999999999987654444444444443
No 19
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-25 Score=190.90 Aligned_cols=135 Identities=29% Similarity=0.401 Sum_probs=120.7
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV--- 127 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~--- 127 (226)
++..+++||+.+||++||||+.+|++++|.|+||.|||||++|++..++ ..+ +|+|+++| ++.+|+.+
T Consensus 70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA------~~~-~vLYVsGE--ES~~QiklRA~ 140 (456)
T COG1066 70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA------KRG-KVLYVSGE--ESLQQIKLRAD 140 (456)
T ss_pred eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH------hcC-cEEEEeCC--cCHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999998 344 99999999 77776532
Q ss_pred ----------------HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 128 ----------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 128 ----------------l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
++++.+.+++. +|+++|||||+.++.++.+..+..-.++++....|.++|++.|++++++-|+
T Consensus 141 RL~~~~~~l~l~aEt~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 141 RLGLPTNNLYLLAETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred HhCCCccceEEehhcCHHHHHHHHHhc-CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 45677777765 8999999999999998888777788899999999999999999999999999
Q ss_pred cccC
Q 036464 192 TTAN 195 (226)
Q Consensus 192 ~~~~ 195 (226)
||.-
T Consensus 220 TKeG 223 (456)
T COG1066 220 TKEG 223 (456)
T ss_pred cccc
Confidence 9854
No 20
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.91 E-value=8.6e-24 Score=171.85 Aligned_cols=127 Identities=33% Similarity=0.462 Sum_probs=100.6
Q ss_pred HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------------------
Q 036464 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-------------------- 122 (226)
Q Consensus 63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~-------------------- 122 (226)
||.+|+||+++|++++|+|+||+|||+||++++.+.+ ..+++|+||++|. ...
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~------~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~ 73 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIV 73 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEE
Confidence 6999999999999999999999999999999999987 4678999999983 111
Q ss_pred -------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 123 -------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 123 -------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
++...++.+.+.+.+. ++++|||||++++++.+..+ ...+.+.+.+++..|+++++++|+++++|||++..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~-~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 74 FEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred EECCCHHHHHHHHHHHHHHHhhc-CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 1112244445555554 79999999999988755432 23455677788889999999999999999999876
Q ss_pred CCC
Q 036464 195 NLA 197 (226)
Q Consensus 195 ~~~ 197 (226)
.++
T Consensus 153 ~~~ 155 (209)
T TIGR02237 153 VNN 155 (209)
T ss_pred cCC
Confidence 654
No 21
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.91 E-value=1.1e-23 Score=184.50 Aligned_cols=135 Identities=30% Similarity=0.396 Sum_probs=110.6
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA---- 126 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~---- 126 (226)
.+..+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+.+ ..+++|+|++.| +..+++.
T Consensus 59 ~~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a------~~g~~VlYvs~E--Es~~qi~~Ra~ 130 (372)
T cd01121 59 EEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA------KRGGKVLYVSGE--ESPEQIKLRAD 130 (372)
T ss_pred cccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEEECC--cCHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999887 456899999987 3344331
Q ss_pred ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.++.+.+.+.+. ++++|||||+++++..+.+..+++..++++++..|+++++++++++++++|+
T Consensus 131 rlg~~~~~l~l~~e~~le~I~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 131 RLGISTENLYLLAETNLEDILASIEEL-KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HcCCCcccEEEEccCcHHHHHHHHHhc-CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 134555555554 8999999999998766544333345568888999999999999999999999
Q ss_pred ccc
Q 036464 192 TTA 194 (226)
Q Consensus 192 ~~~ 194 (226)
++.
T Consensus 210 tk~ 212 (372)
T cd01121 210 TKE 212 (372)
T ss_pred cCC
Confidence 985
No 22
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.90 E-value=2.4e-23 Score=186.92 Aligned_cols=135 Identities=26% Similarity=0.341 Sum_probs=109.6
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA---- 126 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~---- 126 (226)
++..+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+.+ ..+++|+|++.| +..+|+.
T Consensus 71 ~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a------~~g~kvlYvs~E--Es~~qi~~ra~ 142 (454)
T TIGR00416 71 EEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA------KNQMKVLYVSGE--ESLQQIKMRAI 142 (454)
T ss_pred cccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH------hcCCcEEEEECc--CCHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999887 356799999988 3333321
Q ss_pred ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.++.+.+.+++. ++++|||||+++++..+....+++..++++++..|.++|+++|+++++++|+
T Consensus 143 rlg~~~~~l~~~~e~~~~~I~~~i~~~-~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hv 221 (454)
T TIGR00416 143 RLGLPEPNLYVLSETNWEQICANIEEE-NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHV 221 (454)
T ss_pred HcCCChHHeEEcCCCCHHHHHHHHHhc-CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 134555566554 7999999999998766543333344557788889999999999999999999
Q ss_pred ccc
Q 036464 192 TTA 194 (226)
Q Consensus 192 ~~~ 194 (226)
++.
T Consensus 222 tke 224 (454)
T TIGR00416 222 TKE 224 (454)
T ss_pred ccC
Confidence 874
No 23
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.90 E-value=2.8e-23 Score=186.28 Aligned_cols=135 Identities=30% Similarity=0.415 Sum_probs=110.8
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA---- 126 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~---- 126 (226)
.+..+++||+++||++|+||+++|++++|+|+||+|||+|++|++.+.+ ..+++|+|+++| +..+++.
T Consensus 57 ~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a------~~g~~vlYvs~E--es~~qi~~ra~ 128 (446)
T PRK11823 57 EEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA------AAGGKVLYVSGE--ESASQIKLRAE 128 (446)
T ss_pred ccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEcc--ccHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999886 357899999988 4444431
Q ss_pred ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.++.+.+.+++. ++++|||||++++++.+.+...++..++++++..|.++++++|+++++++|+
T Consensus 129 rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hv 207 (446)
T PRK11823 129 RLGLPSDNLYLLAETNLEAILATIEEE-KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHV 207 (446)
T ss_pred HcCCChhcEEEeCCCCHHHHHHHHHhh-CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 133444555543 7899999999998876554334455667888999999999999999999999
Q ss_pred ccc
Q 036464 192 TTA 194 (226)
Q Consensus 192 ~~~ 194 (226)
++.
T Consensus 208 tk~ 210 (446)
T PRK11823 208 TKE 210 (446)
T ss_pred cCC
Confidence 874
No 24
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.90 E-value=1e-22 Score=173.54 Aligned_cols=184 Identities=28% Similarity=0.375 Sum_probs=147.7
Q ss_pred CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------chHhHHHHHH---HhhcccCceecCchhHHHhhCCCCCCC
Q 036464 8 ISATQRGKLISAGYTSLSSICSASSSDISR----------GTQTAWDMLQ---EEQESLARITTSCADLDNILGGGIGCR 74 (226)
Q Consensus 8 l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------~~~~a~~l~~---~~~~~~~~i~Tg~~~LD~~l~GGi~~G 74 (226)
+++..+.+|+.++|+++.++...+.+++.. +...++..+. +.+.....++||++.||++|+||++.|
T Consensus 32 ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g 111 (326)
T KOG1433|consen 32 ITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPMLQLRSELGFLSTGSKALDKLLGGGIETG 111 (326)
T ss_pred ccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHHHHhhccceeeccchhhhhHhhccCcccC
Confidence 889999999999999999999999998887 2222333333 334678899999999999999999999
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------------------------CchHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------------------------FYTEQ 124 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------------------------~~~~~ 124 (226)
.++||+||||+|||+||+.++..+- +.+.+++|||++.. +..++
T Consensus 112 ~~TEi~G~p~~GKtQlc~~~~v~~~------gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (326)
T KOG1433|consen 112 SLTELVGPPGSGKTQLCHTLAVTCG------GGEGKVLYIDTESTFRLERLTEIAGRSGLRGRDTLSNLMLARAYNLDHQ 185 (326)
T ss_pred ceeEEecCCCccHHHHHHHHHHhcc------CCcceEEEEecchhcccchhhhhhhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999988862 67889999997631 11111
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 125 SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 125 ~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
.........++.+. +..++++||.++.++..+. +...+...+...++.|++++++++++||++||++.++++.
T Consensus 186 l~~~~~a~~~~~~~-~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d~~ 261 (326)
T KOG1433|consen 186 LQLIQEAEIMINQS-RVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVDGA 261 (326)
T ss_pred HHHHHHHHHHhhcc-ceeEEEecccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCceEEEecccccccccc
Confidence 12223333334443 7899999999999987765 4567888889999999999999999999999999999875
No 25
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=189.71 Aligned_cols=139 Identities=25% Similarity=0.320 Sum_probs=112.6
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------- 120 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------- 120 (226)
....+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+.+ ..+++|+||++|...
T Consensus 36 ~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~------~~G~~v~yId~E~t~~~~~A~~lG 109 (790)
T PRK09519 36 QPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGVAAFIDAEHALDPDYAKKLG 109 (790)
T ss_pred cCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEECCccchhHHHHHHcC
Confidence 467899999999999998 9999999999999999999999999999887 578999999987411
Q ss_pred ------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh-hcCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464 121 ------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF-RHGFVD------LALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 121 ------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~-~~~~~~------~~~r~~~l~~~~~~L~~la~~~ 181 (226)
..++ .+..+..++++ .++++|||||+++++ +.+++. ...+++.+.+++..|.++++++
T Consensus 110 vDl~~llv~~~~~~E~--~l~~i~~lv~~-~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~ 186 (790)
T PRK09519 110 VDTDSLLVSQPDTGEQ--ALEIADMLIRS-GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNS 186 (790)
T ss_pred CChhHeEEecCCCHHH--HHHHHHHHhhc-CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 34445555655 489999999999999 455431 2334555678899999999999
Q ss_pred CCEEEEeccccccCCCC
Q 036464 182 SLALLEPNLATTANLAE 198 (226)
Q Consensus 182 ~~~vi~~nq~~~~~~~~ 198 (226)
|++||+|||++..++..
T Consensus 187 nvtvi~TNQv~~~~g~~ 203 (790)
T PRK09519 187 GTTAIFINQLRDKIGVM 203 (790)
T ss_pred CCEEEEEecceecCCCc
Confidence 99999999999988743
No 26
>PHA02542 41 41 helicase; Provisional
Probab=99.88 E-value=6.2e-22 Score=178.23 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=119.3
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------ 119 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------ 119 (226)
....++||++.||++++||+.+|+++.|.|+||+|||+|++++|.+++ ..+.+|+||+.|+.
T Consensus 168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a------~~g~~Vl~fSLEM~~~ql~~Rl~a~~ 241 (473)
T PHA02542 168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL------QQGYNVLYISMEMAEEVIAKRIDANL 241 (473)
T ss_pred CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH------hcCCcEEEEeccCCHHHHHHHHHHHH
Confidence 367899999999999989999999999999999999999999999987 46789999998850
Q ss_pred ---Cc-------hHHH-HH-----------------------HHHHHHHH----hhCC-CceEEEEcCCchhhhcCcC-C
Q 036464 120 ---FY-------TEQS-AV-----------------------INYLDKFV----SEHK-DVKVVIIDSIAFHFRHGFV-D 159 (226)
Q Consensus 120 ---~~-------~~~~-~~-----------------------l~~l~~~l----~~~~-~~~lvVIDsl~~l~~~~~~-~ 159 (226)
.. .+.. .. ...+...+ .+.. ++++||||+++-+-..... .
T Consensus 242 ~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~ 321 (473)
T PHA02542 242 LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVS 321 (473)
T ss_pred cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCC
Confidence 00 0000 00 11122222 1221 3899999999955322111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC--CCcCCcCCCCchhHHHHHh
Q 036464 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE--SCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 160 ~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~--~~~~~~~~sg~~~~~~~~~ 217 (226)
..+|.+.+..+.+.||.+|++++|+||+.+|+++..+.+ +.+.++|+||+++. +||
T Consensus 322 ~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEq--dAD 379 (473)
T PHA02542 322 SENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPA--TAD 379 (473)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHh--hcC
Confidence 235788899999999999999999999999999987654 77889999999654 554
No 27
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.87 E-value=1.6e-21 Score=174.35 Aligned_cols=153 Identities=21% Similarity=0.310 Sum_probs=116.3
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||++++ |+.+|++++|+|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~-----~~g~~v~~fSlEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVAL-----REGKPVLFFSLEMSAEQLGERLLASKS 247 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 5679999999999996 9999999999999999999999999988863 35789999998850
Q ss_pred ----------C-chHHHH----------------------HHHHHHH----HHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 ----------F-YTEQSA----------------------VINYLDK----FVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 ----------~-~~~~~~----------------------~l~~l~~----~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
. ..+... .++.+.. +..+.+++++||||+++.+.... ...
T Consensus 248 ~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~---~~~ 324 (421)
T TIGR03600 248 GINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GRD 324 (421)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCC---CCC
Confidence 0 000000 0222222 22233369999999999654321 124
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~ 214 (226)
|...+.++.+.||.+|++++++||+++|+++..+. .+.+.++|+||++...+
T Consensus 325 ~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~A 380 (421)
T TIGR03600 325 RNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDA 380 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccC
Confidence 67789999999999999999999999999986643 46677899999965543
No 28
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.87 E-value=1.6e-21 Score=166.59 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=112.9
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------- 119 (226)
.....+|||++.||.+|+ ||+|+|.++||+|++++|||+|+++++.+++ ..+..|+|||.|..
T Consensus 29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q------~~g~~~a~ID~e~~ld~~~a~~lG 102 (322)
T PF00154_consen 29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ------KQGGICAFIDAEHALDPEYAESLG 102 (322)
T ss_dssp CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTT-EEEEEESSS---HHHHHHTT
T ss_pred cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhh------cccceeEEecCcccchhhHHHhcC
Confidence 456889999999999999 9999999999999999999999999999887 46899999998741
Q ss_pred -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhc-----CcC--ChHHHHHHHHHHHHHHHHHHHHc
Q 036464 120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH-----GFV--DLALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~-----~~~--~~~~r~~~l~~~~~~L~~la~~~ 181 (226)
+..+ ..+..++++++. ..+++|||||+.++... +.. ....+.+.|.+.++.+.....+.
T Consensus 103 vdl~rllv~~P~~~E--~al~~~e~lirs-g~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~ 179 (322)
T PF00154_consen 103 VDLDRLLVVQPDTGE--QALWIAEQLIRS-GAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKS 179 (322)
T ss_dssp --GGGEEEEE-SSHH--HHHHHHHHHHHT-TSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEecCCcHH--HHHHHHHHHhhc-ccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhh
Confidence 1122 235566666665 47899999999987543 111 23467888999999999999999
Q ss_pred CCEEEEeccccccCCCCCCcCCcCCCCc
Q 036464 182 SLALLEPNLATTANLAESCLTCLRDSGS 209 (226)
Q Consensus 182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~ 209 (226)
|+++|++||++.+++...+.|.....|.
T Consensus 180 ~~~~i~INQ~R~~ig~~~g~~~~t~GG~ 207 (322)
T PF00154_consen 180 NTTLIFINQVRDKIGVMFGNPETTPGGR 207 (322)
T ss_dssp T-EEEEEEEESSSSSSSSSSSSCCTSHH
T ss_pred ceEEEEeehHHHHHhhccCCCcCCCCCc
Confidence 9999999999999987655555545554
No 29
>PRK05748 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.9e-21 Score=175.14 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=117.5
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------ 119 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------ 119 (226)
...+++||++.||.+++ |+++|+++.|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 182 ~~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~-----~~g~~v~~fSlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVAT-----KTDKNVAIFSLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHH-----hCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 35689999999999985 9999999999999999999999999999863 35789999998750
Q ss_pred -----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464 120 -----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161 (226)
Q Consensus 120 -----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~ 161 (226)
. ..+.. .....+.++..+.+++++||||+++.+- .......
T Consensus 256 ~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~-~~~~~~~ 334 (448)
T PRK05748 256 GNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ-GSGRSGE 334 (448)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC-CCCCCCc
Confidence 0 00010 0112233333333368999999999653 2111113
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~ 214 (226)
.|...+.++.+.||.+|++++++||++.|+++..+ ..+.+.++|+||+++..+
T Consensus 335 ~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~A 391 (448)
T PRK05748 335 NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDA 391 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCC
Confidence 47788999999999999999999999999998543 457788999999975544
No 30
>PRK09165 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.1e-21 Score=178.05 Aligned_cols=160 Identities=21% Similarity=0.268 Sum_probs=117.1
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcccccc---------CCCCCeEEEEecccc---
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---------GGLGGKAIYIGKCLG--- 119 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---------~~~~~~vlyi~~e~~--- 119 (226)
...+++||++.||.++ ||+.+|++++|.|+||+|||+|+++++.+++....+ ...+.+|+||+.|+.
T Consensus 196 ~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~q 274 (497)
T PRK09165 196 HLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQ 274 (497)
T ss_pred CCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHH
Confidence 3568999999999999 689999999999999999999999999998732100 013678999998850
Q ss_pred --------------------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 120 --------------------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 120 --------------------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
. ..+.. .+...+.++..+ .++++||||+++.+
T Consensus 275 l~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli 353 (497)
T PRK09165 275 LATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhc
Confidence 0 00000 011122232223 47999999999954
Q ss_pred hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
-.........|.+++..+.+.||.+|++++|+||+++|+++..+. .+.+.++|+||++...
T Consensus 354 ~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd 418 (497)
T PRK09165 354 RGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQD 418 (497)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhcc
Confidence 322111123477789999999999999999999999999987653 5778899999996543
No 31
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.87 E-value=1.1e-21 Score=164.75 Aligned_cols=152 Identities=26% Similarity=0.386 Sum_probs=109.2
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---------------
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--------------- 119 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--------------- 119 (226)
.|+||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~-----~~~~~vly~SlEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAAL-----NGGYPVLYFSLEMSEEELAARLLARLSGV 74 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH-----TTSSEEEEEESSS-HHHHHHHHHHHHHTS
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHH-----hcCCeEEEEcCCCCHHHHHHHHHHHhhcc
Confidence 4899999999999 58999999999999999999999999999984 23589999998850
Q ss_pred ---------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHH
Q 036464 120 ---------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRT 164 (226)
Q Consensus 120 ---------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~ 164 (226)
...+.. .+...+..+..+..++++||||+++.+-... ....+.
T Consensus 75 ~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~--~~~~~~ 152 (259)
T PF03796_consen 75 PYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED--SSDNRR 152 (259)
T ss_dssp THHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC--SSSCCH
T ss_pred hhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC--CCCCHH
Confidence 000110 0112223333333589999999999654432 222356
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464 165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 165 ~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~ 214 (226)
..+..+++.|+++|++++++||++.|+++.... .+.+.+++.||.+...+
T Consensus 153 ~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~A 206 (259)
T PF03796_consen 153 QEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDA 206 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHH
Confidence 778899999999999999999999999986543 35566788888865443
No 32
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.87 E-value=2.3e-21 Score=162.73 Aligned_cols=126 Identities=24% Similarity=0.281 Sum_probs=96.6
Q ss_pred CceecCchhHHHhh--------------CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464 54 ARITTSCADLDNIL--------------GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG 119 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l--------------~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~ 119 (226)
..++||++.||++| +||+|+|++++|+|+||+|||+||+|++.+.+ ..+++|+||+.|..
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a------~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQA------SRGNPVLFVTVESP 75 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHH------hCCCcEEEEEecCC
Confidence 35899999999999 59999999999999999999999999999887 46889999998731
Q ss_pred Cc--hHH----------------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464 120 FY--TEQ----------------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALR 163 (226)
Q Consensus 120 ~~--~~~----------------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r 163 (226)
.. .++ ..++..+...+++. ++++|||||+++++... +
T Consensus 76 ~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~vVIDSls~l~~~~--~---- 148 (259)
T TIGR03878 76 ANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEY-KVKNTVIDSITGLYEAK--E---- 148 (259)
T ss_pred chHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhh-CCCEEEEcCchHhcccc--h----
Confidence 10 000 01122334444443 79999999999876431 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 164 TRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
...++++..|.+++++.++++++|+|..+
T Consensus 149 -~~~r~~~~~L~~~lk~~~~t~ll~~e~~~ 177 (259)
T TIGR03878 149 -MMAREIVRQLFNFMKKWYQTALFVSQKRS 177 (259)
T ss_pred -HHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 23456777888999999999999999765
No 33
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.87 E-value=2e-21 Score=174.29 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=115.7
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------ 119 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------ 119 (226)
...+++||++.||+++ ||+++|++++|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 174 ~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~-----~~g~~vl~~SlEm~~~~i~~R~~~~~ 247 (434)
T TIGR00665 174 GITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAI-----KEGKPVAFFSLEMSAEQLAMRMLSSE 247 (434)
T ss_pred CCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHH-----hCCCeEEEEeCcCCHHHHHHHHHHHh
Confidence 3578999999999999 59999999999999999999999999999873 34679999998850
Q ss_pred ------------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464 120 ------------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161 (226)
Q Consensus 120 ------------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~ 161 (226)
...++. .+...+.++..+. ++++||||+++.+-.... ..
T Consensus 248 ~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~-~~~~vvID~l~~i~~~~~--~~ 324 (434)
T TIGR00665 248 SRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREH-GLGLIVIDYLQLMSGSGR--SE 324 (434)
T ss_pred cCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCEEEEcchHhcCCCCC--CC
Confidence 001100 0112233333343 699999999996532211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~ 214 (226)
.|...+..+.+.|+++|++++|+||+++|+++..+ ..+.+.++++||.+...+
T Consensus 325 ~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~a 381 (434)
T TIGR00665 325 NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDA 381 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcC
Confidence 46677899999999999999999999999998654 345667888899865543
No 34
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.87 E-value=3.1e-21 Score=160.05 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=96.8
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH----------
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ---------- 124 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~---------- 124 (226)
+++||++.||++|+||+++|++++|+|+||+|||+|++|++...+ ..+.+|+|++.|. ..++
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~------~~ge~~lyvs~ee--~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL------QMGEPGIYVALEE--HPVQVRRNMAQFGW 73 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH------HcCCcEEEEEeeC--CHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999999999876 4689999999763 1100
Q ss_pred --------------------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHH
Q 036464 125 --------------------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRV 166 (226)
Q Consensus 125 --------------------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~ 166 (226)
......+.+.+++. ++++|||||++.++... . ..
T Consensus 74 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSls~l~~~~--~-----~~ 145 (237)
T TIGR03877 74 DVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDI-NAKRVVIDSVTTLYITK--P-----AM 145 (237)
T ss_pred CHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHh-CCCEEEEcChhHhhcCC--h-----HH
Confidence 12234444555544 68999999999876431 1 11
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 167 LSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 167 l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.++++..|+++++++|+|+++|+|.+.
T Consensus 146 ~r~~l~~l~~~lk~~~~t~llt~~~~~ 172 (237)
T TIGR03877 146 ARSIVMQLKRVLSGLGCTSIFVSQVSV 172 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECccc
Confidence 235678888889999999999999875
No 35
>PRK08006 replicative DNA helicase; Provisional
Probab=99.87 E-value=2.3e-21 Score=174.71 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=116.6
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||+++ ||+.+|+++.|.|.||.|||+|++++|.+++. ..+.+|+||+.|+.
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~-----~~g~~V~~fSlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM-----LQDKPVLIFSLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHHhc
Confidence 467999999999998 69999999999999999999999999999873 34779999998850
Q ss_pred -----------CchHHH---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464 120 -----------FYTEQS---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161 (226)
Q Consensus 120 -----------~~~~~~---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~ 161 (226)
...++. .....+.++..+.+++++||||+++-+-.... ..
T Consensus 278 ~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~--~~ 355 (471)
T PRK08006 278 RVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL--SD 355 (471)
T ss_pred CCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC--CC
Confidence 001110 01112223333344689999999995422211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
+|..++.++.+.||.+|++++|+||+..|+++..+. .+.+.++|+||+++..
T Consensus 356 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqd 411 (471)
T PRK08006 356 NRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQD 411 (471)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCccccc
Confidence 467789999999999999999999999999987653 4778899999996543
No 36
>PRK08760 replicative DNA helicase; Provisional
Probab=99.86 E-value=2.6e-21 Score=174.74 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=114.9
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+.+|+++.|.|+||+|||+|++++|.+++. ..+.+|+|++.|+.
T Consensus 209 ~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~-----~~g~~V~~fSlEMs~~ql~~Rl~a~~s 282 (476)
T PRK08760 209 ITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAI-----KSKKGVAVFSMEMSASQLAMRLISSNG 282 (476)
T ss_pred CCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHH-----hcCCceEEEeccCCHHHHHHHHHHhhC
Confidence 567999999999998 57999999999999999999999999999873 34678999998750
Q ss_pred ----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 ----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 ----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
. ..++. .+...+.++..+ .++++||||+++.+ .... ....
T Consensus 283 ~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~-~~~~lVvIDyLql~-~~~~-~~~~ 359 (476)
T PRK08760 283 RINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE-HDLGLIVIDYLQLM-SVPG-NSEN 359 (476)
T ss_pred CCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecHHhc-CCCC-CCcc
Confidence 0 00100 011122233233 47899999999954 3211 1134
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKA 212 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~ 212 (226)
|...+.++.+.||.+|++++|+||+++|+++..+ ..+.+.++|+||+++.
T Consensus 360 r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~Ieq 413 (476)
T PRK08760 360 RATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQ 413 (476)
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhc
Confidence 7788999999999999999999999999998764 3577889999999644
No 37
>PRK08506 replicative DNA helicase; Provisional
Probab=99.86 E-value=7.4e-21 Score=171.86 Aligned_cols=153 Identities=19% Similarity=0.283 Sum_probs=116.7
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+++|++++|.|+||+|||+|+++++.+++ ..+.+|+||+.|+.
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~------~~g~~V~~fSlEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKAL------NQDKGVAFFSLEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHH------hcCCcEEEEeCcCCHHHHHHHHHHHhc
Confidence 567999999999998 7999999999999999999999999999986 46789999998850
Q ss_pred ----------C-chHHHH----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 ----------F-YTEQSA----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 ----------~-~~~~~~----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
. ..+... .+..+ .++..+.+++++||||+++.+-... ....
T Consensus 245 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~--~~~~ 322 (472)
T PRK08506 245 SIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG--NFKD 322 (472)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC--CCCC
Confidence 0 000000 01222 3333333468999999999543221 1235
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~ 214 (226)
|...+..+.+.||.+|++++|+||++.|+++..+ ..+.+.++|+||++...+
T Consensus 323 r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdA 378 (472)
T PRK08506 323 RHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDA 378 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcC
Confidence 7788999999999999999999999999998764 357788999999965433
No 38
>PRK04328 hypothetical protein; Provisional
Probab=99.86 E-value=5.4e-21 Score=159.66 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=97.8
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cC
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GF 120 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~ 120 (226)
.+++||++.||++|+||+|+|++++|.|+||+|||+|++|++.+.+ ..+.+++||++|. .+
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~------~~ge~~lyis~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL------QMGEPGVYVALEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH------hcCCcEEEEEeeCCHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999999999999999876 4789999999762 00
Q ss_pred c---------------------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHH
Q 036464 121 Y---------------------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167 (226)
Q Consensus 121 ~---------------------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l 167 (226)
. .+....++.+.+.+++. +++++||||++.++..+ . ...
T Consensus 77 ~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSlt~l~~~~--~-----~~~ 148 (249)
T PRK04328 77 VRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDI-GAKRVVIDSVSTLYLTK--P-----AMA 148 (249)
T ss_pred HHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhh-CCCEEEEeChhHhhcCC--h-----HHH
Confidence 0 00112334455555554 78999999999876432 1 112
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 168 SGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 168 ~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++++..|.++++++|+|+++|+|+..
T Consensus 149 r~~~~~l~~~lk~~g~t~llt~e~~~ 174 (249)
T PRK04328 149 RSIVMQLKRVLSGLGCTAIFVSQVSV 174 (249)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECccc
Confidence 35677888888999999999999874
No 39
>PRK05595 replicative DNA helicase; Provisional
Probab=99.86 E-value=3.8e-21 Score=172.88 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=116.4
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 181 ~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~-----~~g~~vl~fSlEms~~~l~~R~~a~~~ 254 (444)
T PRK05595 181 TTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAAL-----REGKSVAIFSLEMSKEQLAYKLLCSEA 254 (444)
T ss_pred CCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHH-----HcCCcEEEEecCCCHHHHHHHHHHHhc
Confidence 468999999999998 69999999999999999999999999988653 35789999998850
Q ss_pred ----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 ----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 ----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
. ..+.. .....+.++..+ .++++||||+++.+ .... ....
T Consensus 255 ~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~-~~~~-~~~~ 331 (444)
T PRK05595 255 NVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLM-SGGK-GSES 331 (444)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhc-cCCC-CCcc
Confidence 0 00000 011122233223 47999999999954 3221 2235
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA 214 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~ 214 (226)
|...+.++.+.||.+|++++|+||+++|+++..+. .+.+.++|+||+++..+
T Consensus 332 r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~A 387 (444)
T PRK05595 332 RQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDA 387 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCC
Confidence 77889999999999999999999999999987653 47788999999965443
No 40
>PRK07004 replicative DNA helicase; Provisional
Probab=99.86 E-value=6.4e-21 Score=171.68 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=116.3
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||+++ ||+++|+++.|+|.||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 193 ~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~-----~~~~~v~~fSlEM~~~ql~~R~la~~~ 266 (460)
T PRK07004 193 VTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV-----EYGLPVAVFSMEMPGTQLAMRMLGSVG 266 (460)
T ss_pred CCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHH-----HcCCeEEEEeCCCCHHHHHHHHHHhhc
Confidence 468999999999999 59999999999999999999999999998874 35789999998850
Q ss_pred -----------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 -----------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 -----------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
...+.. .+...+.++..+.+++++||||+++.+-... ....
T Consensus 267 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~~~~ 344 (460)
T PRK07004 267 RLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--QGEN 344 (460)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--CCCc
Confidence 000100 0112222333333468999999999553221 1235
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKA 212 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~ 212 (226)
|.+.+.++.+.||.+|++++|+||+.+|+++..+ ..+.+.++|+||+++.
T Consensus 345 r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~Ieq 398 (460)
T PRK07004 345 RATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQ 398 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhh
Confidence 7888999999999999999999999999998664 4577889999999543
No 41
>PRK06321 replicative DNA helicase; Provisional
Probab=99.85 E-value=5.1e-21 Score=172.43 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=116.4
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||++++ |+++|+++.|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 206 ~~Gi~tG~~~LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~-----~~g~~v~~fSLEMs~~ql~~Rlla~~s 279 (472)
T PRK06321 206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCF-----QNRLPVGIFSLEMTVDQLIHRIICSRS 279 (472)
T ss_pred CCccccCcHHHHHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHhhc
Confidence 4689999999999995 9999999999999999999999999999863 34689999998750
Q ss_pred -----------CchHHHH----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcC-cCChH
Q 036464 120 -----------FYTEQSA----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHG-FVDLA 161 (226)
Q Consensus 120 -----------~~~~~~~----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~-~~~~~ 161 (226)
...+... .++.+ .++..+ .++++||||+++.+-... .....
T Consensus 280 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~~~ 358 (472)
T PRK06321 280 EVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLSGSGNLRNSE 358 (472)
T ss_pred CCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcCCCCccCCcc
Confidence 0011100 01122 232223 468999999999543211 11224
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
.|..++.++.+.||.+|++++|+||++.|+++..+. .+.+.++|+||+++..
T Consensus 359 ~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqd 414 (472)
T PRK06321 359 SRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQD 414 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhccccccc
Confidence 577889999999999999999999999999987653 5777889999996543
No 42
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.85 E-value=6.8e-21 Score=160.66 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=111.8
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+++|++++|+|+||+|||+|+.+++.+++. ..+.+|+||+.|..
T Consensus 10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~-----~~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLIT-----QHGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----hcCceEEEEEcccCHHHHHHHHHHHHh
Confidence 358999999999999 79999999999999999999999999999873 23889999998740
Q ss_pred --Cch-----------------HHH------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 --FYT-----------------EQS------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 --~~~-----------------~~~------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
... +.+ .+...+.++..+ .++++||||+++.+..... ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~l~~~~~-~~~~ 161 (271)
T cd01122 84 GKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVS-HGIQHIIIDNLSIMVSDER-ASGD 161 (271)
T ss_pred CCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhc-CCceEEEECCHHHHhccCC-Cchh
Confidence 000 000 111223333333 3799999999998764321 1223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC-------CCCcCCcCCCCchhHHHHHhh
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA-------ESCLTCLRDSGSRKAVAAAAA 218 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~-------~~~~~~~~~sg~~~~~~~~~~ 218 (226)
+...+.+++..|+++|++++++|++++|+++.... .+.+.+++.|+. ....||.
T Consensus 162 ~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~--i~~~aD~ 222 (271)
T cd01122 162 ERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAA--IGQLADN 222 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHh--HhhhccE
Confidence 45567889999999999999999999999985533 233444544554 4455553
No 43
>PRK08840 replicative DNA helicase; Provisional
Probab=99.85 E-value=1.1e-20 Score=169.93 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=115.9
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+.+|+++.|.|.||+|||+|++++|.+++. ..+.+|+||+.|+.
T Consensus 197 ~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~-----~~~~~v~~fSlEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 197 VTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAM-----DQDKPVLIFSLEMPAEQLMMRMLASLS 270 (464)
T ss_pred CCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHH-----hCCCeEEEEeccCCHHHHHHHHHHhhC
Confidence 468999999999999 68999999999999999999999999999873 34789999998850
Q ss_pred ----------C-chHHHH-----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464 120 ----------F-YTEQSA-----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161 (226)
Q Consensus 120 ----------~-~~~~~~-----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~ 161 (226)
. ..+... .+..+ .++..+.+++++||||+++-+ +.... ..
T Consensus 271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~-~~~~~-~~ 348 (464)
T PRK08840 271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLM-RVPAL-SD 348 (464)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhc-CCCCC-CC
Confidence 0 000000 01122 222233335899999999954 32111 13
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
.|.+++.++.+.||.+|++++|+||+..|+++..+. .+.+.++|+||+++..
T Consensus 349 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqd 404 (464)
T PRK08840 349 NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQD 404 (464)
T ss_pred chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhccccccc
Confidence 477889999999999999999999999999987654 4678899999996543
No 44
>PRK06904 replicative DNA helicase; Validated
Probab=99.84 E-value=2.3e-20 Score=168.39 Aligned_cols=154 Identities=20% Similarity=0.285 Sum_probs=116.6
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------- 118 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------- 118 (226)
....++||++.||+++ ||+.+|+++.|.|.||+|||+|++++|.+++. ..+.+|+||+.|+
T Consensus 200 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~-----~~g~~Vl~fSlEMs~~ql~~Rlla~~ 273 (472)
T PRK06904 200 GVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM-----ASEKPVLVFSLEMPAEQIMMRMLASL 273 (472)
T ss_pred CCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHhh
Confidence 3568999999999998 69999999999999999999999999999873 2477999999885
Q ss_pred ----------c-Cc-hHHHH-------H----------------HHHH----HHHHhhCCCceEEEEcCCchhhhcCcCC
Q 036464 119 ----------G-FY-TEQSA-------V----------------INYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVD 159 (226)
Q Consensus 119 ----------~-~~-~~~~~-------~----------------l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~ 159 (226)
. .. .+... . +..+ .++..+.+++++||||+++-+-....
T Consensus 274 s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~-- 351 (472)
T PRK06904 274 SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF-- 351 (472)
T ss_pred CCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC--
Confidence 0 11 01000 0 1122 23333334689999999995432221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 160 ~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
...|..++.++.+.||.+|++++|+||+..|+++..+. .+.+.++|+||+++..
T Consensus 352 ~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqd 409 (472)
T PRK06904 352 EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQD 409 (472)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccC
Confidence 13577889999999999999999999999999986643 4677889999997543
No 45
>PRK05636 replicative DNA helicase; Provisional
Probab=99.84 E-value=2e-20 Score=169.75 Aligned_cols=153 Identities=19% Similarity=0.302 Sum_probs=115.7
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 245 ~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~-----~~g~~v~~fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 245 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASI-----KHNKASVIFSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCeEEEEEeeCCHHHHHHHHHHHhc
Confidence 467999999999988 68999999999999999999999999998864 34679999998750
Q ss_pred -----------CchHHHH----------------------HHHHHHHHH---hhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464 120 -----------FYTEQSA----------------------VINYLDKFV---SEHKDVKVVIIDSIAFHFRHGFVDLALR 163 (226)
Q Consensus 120 -----------~~~~~~~----------------------~l~~l~~~l---~~~~~~~lvVIDsl~~l~~~~~~~~~~r 163 (226)
...+... .+..+...+ +...++++||||+++.+- .. .....|
T Consensus 319 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~-~~-~~~~~r 396 (505)
T PRK05636 319 EVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMS-SG-KRVESR 396 (505)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC-CC-CCCCcH
Confidence 0011100 012222222 122479999999999553 21 112347
Q ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 164 TRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
.+.+.++.+.||.+|++++|+||++.|+++..+. .+.+.++|+||+++..
T Consensus 397 ~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqd 450 (505)
T PRK05636 397 QQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQD 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhccccccc
Confidence 7889999999999999999999999999987654 4777889999996543
No 46
>PRK06749 replicative DNA helicase; Provisional
Probab=99.84 E-value=4.3e-20 Score=164.86 Aligned_cols=154 Identities=17% Similarity=0.244 Sum_probs=115.3
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------- 118 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------- 118 (226)
....++||++.||+++ ||+.+|+++.|.|.||.|||+|+++++.+++ ..+.+|+|++.|+
T Consensus 165 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a------~~g~~v~~fSlEMs~~ql~~R~ls~~ 237 (428)
T PRK06749 165 EITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAA------KSGAAVGLFSLEMSSKQLLKRMASCV 237 (428)
T ss_pred CCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHH------hcCCCEEEEEeeCCHHHHHHHHHHhc
Confidence 3567999999999998 5899999999999999999999999999997 3578999999875
Q ss_pred --------cC----c-hHHHHH----------------------HHHHHH----HHhhCCC-ceEEEEcCCchhhhcCcC
Q 036464 119 --------GF----Y-TEQSAV----------------------INYLDK----FVSEHKD-VKVVIIDSIAFHFRHGFV 158 (226)
Q Consensus 119 --------~~----~-~~~~~~----------------------l~~l~~----~l~~~~~-~~lvVIDsl~~l~~~~~~ 158 (226)
.+ . .++... +.++.. +..+.+. ..+||||+++.+- ....
T Consensus 238 ~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~-~~~~ 316 (428)
T PRK06749 238 GEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLIT-GDPK 316 (428)
T ss_pred cCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcC-CCCC
Confidence 00 0 111000 122332 2223322 5599999999543 2111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 159 DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 159 ~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
....|...+.++.+.||.+|++++|+||+++|+++..+. .|.+.++|+||+++..
T Consensus 317 ~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqd 375 (428)
T PRK06749 317 HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQD 375 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhccccccc
Confidence 113477889999999999999999999999999987653 5668899999997554
No 47
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.83 E-value=1.8e-20 Score=154.25 Aligned_cols=125 Identities=26% Similarity=0.332 Sum_probs=94.4
Q ss_pred eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccc-------------cC-
Q 036464 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCL-------------GF- 120 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~-------------~~- 120 (226)
++||++.||++|+||+|+|++++|.|+||+|||+|++|++.+.+ .. +.+|+||+++. ++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~------~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~ 74 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL------KNFGEKVLYVSFEEPPEELIENMKSFGWDL 74 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HHHT--EEEEESSS-HHHHHHHHHTTTS-H
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh------hhcCCcEEEEEecCCHHHHHHHHHHcCCcH
Confidence 68999999999999999999999999999999999999999887 46 89999999763 00
Q ss_pred --------------c--------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464 121 --------------Y--------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 121 --------------~--------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la 178 (226)
+ .+...+...+.+.+++. +++++||||++.+... .+ ...+..++..|.+..
T Consensus 75 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~--~~----~~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 75 EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLY--DD----PEELRRFLRALIKFL 147 (226)
T ss_dssp HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTS--SS----GGGHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhc--CC----HHHHHHHHHHHHHHH
Confidence 0 01123456667777765 6799999999988221 12 122446778888888
Q ss_pred HHcCCEEEEeccccc
Q 036464 179 KKFSLALLEPNLATT 193 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~ 193 (226)
++.++++++|.|...
T Consensus 148 ~~~~~t~llt~~~~~ 162 (226)
T PF06745_consen 148 KSRGVTTLLTSEMPS 162 (226)
T ss_dssp HHTTEEEEEEEEESS
T ss_pred HHCCCEEEEEEcccc
Confidence 999999999999754
No 48
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.83 E-value=1.6e-20 Score=155.82 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=103.2
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------------------- 119 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------------------- 119 (226)
+||.+++ |+++|++++|+|+||+|||+|+++++.+.+. ..+.+|+|++.|..
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~-----~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~ 75 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAK-----KQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRT 75 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 6899995 9999999999999999999999999999884 23889999998740
Q ss_pred --CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464 120 --FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171 (226)
Q Consensus 120 --~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~ 171 (226)
...+.. .+.+.+.++..+. ++++||||+++.+.... ....+...+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~-~~~~vvID~l~~l~~~~--~~~~~~~~~~~~~ 152 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEH-GLGLIVIDYLQLMSGSK--KKGNRQQEVAEIS 152 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhc-CCCEEEEcCchhcCCCC--CCCCHHHHHHHHH
Confidence 000000 0122233333333 89999999999654332 1223556788999
Q ss_pred HHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 172 LKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 172 ~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
+.|+++|+++|+++|+++|+++...+ .+.+.+++.||.....
T Consensus 153 ~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~ 198 (242)
T cd00984 153 RSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQD 198 (242)
T ss_pred HHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccC
Confidence 99999999999999999999975432 3344556666665443
No 49
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.82 E-value=2.2e-19 Score=148.55 Aligned_cols=127 Identities=23% Similarity=0.268 Sum_probs=94.4
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------- 118 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------- 118 (226)
...+++||++.||++|+||+|+|++++|+|+||+|||+|+++++...+ ..+++|+|++.|.
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~------~~g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL------KQGKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH------hCCCEEEEEEcCCCHHHHHHHHHHCC
Confidence 356899999999999999999999999999999999999999998876 4689999999763
Q ss_pred cCchH-----------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464 119 GFYTE-----------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM 175 (226)
Q Consensus 119 ~~~~~-----------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~ 175 (226)
.+..+ .-..++.+.+.+++ .+++++||||++++.... + ...+.+++..++
T Consensus 77 ~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~-~~~~~iviDs~t~~~~~~--~----~~~~~~~l~~l~ 149 (234)
T PRK06067 77 IDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKS-KREDVIIIDSLTIFATYA--E----EDDILNFLTEAK 149 (234)
T ss_pred CChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHh-cCCCEEEEecHHHHHhcC--C----HHHHHHHHHHHH
Confidence 00000 01234455555555 378999999999764321 1 123556666776
Q ss_pred HHHHHcCCEEEEecccc
Q 036464 176 NLAKKFSLALLEPNLAT 192 (226)
Q Consensus 176 ~la~~~~~~vi~~nq~~ 192 (226)
.+++ .+++++++.|..
T Consensus 150 ~l~~-~g~tvllt~~~~ 165 (234)
T PRK06067 150 NLVD-LGKTILITLHPY 165 (234)
T ss_pred HHHh-CCCEEEEEecCC
Confidence 6654 588888888754
No 50
>PRK07773 replicative DNA helicase; Validated
Probab=99.82 E-value=1.1e-19 Score=175.12 Aligned_cols=150 Identities=18% Similarity=0.271 Sum_probs=116.5
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
...++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++. ..+.+|+||+.|+.
T Consensus 197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~-----~~~~~V~~fSlEms~~ql~~R~~s~~~ 270 (886)
T PRK07773 197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAI-----RHRLAVAIFSLEMSKEQLVMRLLSAEA 270 (886)
T ss_pred CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCCCHHHHHHHHHHHhc
Confidence 568999999999999 89999999999999999999999999999874 34689999998850
Q ss_pred -----------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 120 -----------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 120 -----------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
...++. .+...+.++.++ .++++||||+++.+- .. ....+
T Consensus 271 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~-~~~~lvvIDyLql~~-~~-~~~~~ 347 (886)
T PRK07773 271 KIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQE-ANLGLIVVDYLQLMT-SG-KKYEN 347 (886)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchhhcC-CC-CCCCC
Confidence 000010 011122233333 379999999999543 22 12235
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchh
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRK 211 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~ 211 (226)
|.+.+.++.+.||.+|++++|+||+++|+++..+ ..+.+.++|+||...
T Consensus 348 r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~ 400 (886)
T PRK07773 348 RQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLT 400 (886)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCccc
Confidence 7788999999999999999999999999998764 457788999999865
No 51
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.82 E-value=2e-19 Score=163.22 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=102.2
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------ 125 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------ 125 (226)
...+++||+++||++|+||+++|++++|.||||+|||+|++|++.+.+ ..+.+|+|++.|. ..+++
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~------~~ge~~~y~s~eE--s~~~i~~~~~~ 312 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC------ANKERAILFAYEE--SRAQLLRNAYS 312 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeC--CHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999987 5788999999872 22221
Q ss_pred ---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464 126 ---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 126 ---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la 178 (226)
..++.+.+.+++. ++++|||||++.+... ... .+..+++..|.+++
T Consensus 313 lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~-~~~~vvIDsi~~~~~~-~~~-----~~~r~~~~~l~~~l 385 (484)
T TIGR02655 313 WGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADF-KPARIAIDSLSALARG-VSN-----NAFRQFVIGVTGYA 385 (484)
T ss_pred cCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHc-CCCEEEEcCHHHHHHh-cCH-----HHHHHHHHHHHHHH
Confidence 2344555555554 7899999999987653 321 22356777888999
Q ss_pred HHcCCEEEEecccccc
Q 036464 179 KKFSLALLEPNLATTA 194 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~~ 194 (226)
++.|+++++|+.....
T Consensus 386 k~~~it~~~t~~~~~~ 401 (484)
T TIGR02655 386 KQEEITGFFTNTSDQF 401 (484)
T ss_pred hhCCCeEEEeeccccc
Confidence 9999999999887653
No 52
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.81 E-value=3.8e-19 Score=146.54 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=93.6
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------Cc
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------FY 121 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~~ 121 (226)
+++||++.||++++||+++|+++.|.|+||+|||+|+++++.+.+ ..+.+|+|++.|.. ++
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~------~~g~~~~~is~e~~~~~i~~~~~~~g~~~ 74 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL------RDGDPVIYVTTEESRESIIRQAAQFGMDF 74 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH------hcCCeEEEEEccCCHHHHHHHHHHhCCCH
Confidence 479999999999999999999999999999999999999998876 35789999997630 00
Q ss_pred hH---------------------------HHHHHHHHHHHHhhCC-CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHH
Q 036464 122 TE---------------------------QSAVINYLDKFVSEHK-DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALK 173 (226)
Q Consensus 122 ~~---------------------------~~~~l~~l~~~l~~~~-~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~ 173 (226)
.+ .-+....+.+.+++.. +++++||||++.++.. +.. ..++++..
T Consensus 75 ~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~---~~~----~~r~~~~~ 147 (229)
T TIGR03881 75 EKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD---KPA----MARKYSYY 147 (229)
T ss_pred HHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc---ChH----HHHHHHHH
Confidence 00 0012233444444432 5789999999987542 111 12466778
Q ss_pred HHHHHHHcCCEEEEecccc
Q 036464 174 LMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 174 L~~la~~~~~~vi~~nq~~ 192 (226)
|+++++++|+++++|+|..
T Consensus 148 l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 148 LKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred HHHHHHhCCCEEEEEeccc
Confidence 9999999999999999964
No 53
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=3e-19 Score=157.52 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=120.6
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------- 118 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------- 118 (226)
...++||+..||+++. |+.+|+++.+.|.||.|||+||+++|.+++. ..+.+|++|+.|+
T Consensus 176 ~~Gi~tgf~~LD~~t~-G~~~~dLii~AaRP~mGKTafalnia~n~a~-----~~~~~v~iFSLEM~~eql~~R~Ls~~s 249 (435)
T COG0305 176 LIGVPTGFTDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAA-----DGRKPVAIFSLEMSEEQLVMRLLSSES 249 (435)
T ss_pred CcccccCchhhHHHhc-CCccCCEEEEccCCCCChHHHHHHHHHHHHH-----hcCCCeEEEEccCCHHHHHHHhhcccc
Confidence 5889999999999995 5999999999999999999999999999985 4567799999875
Q ss_pred ----------cCchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464 119 ----------GFYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL 162 (226)
Q Consensus 119 ----------~~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~ 162 (226)
....+.. ++...+.++-.++ ++++++||+++-+.... . ...
T Consensus 250 ~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~-~l~~i~iDYLqLm~~~~-~-~~~ 326 (435)
T COG0305 250 GIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKH-NLGLIVIDYLQLMTGGK-K-SEN 326 (435)
T ss_pred ccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhc-CccEEEEEEEEeecccc-c-chh
Confidence 0001100 1112333333444 69999999999544332 1 256
Q ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464 163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA 212 (226)
Q Consensus 163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~ 212 (226)
|.+.+.++.+.|+.+|++.+++||..+|+++.++. .|.+.++|.||+++.
T Consensus 327 r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQ 380 (435)
T COG0305 327 RKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQ 380 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhh
Confidence 89999999999999999999999999999998876 588999999999876
No 54
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.81 E-value=1.4e-19 Score=145.07 Aligned_cols=138 Identities=24% Similarity=0.318 Sum_probs=84.7
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEecccc---------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLG--------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~--------- 119 (226)
...++++.+.+|.++.|++++|++++|+|+||+|||+++++++..++...++-+ .+.+|+||+.|..
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 455889999999999999999999999999999999999999999985443322 5789999998840
Q ss_pred ----Cc--hHHH------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHH
Q 036464 120 ----FY--TEQS------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG 169 (226)
Q Consensus 120 ----~~--~~~~------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~ 169 (226)
.. .+.. ..++.+.+.+.+.+++++||||+++.+...+.. ....+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~----~~~~~~~ 166 (193)
T PF13481_consen 91 ALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDEN----SNSAVAQ 166 (193)
T ss_dssp HHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-----HHHHHH
T ss_pred HHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCC----CHHHHHH
Confidence 00 0000 123445566666457999999999988865221 2233478
Q ss_pred HHHHHHHHHHHcCCEEEEecccccc
Q 036464 170 IALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 170 ~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++.|+++|+++|++|++++|++|.
T Consensus 167 ~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 167 LMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp HHHHHHHHHHHH--EEEEEEEE---
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCC
Confidence 9999999999999999999999975
No 55
>PRK05973 replicative DNA helicase; Provisional
Probab=99.80 E-value=3.8e-19 Score=146.62 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=94.6
Q ss_pred HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----------------
Q 036464 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS----------------- 125 (226)
Q Consensus 63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~----------------- 125 (226)
.|++. ||+++|++++|.|+||+|||+|++|++.+.+ ..+.+|+||+.|. ..+++
T Consensus 54 ~~~l~-GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a------~~Ge~vlyfSlEe--s~~~i~~R~~s~g~d~~~~~~~ 124 (237)
T PRK05973 54 AEELF-SQLKPGDLVLLGARPGHGKTLLGLELAVEAM------KSGRTGVFFTLEY--TEQDVRDRLRALGADRAQFADL 124 (237)
T ss_pred HHHhc-CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEEEEeC--CHHHHHHHHHHcCCChHHhccc
Confidence 67755 7999999999999999999999999999987 4688999999874 11110
Q ss_pred ---------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 126 ---------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 126 ---------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
..-..+.++..+ .++++|||||++.+... . +...+..++..|+.+++++|++||+++|+++.++
T Consensus 125 ~~~d~~d~~~~~~ii~~l~~~-~~~~lVVIDsLq~l~~~-~-----~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e 197 (237)
T PRK05973 125 FEFDTSDAICADYIIARLASA-PRGTLVVIDYLQLLDQR-R-----EKPDLSVQVRALKSFARERGLIIVFISQIDRSFD 197 (237)
T ss_pred eEeecCCCCCHHHHHHHHHHh-hCCCEEEEEcHHHHhhc-c-----cchhHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 011123333333 36899999999965321 1 1123566778899999999999999999999887
Q ss_pred CC----CCcCCcCC
Q 036464 197 AE----SCLTCLRD 206 (226)
Q Consensus 197 ~~----~~~~~~~~ 206 (226)
+. +.+.++|.
T Consensus 198 ~~~~~~P~laDlR~ 211 (237)
T PRK05973 198 PSAKPLPDIRDVRL 211 (237)
T ss_pred cCCCCCCChhhcCC
Confidence 64 55555554
No 56
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.79 E-value=1.4e-18 Score=158.90 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=101.9
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------- 124 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~------- 124 (226)
+..+++||++.||.+|+||+++|++++|.|+||+|||+|+++++.+.+ ..+.+|+||+.|. ..++
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~------~~g~~~~yis~e~--~~~~i~~~~~~ 322 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC------RRGERCLLFAFEE--SRAQLIRNARS 322 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH------hCCCcEEEEEecC--CHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999887 5789999999763 1111
Q ss_pred --------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464 125 --------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 125 --------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la 178 (226)
-..+..+.+.+++. ++++|||||++.++... + ...+.+.+..|.+++
T Consensus 323 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDslt~l~~~~--~----~~~~~~~l~~l~~~~ 395 (509)
T PRK09302 323 WGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEF-KPSRVAIDPLSALARGG--S----LNEFRQFVIRLTDYL 395 (509)
T ss_pred cCCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHc-CCCEEEEcCHHHHHHhC--C----HHHHHHHHHHHHHHH
Confidence 01234455555554 78999999999876532 2 123467778888999
Q ss_pred HHcCCEEEEecccccc
Q 036464 179 KKFSLALLEPNLATTA 194 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~~ 194 (226)
+++|+++|+|+|+...
T Consensus 396 k~~~~t~l~t~~~~~~ 411 (509)
T PRK09302 396 KSEEITGLFTNLTPDF 411 (509)
T ss_pred HhCCCeEEEEeccccc
Confidence 9999999999998653
No 57
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.78 E-value=2.3e-18 Score=157.50 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=98.3
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------ 118 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------ 118 (226)
....+++||++.||++|+||+|+|++++|+|+||+|||+|++|++.+.+. ..+.+|+||+.|.
T Consensus 8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~-----~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK-----RFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCEEEEEccCCHHHHHHHHHHc
Confidence 35679999999999999999999999999999999999999999988873 2278999999873
Q ss_pred -cCch--------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464 119 -GFYT--------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171 (226)
Q Consensus 119 -~~~~--------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~ 171 (226)
++.. +.-..+..+.+.+++. +++.+||||+++++.. ... ...+.+.+
T Consensus 83 g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~vVIDSls~l~~~-~d~----~~~~r~~l 156 (509)
T PRK09302 83 GWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKI-GAKRVVLDSIEALFSG-FSN----EAVVRREL 156 (509)
T ss_pred CCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhh-CCCEEEECCHHHHHhh-ccC----HHHHHHHH
Confidence 0000 0012344556666654 7899999999986542 122 12233455
Q ss_pred HHHHHHHHHcCCEEEEeccccc
Q 036464 172 LKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 172 ~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..|.+.+++.|+++++|.|...
T Consensus 157 ~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 157 RRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHhCCCEEEEEECCcc
Confidence 5666667789999999998764
No 58
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.77 E-value=6.3e-18 Score=138.89 Aligned_cols=123 Identities=25% Similarity=0.231 Sum_probs=87.2
Q ss_pred CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cCch---
Q 036464 59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GFYT--- 122 (226)
Q Consensus 59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~~~--- 122 (226)
|++.||++++||+|+|++++|.|+||+|||+||++++.+.+ ..+++|+|++.|. .+..
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~------~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~ 74 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL------KNGEKAMYISLEEREERILGYAKSKGWDLEDYI 74 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCCCHHHHHHHHHHcCCChHHHH
Confidence 78999999999999999999999999999999999999887 4689999999873 0000
Q ss_pred -----------HHH-----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 123 -----------EQS-----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 123 -----------~~~-----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
... .....+..++++. +++++||||++.+. ........+...+.++++. .++.|++++
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~vVIDsls~l~-~~~~~~~~~r~~l~~l~~~----lk~~~~tvl 148 (224)
T TIGR03880 75 DKSLYIVRLDPSDFKTSLNRIKNELPILIKEL-GASRVVIDPISLLE-TLFDDDAERRTELFRFYSS----LRETGVTTI 148 (224)
T ss_pred hCCeEEEecCHHHHHhhHHHHHHHHHHHHHHh-CCCEEEEcChHHHh-hhcCCHHHHHHHHHHHHHH----HHhCCCEEE
Confidence 000 1223344455554 68999999999762 2222323333333333333 357899999
Q ss_pred Eeccccc
Q 036464 187 EPNLATT 193 (226)
Q Consensus 187 ~~nq~~~ 193 (226)
++.|...
T Consensus 149 l~s~~~~ 155 (224)
T TIGR03880 149 LTSEADK 155 (224)
T ss_pred EEEcccC
Confidence 9999764
No 59
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.74 E-value=3.9e-17 Score=137.18 Aligned_cols=129 Identities=27% Similarity=0.333 Sum_probs=98.6
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------c
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------G 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~ 119 (226)
..+++||++.||++++||+|+|++++|+|+||+|||+|++|++.+.+ ..+.+|+||+.+. .
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~------~~ge~vlyvs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA------REGEPVLYVSTEESPEELLENARSFGW 75 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH------hcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 36799999999999999999999999999999999999999999998 5689999999652 0
Q ss_pred C-------------------c----------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHH
Q 036464 120 F-------------------Y----------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGI 170 (226)
Q Consensus 120 ~-------------------~----------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~ 170 (226)
+ . ...-.+.+.+.+..... +...+||||++.+.... .+ ......+
T Consensus 76 d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~-~~~~~ViDsi~~~~~~~-~~----~~~~r~~ 149 (260)
T COG0467 76 DLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE-GADRVVIDSITELTLYL-ND----PALVRRI 149 (260)
T ss_pred CHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHh-CCCEEEEeCCchHhhhc-Cc----hHHHHHH
Confidence 0 0 01112345566666665 58999999999544221 11 1122577
Q ss_pred HHHHHHHHHHcCCEEEEeccccc
Q 036464 171 ALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 171 ~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+..+.++.++.+++.+++.+...
T Consensus 150 ~~~l~~~~~~~~~t~~~~~~~~~ 172 (260)
T COG0467 150 LLLLKRFLKKLGVTSLLTTEAPV 172 (260)
T ss_pred HHHHHHHHHhCCCEEEEEecccc
Confidence 88899999999999999887643
No 60
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.73 E-value=2.7e-17 Score=149.42 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=89.7
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cCc
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GFY 121 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~~ 121 (226)
+++||++.||++|+||+|+|++++|.|+||+|||+||+|++.+.+. ..+++++||+.|. ++.
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-----~~ge~~lyvs~eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-----HFDEPGVFVTFEESPQDIIKNARSFGWDL 76 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-----hCCCCEEEEEEecCHHHHHHHHHHcCCCH
Confidence 6899999999999999999999999999999999999999988652 2378999999762 000
Q ss_pred hH--------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464 122 TE--------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM 175 (226)
Q Consensus 122 ~~--------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~ 175 (226)
.+ .-..++.+...++.. +++.|+|||+.+++.. .+......+ .+.. +.
T Consensus 77 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g-~~qRVvIDSl~aL~~~-~~~~~~~r~---~l~~-Li 150 (484)
T TIGR02655 77 QKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKY-KAKRVSIDSVTAVFQQ-YDAVSVVRR---EIFR-LV 150 (484)
T ss_pred HHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHh-CCcEEEEeehhHhhhh-cCchHHHHH---HHHH-HH
Confidence 00 011233444455543 7899999999976532 122111111 2222 33
Q ss_pred HHHHHcCCEEEEecccccc
Q 036464 176 NLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 176 ~la~~~~~~vi~~nq~~~~ 194 (226)
+..++.++|+++|.|....
T Consensus 151 ~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 151 ARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHCCCEEEEEecCccc
Confidence 3335689999999987653
No 61
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=8.6e-16 Score=122.70 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=96.6
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCch---------
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFYT--------- 122 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~~--------- 122 (226)
..+++|-++||+-|+||+|-|+++.|-|+.|+|||.|+++++.-.+ ..+.++.|+++|. ..+.
T Consensus 8 ~ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L------~~g~~v~yvsTe~T~refi~qm~sl~yd 81 (235)
T COG2874 8 KIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL------MNGYRVTYVSTELTVREFIKQMESLSYD 81 (235)
T ss_pred hhccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH------hCCceEEEEEechhHHHHHHHHHhcCCC
Confidence 3599999999999999999999999999999999999999999988 6889999999884 1111
Q ss_pred -------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHH
Q 036464 123 -------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNL 177 (226)
Q Consensus 123 -------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~l 177 (226)
..-.+++.+-+.++.. +-+++||||++.+...+ ....+.+++..++++
T Consensus 82 v~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~-~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l 154 (235)
T COG2874 82 VSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRW-EKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKL 154 (235)
T ss_pred chHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhh-cCCEEEEecccHHhhcc------cHHHHHHHHHHHHHH
Confidence 1113455555555543 67999999999766443 234577899999999
Q ss_pred HHHcCCEEEEecccc
Q 036464 178 AKKFSLALLEPNLAT 192 (226)
Q Consensus 178 a~~~~~~vi~~nq~~ 192 (226)
+. .|-+||+|-|..
T Consensus 155 ~d-~gKvIilTvhp~ 168 (235)
T COG2874 155 SD-LGKVIILTVHPS 168 (235)
T ss_pred Hh-CCCEEEEEeChh
Confidence 96 566666665554
No 62
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.67 E-value=7.9e-16 Score=127.08 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=88.6
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------- 124 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-------- 124 (226)
...|.++++.||+.++||+++|+++.|.|+||+|||+|+++++...+ ..+.+++|++++. ..++
T Consensus 3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~------~~g~~~~yi~~e~--~~~~~~~~~~~~ 74 (230)
T PRK08533 3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFL------QNGYSVSYVSTQL--TTTEFIKQMMSL 74 (230)
T ss_pred eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEEeCCC--CHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999876 4678999999763 1111
Q ss_pred ----------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHH
Q 036464 125 ----------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMN 176 (226)
Q Consensus 125 ----------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~ 176 (226)
...+..+...... .+++++||||+++.+....+. ....++.+.+++
T Consensus 75 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~~~lVIDe~t~~l~~~~d~-----~~~~~l~~~l~~ 148 (230)
T PRK08533 75 GYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRF-YEKDVIIIDSLSSLISNDASE-----VAVNDLMAFFKR 148 (230)
T ss_pred CCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHh-cCCCEEEEECccHHhcCCcch-----HHHHHHHHHHHH
Confidence 0111112222222 268999999999876432111 122355666666
Q ss_pred HHHHcCCEEEEeccccc
Q 036464 177 LAKKFSLALLEPNLATT 193 (226)
Q Consensus 177 la~~~~~~vi~~nq~~~ 193 (226)
+++ .|++++++++...
T Consensus 149 l~~-~g~tvi~t~~~~~ 164 (230)
T PRK08533 149 ISS-LNKVIILTANPKE 164 (230)
T ss_pred HHh-CCCEEEEEecccc
Confidence 654 4778888877653
No 63
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.65 E-value=2.7e-15 Score=124.54 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=98.1
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCC------CCCeEEEEeccccCchHHH----------------------
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG------LGGKAIYIGKCLGFYTEQS---------------------- 125 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~------~~~~vlyi~~e~~~~~~~~---------------------- 125 (226)
|.+..|+|+||+|||+|++++|..++.+.++.+ .+++|+|++.|. ..+++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed--~~~~i~~Rl~~i~~~~~~~~~~~rl~~ 78 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED--PREEIHRRLEAILQHLEPDDAGDRLFI 78 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC--CHHHHHHHHHHHHhhcCCcCcccceEE
Confidence 678999999999999999999999998776654 568999999884 11000
Q ss_pred -------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 126 -------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 126 -------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
..++.+.+.+.. .++++||||+++.+......+ ......++..|+++++++|++|+
T Consensus 79 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~lvviDpl~~~~~~~~~d----~~~~~~~~~~L~~~a~~~g~avl 153 (239)
T cd01125 79 DSGRIQPISIAREGRIIVVPEFERIIEQLLI-RRIDLVVIDPLVSFHGVSEND----NGAMDAVIKALRRIAAQTGAAIL 153 (239)
T ss_pred eccCCCceecccCCcccccHHHHHHHHHHHh-cCCCEEEECChHHhCCCCcCC----HHHHHHHHHHHHHHHHHhCCEEE
Confidence 011222222222 479999999998763221112 23455788899999999999999
Q ss_pred EeccccccCCCCCCcCCcCCCCchhHHHHHhhhh
Q 036464 187 EPNLATTANLAESCLTCLRDSGSRKAVAAAAAQL 220 (226)
Q Consensus 187 ~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~~~l 220 (226)
+++|.+|...... ......+|+..+++.+++.+
T Consensus 154 ~v~H~~K~~~~~~-~~~~~~rGssal~~~~r~~~ 186 (239)
T cd01125 154 LVHHVRKGSAKDG-DTQEAARGASALVDGARWVR 186 (239)
T ss_pred EEeccCcccccCc-ccccccCcHHHHhcccceEE
Confidence 9999998654333 34455678888888777654
No 64
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=99.50 E-value=3e-13 Score=108.25 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=97.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------------------cCchH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---------------------------GFYTE 123 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---------------------------~~~~~ 123 (226)
...|.++||.||.++|||++..|+++++.+|.++|+.+..|+|||..- +..++
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~ 114 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEE 114 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHh
Confidence 347899999999999999999999999999999999999999999541 11111
Q ss_pred H-----------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCCh----HHHHHHHHHHHHHHHH
Q 036464 124 Q-----------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL----ALRTRVLSGIALKLMN 176 (226)
Q Consensus 124 ~-----------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~----~~r~~~l~~~~~~L~~ 176 (226)
+ +..+.+++..+.+.+.+.++++||+.++++.+.... ......++.+.+.|++
T Consensus 115 ~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeK 194 (293)
T KOG2859|consen 115 QLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEK 194 (293)
T ss_pred HHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHH
Confidence 1 222455666666777899999999999998876532 2334557788999999
Q ss_pred HHHHcCCEEEEeccccc
Q 036464 177 LAKKFSLALLEPNLATT 193 (226)
Q Consensus 177 la~~~~~~vi~~nq~~~ 193 (226)
+++.+...++.|.++.-
T Consensus 195 L~~d~~lv~~aT~~ti~ 211 (293)
T KOG2859|consen 195 LCKDAILVGMATVETIF 211 (293)
T ss_pred HHhhheeeeeeehhHHH
Confidence 99999999999888753
No 65
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.50 E-value=1.4e-13 Score=106.22 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=80.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------------------------HHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------------------------QSAVIN 129 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~--------------------------~~~~l~ 129 (226)
+++|+|+||+|||+++.+++.... ..+++|+|++.+...... ......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA------TKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL 74 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH------hcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH
Confidence 478999999999999999999886 368899999977311100 000111
Q ss_pred HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 130 ~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
.+........+++++|||+++.+..............+.+.+..|.+.+++.++++|+++|..+.....
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~ 143 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGD 143 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccC
Confidence 122233334589999999999876542110011223456778888888888999999999999865543
No 66
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.7e-12 Score=109.43 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=95.6
Q ss_pred hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccC----------------chHH--
Q 036464 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGF----------------YTEQ-- 124 (226)
Q Consensus 67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~----------------~~~~-- 124 (226)
+.+=+..|-...|+|++|+|||+++++++...+.+.++-+ ..++|+|++.|.+. .+..
T Consensus 82 Id~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvr 161 (402)
T COG3598 82 IDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVR 161 (402)
T ss_pred hhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhh
Confidence 3344678888999999999999999999999987776644 35899999988410 0000
Q ss_pred ------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 125 ------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 125 ------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
..+.++.+..+++. .|++||||++-+++..+ +. ...++..+.+.++++|..++|+||
T Consensus 162 n~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~-rp~~vViDp~v~f~~G~--s~--s~vqv~~fi~~~rkla~~l~caIi 236 (402)
T COG3598 162 NMDLTDVSGAADESDVLSPKLYRRFEKILEQK-RPDFVVIDPFVAFYEGK--SI--SDVQVKEFIKKTRKLARNLECAII 236 (402)
T ss_pred heeccccccCCCccccccHHHHHHHHHHHHHh-CCCeEEEcchhhhcCCc--cc--hhHHHHHHHHHHHHHHHhcCCeEE
Confidence 02345555555554 79999999999877553 22 235678999999999999999999
Q ss_pred EeccccccCCCC
Q 036464 187 EPNLATTANLAE 198 (226)
Q Consensus 187 ~~nq~~~~~~~~ 198 (226)
+++|.++....+
T Consensus 237 y~hHtskss~~~ 248 (402)
T COG3598 237 YIHHTSKSSGKN 248 (402)
T ss_pred EEeccccccCCC
Confidence 999999865544
No 67
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.40 E-value=3.7e-12 Score=101.27 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=68.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------------------------------
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------------------------------ 125 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------------------------------ 125 (226)
+++|.|+||+|||+|+++++...+ ..+.+|+|++.|. ..+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~------~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~ 72 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL------ARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEI 72 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH------HCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence 478999999999999999999987 5789999999763 11100
Q ss_pred ---------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 126 ---------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 126 ---------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
..+..+...+... +++++||||+++++.. +...... .+.+.++.+ ++.|+++|+++|....
T Consensus 73 s~~~~~~~~~~~~~i~~~~~~~-~~~~lviD~~~~~~~~---~~~~~~~---~i~~l~~~l-~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEF-KAKRVVIDSVSGLLLM---EQSTARL---EIRRLLFAL-KRFGVTTLLTSEQSGL 142 (187)
T ss_pred chhhhhhhHHHHHHHHHHHHHh-CCCEEEEeCcHHHhhc---ChHHHHH---HHHHHHHHH-HHCCCEEEEEeccccC
Confidence 1123344444443 7899999999987653 1111122 222333333 3569999999998764
No 68
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.18 E-value=4.2e-11 Score=102.09 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=105.6
Q ss_pred cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------ch
Q 036464 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------YT 122 (226)
Q Consensus 58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------------~~ 122 (226)
.-++.|+++| +|.++|++++++||.|+|||||+...+...+ .+|-+.+|-+.|+.+ ..
T Consensus 258 kRFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~------~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~ 330 (514)
T KOG2373|consen 258 KRFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLF------TQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLL 330 (514)
T ss_pred hhhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHH------hhhhhheeeeeecchHHHHHHHHHHHccCchH
Confidence 3578999999 5899999999999999999999999999987 578899999988611 11
Q ss_pred HHH---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464 123 EQS---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM 175 (226)
Q Consensus 123 ~~~---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~ 175 (226)
+++ ..++.++..+- -.++..||||.++.++....- ..+|-.....++..++
T Consensus 331 drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~y-V~di~HViIDNLQFmmg~~~~-~~Drf~~QD~iig~fR 408 (514)
T KOG2373|consen 331 DRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIY-VEDIQHVIIDNLQFMMGQGMM-ALDRFHLQDRIIGYFR 408 (514)
T ss_pred hhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHH-HHhhhhhhhhhHHHHhccchh-ccchhhhHHHHHHHHH
Confidence 111 01222222221 136899999999977654321 2346666778899999
Q ss_pred HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
++|.++||-|-++-|.+|.-++. .+.-.-.-||++.-..||
T Consensus 409 ~fAT~nn~HvTlVvHPRKed~d~-El~t~s~fGsAkatQEAD 449 (514)
T KOG2373|consen 409 QFATQNNIHVTLVVHPRKEDGDT-ELDTQSFFGSAKATQEAD 449 (514)
T ss_pred HHhhccceeEEEEecccccCCCc-eeeehhhccccccccccc
Confidence 99999999999999999864432 222233345555555554
No 69
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.03 E-value=3.5e-09 Score=88.22 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=34.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
+++++++|++++.++- ....++++.+++++++.|.|||++-|=
T Consensus 156 ~~~iLLLDEPTs~LDi---------~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 156 ETPILLLDEPTSHLDI---------AHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred CCCEEEeCCCccccCH---------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 6899999999987733 123378899999999999999988764
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=8.1e-09 Score=76.62 Aligned_cols=107 Identities=24% Similarity=0.199 Sum_probs=66.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc-----------------hHHHHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY-----------------TEQSAVINYLDKFVS 136 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~-----------------~~~~~~l~~l~~~l~ 136 (226)
+..+.|+||||+|||+++..++..... ....++|++.+.... .........+.+.++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998862 224799999763211 112223344555555
Q ss_pred hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.. .+.+|+||++..+......... ................+..+|++++.
T Consensus 76 ~~-~~~viiiDei~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 76 KL-KPDVLILDEITSLLDAEQEALL----LLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hc-CCCEEEEECCcccCCHHHHHHH----HhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44 4799999999976543211000 00000223344555677888877775
No 71
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.92 E-value=1.1e-08 Score=82.40 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=34.4
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+|+++.+|++++.++++ .+.+++..++.+|+ .|.|.+++.|-.
T Consensus 153 M~P~vmLFDEPTSALDPE---------lv~EVL~vm~~LA~-eGmTMivVTHEM 196 (240)
T COG1126 153 MDPKVMLFDEPTSALDPE---------LVGEVLDVMKDLAE-EGMTMIIVTHEM 196 (240)
T ss_pred CCCCEEeecCCcccCCHH---------HHHHHHHHHHHHHH-cCCeEEEEechh
Confidence 379999999999877653 45688899999986 567777777754
No 72
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.91 E-value=4.2e-08 Score=73.02 Aligned_cols=111 Identities=21% Similarity=0.154 Sum_probs=70.5
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~ 153 (226)
++|+||||+|||+++..++...- .++++++.... ...+....+..+-+......++.+++||++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---------cccccccccccccccccccccccccccccccccccceeeeeccchhcc
Confidence 57999999999999999998863 56888885421 1122223333333334444247999999999887
Q ss_pred hcCc-CChHHHHHHHHHHHHHHHHHHHH-cCCEEEEeccccccCC
Q 036464 154 RHGF-VDLALRTRVLSGIALKLMNLAKK-FSLALLEPNLATTANL 196 (226)
Q Consensus 154 ~~~~-~~~~~r~~~l~~~~~~L~~la~~-~~~~vi~~nq~~~~~~ 196 (226)
.... .........+..++..+.+.... .++.||.+++....++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred cccccccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 6651 12233444556666666666554 4578887776654443
No 73
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=9e-09 Score=87.37 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEE--Eeccc------cCchHHH-HHHHHHHHHHhhCCCc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY--IGKCL------GFYTEQS-AVINYLDKFVSEHKDV 141 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vly--i~~e~------~~~~~~~-~~l~~l~~~l~~~~~~ 141 (226)
|.-.+++++.||||+|||+||..+|.+..+-. .+.-.+... |+... .++.... .+.+.++++++.....
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~--~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRT--NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeee--cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 55678999999999999999999999987421 111222222 22210 0111112 3568889999887677
Q ss_pred eEEEEcCCchhhhcC-----cCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 142 KVVIIDSIAFHFRHG-----FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~-----~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
-.|.||++.++-... ..+..+..+.++.++..|.++-+..|+.++.|+..+..++.
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV 312 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence 899999998765332 12455567789999999999999999999999999987764
No 74
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.90 E-value=9.7e-09 Score=84.07 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=38.7
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.+|+++|.|+.++.++.. ...++++.|..+.++++.+.|+++|=...+.
T Consensus 158 ~~PklLIlDEptSaLD~s---------iQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~ 206 (252)
T COG1124 158 PEPKLLILDEPTSALDVS---------VQAQILNLLLELKKERGLTYLFISHDLALVE 206 (252)
T ss_pred cCCCEEEecCchhhhcHH---------HHHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence 479999999999877442 1237888899999999999999999664433
No 75
>PRK04296 thymidine kinase; Provisional
Probab=98.88 E-value=2.3e-08 Score=80.27 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec--cccC------------ch-----HHHHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK--CLGF------------YT-----EQSAVINYLDKF 134 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~--e~~~------------~~-----~~~~~l~~l~~~ 134 (226)
|.+++++|++|+|||+++++++.... +.+.+|+++.. +... .. .....+..+.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~------~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE------ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH------HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 78999999999999999999999886 46788888843 2100 00 00112223333
Q ss_pred HhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 135 VSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
...++++||||+++.+- . . + +..|.+.++..|++|+++.....
T Consensus 75 --~~~~~dvviIDEaq~l~-~---------~---~-v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 --EGEKIDCVLIDEAQFLD-K---------E---Q-VVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred --hCCCCCEEEEEccccCC-H---------H---H-HHHHHHHHHHcCCeEEEEecCcc
Confidence 23478999999997431 1 0 1 23455566789999999987654
No 76
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.87 E-value=1.4e-08 Score=83.09 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=34.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+|++|+-|+++.-++.+ .-..++..|+.+++++|.|||++.|=.
T Consensus 160 ~P~iilADEPTgnLD~~---------t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 160 NPKIILADEPTGNLDSK---------TAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred CCCeEEeeCccccCChH---------HHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999999755331 123678889999999999999998864
No 77
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.5e-08 Score=84.12 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccc-----c------CCCCCeEEEEeccc---c----------------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-----F------GGLGGKAIYIGKCL---G---------------- 119 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-----~------~~~~~~vlyi~~e~---~---------------- 119 (226)
-+++|+++.|.||+|+|||||...++.-.. |.. + .....++-|+.-.. +
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 489999999999999999999987765332 211 0 01124677776311 0
Q ss_pred -----Cc---h--HHH-HHH-----------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHH
Q 036464 120 -----FY---T--EQS-AVI-----------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTR 165 (226)
Q Consensus 120 -----~~---~--~~~-~~l-----------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~ 165 (226)
.. . +.. +.+ -.+.+.+. .+++++++|++.+-.+. ..
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~--~~p~lllLDEP~~gvD~-----~~--- 174 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA--QNPDLLLLDEPFTGVDV-----AG--- 174 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc--cCCCEEEecCCcccCCH-----HH---
Confidence 00 0 000 011 01222232 37999999999865532 12
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 166 VLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 166 ~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
...+.+.|+++.++ |++|++++|=-
T Consensus 175 -~~~i~~lL~~l~~e-g~tIl~vtHDL 199 (254)
T COG1121 175 -QKEIYDLLKELRQE-GKTVLMVTHDL 199 (254)
T ss_pred -HHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 22667788888888 99999998854
No 78
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.84 E-value=2.3e-08 Score=78.77 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=63.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------------------HHHHHHHHHHhh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------------------AVINYLDKFVSE 137 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------------------~~l~~l~~~l~~ 137 (226)
++.|.|++|||||++|.+++.. .+.+++|+.+... +...+ +....+.+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~-~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEA-FDDEMAERIARHRKRRPAHWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCc-CCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHh
Confidence 4789999999999999999865 2468999987631 11111 122355566655
Q ss_pred CCCceEEEEcCCchhhhcCcCChHH-HHHHHHHHHHHHHHHHHHcCCE-EEEeccccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLAL-RTRVLSGIALKLMNLAKKFSLA-LLEPNLATT 193 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~-r~~~l~~~~~~L~~la~~~~~~-vi~~nq~~~ 193 (226)
.++.++|+||+++............ ....+.+.+..|.+..++.+++ |+++|.+-.
T Consensus 71 ~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~ 128 (169)
T cd00544 71 LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGL 128 (169)
T ss_pred cCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCC
Confidence 4467899999999776554322000 0011223333344433446655 555555543
No 79
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.83 E-value=2.5e-08 Score=79.18 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
-+++|+++.|.|++|+|||||+.-++.... | +.|. .+..+.|+..+...+..+...+. +...+.. +++++++
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p-~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~-laral~~--~p~lllL 95 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI-P-NGDNDEWDGITPVYKPQYIDLSGGELQRVA-IAAALLR--NATFYLF 95 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC-C-CCcEEEECCEEEEEEcccCCCCHHHHHHHH-HHHHHhc--CCCEEEE
Confidence 379999999999999999999987776542 2 1110 01122222211111222222222 3333332 5799999
Q ss_pred cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
|++++.++. ..+ ..+...+++++++.+.+||++.|-..
T Consensus 96 DEPts~LD~-----~~~----~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 96 DEPSAYLDI-----EQR----LNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred ECCcccCCH-----HHH----HHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 999976532 112 25566677776665588888888754
No 80
>PRK08181 transposase; Validated
Probab=98.81 E-value=1.2e-08 Score=86.05 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhhCCCceEEEEcC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEHKDVKVVIIDS 148 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~~~~~~lvVIDs 148 (226)
..+.-+.|+||||+|||+|+..++..++ ..+.+|+|++.. ...+.+... ....+.++...+++++|||+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~------~~g~~v~f~~~~--~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDD 175 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALI------ENGWRVLFTRTT--DLVQKLQVARRELQLESAIAKLDKFDLLILDD 175 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHH------HcCCceeeeeHH--HHHHHHHHHHhCCcHHHHHHHHhcCCEEEEec
Confidence 4667799999999999999999998887 467899999853 222222111 12334555555789999999
Q ss_pred Cchh
Q 036464 149 IAFH 152 (226)
Q Consensus 149 l~~l 152 (226)
+...
T Consensus 176 lg~~ 179 (269)
T PRK08181 176 LAYV 179 (269)
T ss_pred cccc
Confidence 9853
No 81
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.81 E-value=2.9e-08 Score=77.68 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=64.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC-----------------chHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF-----------------YTEQSAVINYLD 132 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~-----------------~~~~~~~l~~l~ 132 (226)
+++|+++.|.|++|+|||||+.-++.... ...+-++++.+. .. +..+...+ .+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl-~la 94 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK-------PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMV-EIA 94 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHH-HHH
Confidence 88999999999999999999988776542 222334454321 00 01111111 223
Q ss_pred HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+.+.. +++++++|++++.++. ..+ ..+...|+++++ .+.++|++.|-..
T Consensus 95 ral~~--~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~~ 143 (163)
T cd03216 95 RALAR--NARLLILDEPTAALTP-----AEV----ERLFKVIRRLRA-QGVAVIFISHRLD 143 (163)
T ss_pred HHHhc--CCCEEEEECCCcCCCH-----HHH----HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 33332 6899999999976532 112 255566666654 4888888887754
No 82
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.81 E-value=6e-08 Score=82.27 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=74.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------------cCc-hHHHHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------------GFY-TEQSAVINYLDKFVS 136 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------------~~~-~~~~~~l~~l~~~l~ 136 (226)
..+|+|+++.|||+++.+++....-..+......+|+|+..-. +.. .........+..+++
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr 142 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLR 142 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999987642222222335899998431 000 011122344556777
Q ss_pred hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464 137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n 189 (226)
.. +++++|||+++.++.. +.....++++.||.++++.++++|++.
T Consensus 143 ~~-~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 143 RL-GVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred Hc-CCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 65 8999999999987654 233456889999999999999999875
No 83
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.80 E-value=4e-08 Score=77.98 Aligned_cols=107 Identities=17% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-C-chH----HHH----HH-----------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-F-YTE----QSA----VI----------- 128 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~-~~~----~~~----~l----------- 128 (226)
-+.+|+++.|.|++|+|||||+.-++.... ...+-++++.+.. . ... .+. .+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~ 93 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-------PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR 93 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC
Confidence 378999999999999999999988776542 2233445553210 0 000 000 00
Q ss_pred ------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 129 ------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 129 ------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
-.+...+. .+++++++|++++-++.. . ...+.+.|+++.++++.++|++.|-...
T Consensus 94 ~~~~LS~G~~qrl~laral~--~~p~llllDEP~~~LD~~-----~----~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 94 PFNELSGGERQRVLLARALA--QEPPILLLDEPTSHLDIA-----H----QIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CcccCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 01111121 268999999999766331 1 2256667777776668898888887543
No 84
>PRK12377 putative replication protein; Provisional
Probab=98.80 E-value=3.1e-08 Score=82.59 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=50.3
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH----HHHHHHHhhCCCceEEEEcCCc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI----NYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l----~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
.-+.|+|+||+|||+|+..++..+. ..+..|+|++.. +....+... ....+.++...++++||||++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~------~~g~~v~~i~~~--~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg 173 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL------AKGRSVIVVTVP--DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIG 173 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH------HcCCCeEEEEHH--HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 4688999999999999999999887 467889999853 222222110 1233455555689999999998
Q ss_pred hh
Q 036464 151 FH 152 (226)
Q Consensus 151 ~l 152 (226)
..
T Consensus 174 ~~ 175 (248)
T PRK12377 174 IQ 175 (248)
T ss_pred CC
Confidence 53
No 85
>PF13479 AAA_24: AAA domain
Probab=98.78 E-value=5.4e-08 Score=79.45 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=65.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--c-----------hHHHHHHHHHHHHHhhCCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--Y-----------TEQSAVINYLDKFVSEHKD 140 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~-----------~~~~~~l~~l~~~l~~~~~ 140 (226)
+-.+.|+|+||+|||+++..+ .+++||++|.-. . ..--.+.+.+..+.....+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------------~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------------PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------------CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCC
Confidence 456899999999999999765 367888877410 0 0000122223333334458
Q ss_pred ceEEEEcCCchhhhcC---cC-----------C--hHHHHHHHHHHHH-HHHHHHHHcCCEEEEeccccccCC
Q 036464 141 VKVVIIDSIAFHFRHG---FV-----------D--LALRTRVLSGIAL-KLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~---~~-----------~--~~~r~~~l~~~~~-~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
++.|||||++.+.+.- .. . ....+..+...+. .++++.+..+..||+|.|....-+
T Consensus 69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEED 141 (213)
T ss_pred CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEc
Confidence 9999999999754310 00 0 0112333333333 333456679999999999987655
No 86
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=7.7e-08 Score=72.15 Aligned_cols=98 Identities=21% Similarity=0.172 Sum_probs=66.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC--CCceEEEEcCCch
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH--KDVKVVIIDSIAF 151 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~--~~~~lvVIDsl~~ 151 (226)
+.++.|.||.|+|||+++.+++.... ...+++|++.+...... ....+ +.+.+.+. ++..+|+||+++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~iDEiq~ 72 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDPRDRR-LADPD-LLEYFLELIKPGKKYIFIDEIQY 72 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCHHHHH-Hhhhh-hHHHHHHhhccCCcEEEEehhhh
Confidence 56899999999999999999998874 45789999976211111 11111 22332221 2578999999985
Q ss_pred hhhcCcCChHHHHHHHHHHHHHHHHHHHHc-CCEEEEeccccccC
Q 036464 152 HFRHGFVDLALRTRVLSGIALKLMNLAKKF-SLALLEPNLATTAN 195 (226)
Q Consensus 152 l~~~~~~~~~~r~~~l~~~~~~L~~la~~~-~~~vi~~nq~~~~~ 195 (226)
+- .+...++.+.++. ++.+++|.......
T Consensus 73 ~~---------------~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 73 LP---------------DWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred hc---------------cHHHHHHHHHHhccCceEEEEccchHHH
Confidence 41 3445667777666 78999888766544
No 87
>PRK06526 transposase; Provisional
Probab=98.77 E-value=1.5e-08 Score=84.81 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=51.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVID 147 (226)
+..+.-+.|+||||+|||+++..++..++ ..+.+|+|++.. ...+.+.. ...+.+.+.+..++++||||
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~------~~g~~v~f~t~~--~l~~~l~~~~~~~~~~~~l~~l~~~dlLIID 166 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC------QAGHRVLFATAA--QWVARLAAAHHAGRLQAELVKLGRYPLLIVD 166 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH------HCCCchhhhhHH--HHHHHHHHHHhcCcHHHHHHHhccCCEEEEc
Confidence 44566799999999999999999998887 467889888643 22222211 11334445555578999999
Q ss_pred CCchh
Q 036464 148 SIAFH 152 (226)
Q Consensus 148 sl~~l 152 (226)
++...
T Consensus 167 D~g~~ 171 (254)
T PRK06526 167 EVGYI 171 (254)
T ss_pred ccccC
Confidence 99843
No 88
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.8e-08 Score=90.49 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=78.4
Q ss_pred hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCCc
Q 036464 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKDV 141 (226)
Q Consensus 67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~~ 141 (226)
|||-+|+| ++++||||+|||.||..+|..+-. +-.|.++. ++.|.+ .-+.++-+..+.. .|
T Consensus 332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGEA~V---------PFF~~sGS--EFdEm~VGvGArRVRdLF~aAk~~-AP 397 (752)
T KOG0734|consen 332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGEAGV---------PFFYASGS--EFDEMFVGVGARRVRDLFAAAKAR-AP 397 (752)
T ss_pred ccCcCCCc--eEEeCCCCCchhHHHHHhhcccCC---------CeEecccc--chhhhhhcccHHHHHHHHHHHHhc-CC
Confidence 57889999 899999999999999988876542 23333333 555543 2234444444443 78
Q ss_pred eEEEEcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 142 KVVIIDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
.+|+||+|.++=..... +.....+-+++++-.+.-+.+.-|+.||-........+.
T Consensus 398 cIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 398 CIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred eEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 99999999975433222 222344567788888888877778888876666555554
No 89
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.76 E-value=1.1e-07 Score=81.23 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
.+|+++|+|++++-+++ ..+ ..+.+.|++++++.+.+|++++|.......
T Consensus 153 ~~P~lliLDEPt~GLDp-----~~~----~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 153 HDPELLILDEPTSGLDP-----ESR----REIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred cCCCEEEECCCCcCCCH-----HHH----HHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 37899999999976643 223 367788899998888999999999865543
No 90
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.75 E-value=1.3e-07 Score=74.63 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=60.1
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HH-----------------HHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AV-----------------INYLDKFVS 136 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~-----------------l~~l~~~l~ 136 (226)
.++.|.|+||||||++|.+++... +.+++|+++.. .+.+.+ +- -..+.+.++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---------~~~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---------GLQVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLR 71 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---------CCCcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHH
Confidence 478999999999999999998764 24688998642 122211 00 013455555
Q ss_pred h-CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464 137 E-HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189 (226)
Q Consensus 137 ~-~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n 189 (226)
. .++.++|+||+++.+......... .......+..+.+..++.+.++|+|+
T Consensus 72 ~~~~~~~~VlID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~~~~tvVlVs 123 (170)
T PRK05800 72 ADAAPGRCVLVDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQLPAKIILVT 123 (170)
T ss_pred hhcCCCCEEEehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 345789999999987654322110 01122233334444345666555554
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.75 E-value=4.8e-08 Score=72.92 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC------------------c-hHHHHHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------Y-TEQSAVINYLD 132 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~------------------~-~~~~~~l~~l~ 132 (226)
+.+.++.|+|++|+|||+++.+++.....-.. .....+++|++..... . .......+.+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAE-IKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHH-HCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhh-ccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 35678999999999999999999998751000 0015688898843211 1 11223456677
Q ss_pred HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
+.+.+. +..+||||+++.+. . ..++..|+.+.++.++.+|++.+.
T Consensus 81 ~~l~~~-~~~~lviDe~~~l~-~------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRR-RVVLLVIDEADHLF-S------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHC-TEEEEEEETTHHHH-T------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhc-CCeEEEEeChHhcC-C------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 777765 55899999999753 1 256778888888999999998765
No 92
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=1.9e-07 Score=75.93 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=33.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+.+.|++++++.+.+||+++|-..
T Consensus 148 ~p~~lllDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 148 EPSLLLLDEPLSALDA-----KLR----EELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 7899999999976633 122 25667777777777899999988754
No 93
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.73 E-value=2.3e-07 Score=73.19 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---------------CCCeEEEEeccccCchHHH---------H
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---------------LGGKAIYIGKCLGFYTEQS---------A 126 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---------------~~~~vlyi~~e~~~~~~~~---------~ 126 (226)
+++|+++.|.|++|+|||||+..++.... | ..|. ....+.|+..+...+.... .
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR-P-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC-C-CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 78999999999999999999998876542 2 1110 0012233322111010000 0
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 127 VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 127 ~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..-.+...+. .+++++++|++++.++. ..+ ..+.+.|+++++ .+.++|++.|-..
T Consensus 103 qrv~la~al~--~~p~~lllDEPt~~LD~-----~~~----~~l~~~l~~~~~-~~~tii~~sh~~~ 157 (173)
T cd03246 103 QRLGLARALY--GNPRILVLDEPNSHLDV-----EGE----RALNQAIAALKA-AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHh--cCCCEEEEECCccccCH-----HHH----HHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 0111222222 36899999999976643 122 255566666654 5888888887654
No 94
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.73 E-value=8.2e-08 Score=78.03 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=34.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. .. ...+.+.|++++++.+.+||++.|-..
T Consensus 148 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 148 EPKVFLMDEPLSNLDA-----KL----RVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 6899999999976633 11 236677788888778899999988754
No 95
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.72 E-value=1.6e-08 Score=80.30 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=45.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEcCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVIDsl 149 (226)
.+.-+.|.|++|+|||+|+..++..++ ..+.+|+|++.. +..+.+.. -....+.+....+++++|||++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~------~~g~~v~f~~~~--~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDl 117 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI------RKGYSVLFITAS--DLLDELKQSRSDGSYEELLKRLKRVDLLILDDL 117 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH------HTT--EEEEEHH--HHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc------cCCcceeEeecC--ceeccccccccccchhhhcCccccccEeccccc
Confidence 456699999999999999999999887 578899999853 11111110 0011223333336899999999
Q ss_pred ch
Q 036464 150 AF 151 (226)
Q Consensus 150 ~~ 151 (226)
..
T Consensus 118 G~ 119 (178)
T PF01695_consen 118 GY 119 (178)
T ss_dssp TS
T ss_pred ce
Confidence 84
No 96
>PRK08727 hypothetical protein; Validated
Probab=98.72 E-value=7.9e-08 Score=79.56 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=61.5
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR 154 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~ 154 (226)
..+.|+|++|+|||+|+..++.... ..+.+++|++.+ . ....+.+.++...++++||||++..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~------~~~~~~~y~~~~--~------~~~~~~~~~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE------QAGRSSAYLPLQ--A------AAGRLRDALEALEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEEeHH--H------hhhhHHHHHHHHhcCCEEEEeCcccccC
Confidence 4599999999999999999988876 467799999853 1 1123334444445689999999985432
Q ss_pred cCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 155 HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 155 ~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
. . ..+ ..+. .+.+..++.+..||+|.+.
T Consensus 108 ~---~--~~~---~~lf-~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 108 Q---R--EDE---VALF-DFHNRARAAGITLLYTARQ 135 (233)
T ss_pred C---h--HHH---HHHH-HHHHHHHHcCCeEEEECCC
Confidence 1 1 111 1233 3444445667777777664
No 97
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=2e-07 Score=79.15 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=34.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++. .. ...++..|++++++.|.+||++.|-...
T Consensus 158 ~p~lLlLDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 158 RPKIIILDEATSMLDP-----EG----RLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred CCCEEEEECCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 7899999999976633 12 2367778888888889999988877543
No 98
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=9.9e-08 Score=78.02 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=33.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+.+.|+++.++.+.+||+++|-..
T Consensus 149 ~p~lllLDEPt~~LD~-----~~~----~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 149 DPDVLLLDEPFSALDA-----LTR----EQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred CCCEEEECCCCCCCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 6899999999976633 122 25666777777777889888888764
No 99
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.6e-07 Score=72.86 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=65.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--------------CCCeEEEEeccccCc-----hHHHH-----
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--------------LGGKAIYIGKCLGFY-----TEQSA----- 126 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--------------~~~~vlyi~~e~~~~-----~~~~~----- 126 (226)
+++|+++.|.|++|+|||||+.-++.... | ..|. ....+.|+..+...+ .+.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK-P-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 78999999999999999999988776542 2 1110 012344444321111 11110
Q ss_pred -HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 127 -VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 127 -~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..-.+...+. .+++++++|++++.++. ..+ ..+.+.|++++++ +.++|++.|-..
T Consensus 101 ~qrv~laral~--~~p~illlDEPt~~LD~-----~~~----~~l~~~l~~~~~~-g~tiii~th~~~ 156 (173)
T cd03230 101 KQRLALAQALL--HDPELLILDEPTSGLDP-----ESR----REFWELLRELKKE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEECCCHH
Confidence 0112222333 36899999999976632 122 2566777777765 888888887654
No 100
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.70 E-value=2.1e-07 Score=73.80 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=63.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCC-----CCeEEEEeccc----cC-------------chHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGL-----GGKAIYIGKCL----GF-------------YTEQSAV 127 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~-----~~~vlyi~~e~----~~-------------~~~~~~~ 127 (226)
+++|+++.|.||+|+|||||+..+... . +. .+.+. ..++.|++... .. +..+...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~-~-G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA-S-GKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc-C-CcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 789999999999999999999766421 0 00 00000 12355654210 00 0001111
Q ss_pred HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+ .+...+...+.++++++|++++-++.. . ...+.+.|+++++ .+.+||++.|-...
T Consensus 96 l-~laral~~~~~p~llLlDEPt~~LD~~-----~----~~~l~~~l~~~~~-~g~tvIivSH~~~~ 151 (176)
T cd03238 96 V-KLASELFSEPPGTLFILDEPSTGLHQQ-----D----INQLLEVIKGLID-LGNTVILIEHNLDV 151 (176)
T ss_pred H-HHHHHHhhCCCCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence 1 223333332348999999999765331 1 2255566666654 78999998887653
No 101
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.3e-07 Score=74.96 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----------------CCCeEEEEeccccCc-----hHHH---
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----------------LGGKAIYIGKCLGFY-----TEQS--- 125 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----------------~~~~vlyi~~e~~~~-----~~~~--- 125 (226)
+++|+++.|.|++|+|||||+..++.... +..|. ....+.|+..+...+ .+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 78999999999999999999988875432 11110 001233333221000 1110
Q ss_pred -----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 126 -----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 126 -----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
...-.+...+. .+++++++|++++-++. ..+ ..+.+.|++++++++.++|+++|-..
T Consensus 101 lS~G~~qr~~la~al~--~~p~llilDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 101 LSGGQQQRVALARALA--MDPDVLLLDEPTSALDP-----ITR----REVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCHHHHHHHHHHHHHH--CCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00111222222 26899999999976533 122 25666777777776889999888654
No 102
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.69 E-value=9.2e-08 Score=79.60 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=49.1
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-----HHHHHHHHhhCCCceEEEEcCC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-----INYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-----l~~l~~~l~~~~~~~lvVIDsl 149 (226)
..+.|+|+||+|||+|+..++..+. ..+.+|+|++.. +....+.. -....+++....++++||||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~------~~g~~v~~it~~--~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL------LRGKSVLIITVA--DIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEHH--HHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCC
Confidence 3689999999999999999999886 467899999843 22211110 0122344444457899999999
Q ss_pred chh
Q 036464 150 AFH 152 (226)
Q Consensus 150 ~~l 152 (226)
...
T Consensus 172 g~~ 174 (244)
T PRK07952 172 GVQ 174 (244)
T ss_pred CCC
Confidence 864
No 103
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=80.05 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhh-CCCceEEEE
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSE-HKDVKVVII 146 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~-~~~~~lvVI 146 (226)
++.|..+.|+||||+|||+|+..++.... ..+.+|.|++.. .....+... ..+...+.+ ...++++||
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~------~~G~~v~~~~~~--~l~~~l~~a~~~~~~~~~~~~~~~~~dlLii 170 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV------RAGIKVRFTTAA--DLLLQLSTAQRQGRYKTTLQRGVMAPRLLII 170 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH------HcCCeEEEEeHH--HHHHHHHHHHHCCcHHHHHHHHhcCCCEEEE
Confidence 67889999999999999999999987765 467899999843 222121110 112233322 346799999
Q ss_pred cCCch
Q 036464 147 DSIAF 151 (226)
Q Consensus 147 Dsl~~ 151 (226)
|++..
T Consensus 171 Ddlg~ 175 (259)
T PRK09183 171 DEIGY 175 (259)
T ss_pred ccccc
Confidence 99974
No 104
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.3e-07 Score=76.87 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=34.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. .+ ..+.+.|++++++++.++|+++|-...
T Consensus 146 ~p~llllDEP~~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 146 DKPVLLLDEPFAALDPA-----LR----AEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred CCCEEEEcCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 78999999999766431 22 256677777877789999999887653
No 105
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.69 E-value=1.2e-07 Score=77.44 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. .+ ..+.+.|++++++.+.+||+++|-...
T Consensus 158 ~p~lllLDEP~~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 158 DPKIILADEPTGNLDSE-----TG----KEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred CCCEEEEcCCcccCCHH-----HH----HHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 78999999999766331 22 256677777777678999999887543
No 106
>PRK06921 hypothetical protein; Provisional
Probab=98.68 E-value=1.3e-07 Score=79.73 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=49.5
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCchHHH-HHHHHHHHHHhhCCCceEEEEcCCc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYTEQS-AVINYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~~~~-~~l~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
+.-+.|+|+||+|||+|+..++..+. .. +..|+|++.. .....+ .......+.+....++++||||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~------~~~g~~v~y~~~~--~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM------RKKGVPVLYFPFV--EGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh------hhcCceEEEEEHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 56789999999999999999999876 34 7899999853 111221 1123334445555578999999995
No 107
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=1.3e-07 Score=77.91 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=34.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. .. ...+.+.|+.++++.+.+||++.|-...
T Consensus 158 ~p~lllLDEP~~~LD~-----~~----~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 158 NPKVLLCDEATSALDP-----ET----TQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred CCCEEEecCCCCcCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 7899999999976533 11 2256677778877778999999887654
No 108
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.2e-07 Score=72.85 Aligned_cols=39 Identities=28% Similarity=0.201 Sum_probs=32.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+.||++..|+|++|+|||||+..++..+. -..+.|.|..
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~------p~~G~v~Y~~ 67 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLT------PDAGTVTYRM 67 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccC------CCCCeEEEEc
Confidence 68999999999999999999998887765 2445677766
No 109
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.68 E-value=3e-07 Score=70.45 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------cCchHHHHHHHHHHHHHhhCCCceE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------GFYTEQSAVINYLDKFVSEHKDVKV 143 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------~~~~~~~~~l~~l~~~l~~~~~~~l 143 (226)
-+++|+++.|.|++|+|||||+..++.... ...+-++++... ..+..+...+.-...++. ++++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~---~p~i 91 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELE-------PDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLE---NPNL 91 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCC-------CCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhc---CCCE
Confidence 378999999999999999999988776542 112223333210 022233223333333332 6799
Q ss_pred EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++|++.+-++. ..+. .+.+.|+++ +.+++++.|-..
T Consensus 92 lllDEP~~~LD~-----~~~~----~l~~~l~~~----~~til~~th~~~ 128 (144)
T cd03221 92 LLLDEPTNHLDL-----ESIE----ALEEALKEY----PGTVILVSHDRY 128 (144)
T ss_pred EEEeCCccCCCH-----HHHH----HHHHHHHHc----CCEEEEEECCHH
Confidence 999999976532 1121 333344333 568888877643
No 110
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.7e-07 Score=76.49 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=36.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
++++|.=|++.+-+++.. -.++|..|++++++.|+|||+.-|..
T Consensus 165 ~pkiILADEPvasLDp~~---------a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 165 QPKIILADEPVASLDPES---------AKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred CCCEEecCCcccccChhh---------HHHHHHHHHHHHHHcCCEEEEEechH
Confidence 689999999997664421 23788999999999999999988875
No 111
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3e-07 Score=78.08 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=34.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+.+.|++++++++.+||++.|-..
T Consensus 158 ~p~lllLDEPt~gLD~-----~~~----~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 158 QPDIIILDEATSMLDP-----RGR----REVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 7899999999976633 122 36677788888888999998887754
No 112
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.67 E-value=1.5e-07 Score=77.85 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=34.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
+++++++|++++-++. .. ...+.+.|++++++.+.++|++.|-.....
T Consensus 150 ~p~llllDEP~~~LD~-----~~----~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 150 RPALLLLDEPTVGLDP-----AS----RAAIVAHVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred CCCEEEEcCCccCCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence 6899999999976533 12 225667777887767889998888765443
No 113
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=1.6e-07 Score=76.84 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=33.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+.+.|++++++++.+||++.|-..
T Consensus 149 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQ-----T----RAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred CCCEEEEcCCccCCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 78999999999766331 1 225666777777777889998888654
No 114
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.67 E-value=5.5e-07 Score=72.80 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=63.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhcc-------ccccCCCCCeEEEEeccccCch-----HHHHHHHHHHHHHhhC
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI-------PVEFGGLGGKAIYIGKCLGFYT-----EQSAVINYLDKFVSEH 138 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l-------p~~~~~~~~~vlyi~~e~~~~~-----~~~~~l~~l~~~l~~~ 138 (226)
+..|+++.|+||+|+|||||+..++..+.+ |..........+|......+.. ........+.++++..
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 455799999999999999999999866532 1000000011222221110000 0011224566666665
Q ss_pred C--CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 K--DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~--~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
. +++++++|++.+-... ..+......+ ++.+. +.+.++|++.|-..
T Consensus 102 ~~~~p~llllDEp~~glD~-----~~~~~l~~~l---l~~l~-~~~~tiiivTH~~~ 149 (199)
T cd03283 102 KKGEPVLFLLDEIFKGTNS-----RERQAASAAV---LKFLK-NKNTIGIISTHDLE 149 (199)
T ss_pred cCCCCeEEEEecccCCCCH-----HHHHHHHHHH---HHHHH-HCCCEEEEEcCcHH
Confidence 4 7899999999864422 2232222222 44444 45888988888754
No 115
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.3e-07 Score=80.05 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=39.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+|++++-|+.++.+++. -...++..|+++-+++|+|+++++|....+
T Consensus 159 ~P~iLL~DEaTSALDP~---------TT~sIL~LL~~In~~lglTIvlITHEm~Vv 205 (339)
T COG1135 159 NPKILLCDEATSALDPE---------TTQSILELLKDINRELGLTIVLITHEMEVV 205 (339)
T ss_pred CCCEEEecCccccCChH---------HHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence 69999999999877553 233788999999999999999999987533
No 116
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.67 E-value=4e-07 Score=75.96 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEecccc-----CchHHHH--------------
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLG-----FYTEQSA-------------- 126 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~-----~~~~~~~-------------- 126 (226)
|-+.+|+++.|.|++|+|||||+..++.... | ..|. .+.++.|+..... ...+.+.
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p-~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLK-P-DEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-C-CCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 5588999999999999999999987766432 2 2221 1225566553210 0000000
Q ss_pred -HHHH--HHHHHhh-------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 127 -VINY--LDKFVSE-------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 127 -~l~~--l~~~l~~-------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
.++. +...+.. ..+++++++|++++.++. ..+ ..+.+.|++++++.+.+
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV-----EQR----LMASKVIRRFAENNEKT 168 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCE
Confidence 0000 0000100 237899999999976633 122 25667788888888899
Q ss_pred EEEeccccc
Q 036464 185 LLEPNLATT 193 (226)
Q Consensus 185 vi~~nq~~~ 193 (226)
||++.|-..
T Consensus 169 iiivsHd~~ 177 (246)
T cd03237 169 AFVVEHDII 177 (246)
T ss_pred EEEEeCCHH
Confidence 998888754
No 117
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.66 E-value=1.2e-07 Score=82.29 Aligned_cols=70 Identities=24% Similarity=0.206 Sum_probs=49.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH-----HHHHHHHhhCCCceEEEEcCC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI-----NYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l-----~~l~~~l~~~~~~~lvVIDsl 149 (226)
.-+.|+|++|+|||+|+..+|..+. ..+..|+|++.. .....+... ......+....+++++|||++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~------~~g~~V~y~t~~--~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL------DRGKSVIYRTAD--ELIEILREIRFNNDKELEEVYDLLINCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEEHH--HHHHHHHHHHhccchhHHHHHHHhccCCEEEEecc
Confidence 5689999999999999999999887 568899999854 222222110 111222444457899999999
Q ss_pred chh
Q 036464 150 AFH 152 (226)
Q Consensus 150 ~~l 152 (226)
...
T Consensus 256 G~e 258 (329)
T PRK06835 256 GTE 258 (329)
T ss_pred CCC
Confidence 864
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.66 E-value=1.6e-07 Score=76.21 Aligned_cols=28 Identities=32% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998877543
No 119
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.4e-07 Score=77.30 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887654
No 120
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.2e-07 Score=74.19 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
-+|+|.++.|.||+|+|||||.--+++-. ..+.+.++|++
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-------~~d~G~i~i~g 62 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLL-------KKDSGEITIDG 62 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhc-------cccCceEEEee
Confidence 48999999999999999999997666655 35667788884
No 121
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=2.7e-07 Score=75.59 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
-+++|+++.|.|++|+|||+|+..+..... +..+-++|++
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-------P~~GeI~i~G 69 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLR-------PDKGEILIDG 69 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCC-------CCCCeEEEcC
Confidence 389999999999999999999988876653 3444455553
No 122
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.65 E-value=1.8e-07 Score=76.80 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=34.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++. .. ...+...|++++++++.+||++.|-...
T Consensus 164 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 164 RPDVLFADEPTGNLDR-----QT----GDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred CCCEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 7899999999976633 11 2256677888877888999988887653
No 123
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.65 E-value=1.6e-07 Score=82.07 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=34.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|+++++|++++.++.. . ...++..|+++.++.+++||++.|-..
T Consensus 158 ~P~iLLlDEPts~LD~~-----t----~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 158 NPKVLLCDEATSALDPA-----T----TQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 68999999999766431 1 236777888888888999999888654
No 124
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.65 E-value=7.9e-08 Score=83.55 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------------c---C------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------G---F------ 120 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------~---~------ 120 (226)
-+++|+++.|.||+||||||++..+|--.. ...+-++++++. + +
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-------p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVa 99 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-------PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA 99 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhh
Confidence 489999999999999999999998886653 445556666442 0 0
Q ss_pred ---------chHHH-HHH---------------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464 121 ---------YTEQS-AVI---------------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALR 163 (226)
Q Consensus 121 ---------~~~~~-~~l---------------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r 163 (226)
..+.+ +.+ -.+.+.+. .+|+++.+|++-+.++. .-|
T Consensus 100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~--~~P~vLLLDEPlSaLD~-----kLR 172 (352)
T COG3842 100 FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV--PEPKVLLLDEPLSALDA-----KLR 172 (352)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh--cCcchhhhcCcccchhH-----HHH
Confidence 00100 000 01112222 37999999999865532 223
Q ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 164 TRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
. ++...|+++.++.|+|+|++.|=.
T Consensus 173 ~----~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 173 E----QMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred H----HHHHHHHHHHHhcCCeEEEEECCH
Confidence 2 566789999999999999888854
No 125
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.65 E-value=1.7e-07 Score=78.18 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC--chHH---H-HHH--------------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF--YTEQ---S-AVI-------------- 128 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~--~~~~---~-~~l-------------- 128 (226)
-+.+|++..|+|++|+||||++..++.-.- ...+-+|++... .. ..+. + +++
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~-------pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryP 107 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE-------PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYP 107 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC-------CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence 389999999999999999999987776542 344556666431 00 0001 0 011
Q ss_pred --------H--HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 129 --------N--YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 129 --------~--~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+ .+.+.+. -+|+++|.|++.+.++.. -+ .++++.|+.+.+++|++.+++.|--.
T Consensus 108 helSGGQrQRi~IARALa--l~P~liV~DEpvSaLDvS-----iq----aqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 108 HELSGGQRQRIGIARALA--LNPKLIVADEPVSALDVS-----VQ----AQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred cccCchhhhhHHHHHHHh--hCCcEEEecCchhhcchh-----HH----HHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 0 1122222 269999999999877432 22 36788899999999999999998654
No 126
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=3.3e-07 Score=80.47 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..|. .+...|+++.++.++++|+++|-..
T Consensus 152 ~P~llLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 152 EPAVFLFDEPLSNLDA-----KLRV----QMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7999999999976532 2222 5666778888888999999988643
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.65 E-value=4.6e-07 Score=74.73 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=33.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. .. ...+.+.|++++++.+.+||++.|-..
T Consensus 132 ~p~lllLDEPt~gLD~-----~~----~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 132 RPKVLLLDEPFGALDA-----LT----RGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred CCCEEEEcCCCcCCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976643 12 225667777888778889988888753
No 128
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=3.6e-07 Score=75.65 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=38.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
+|+++|+|++++.++. .. ..++++.++++..+.+.|+|++.|-......
T Consensus 156 ~P~iliLDEPta~LD~-----~~----~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 156 GPEILLLDEPTAGLDP-----KG----RRELLELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred CCCEEEEcCCCCCCCH-----HH----HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 7999999999987643 12 3377888899998989999998887765443
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=98.64 E-value=1.6e-07 Score=77.72 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=60.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR 154 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~ 154 (226)
..+.|+|++|+|||+|+..++..+. ..+.+|+|++.+ ++. .....+++...+++++|||.++.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~------~~~~~v~y~~~~--~~~------~~~~~~~~~~~~~d~LiiDDi~~~~~ 111 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE------QRGEPAVYLPLA--ELL------DRGPELLDNLEQYELVCLDDLDVIAG 111 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEeeHH--HHH------hhhHHHHHhhhhCCEEEEechhhhcC
Confidence 4578999999999999998887765 457899999965 111 11233444334578999999985421
Q ss_pred cCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 155 HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 155 ~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
. ...+. .+.. +-+...+.|..+|++....
T Consensus 112 ~-----~~~~~---~Lf~-l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 112 K-----ADWEE---ALFH-LFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred C-----hHHHH---HHHH-HHHHHHhcCCEEEEeCCCC
Confidence 1 11112 2333 3333456677777776643
No 130
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.64 E-value=2.2e-07 Score=77.00 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
+....|+||+|+|||+|+..++.... ..+.+|.|++.+.. . . ...++++...+.++|+||+++.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~------~~~~~v~y~~~~~~--~---~---~~~~~~~~~~~~dlliiDdi~~~ 109 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS------QRGRAVGYVPLDKR--A---W---FVPEVLEGMEQLSLVCIDNIECI 109 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEEHHHH--h---h---hhHHHHHHhhhCCEEEEeChhhh
Confidence 35789999999999999999988776 35789999986421 1 1 11122222234689999999854
No 131
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=1.9e-07 Score=77.12 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=33.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++.. . ...+.+.|++++++.+.+||++.|-..
T Consensus 154 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 154 DPELLLYDEPTAGLDPI-----A----SGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred CCCEEEecCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 78999999999766331 1 225667777777777889988888764
No 132
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.64 E-value=3.8e-07 Score=78.52 Aligned_cols=29 Identities=24% Similarity=0.070 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+..++...
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999998887644
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.64 E-value=5e-07 Score=67.53 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH----HHHHHHhhCCCceEEEEc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN----YLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~----~l~~~l~~~~~~~lvVID 147 (226)
.+..+.|.|+||+|||+++..++.... ..+..++|++............ .. ..........+..++++|
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilD 91 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF------RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFID 91 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh------cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEe
Confidence 466899999999999999999998875 3567899998542111111111 11 111122223467999999
Q ss_pred CCchhhhcCcCChHHHHHHHHHHHHHHHHHHH----HcCCEEEEeccccc
Q 036464 148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAK----KFSLALLEPNLATT 193 (226)
Q Consensus 148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~----~~~~~vi~~nq~~~ 193 (226)
++..+.. .....+...+..+.. ..++.+|++.+...
T Consensus 92 e~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 92 EIDSLSR----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ChhhhhH----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 9986511 111233344444332 35788887766554
No 134
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.64 E-value=2.2e-07 Score=75.93 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++++|++++-++.. .+ ..+.+.|++++++.+.+||++.|-....
T Consensus 159 ~p~illlDEPt~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNN-----NA----KIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred CCCEEEEeCCCCcCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 78999999999766331 12 2566677777777788999888876543
No 135
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.64 E-value=2.9e-07 Score=82.09 Aligned_cols=118 Identities=15% Similarity=0.090 Sum_probs=77.5
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------- 118 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------- 118 (226)
++++ |+...|.+- =-+++|++..|.|++|+|||||+.-+.-.+. +..+-+|+++..
T Consensus 12 K~f~-~~~And~V~-l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-------P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 12 KRFP-GVVANDDVS-LSVKKGEIHALLGENGAGKSTLMKILFGLYQ-------PDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEcC-CEEecCcee-eeecCCcEEEEeccCCCCHHHHHHHHhCccc-------CCcceEEECCEEeccCCHHHHHHcCCc
Confidence 3444 666666542 1489999999999999999999977766553 445556666431
Q ss_pred -----------cCchHHH---------------HH-------------------------------HHHHHHHHhhCCCc
Q 036464 119 -----------GFYTEQS---------------AV-------------------------------INYLDKFVSEHKDV 141 (226)
Q Consensus 119 -----------~~~~~~~---------------~~-------------------------------l~~l~~~l~~~~~~ 141 (226)
+...|.+ .. ++-+..+ ..++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL---yr~a 159 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL---YRGA 159 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH---hcCC
Confidence 0000100 00 1111111 2368
Q ss_pred eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++|+|++++.+.+ ++..+++..|++++ +.|.+||+++|--+
T Consensus 160 ~iLILDEPTaVLTP---------~E~~~lf~~l~~l~-~~G~tIi~ITHKL~ 201 (501)
T COG3845 160 RLLILDEPTAVLTP---------QEADELFEILRRLA-AEGKTIIFITHKLK 201 (501)
T ss_pred CEEEEcCCcccCCH---------HHHHHHHHHHHHHH-HCCCEEEEEeccHH
Confidence 99999999987754 45668888999886 57999999988754
No 136
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.64 E-value=2.2e-07 Score=78.01 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=65.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----CCCeEEEEeccc--cC---chHHHH------HHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----LGGKAIYIGKCL--GF---YTEQSA------VIN 129 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----~~~~vlyi~~e~--~~---~~~~~~------~l~ 129 (226)
+.+|+++.|.|++|+|||||+.-++.... | +.| + ....+.|+..+. +. ..+.+. ...
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p-~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 112 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLET-P-SAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC-C-CCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHH
Confidence 78999999999999999999988776542 2 111 0 012344544321 00 001110 000
Q ss_pred HHHHHHhh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHc
Q 036464 130 YLDKFVSE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 130 ~l~~~l~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~ 181 (226)
.+.++++. ..+++++++|++++-++. ..+ ..+.+.|++++++.
T Consensus 113 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~ 183 (257)
T PRK11247 113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-----LTR----IEMQDLIESLWQQH 183 (257)
T ss_pred HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHHc
Confidence 11111110 126899999999976633 122 25666777777778
Q ss_pred CCEEEEeccccc
Q 036464 182 SLALLEPNLATT 193 (226)
Q Consensus 182 ~~~vi~~nq~~~ 193 (226)
+.+||+++|-..
T Consensus 184 ~~tviivsHd~~ 195 (257)
T PRK11247 184 GFTVLLVTHDVS 195 (257)
T ss_pred CCEEEEEeCCHH
Confidence 899998888753
No 137
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.63 E-value=5.2e-07 Score=70.36 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=39.1
Q ss_pred cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++-+-||.+= =-+.+|+.+.|+||+|+|||+|..++|.-.. ...+.+|+.+|
T Consensus 14 ~~a~il~~is-l~v~~Ge~iaitGPSG~GKStllk~va~Lis-------p~~G~l~f~Ge 65 (223)
T COG4619 14 GDAKILNNIS-LSVRAGEFIAITGPSGCGKSTLLKIVASLIS-------PTSGTLLFEGE 65 (223)
T ss_pred CCCeeeccee-eeecCCceEEEeCCCCccHHHHHHHHHhccC-------CCCceEEEcCc
Confidence 3444455432 1478999999999999999999999987764 45667777765
No 138
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.63 E-value=4.2e-07 Score=78.05 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+..++...
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998777643
No 139
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=4.5e-07 Score=74.71 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=32.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++++.+|++-..++. ..|. .+...|.++.++.+.||+++.|=.
T Consensus 148 ~P~lLLlDEPFgALDa-----lTR~----~lq~~l~~lw~~~~~TvllVTHdi 191 (248)
T COG1116 148 RPKLLLLDEPFGALDA-----LTRE----ELQDELLRLWEETRKTVLLVTHDV 191 (248)
T ss_pred CCCEEEEcCCcchhhH-----HHHH----HHHHHHHHHHHhhCCEEEEEeCCH
Confidence 6899999999765532 2233 455677788889999999888854
No 140
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=85.60 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=37.6
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+|+++|.|++++.++.. .-.+++..|+++.++.|+++|+++|--.
T Consensus 171 ~~P~LLIaDEPTTaLDvt---------~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 171 LKPKLLIADEPTTALDVT---------TQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred CCCCEEEECCCccccCHH---------HHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 379999999999876432 2237888999999999999999999653
No 141
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=3e-07 Score=74.20 Aligned_cols=31 Identities=29% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..|+++.++.|.||+|||||||+..+-+..-
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4699999999999999999999987766553
No 142
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.63 E-value=4.6e-07 Score=73.80 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|+++++|+++.-+.+ ..+.++.+.++++.++.++||+++-|-.+
T Consensus 154 ~PklLLLDEPs~GLaP---------~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 154 RPKLLLLDEPSEGLAP---------KIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred CCCEEEecCCccCcCH---------HHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 7999999999964432 34668899999999988999999998765
No 143
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.2e-07 Score=77.88 Aligned_cols=29 Identities=31% Similarity=0.247 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887643
No 144
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.6e-07 Score=71.61 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=64.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------------CchHHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------------FYTEQSAVINYLDK 133 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------------~~~~~~~~l~~l~~ 133 (226)
+++|+++.|.|++|+|||+|+..++...- ...+-++++.+.. .+..+...+ .+..
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~-------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~-~l~~ 93 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK-------PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRV-ALAR 93 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHH-HHHH
Confidence 78999999999999999999988876542 2233345554310 111111112 2333
Q ss_pred HHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 134 FVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 134 ~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+.. +++++++|++++-++. .. ...+.+.|+.+... +.+++++.|-..
T Consensus 94 ~l~~--~~~i~ilDEp~~~lD~-----~~----~~~l~~~l~~~~~~-~~tii~~sh~~~ 141 (157)
T cd00267 94 ALLL--NPDLLLLDEPTSGLDP-----AS----RERLLELLRELAEE-GRTVIIVTHDPE 141 (157)
T ss_pred HHhc--CCCEEEEeCCCcCCCH-----HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 3332 5899999999976532 11 22455666666554 788888888754
No 145
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=6e-07 Score=72.82 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998888653
No 146
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.62 E-value=5.2e-07 Score=79.14 Aligned_cols=45 Identities=7% Similarity=0.178 Sum_probs=34.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..| .++...|+++.++.++++|++.|-..
T Consensus 152 ~P~llLLDEP~s~LD~-----~~r----~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 152 SPGLLLLDEPLSALDA-----RVR----EHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 6899999999976532 222 25667788888889999999888764
No 147
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.62 E-value=2.6e-07 Score=75.08 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887653
No 148
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.62 E-value=5.2e-07 Score=74.62 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
-+++|+++.+.||+||||||++..+-+-+ .+..+-++|+.+
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLi-------ept~G~I~i~g~ 63 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLI-------EPTSGEILIDGE 63 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhccc-------CCCCceEEECCe
Confidence 38999999999999999999997766554 345566778755
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.61 E-value=4.2e-07 Score=80.84 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=69.2
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
-|++++.-++|+||||+|||+++..+|.... ...+.+..... .+ .+....+..+-..... ..+.+|+
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---------~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~-~~P~ILf 243 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---------ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE-NAPSIIF 243 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEehHHHHHHhcchhHHHHHHHHHHHHh-cCCeEEE
Confidence 3688888899999999999999999988753 22333332210 00 1111223333333433 3789999
Q ss_pred EcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 146 IDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 146 IDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
||++.++....... ...-++.+.+++..+..+....++.||++.+....++.
T Consensus 244 IDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 244 IDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred EECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 99999876433221 11222344455555554444567777776665444443
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=6.4e-07 Score=76.18 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=34.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. ..+ ..+...|++++++.+.+||++.|-...
T Consensus 161 ~P~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tvli~tH~~~~ 206 (282)
T PRK13640 161 EPKIIILDESTSMLDP-----AGK----EQILKLIRKLKKKNNLTVISITHDIDE 206 (282)
T ss_pred CCCEEEEECCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 7899999999976533 122 256677788877789999988877543
No 151
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.61 E-value=2.4e-07 Score=75.45 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887643
No 152
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.5e-07 Score=80.14 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=35.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+|++||-|++++.++.. ...++++.|+++.+++|.++|+++|=-
T Consensus 171 ~P~LlIADEPTTALDvt---------~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 171 NPKLLIADEPTTALDVT---------VQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred CCCEEEeCCCcchhhHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999999866431 233788888999999999999998853
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=4.4e-07 Score=74.43 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=63.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-HH--HHHHHHHhhCCCceEEEEcCCchh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-VI--NYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-~l--~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
.+.|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+. .+ ..+.++.+.....++++||.++.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~----~~~~~~v~y~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l 109 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQK----QHPGKRVVYLSAE--EFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL 109 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH----HCTTS-EEEEEHH--HHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh----ccccccceeecHH--HHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh
Confidence 4689999999999999999887751 1357799999976 3332221 11 234455555457899999999865
Q ss_pred hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
- .....+ ..++..+.++ .+.|..+|++.+..
T Consensus 110 ~-----~~~~~q---~~lf~l~n~~-~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 110 A-----GKQRTQ---EELFHLFNRL-IESGKQLILTSDRP 140 (219)
T ss_dssp T-----THHHHH---HHHHHHHHHH-HHTTSEEEEEESS-
T ss_pred c-----CchHHH---HHHHHHHHHH-HhhCCeEEEEeCCC
Confidence 3 111122 2344444444 35677778777554
No 154
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=2.4e-07 Score=81.00 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=34.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++. ..+ ..+.+.|++++++.+.+||++.|-...
T Consensus 158 ~p~iLlLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 158 NPKVLLCDEATSALDP-----ATT----RSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 7899999999976643 122 256677888888889999999887643
No 155
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.60 E-value=2.9e-07 Score=74.92 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=33.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++.. . ...+...|+++.++.+.+||+++|-...
T Consensus 146 ~p~llllDEPt~~LD~~-----~----~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 146 PNPILLLDEPFSALDPL-----L----REEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred CCCEEEEcCCCccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 78999999999766331 1 2256677777777778999988887653
No 156
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.60 E-value=3.2e-07 Score=76.79 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccc--cCc-----h-----------HHH-HH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCL--GFY-----T-----------EQS-AV 127 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~--~~~-----~-----------~~~-~~ 127 (226)
+++|+++.|.|++|+|||||+.-++.... | ..|. ....+.|+..+. +.. . +.+ ..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p-~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA-P-DEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA 104 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence 78999999999999999999988776432 2 1110 112455554321 000 0 000 00
Q ss_pred HHH--HHHHHhh-------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 128 INY--LDKFVSE-------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 128 l~~--l~~~l~~-------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
++. +...+.. ..+++++++|++++.++. ..+ ..+.+.|++++++++.+||
T Consensus 105 l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~g~tii 175 (251)
T PRK09544 105 LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV-----NGQ----VALYDLIDQLRRELDCAVL 175 (251)
T ss_pred HHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHHhcCCEEE
Confidence 000 0001100 137899999999976533 112 2566777778777789999
Q ss_pred Eecccccc
Q 036464 187 EPNLATTA 194 (226)
Q Consensus 187 ~~nq~~~~ 194 (226)
++.|-...
T Consensus 176 ivsH~~~~ 183 (251)
T PRK09544 176 MVSHDLHL 183 (251)
T ss_pred EEecCHHH
Confidence 88877653
No 157
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.60 E-value=2.2e-07 Score=75.15 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=61.6
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEeccc----------cCchHHHHHHHHHHHHHhhCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGKCL----------GFYTEQSAVINYLDKFVSEHK 139 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~e~----------~~~~~~~~~l~~l~~~l~~~~ 139 (226)
+|+++.|+||+|+|||||+..++....++.... .....+-|++... ............+...+....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~ 107 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLAT 107 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhcc
Confidence 469999999999999999999985543221100 0111222222110 000001112334555555445
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-... ..+. .+...+.+...+.+.++|++.|-..
T Consensus 108 ~~~llllDEp~~gld~-----~~~~----~l~~~ll~~l~~~~~~vi~~tH~~~ 152 (202)
T cd03243 108 PRSLVLIDELGRGTST-----AEGL----AIAYAVLEHLLEKGCRTLFATHFHE 152 (202)
T ss_pred CCeEEEEecCCCCCCH-----HHHH----HHHHHHHHHHHhcCCeEEEECChHH
Confidence 7899999999865432 1222 2222322323356899999999653
No 158
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.60 E-value=5.6e-07 Score=79.41 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|+++.++.+.++|+++|-..
T Consensus 151 ~P~lLLLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 151 EPSVFLLDEPLSNLDA-----ALR----VQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 7999999999976633 222 25666777888888999888888754
No 159
>PRK08116 hypothetical protein; Validated
Probab=98.60 E-value=3.3e-07 Score=77.46 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=48.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-H-----HHHHHHHhhCCCceEEEEc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-I-----NYLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l-----~~l~~~l~~~~~~~lvVID 147 (226)
+.-+.|+|++|+|||+|+..++..+. ..+.+|+|++.. .....+.. . ....++++...++++||||
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~------~~~~~v~~~~~~--~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviD 185 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI------EKGVPVIFVNFP--QLLNRIKSTYKSSGKEDENEIIRSLVNADLLILD 185 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEHH--HHHHHHHHHHhccccccHHHHHHHhcCCCEEEEe
Confidence 33589999999999999999999886 357889999843 11111110 0 1223444444568999999
Q ss_pred CCch
Q 036464 148 SIAF 151 (226)
Q Consensus 148 sl~~ 151 (226)
++..
T Consensus 186 Dlg~ 189 (268)
T PRK08116 186 DLGA 189 (268)
T ss_pred cccC
Confidence 9974
No 160
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.60 E-value=6.9e-07 Score=70.03 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccCc----hHHHH------------HHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGFY----TEQSA------------VINY 130 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~~----~~~~~------------~l~~ 130 (226)
+++|+++.|.|++|+|||||+..++.... ++.|. ....+.|+..+.... .+.+. ..-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 78999999999999999999988876542 21110 013455554332111 11110 0111
Q ss_pred HHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 131 l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+.+.+. .+++++++|++++.++.. ... .+.+.|++ ++.++|+++|-..
T Consensus 102 laral~--~~p~~lllDEPt~~LD~~------~~~---~l~~~l~~----~~~tiiivsh~~~ 149 (166)
T cd03223 102 FARLLL--HKPKFVFLDEATSALDEE------SED---RLYQLLKE----LGITVISVGHRPS 149 (166)
T ss_pred HHHHHH--cCCCEEEEECCccccCHH------HHH---HHHHHHHH----hCCEEEEEeCChh
Confidence 222222 268999999999866432 111 23333333 3678888877643
No 161
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=3e-07 Score=76.04 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=33.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. .. ...+.+.|++++++.+.+||++.|-...
T Consensus 162 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 162 QPKLILADEPVASLDP-----AS----SRQVMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred CCCEEEEeCccccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 7899999999976633 11 2366677888887778899888887543
No 162
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.60 E-value=2.7e-07 Score=73.05 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----C---------CCeEEEEeccccCch----H--------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----L---------GGKAIYIGKCLGFYT----E-------- 123 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----~---------~~~vlyi~~e~~~~~----~-------- 123 (226)
-+++|+++.|.|++|+|||||+..++.... | ..|. . ...+.|+..+...+. +
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLK-P-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC-C-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 488999999999999999999998877643 1 1110 0 011233321110000 0
Q ss_pred -HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 124 -QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 124 -~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+...+ .+...+. .+++++++|++++-++. ..+ ..+++.|+++. + +.+||+++|-....
T Consensus 102 G~~qrv-~laral~--~~p~~lllDEP~~~LD~-----~~~----~~l~~~l~~~~-~-~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRL-ALARILL--QDAPIVLLDEPTVGLDP-----ITE----RQLLSLIFEVL-K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHH-HHHHHHh--cCCCEEEEECCcccCCH-----HHH----HHHHHHHHHHc-C-CCEEEEEecCHHHH
Confidence 00011 1222222 26899999999976533 112 25556666664 3 78888888876543
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=3.5e-07 Score=75.50 Aligned_cols=29 Identities=31% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.+|+++.|.|++|+|||||+.-++....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999999988876653
No 164
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.60 E-value=1.5e-07 Score=81.94 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------c-------C---c--hHHH-----
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------G-------F---Y--TEQS----- 125 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------~-------~---~--~~~~----- 125 (226)
-..|+..+|-|.||+|||+|++.+...+. ..++|+||++.. + + . ..|-
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~-------~~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~ 79 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLK-------DHGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELP 79 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHh-------ccCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhcc
Confidence 35799999999999999999999998885 677899999642 0 0 0 0000
Q ss_pred ---------HHHHHHHHHHh---hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 126 ---------AVINYLDKFVS---EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 126 ---------~~l~~l~~~l~---~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..++.+.++++ +.++.-+|++||+.+++.--......+ +.+..+.+.|-.+|++.++-+|++....+
T Consensus 80 ~~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~-ed~e~l~~dLv~lard~g~~LIlVsEsa~ 158 (484)
T PF07088_consen 80 LDKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEP-EDIETLTNDLVELARDMGINLILVSESAE 158 (484)
T ss_pred ccccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCc-HHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence 01334444444 345678999999877664211111112 22566777888899999999999988765
Q ss_pred c
Q 036464 194 A 194 (226)
Q Consensus 194 ~ 194 (226)
.
T Consensus 159 ~ 159 (484)
T PF07088_consen 159 N 159 (484)
T ss_pred C
Confidence 3
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.5e-07 Score=78.78 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=84.0
Q ss_pred eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe--cc-c-cC-chHHHHHHHH
Q 036464 56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--KC-L-GF-YTEQSAVINY 130 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~--~e-~-~~-~~~~~~~l~~ 130 (226)
+|-=-++|=+-+ ||.|-.=++++||||+|||.||..+|.+.- +-||- +. . .. ..|-..++..
T Consensus 169 LPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----------AtFIrvvgSElVqKYiGEGaRlVRe 235 (406)
T COG1222 169 LPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----------ATFIRVVGSELVQKYIGEGARLVRE 235 (406)
T ss_pred ccccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhccC-----------ceEEEeccHHHHHHHhccchHHHHH
Confidence 444444554444 566666699999999999999998887652 34443 21 0 01 1122246777
Q ss_pred HHHHHhhCCCceEEEEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 131 LDKFVSEHKDVKVVIIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 131 l~~~l~~~~~~~lvVIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
+-++.+++ .|.+|+||++.++-...++ ...+-++-|-+++..|.-+-..-|+-||...+--.-.++
T Consensus 236 lF~lArek-aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 236 LFELAREK-APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred HHHHHhhc-CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 77777775 8999999999987654443 233445556677777777777788888876655555554
No 166
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=7e-07 Score=78.28 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..|. ++...|+++.++.++++|++.|-..
T Consensus 154 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 154 KPKVLLFDEPLSNLDA-----NLRR----SMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred CCCEEEEcCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 6899999999976533 2232 5666777888888999999888764
No 167
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.3e-07 Score=75.57 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. .+ ..+.+.|++++++.+.+||++.|-...
T Consensus 147 ~p~lllLDEP~~gLD~~-----~~----~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 147 EQPILLLDEPFSALDPA-----LR----QEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred CCCEEEEeCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 78999999999765331 12 256667777777778888888877654
No 168
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.4e-07 Score=75.57 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. .. ...+.+.|++++++.+.+||++.|-...
T Consensus 163 ~p~lllLDEPt~~LD~-----~~----~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 163 NPRLVLADEPTGNLDA-----RN----ADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CCCEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 7899999999976633 11 2256667777776678999988887653
No 169
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.59 E-value=5.9e-07 Score=79.39 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..|. .+...|+++.++.++++|++.|-..
T Consensus 162 ~P~llLLDEP~s~LD~-----~~r~----~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 162 KPKVLLLDESLSALDY-----KLRK----QMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred CCCEEEEeCCCCcCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6899999999975532 2232 5667888888888999999888654
No 170
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=3.4e-07 Score=77.29 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=33.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+...|++++++.+.+||++.|-..
T Consensus 178 ~p~illLDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 178 DPDILLMDEAFSALDPL-----I----RREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred CCCEEEEcCCCccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 78999999999766331 1 225666777777777889988888754
No 171
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=3.3e-07 Score=75.61 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=47.1
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~ 153 (226)
....|+||||+|||+|+..++..+. ..+.++.|++.+. .. ....+.++...++++++||++..+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~------~~~~~~~y~~~~~--~~------~~~~~~~~~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYL------LNQRTAIYIPLSK--SQ------YFSPAVLENLEQQDLVCLDDLQAVI 104 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH------HcCCCeEEeeHHH--hh------hhhHHHHhhcccCCEEEEeChhhhc
Confidence 4578999999999999999999876 4567899998541 10 0112333344467999999998653
No 172
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=7.8e-07 Score=75.54 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++++|++++-++. ..+ ..+...|++++++.+.+||++.|-....
T Consensus 162 ~p~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tillvtH~~~~~ 208 (280)
T PRK13633 162 RPECIIFDEPTAMLDP-----SGR----REVVNTIKELNKKYGITIILITHYMEEA 208 (280)
T ss_pred CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence 6899999999976533 222 2566777788777899999888776543
No 173
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.59 E-value=3.2e-07 Score=74.81 Aligned_cols=28 Identities=36% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999998887643
No 174
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3e-07 Score=77.91 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999998887644
No 175
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.59 E-value=4.8e-07 Score=77.81 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhhCCCceEEEEcCCc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
+.-+.|+|++|+|||.|+..++..++ ..+.+|.|+... .+...+... ..+.+.+....+++++|||++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~------~~g~~v~~~~~~--~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG 227 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA------KKGVSSTLLHFP--EFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIG 227 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH------HcCCCEEEEEHH--HHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCC
Confidence 34588999999999999999999987 578889999743 222222111 1344556555689999999998
Q ss_pred h
Q 036464 151 F 151 (226)
Q Consensus 151 ~ 151 (226)
+
T Consensus 228 ~ 228 (306)
T PRK08939 228 A 228 (306)
T ss_pred C
Confidence 5
No 176
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.59 E-value=7.5e-07 Score=73.20 Aligned_cols=28 Identities=29% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887654
No 177
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.58 E-value=3.6e-07 Score=73.93 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998877643
No 178
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.3e-07 Score=79.61 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|+|++++.++. ..+ .++++.|+++.++++.++|+++|-..
T Consensus 172 ~P~lLilDEPts~LD~-----~~~----~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 172 DPDVVVADEPVSALDV-----SVQ----AQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999999986643 122 26777888888888999998887653
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.6e-07 Score=77.51 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=34.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. .. ...+...|++++++++.+||+++|-...
T Consensus 158 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 158 RPEIIILDESTSMLDP-----TG----RQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 6899999999976533 12 2256677788887789999988887644
No 180
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.58 E-value=3.2e-07 Score=75.92 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+.+.|++++++.+.+||++.|-..
T Consensus 171 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 171 EPEILFLDEPTIGLDVV-----A----QENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred CCCEEEEcCCCCCCCHH-----H----HHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 68999999999766331 1 225667777787777899999888765
No 181
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.8e-07 Score=77.35 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=33.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++|+|++++-++.. . ...+.+.|+++.++++.+||+++|-...
T Consensus 155 ~p~llilDEPt~gLD~~-----~----~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQ-----G----VKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 78999999999765331 1 2256677778877778999988887543
No 182
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=3.7e-07 Score=75.59 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 154 ~p~llllDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 154 EPKVLLLDEPFGALDA-----KVR----KELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999999976633 122 25666777777777889988887754
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.58 E-value=8.6e-07 Score=72.92 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=33.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. ..+ ..+.+.|++++++.+.+||+++|-...
T Consensus 149 ~p~illlDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQP-----SII----KDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred CCCEEEecCCcccCCH-----HHH----HHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 7899999999976533 122 256667777776678899888887653
No 184
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.57 E-value=4.8e-07 Score=74.35 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=34.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++++|++++-++.. . ...+.+.|++++++++.+||++.|-....
T Consensus 155 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 155 MPKVLLLDEITSALDES-----N----KHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 78999999999765331 1 23566777788877889998888876543
No 185
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.57 E-value=8.6e-07 Score=78.03 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHc-CCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKF-SLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~-~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..|. ++...|+++.+++ ++++|++.|-..
T Consensus 155 ~P~llLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 155 EPDVLLLDEPLSALDA-----NIRA----NMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred CCCEEEEcCccccCCH-----HHHH----HHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 7999999999975532 2232 5666777888887 899888887654
No 186
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.57 E-value=3.9e-07 Score=73.60 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887654
No 187
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=9.2e-07 Score=75.25 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. ..+ ..+...|++++++.|.+||++.|-..
T Consensus 159 ~p~lLilDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 159 EPKVLVLDEPTAGLDP-----MGV----SEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred CCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7899999999976633 122 25667778888778899998887754
No 188
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.57 E-value=3.8e-07 Score=75.09 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887543
No 189
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.57 E-value=3.9e-07 Score=72.82 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998776543
No 190
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.57 E-value=7.8e-07 Score=77.65 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999998887654
No 191
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=1.1e-06 Score=72.73 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=32.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|++++.+++.++|++.|-..
T Consensus 147 ~p~llllDEPt~gLD~-----~~~----~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 147 NPKILLLDEPFSALDV-----RTK----EKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred CCCEEEECCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7899999999976533 122 25667777887777889888877654
No 192
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=8.2e-07 Score=78.54 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..|. .+...|+++.++.++++|++.|-..
T Consensus 167 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 167 RPKLLLLDEPMGALDK-----KLRD----RMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 7899999999976532 2222 4556777777888999999988764
No 193
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=3.8e-07 Score=71.74 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------------cCchHHH-H---
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------GFYTEQS-A--- 126 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------~~~~~~~-~--- 126 (226)
+++|+++.|.|++|+|||||+.-++.... | . .+. ++++.+. ..+.... +
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~-~----~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD-P-T----SGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC-C-C----CCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhh
Confidence 78999999999999999999988876542 1 1 122 2333210 0000000 0
Q ss_pred -----HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 127 -----VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 127 -----~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
..-.+...+. .+++++++|++++-++. ..+ .++.+.|+++.+ +.++|++.|-....
T Consensus 98 S~G~~~rl~la~al~--~~p~llllDEP~~gLD~-----~~~----~~l~~~l~~~~~--~~tii~~sh~~~~~ 158 (171)
T cd03228 98 SGGQRQRIAIARALL--RDPPILILDEATSALDP-----ETE----ALILEALRALAK--GKTVIVIAHRLSTI 158 (171)
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEEECCCcCCCH-----HHH----HHHHHHHHHhcC--CCEEEEEecCHHHH
Confidence 0011222222 36899999999976533 122 245556666643 58888888765443
No 194
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.56 E-value=4.5e-07 Score=72.89 Aligned_cols=110 Identities=16% Similarity=0.065 Sum_probs=61.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCC------------CCCeEEEEeccccC-----chHHHHHH---
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGG------------LGGKAIYIGKCLGF-----YTEQSAVI--- 128 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~------------~~~~vlyi~~e~~~-----~~~~~~~l--- 128 (226)
-+.+|+++.|.|++|+|||||+.-++.... .|. .|. ....+.|+..+... ..+.+...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 378999999999999999999988876540 121 110 01123333322111 11111100
Q ss_pred ----------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 129 ----------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 129 ----------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
-.+...+. .+++++++|++++-++. ..+ ..+.+.|+++.+ .+.++|++.|-.
T Consensus 110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDS-----SSA----LQVMSLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHh-CCCEEEEEecCc
Confidence 01122222 26899999999976532 122 245556666654 488888888764
No 195
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.56 E-value=6.3e-07 Score=75.13 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=52.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH--HHH-HHHhhCCCceEEEE
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN--YLD-KFVSEHKDVKVVII 146 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~--~l~-~~l~~~~~~~lvVI 146 (226)
++.+.-+.++|+||+|||+|+..++..++ ..+.+|+|+..- +....+.. .+ ..+ ++.....+++|+||
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~------~~g~sv~f~~~~--el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIi 173 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL------KAGISVLFITAP--DLLSKLKAAFDEGRLEEKLLRELKKVDLLII 173 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEEEHH--HHHHHHHHHHhcCchHHHHHHHhhcCCEEEE
Confidence 34677899999999999999999999987 468899999843 22222211 11 122 22332457999999
Q ss_pred cCCchh
Q 036464 147 DSIAFH 152 (226)
Q Consensus 147 Dsl~~l 152 (226)
|++...
T Consensus 174 DDlG~~ 179 (254)
T COG1484 174 DDIGYE 179 (254)
T ss_pred ecccCc
Confidence 999853
No 196
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.56 E-value=5.6e-07 Score=72.89 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999998887643
No 197
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.56 E-value=5.2e-07 Score=74.73 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. . ...+.+.|++++++.+.+||+++|-...
T Consensus 148 ~p~llllDEP~~~LD~~-----~----~~~~~~~l~~~~~~~~~tvli~sH~~~~ 193 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAK-----V----RKELRSWLRKLHDEVHVTTVFVTHDQEE 193 (237)
T ss_pred CCCEEEEcCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 68999999999765331 1 2356667777777778999998887653
No 198
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=4.6e-07 Score=77.35 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=34.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|+++++|++++-++.. ....+...|+++++++|.|||++.|-..
T Consensus 163 ~P~llllDEPt~~LD~~---------~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPK---------GRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred CCCEEEEECCcccCCHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999999766331 1236677788888888999999888754
No 199
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.55 E-value=4.5e-07 Score=72.06 Aligned_cols=110 Identities=22% Similarity=0.249 Sum_probs=63.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----------CCCeEEEEeccc-----c---CchHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----------LGGKAIYIGKCL-----G---FYTEQS 125 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----------~~~~vlyi~~e~-----~---~~~~~~ 125 (226)
-+++|+++.|.|++|+|||||+.-++.... | +.| + ...++.|+..+. . ...+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRP-P-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 378999999999999999999988776542 2 111 0 011344443220 0 001111
Q ss_pred HHH--------H--HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 126 AVI--------N--YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 126 ~~l--------~--~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
... . .+...+ ..+++++++|++++-++. ..+ ..+.+.|+++++ .+.++|++.|-..
T Consensus 100 ~~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~~ 165 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDV-----GAK----AEIYRLIRELAD-AGKAVLLISSELD 165 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCH-----HHH----HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 110 0 111122 237899999999976633 122 255566666654 4788888888654
No 200
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.55 E-value=4.9e-07 Score=73.86 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+.-++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998776543
No 201
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=4.7e-07 Score=73.45 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998777653
No 202
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.55 E-value=4.6e-07 Score=73.29 Aligned_cols=29 Identities=34% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998777653
No 203
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.55 E-value=3.8e-07 Score=78.91 Aligned_cols=40 Identities=25% Similarity=0.142 Sum_probs=31.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++.|+++.|.||+||||||++.-+|--.. ...+-++|+.+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~-------~~~G~I~i~g~ 65 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE-------PTSGEILIDGR 65 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCE
Confidence 78999999999999999999988775442 34556777644
No 204
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=5.7e-07 Score=74.66 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. . ...+...|++++++.+.+||++.|-...
T Consensus 149 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 149 NPEVLLLDEPTSALDPT-----S----TEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 78999999999766331 1 2256667777777778899988887653
No 205
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.54 E-value=5.7e-07 Score=70.95 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=32.6
Q ss_pred eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
-++.+|++-+.+++ .-|. +++..+..++.+.+.|++++.|.-.+.
T Consensus 149 PilLLDEPFsALdP-----~LR~----eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 149 PILLLDEPFSALDP-----ALRA----EMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred CeEEecCchhhcCH-----HHHH----HHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 47888998765533 3344 556677889999999999888876543
No 206
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.54 E-value=5.4e-07 Score=73.24 Aligned_cols=28 Identities=32% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+++|+++.|.|++|+|||||+.-++..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999999877654
No 207
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=5.5e-07 Score=76.73 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|+++.++.+.|||++.|-..
T Consensus 163 ~p~illlDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 163 NPDIIVLDEPTAGLDP-----QSK----RQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred CCCEEEEECCcccCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7899999999976633 122 25666777777778999998887754
No 208
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.54 E-value=1.1e-06 Score=75.43 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887643
No 209
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.54 E-value=5.6e-07 Score=72.62 Aligned_cols=114 Identities=16% Similarity=0.039 Sum_probs=64.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----------CCCeEEEEeccccCch----HH-HH--
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----------LGGKAIYIGKCLGFYT----EQ-SA-- 126 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----------~~~~vlyi~~e~~~~~----~~-~~-- 126 (226)
-+.+|+++.|.|++|+|||||+.-++.....+++.| + ....+.|+..+...+. .+ +.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 378999999999999999999988876531111111 0 0012444432210000 00 00
Q ss_pred ---------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 127 ---------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 127 ---------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
..-.+...+. .+++++++|++++-++.. . ...+...|+++++ .+.++|+++|-....
T Consensus 102 ~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD~~-----~----~~~l~~~L~~~~~-~~~tiii~sh~~~~~ 167 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLDID-----A----LRLVAEVINKLRE-EGKSVLIITHYQRLL 167 (200)
T ss_pred cccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCCHH-----H----HHHHHHHHHHHHH-CCCEEEEEecCHHHH
Confidence 0011122222 368999999999765321 1 2255667777654 478888887766543
No 210
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=5.7e-07 Score=76.00 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999998777654
No 211
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.54 E-value=6.4e-07 Score=72.23 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998776543
No 212
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.2e-06 Score=76.90 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|++++++++.++|++.|-..
T Consensus 146 ~p~llLLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 146 APELLLMDEPLASLDL-----PRK----RELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 6899999999976533 222 25667778888888999988888654
No 213
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.53 E-value=5.3e-07 Score=72.81 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998776543
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.53 E-value=5.8e-07 Score=75.77 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=33.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++. .. ...+.+.|++++++++.+||+++|-...
T Consensus 167 ~p~lllLDEPt~~LD~-----~~----~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 167 RPKVIIADEALASLDM-----SM----RSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 7899999999976633 11 2256677778877788898888887643
No 215
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.53 E-value=6.4e-07 Score=74.23 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++.. . ...+.+.|++++++.+.+||++.|-...
T Consensus 163 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 163 QPDLILADEPIASLDPK-----T----SKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 78999999999766331 1 2256667777777778899888886643
No 216
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.8e-07 Score=73.93 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=79.1
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-----HHHHHHHHHHHH
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----QSAVINYLDKFV 135 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~-----~~~~l~~l~~~l 135 (226)
..|-+-+ ||.+-.=++++||||+|||.|+..+|.+-. ..||--...++.. -...+.++-++.
T Consensus 178 ~~ly~qi--gidpprgvllygppg~gktml~kava~~t~-----------a~firvvgsefvqkylgegprmvrdvfrla 244 (408)
T KOG0727|consen 178 ADLYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----------AAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 244 (408)
T ss_pred HHHHHHh--CCCCCcceEEeCCCCCcHHHHHHHHhhccc-----------hheeeeccHHHHHHHhccCcHHHHHHHHHH
Confidence 3444444 455555589999999999999998887653 3343311111221 224567777777
Q ss_pred hhCCCceEEEEcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 136 SEHKDVKVVIIDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 136 ~~~~~~~lvVIDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
+++ .+.+|+||++.++....++. ..+-++.+-++++.+..+-...|+-||+..+-....+.
T Consensus 245 ken-apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 245 KEN-APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred hcc-CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 776 78999999999887666552 22234445555555555666778888877666555554
No 217
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=6.9e-07 Score=74.13 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=32.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+.+.|++++++.+.+||++.|-..
T Consensus 153 ~p~llllDEPt~~LD~~-----~----~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 153 DPPLLLMDEPFGALDPI-----T----RDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred CCCEEEecCCcccCCHH-----H----HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 78999999999765331 1 225667777887777888888877654
No 218
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.52 E-value=6.8e-07 Score=73.19 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=60.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhc-cccccC------CCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFG------GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~------~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
...+.|+|+||+|||+++.+++.... +..+.. .....++-++.. ...+. ..+.+..+-....+++.|||
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~--~~~~~--~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDM--PPIQA--MVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCC--CCHHH--HHHHHHHHHhccccCCEEEE
Confidence 45699999999999999988753221 111100 011111111100 11111 12222222222346899999
Q ss_pred cCCchhhhcCc-----------CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 147 DSIAFHFRHGF-----------VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 147 Dsl~~l~~~~~-----------~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
|+++.+.+.-+ .+...-...-..+++.|+.+. +.+..||+|+|...
T Consensus 88 DsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~-~~g~nII~tAhe~~ 144 (220)
T TIGR01618 88 DNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLK-ESNKNIYATAWELT 144 (220)
T ss_pred ecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHH-hCCCcEEEEEeecc
Confidence 99998765100 011111112224555666664 49999999999964
No 219
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.52 E-value=1.3e-06 Score=73.80 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998777654
No 220
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=1.6e-06 Score=69.51 Aligned_cols=111 Identities=18% Similarity=0.074 Sum_probs=62.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----------CCCeEEEEecccc-----CchHHHHHHH-----
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----------LGGKAIYIGKCLG-----FYTEQSAVIN----- 129 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----------~~~~vlyi~~e~~-----~~~~~~~~l~----- 129 (226)
+.+|+++.|.|++|+|||||+.-++.....++..|. ....+.|+..+.. ...+.+....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 789999999999999999999888754321111110 0112333332110 0111111100
Q ss_pred --------HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 130 --------YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 130 --------~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+...+ ..+++++++|++++-++. ..+ ..+...|+++++ .+.++|++.|-..
T Consensus 110 SgGe~qrv~la~al--~~~p~vlllDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDS-----QAA----YNIVRFLKKLAD-SGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence 111112 236899999999976532 122 255666777664 5888888877643
No 221
>PRK10908 cell division protein FtsE; Provisional
Probab=98.52 E-value=1.6e-06 Score=70.93 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887543
No 222
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.52 E-value=1.3e-06 Score=76.61 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=33.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+-++. ..+. .+.+.|+++.+++++++|++.|-..
T Consensus 154 ~P~llLLDEP~s~LD~-----~~r~----~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 154 EPQILLLDEPFGALDA-----QVRK----ELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred CCCEEEEeCCCccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976533 2222 5667777888888999998887654
No 223
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.51 E-value=5.9e-07 Score=73.33 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887654
No 224
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.51 E-value=1.5e-06 Score=75.58 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=33.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|+|++++.++. ..+ .++++.|+++.++++.++|++.|-..
T Consensus 179 ~P~llilDEPts~LD~-----~~~----~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 179 EPKLIICDEPVSALDV-----SIQ----AQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7999999999976633 222 26667777887788999999887654
No 225
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.51 E-value=7.6e-07 Score=74.72 Aligned_cols=28 Identities=32% Similarity=0.320 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887653
No 226
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=1.6e-06 Score=72.41 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. ..+ ..+.+.|++++++.+.+||++.|-...
T Consensus 171 ~p~llllDEPt~~LD~-----~~~----~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 171 QPEILMLDEPAAGLNP-----KET----KELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred CCCEEEEcCCccCCCH-----HHH----HHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 7999999999976633 122 256667777777778999988887643
No 227
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=1.5e-06 Score=73.13 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=33.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. .. ...+...|++++++.+.+||+++|-..
T Consensus 165 ~p~lllLDEPt~~LD~-----~~----~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 165 DSRCLLLDEPTSALDI-----AH----QVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976533 12 225667777777777889888888654
No 228
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.51 E-value=1.7e-06 Score=69.60 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998877653
No 229
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.51 E-value=5.9e-07 Score=79.03 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++.+.++. ..+. .+...|+++.++.+.|||++.|-..
T Consensus 147 ~p~iLLlDEP~saLD~-----~~r~----~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 147 EPDILLMDEAFSALDP-----LIRD----SMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976633 2222 5666777777778999888888764
No 230
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=9e-07 Score=71.56 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 7899999999999999999998877654
No 231
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.2e-07 Score=84.27 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=87.2
Q ss_pred hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCC
Q 036464 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKD 140 (226)
Q Consensus 66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~ 140 (226)
-+|--+|+| ++|+||||||||.||..+|...-. +.+.+++. ++.|.. ..++++-...+.+ .
T Consensus 338 ~lGAKiPkG--vLL~GPPGTGKTLLAKAiAGEAgV---------PF~svSGS--EFvE~~~g~~asrvr~lf~~ar~~-a 403 (774)
T KOG0731|consen 338 ELGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV---------PFFSVSGS--EFVEMFVGVGASRVRDLFPLARKN-A 403 (774)
T ss_pred HcCCcCcCc--eEEECCCCCcHHHHHHHHhcccCC---------ceeeechH--HHHHHhcccchHHHHHHHHHhhcc-C
Confidence 445568888 889999999999999999987643 34444433 455443 3345555555554 7
Q ss_pred ceEEEEcCCchhhhcCc-----CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCCcCCcCC
Q 036464 141 VKVVIIDSIAFHFRHGF-----VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRD 206 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~-----~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~ 206 (226)
|.+|+||+|.++-+... ....+|.+-+++++-.+..+....++.|+......+..+..-..|.-.|
T Consensus 404 P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 404 PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFD 474 (774)
T ss_pred CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccc
Confidence 89999999998766542 2345788889999999998877766777766655555555444443333
No 232
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.7e-06 Score=73.70 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ .++...|++++++.+.+||++.|-..
T Consensus 162 ~P~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 162 EPKILILDEPTAGLDP-----KGR----DEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred CCCEEEEECCccCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6899999999976633 122 25667777887778999998887754
No 233
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.50 E-value=2.7e-06 Score=66.38 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=63.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhcccc------ccCCCCCeEEEEeccc-----cCchHHHHHHHHHHHHHhhCC--
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPV------EFGGLGGKAIYIGKCL-----GFYTEQSAVINYLDKFVSEHK-- 139 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~------~~~~~~~~vlyi~~e~-----~~~~~~~~~l~~l~~~l~~~~-- 139 (226)
.+.+++|+||+|+|||+++..++.....-. +..+.+..+-+.+.+. ..+..+ .....+...+...+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~-~~~~~la~~L~~~~~~ 98 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGE-KELSALALILALASLK 98 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccH-HHHHHHHHHHHhcCCC
Confidence 347999999999999999999877665311 0000122222222110 011111 22334444554432
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++..-... ..+. .+...+.++..+ +.++|++.|-..
T Consensus 99 ~~~llllDEp~~gld~-----~~~~----~l~~~l~~~~~~-~~~vii~TH~~~ 142 (162)
T cd03227 99 PRPLYILDEIDRGLDP-----RDGQ----ALAEAILEHLVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHhc-CCEEEEEcCCHH
Confidence 7899999999865432 2222 455666666666 889999888654
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.50 E-value=9.1e-07 Score=72.36 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. ..+ ..+...|+++.++.+.+||++.|-..
T Consensus 159 ~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 159 RPKLVLADEPTAALDS-----KSG----RDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred CCCEEEEeCCCCcCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 7899999999976633 122 25667777777777899999888754
No 235
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.50 E-value=1.8e-06 Score=71.25 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999999998887643
No 236
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.50 E-value=7.6e-07 Score=78.18 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. ..+ ..+...|++++++.+.+||++.|-..
T Consensus 149 ~p~lllLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 149 SPRLLLMDEPLAALDD-----PRK----YEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred CCCEEEEcCCCcCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 6899999999976633 222 25667788888888999888888654
No 237
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.49 E-value=8.8e-07 Score=71.92 Aligned_cols=29 Identities=28% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887654
No 238
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.49 E-value=2e-06 Score=69.37 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=59.8
Q ss_pred CCCC-eeEEEecCCCCChHHHHHHHHHHhcccccc----CCCCCeEEEEeccccC--chHHH--------HHHHHHHHHH
Q 036464 71 IGCR-EVTEIGGVPGIGKTQLGIQLAVNVQIPVEF----GGLGGKAIYIGKCLGF--YTEQS--------AVINYLDKFV 135 (226)
Q Consensus 71 i~~G-~i~~i~G~~GsGKT~l~~~la~~~~lp~~~----~~~~~~vlyi~~e~~~--~~~~~--------~~l~~l~~~l 135 (226)
+..| +++.|+||+|+|||||+..++....++... ......+-|++..... ..+.+ .-..++..++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~ 103 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL 103 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence 3445 589999999999999999988433221110 0011123344422100 00000 1122333333
Q ss_pred hhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHH-HHHHHHHHcCCEEEEecccc
Q 036464 136 SEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL-KLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 136 ~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~-~L~~la~~~~~~vi~~nq~~ 192 (226)
....+++++++|++.+-... ..+. .+.. .++.+ .+.+.++|+++|..
T Consensus 104 ~~~~~p~llllDEp~~glD~-----~~~~----~i~~~~l~~l-~~~~~~vi~~tH~~ 151 (200)
T cd03280 104 QHADPDSLVLLDELGSGTDP-----VEGA----ALAIAILEEL-LERGALVIATTHYG 151 (200)
T ss_pred HhCCCCcEEEEcCCCCCCCH-----HHHH----HHHHHHHHHH-HhcCCEEEEECCHH
Confidence 33457899999999965432 2222 2322 23333 34588999999864
No 239
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=6.9e-07 Score=79.55 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=33.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|+++.++.+.+||++.|-..
T Consensus 182 ~P~iLLLDEPts~LD~-----~~r----~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 182 NPDILLMDEAFSALDP-----LIR----TEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 7899999999976633 122 25666777777778999888888653
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.49 E-value=6.2e-07 Score=81.62 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+|++||.|+..+.++.. ...++++.|+++-+++|++.++++|=-..+
T Consensus 447 ~P~lli~DEp~SaLDvs---------vqa~VlnLl~~lq~e~g~t~lfISHDl~vV 493 (539)
T COG1123 447 EPKLLILDEPVSALDVS---------VQAQVLNLLKDLQEELGLTYLFISHDLAVV 493 (539)
T ss_pred CCCEEEecCCccccCHH---------HHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 69999999999876432 234788899999999999999999965433
No 241
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.49 E-value=8.2e-07 Score=77.22 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|.|++++.++. ..+ .+++..|+++.++++.++|++.|-..
T Consensus 179 ~P~llilDEPts~LD~-----~~~----~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 179 RPKLLIADEPTTALDV-----TVQ----AQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 6899999999976633 122 26677888888888999998887653
No 242
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.49 E-value=9.5e-07 Score=70.08 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=35.0
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.++.|-+.|+.+-- -+++|+++-++||+|+|||||+.-+.....
T Consensus 9 k~Y~~g~~aL~~vs~-~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 9 KAYPGGREALRDVSF-HIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred hhcCCCchhhhCceE-eecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 455666556766532 489999999999999999999987776653
No 243
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.48 E-value=9.3e-07 Score=73.21 Aligned_cols=29 Identities=31% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998888654
No 244
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.4e-06 Score=68.48 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
.+.|+++.|.|++|+||||++.-++.-.. +..++++|+.
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~-------P~~G~v~idg 63 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLI-------PDSGKVTIDG 63 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhcc-------CCCceEEEee
Confidence 68899999999999999999988776653 5567788884
No 245
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.48 E-value=1e-06 Score=72.20 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998877643
No 246
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.48 E-value=9.1e-07 Score=74.51 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. . ...+.+.|+++.++++.+||++.|-...
T Consensus 168 ~p~illLDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 168 KPKLIVLDEAVSNLDMV-----L----QAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 78999999999765331 1 2256677778877778999998887643
No 247
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.48 E-value=9.5e-07 Score=72.41 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+.+.|++++++.+.+||++.|-..
T Consensus 163 ~p~lllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 163 NPKLLIADEPTSALDV-----SVQ----AQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred CCCEEEecCCCCCCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 6899999999976532 122 25667777888777889998888654
No 248
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.47 E-value=1e-06 Score=71.56 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999998877643
No 249
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.47 E-value=1.8e-06 Score=76.90 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+..++...
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999999887654
No 250
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=8.5e-07 Score=73.19 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999999999887654
No 251
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.1e-06 Score=76.41 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=34.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|.|++++.++. ..+ .++++.|+++.++.+.++|+++|-..
T Consensus 171 ~P~llilDEPts~LD~-----~~~----~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 171 RPKLLIADEPTTALDV-----TIQ----AQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred CCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976643 122 26777888888888999998887653
No 252
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.47 E-value=1.1e-06 Score=74.05 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999998887654
No 253
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=2.2e-06 Score=72.62 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887653
No 254
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=9.4e-07 Score=74.66 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999998777543
No 255
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1e-06 Score=74.18 Aligned_cols=28 Identities=32% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999999998877654
No 256
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.46 E-value=1.1e-06 Score=80.47 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-----HHHHHHHHHHHhhCCCceEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDVKVV 144 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~~~~~~lv 144 (226)
..++| ++|+||||+|||+++..+|...- .+.++++.. .+.+. ...+..+-+.... ..+.+|
T Consensus 86 ~~~~g--iLL~GppGtGKT~la~alA~~~~---------~~~~~i~~~--~~~~~~~g~~~~~l~~~f~~a~~-~~p~Il 151 (495)
T TIGR01241 86 KIPKG--VLLVGPPGTGKTLLAKAVAGEAG---------VPFFSISGS--DFVEMFVGVGASRVRDLFEQAKK-NAPCII 151 (495)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC---------CCeeeccHH--HHHHHHhcccHHHHHHHHHHHHh-cCCCEE
Confidence 34444 89999999999999999987753 346666643 11111 1122222222223 367899
Q ss_pred EEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 145 IIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 145 VIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
+||++..+...... ....+.+.++.++..+..+....++.||.+.+....++
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 99999987654321 12334456667777776666666777776655544444
No 257
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.45 E-value=1.5e-06 Score=69.74 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887653
No 258
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.45 E-value=6.6e-07 Score=73.43 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=37.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+|+++++|++.+-+.. .+..++...++++.++.+++|+++-|-.+-+
T Consensus 167 ~P~lLLLDEPaAGln~---------~e~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 167 QPKLLLLDEPAAGLNP---------EETEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred CCCEEEecCccCCCCH---------HHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 7999999999976533 2344778888888888999999999987644
No 259
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.45 E-value=1.6e-06 Score=77.83 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=70.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c-Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G-FY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~-~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.++.-++|+||||+|||+++..++.... ...+.++... . .+ .+....+..+-...... .+.+|+|
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---------~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~-~P~ILfI 282 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN-APSIVFI 282 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---------CCEEEEecchhhhhhcchHHHHHHHHHHHHHhC-CCcEEeH
Confidence 677788899999999999999999998764 1233343221 0 01 11112233333333333 6889999
Q ss_pred cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++.++....... ...-++.+.+++..+..+....++.||++.+-...++
T Consensus 283 DEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 283 DEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD 336 (438)
T ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence 9999877543221 1122344556666666665667888887776544443
No 260
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.45 E-value=1.2e-06 Score=71.36 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887654
No 261
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.44 E-value=1.2e-06 Score=81.72 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 68999999999999999999988877653
No 262
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.3e-06 Score=74.46 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++.. .+ ..+.+.|++++++.+.+||+++|-..
T Consensus 168 ~p~lLlLDEPt~~LD~~-----~~----~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPK-----GE----EDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred CCCEEEEeCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 68999999999766431 22 25666777777777999999888654
No 263
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.44 E-value=3.7e-06 Score=69.23 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=33.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++. ..+ ..+.+.|++++++.+.+||++.|-...
T Consensus 143 ~p~vllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tiii~sH~~~~ 188 (230)
T TIGR02770 143 EPPFLIADEPTTDLDV-----VNQ----ARVLKLLRELRQLFGTGILLITHDLGV 188 (230)
T ss_pred CCCEEEEcCCccccCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 6899999999976532 122 256677777777778999998887643
No 264
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.44 E-value=2.2e-06 Score=77.57 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=31.4
Q ss_pred CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
|++.||.+=- -+.+|++..|.|++|+|||||+.-++-.+.
T Consensus 20 gV~AL~~v~l-~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 20 GVKALDGVSL-TVRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred Cceeecccee-EEeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence 4555554321 389999999999999999999988887664
No 265
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.6e-06 Score=72.22 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=32.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.|+++.+|++-..++. +...++-+.|+++.+++++++++++|=.
T Consensus 155 eP~vLLLDEPf~ALDa---------~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 155 EPKVLLLDEPFGALDA---------KVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred CCCeEeecCCchhhhH---------HHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 6899999999865533 2223555678888889999999988854
No 266
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.43 E-value=1.8e-06 Score=76.75 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.+-.-++|+||||+|||+++..++.... ...+.++.... .+ .+....+..+-+..... .+.+|+|
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~---------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-~p~Ilfi 230 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN---------ATFIRVVGSELVQKFIGEGARLVRELFELAREK-APSIIFI 230 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHhC---------CCEEEeehHHHhHhhccchHHHHHHHHHHHHhc-CCeEEEE
Confidence 455555689999999999999999988753 24555553210 00 11112233333333333 6789999
Q ss_pred cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++..+....... ...-++.+.+++..+..+....++.||.+.+....++
T Consensus 231 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 231 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred echhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 9999886443221 1122223334443333333345677776655444444
No 267
>PHA00729 NTP-binding motif containing protein
Probab=98.43 E-value=1e-06 Score=72.21 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=51.3
Q ss_pred HHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc--c-----ccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHh
Q 036464 64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ--I-----PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVS 136 (226)
Q Consensus 64 D~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~--l-----p~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~ 136 (226)
+.+-.+++. .+.|+|+||+|||++|..++..+. + +......+.+++|++.+ .++..+.....
T Consensus 10 ~~l~~~~f~---nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~--------~Ll~~L~~a~~ 78 (226)
T PHA00729 10 SAYNNNGFV---SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELP--------DALEKIQDAID 78 (226)
T ss_pred HHHhcCCeE---EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHH--------HHHHHHHHHHh
Confidence 344455663 689999999999999999988752 1 00111345678888743 13344444444
Q ss_pred hCCCceEEEEcCCchhh
Q 036464 137 EHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~ 153 (226)
...+++++|||++....
T Consensus 79 ~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 79 NDYRIPLIIFDDAGIWL 95 (226)
T ss_pred cCCCCCEEEEeCCchhh
Confidence 44457899999987544
No 268
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-06 Score=79.35 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=80.2
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--------HHHHHHHH
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--------AVINYLDK 133 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--------~~l~~l~~ 133 (226)
.+=+.+|=-.|.| ++++||||+|||.||..+|... +.=||+-. -+|.+ ..+.++-+
T Consensus 535 d~~k~lGi~~PsG--vLL~GPPGCGKTLlAKAVANEa-----------g~NFisVK---GPELlNkYVGESErAVR~vFq 598 (802)
T KOG0733|consen 535 DLFKALGIDAPSG--VLLCGPPGCGKTLLAKAVANEA-----------GANFISVK---GPELLNKYVGESERAVRQVFQ 598 (802)
T ss_pred HHHHHhCCCCCCc--eEEeCCCCccHHHHHHHHhhhc-----------cCceEeec---CHHHHHHHhhhHHHHHHHHHH
Confidence 3444553233444 8999999999999999888765 34455521 12222 12333333
Q ss_pred HHhhCCCceEEEEcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 134 FVSEHKDVKVVIIDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 134 ~l~~~~~~~lvVIDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
-.+. ..|.+|++|++.++...... ......+.+++++..|.-+-.+.|+.||....--..++..
T Consensus 599 RAR~-saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 599 RARA-SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred Hhhc-CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 3333 47999999999988754333 2344567799999999999999999999877666666654
No 269
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.43 E-value=9.4e-07 Score=73.73 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=37.7
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
++++++++|+++--++. ..+. .+.+.|+.+..++++||++|+|.-.++..
T Consensus 173 h~p~VLfLDEpTvgLDV-----~aq~----~ir~Flke~n~~~~aTVllTTH~~~di~~ 222 (325)
T COG4586 173 HPPKVLFLDEPTVGLDV-----NAQA----NIREFLKEYNEERQATVLLTTHIFDDIAT 222 (325)
T ss_pred CCCcEEEecCCccCcch-----hHHH----HHHHHHHHHHHhhCceEEEEecchhhHHH
Confidence 48999999999943322 2222 56677888999999999999998766543
No 270
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.3e-06 Score=72.15 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999998776543
No 271
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.3e-06 Score=74.01 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999998887543
No 272
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.42 E-value=9.6e-07 Score=81.35 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+||+|+|||||+.-++..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998777654
No 273
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=4.2e-06 Score=68.09 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. .. ...+.+.|++++++++.+||++.|-..
T Consensus 149 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 149 QPELLLLDEPFSALDR-----AL----RLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 7899999999976533 12 225667777887777889888888664
No 274
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=7.4e-07 Score=82.55 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=61.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCchh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
-+.|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+ ..+ ..+..+.+...++++||||++..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~----~~~g~~V~Yitae--ef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l 389 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARR----LYPGTRVRYVSSE--EFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFL 389 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeHH--HHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccc
Confidence 4789999999999999999988751 1246899999976 232222 111 122333344446899999999965
Q ss_pred hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
...+ ..+. .++..+..+ .+.+..||++.+.
T Consensus 390 ~gke-----~tqe---eLF~l~N~l-~e~gk~IIITSd~ 419 (617)
T PRK14086 390 EDKE-----STQE---EFFHTFNTL-HNANKQIVLSSDR 419 (617)
T ss_pred cCCH-----HHHH---HHHHHHHHH-HhcCCCEEEecCC
Confidence 3221 1222 344444443 3455556665554
No 275
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=2.5e-06 Score=77.20 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=61.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH----HH-HHHHHHHHhhCCCceEEEEcCCc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS----AV-INYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~----~~-l~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
-..|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+ .. .+.++++.+....++++|||+++
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~~--~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq 216 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSGD--EFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQ 216 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccc
Confidence 3789999999999999888876541 1356899999976 332222 11 12345555555578999999998
Q ss_pred hhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 151 FHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 151 ~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.+-.. ...+. .+...+..+ .+.+..+|++.+.
T Consensus 217 ~l~~k-----~~~~e---~lf~l~N~~-~~~~k~iIltsd~ 248 (450)
T PRK14087 217 FLSYK-----EKTNE---IFFTIFNNF-IENDKQLFFSSDK 248 (450)
T ss_pred cccCC-----HHHHH---HHHHHHHHH-HHcCCcEEEECCC
Confidence 65311 11222 333333333 3455566776543
No 276
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.42 E-value=2.8e-06 Score=69.79 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
...+..+.|+|++|+|||+|+..++.... ..+.+++|++.. ...+ .+....+.++||||++.
T Consensus 39 ~~~~~~~~l~G~~G~GKT~La~ai~~~~~------~~~~~~~~i~~~--~~~~----------~~~~~~~~~~liiDdi~ 100 (227)
T PRK08903 39 PVADRFFYLWGEAGSGRSHLLQALVADAS------YGGRNARYLDAA--SPLL----------AFDFDPEAELYAVDDVE 100 (227)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEEehH--HhHH----------HHhhcccCCEEEEeChh
Confidence 35567899999999999999999998875 467789999854 1111 11222357899999998
Q ss_pred hh
Q 036464 151 FH 152 (226)
Q Consensus 151 ~l 152 (226)
.+
T Consensus 101 ~l 102 (227)
T PRK08903 101 RL 102 (227)
T ss_pred hc
Confidence 54
No 277
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.42 E-value=1.7e-06 Score=72.38 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 158 ~p~lLlLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 158 EAPFIIADEPTTDLDV-----VAQ----ARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred CCCEEEEeCCCcccCH-----HHH----HHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 6899999999976532 112 25667777888778899998888654
No 278
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.5e-06 Score=74.18 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 38899999999999999999998888654
No 279
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.42 E-value=1.7e-06 Score=73.05 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+.+.|++++++++.++|++.|-..
T Consensus 169 ~p~lllLDEPt~~LD~~-----~----~~~~~~~l~~~~~~~~~tiiivsH~~~ 213 (268)
T PRK10419 169 EPKLLILDEAVSNLDLV-----L----QAGVIRLLKKLQQQFGTACLFITHDLR 213 (268)
T ss_pred CCCEEEEeCCCcccCHH-----H----HHHHHHHHHHHHHHcCcEEEEEECCHH
Confidence 78999999999765331 1 225667777887778899888887754
No 280
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=2e-06 Score=70.26 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCch
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
..+..+.|+|++|+|||+++..++.... ..+.+++|++.. +.... ....+....+.++||||++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~------~~~~~~~~i~~~--~~~~~------~~~~~~~~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE------ERGKSAIYLPLA--ELAQA------DPEVLEGLEQADLVCLDDVEA 101 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH------hcCCcEEEEeHH--HHHHh------HHHHHhhcccCCEEEEeChhh
Confidence 3466799999999999999999998765 345689999854 11111 122233233568999999986
Q ss_pred h
Q 036464 152 H 152 (226)
Q Consensus 152 l 152 (226)
+
T Consensus 102 l 102 (226)
T TIGR03420 102 I 102 (226)
T ss_pred h
Confidence 4
No 281
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.6e-06 Score=71.81 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887654
No 282
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=1.8e-06 Score=77.94 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=47.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhC-CCceEEEEcCCch
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEH-KDVKVVIIDSIAF 151 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~-~~~~lvVIDsl~~ 151 (226)
-..|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+ ..+ ..+.++.+.. .++++++||+++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi~~~--~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSE--KFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence 4899999999999999999988752 1235789999976 222221 111 1222333221 2589999999997
Q ss_pred hh
Q 036464 152 HF 153 (226)
Q Consensus 152 l~ 153 (226)
+.
T Consensus 206 l~ 207 (440)
T PRK14088 206 LI 207 (440)
T ss_pred hc
Confidence 64
No 283
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.41 E-value=1.6e-06 Score=71.62 Aligned_cols=28 Identities=32% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 7899999999999999999998887654
No 284
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=1.5e-06 Score=71.56 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998877654
No 285
>PRK13409 putative ATPase RIL; Provisional
Probab=98.41 E-value=3.2e-06 Score=78.93 Aligned_cols=112 Identities=22% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEecccc-----CchHHH--------------HH
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLG-----FYTEQS--------------AV 127 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~-----~~~~~~--------------~~ 127 (226)
.-+.+|+++.|.|++|+|||||+..++.... | +.|.- ..++.|+..+.. ...+.+ ..
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p-~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 437 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-P-DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI 437 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHH
Confidence 4579999999999999999999988876542 2 11100 013344432210 000000 00
Q ss_pred HH-----------------------HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 128 IN-----------------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 128 l~-----------------------~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
+. .+...+ ..+++++++|++++.++. ..+ ..+.+.|++++++.+.+
T Consensus 438 L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL--~~~p~llLLDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~t 506 (590)
T PRK13409 438 IKPLQLERLLDKNVKDLSGGELQRVAIAACL--SRDADLYLLDEPSAHLDV-----EQR----LAVAKAIRRIAEEREAT 506 (590)
T ss_pred HHHCCCHHHHhCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCE
Confidence 00 011111 237899999999987633 222 36677888888888888
Q ss_pred EEEeccccc
Q 036464 185 LLEPNLATT 193 (226)
Q Consensus 185 vi~~nq~~~ 193 (226)
||++.|-..
T Consensus 507 viivsHD~~ 515 (590)
T PRK13409 507 ALVVDHDIY 515 (590)
T ss_pred EEEEeCCHH
Confidence 888888643
No 286
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.40 E-value=2e-06 Score=72.12 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=33.6
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++-++.. . ...+.+.|++++++++.+||++.|-...
T Consensus 169 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tii~isH~~~~ 214 (258)
T PRK11701 169 HPRLVFMDEPTGGLDVS-----V----QARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred CCCEEEEcCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 79999999999765331 1 2256667777777779999988886643
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-06 Score=78.76 Aligned_cols=126 Identities=22% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c--cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L--GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~--~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.|-+=++|.||||+|||.||..+|.+...| .+-|++. + --+.+.-+.+..+-+-.... .|.+|+|
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vP---------f~~isApeivSGvSGESEkkiRelF~~A~~~-aPcivFi 288 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVP---------FLSISAPEIVSGVSGESEKKIRELFDQAKSN-APCIVFI 288 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCc---------eEeecchhhhcccCcccHHHHHHHHHHHhcc-CCeEEEe
Confidence 67777779999999999999999999987643 3333321 0 00111111233333333333 6899999
Q ss_pred cCCchhhhcCcCChHHH---HHHHHHHHHHHHHHHHH--cCCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464 147 DSIAFHFRHGFVDLALR---TRVLSGIALKLMNLAKK--FSLALLEPNLATTANLAESCLTCLRDSGSR 210 (226)
Q Consensus 147 Dsl~~l~~~~~~~~~~r---~~~l~~~~~~L~~la~~--~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~ 210 (226)
|+|.++-... +. +.| .+.+.+++..+..+..+ .|-.|+++.-+++ .....+.+|..|+.
T Consensus 289 DeIDAI~pkR-e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR---PDslDpaLRRaGRF 352 (802)
T KOG0733|consen 289 DEIDAITPKR-EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR---PDSLDPALRRAGRF 352 (802)
T ss_pred ecccccccch-hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC---CcccCHHHhccccc
Confidence 9999865432 21 222 22344555555555443 3566777765554 22334445555553
No 288
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.40 E-value=1.3e-06 Score=82.70 Aligned_cols=39 Identities=26% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
-+++|+.+.|+|++|||||||+.-+..-.. +..+-+++|
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-------p~~G~I~~d 533 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-------PQQGRILLD 533 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEEC
Confidence 489999999999999999999977666553 344455555
No 289
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.39 E-value=3.6e-06 Score=72.27 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999877754
No 290
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=4.1e-06 Score=68.81 Aligned_cols=29 Identities=34% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+..++...
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 37899999999999999999998887654
No 291
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.39 E-value=4.5e-06 Score=76.10 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=48.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c--CchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G--FYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~--~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|++...-++++||||+|||.++..+|...- .+.+.++... . ...+.-..+..+-+..+.. .+.+|+|
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~---------~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~-~P~IL~I 324 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQ---------LPLLRLDVGKLFGGIVGESESRMRQMIRIAEAL-SPCILWI 324 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEEhHHhcccccChHHHHHHHHHHHHHhc-CCcEEEe
Confidence 566667799999999999999999988764 2455555321 0 0111112233333334443 7899999
Q ss_pred cCCchhhh
Q 036464 147 DSIAFHFR 154 (226)
Q Consensus 147 Dsl~~l~~ 154 (226)
|++..++.
T Consensus 325 DEID~~~~ 332 (489)
T CHL00195 325 DEIDKAFS 332 (489)
T ss_pred hhhhhhhc
Confidence 99998765
No 292
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.39 E-value=2e-06 Score=71.76 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. . ...+...|++++++.+.++|++.|-..
T Consensus 164 ~p~llllDEP~~~LD~~-----~----~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPE-----L----VGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 68999999999765331 1 225667778887777899998888754
No 293
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.39 E-value=1.4e-06 Score=83.16 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999999987776653
No 294
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.39 E-value=1.3e-06 Score=83.07 Aligned_cols=29 Identities=34% Similarity=0.145 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++..+.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999999987776553
No 295
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.39 E-value=1.9e-06 Score=71.83 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.|++|+|||||+..++..
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999999887754
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.38 E-value=2.7e-06 Score=69.81 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999998887654
No 297
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=2.2e-06 Score=70.01 Aligned_cols=104 Identities=20% Similarity=0.101 Sum_probs=65.3
Q ss_pred CCCCee-EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc----c-CchHHH------HH------HHHHH
Q 036464 71 IGCREV-TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL----G-FYTEQS------AV------INYLD 132 (226)
Q Consensus 71 i~~G~i-~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~----~-~~~~~~------~~------l~~l~ 132 (226)
...|.+ ++|.|||++||||++..+|+..+-... +-.+.+|..||... + .-..|. .. ..-+.
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmm 211 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMM 211 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHH
Confidence 356777 999999999999999999999873211 12568999999532 0 000011 11 11222
Q ss_pred HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..+++ ..|.++|+|++...... ..+. -|-+.|+-++.|.|=..
T Consensus 212 maIrs-m~PEViIvDEIGt~~d~----------------~A~~-ta~~~GVkli~TaHG~~ 254 (308)
T COG3854 212 MAIRS-MSPEVIIVDEIGTEEDA----------------LAIL-TALHAGVKLITTAHGNG 254 (308)
T ss_pred HHHHh-cCCcEEEEeccccHHHH----------------HHHH-HHHhcCcEEEEeecccc
Confidence 33444 47999999999853211 1112 23468999999998653
No 298
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.38 E-value=3.6e-06 Score=76.87 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----Cc-hHHHHHHHHHHHHHh---hCCCc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----FY-TEQSAVINYLDKFVS---EHKDV 141 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----~~-~~~~~~l~~l~~~l~---~~~~~ 141 (226)
|+++..-++|+||||+|||+++..++..+..+... ..+.+..|++.... .+ .+....+..+.+... ....+
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p 290 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRP 290 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCC
Confidence 56666669999999999999999999887532100 11234555542210 11 111111222222221 12368
Q ss_pred eEEEEcCCchhhhcCcCCh--HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 142 KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~~~--~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.+|+||++.+++....... ......+.+++..|..+....++.||.+......++
T Consensus 291 ~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LD 347 (512)
T TIGR03689 291 VIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMID 347 (512)
T ss_pred ceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCC
Confidence 8999999998875432211 111233456666665554445666665443333344
No 299
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.38 E-value=2.4e-06 Score=68.98 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 38899999999999999999998887754
No 300
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=3.8e-06 Score=73.52 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------------------------
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------------------------- 118 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------------------------- 118 (226)
-|++|+++-|.|.+||||||||+-+..-.. +..+-+|.|++.
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~-------PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-------PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccC-------CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 389999999999999999999987666553 334446666431
Q ss_pred cCchH------------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHH
Q 036464 119 GFYTE------------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLS 168 (226)
Q Consensus 119 ~~~~~------------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~ 168 (226)
+.+++ |-+-+..+-.++++ -+++|+|+..+ + ++..=|.
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEe---R~Ilv~DEWAA----D-QDPaFRR---- 485 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEE---RDILVLDEWAA----D-QDPAFRR---- 485 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhh---CCeEEeehhhc----c-CChHHHH----
Confidence 00111 11112334444444 48999999985 2 2333333
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 169 GIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 169 ~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.+-+.+.-..++.|.||+.++|=-.-++
T Consensus 486 ~FY~~lLp~LK~qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 486 EFYQVLLPLLKEQGKTIFAISHDDHYFI 513 (546)
T ss_pred HHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence 4556667777889999999999765444
No 301
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.38 E-value=2e-06 Score=76.07 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. ..+ .++.+.|.++.++++.|+|++.|-..
T Consensus 182 ~P~ILLlDEPts~LD~-----~~r----~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 182 DADILLMDEPFSALDP-----LIR----TQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976643 122 25667777888788899888887654
No 302
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.37 E-value=3.6e-06 Score=77.35 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.||+|+|||||+.-++...
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998877543
No 303
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=1.6e-06 Score=78.35 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=48.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCch
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
.-..|+|++|+|||+|+..++..+. ..+.+|+|++.+ .+...+ ..+ ...+.+......+++++||+++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~------~~~~~v~yi~~~--~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~ 213 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR------ESGGKILYVRSE--LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEV 213 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH------HcCCCEEEeeHH--HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhh
Confidence 3468999999999999999998876 357899999965 222221 111 12223333334689999999986
Q ss_pred h
Q 036464 152 H 152 (226)
Q Consensus 152 l 152 (226)
+
T Consensus 214 l 214 (445)
T PRK12422 214 F 214 (445)
T ss_pred h
Confidence 4
No 304
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.37 E-value=2.8e-06 Score=71.90 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=33.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|++++++++.+||++.|-..
T Consensus 172 ~p~lllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tviiisH~~~ 216 (272)
T PRK13547 172 PPRYLLLDEPTAALDL-----AHQ----HRLLDTVRRLARDWNLGVLAIVHDPN 216 (272)
T ss_pred CCCEEEEcCccccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 6899999999976533 122 25666777777777899998888754
No 305
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.37 E-value=1.6e-06 Score=80.95 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 77999999999999999999977766553
No 306
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.8e-06 Score=73.94 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=34.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|+|++++.++. .. ..++++.|+++.+++++++|+++|-..
T Consensus 176 ~P~llilDEPts~LD~-----~~----~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 176 QPRLLIADEPTNAMEP-----TT----QAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred CCCEEEEeCCCCcCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 7999999999976633 12 236677788888788999999988753
No 307
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.36 E-value=3.4e-06 Score=69.28 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 48899999999999999999998877654
No 308
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.8e-06 Score=71.87 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887653
No 309
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.35 E-value=2.9e-06 Score=68.68 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998887654
No 310
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.35 E-value=3.3e-06 Score=70.51 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. ..+ ..+...|++++++.+.+||+++|-..
T Consensus 166 ~p~vlllDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~vsH~~~ 210 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDV-----SVQ----ARLLDLLRGLVRDLGLAVIIVTHDLG 210 (253)
T ss_pred CCCEEEEcCCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7899999999976633 122 25666777777778999999988764
No 311
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.35 E-value=2.6e-06 Score=71.28 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999999998887643
No 312
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.35 E-value=1.7e-06 Score=82.19 Aligned_cols=29 Identities=31% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++..+.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 88999999999999999999987777653
No 313
>CHL00176 ftsH cell division protein; Validated
Probab=98.35 E-value=2.6e-06 Score=79.99 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=66.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhh--CCCceEEEEcCCch
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSE--HKDVKVVIIDSIAF 151 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~--~~~~~lvVIDsl~~ 151 (226)
-++|+||||+|||+++..+|.... .+.++++.. .+.+.. .....+..++.. ...+.+|+||++..
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~---------~p~i~is~s--~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAE---------VPFFSISGS--EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---------CCeeeccHH--HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 389999999999999999987653 356677643 121111 011223333322 23678999999998
Q ss_pred hhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 152 HFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 152 l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
+.+.... ....+.+.+.+++..+..+....++.||.+.+.....+
T Consensus 287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 7643211 22345556666666666555666777776665544344
No 314
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.5e-06 Score=72.36 Aligned_cols=29 Identities=24% Similarity=0.094 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998887643
No 315
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.35 E-value=6.4e-06 Score=68.07 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998887654
No 316
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.35 E-value=2e-06 Score=75.73 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c-cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L-GF-YTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~-~~-~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.+..-++|+||||+|||+++..++..... ..+.+... . .. ..+....+..+-+.... ..+.+|+|
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~---------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~il~i 221 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---------TFIRVVGSELVRKYIGEGARLVREIFELAKE-KAPSIIFI 221 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhCCC---------CEEecchHHHHHHhhhHHHHHHHHHHHHHHh-cCCcEEEh
Confidence 5655666999999999999999999887631 22222211 0 00 01111122333333333 36789999
Q ss_pred cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++..+....... ....+..+.+++..+..+....++.||++.+....++
T Consensus 222 DEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 222 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 9999876432211 1122233333443333333345777777666544443
No 317
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.35 E-value=8.4e-06 Score=68.57 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLA 95 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la 95 (226)
.||.|.++.|+|.+|||||||+..+.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHH
Confidence 48999999999999999999998774
No 318
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.35 E-value=2.1e-06 Score=81.89 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++..+.
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999987776553
No 319
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.34 E-value=3.1e-06 Score=70.48 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999998877543
No 320
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.34 E-value=3.5e-06 Score=68.99 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998877653
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.34 E-value=2.2e-06 Score=78.99 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=26.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+++|+.+.|+|++|+|||||+.-++....
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999999988876553
No 322
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.34 E-value=1.5e-06 Score=77.68 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=47.8
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
.....|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+ ..+ ..+..+.....++++|+||+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~----~~~~~~v~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE----NNPNAKVVYVSSE--KFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 209 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH----hCCCCcEEEEEHH--HHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhh
Confidence 345789999999999999999888751 1236789999865 222211 000 1122232222357999999999
Q ss_pred hhh
Q 036464 151 FHF 153 (226)
Q Consensus 151 ~l~ 153 (226)
.+.
T Consensus 210 ~l~ 212 (405)
T TIGR00362 210 FLA 212 (405)
T ss_pred hhc
Confidence 653
No 323
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=3e-06 Score=72.26 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998887643
No 324
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.33 E-value=3.3e-06 Score=69.93 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998888654
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.33 E-value=2.7e-06 Score=78.98 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+||+|+|||||+.-++....
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999999988876553
No 326
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.33 E-value=2.4e-06 Score=79.77 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++.-..
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 78999999999999999999988776553
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.33 E-value=2.7e-06 Score=78.86 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+.-++...
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998777654
No 328
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.33 E-value=2.9e-06 Score=69.21 Aligned_cols=28 Identities=36% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 7899999999999999999998887653
No 329
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.33 E-value=3.8e-06 Score=68.90 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 7899999999999999999998877653
No 330
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.33 E-value=3.1e-06 Score=78.74 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|.|++|+|||||+.-++....
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 88999999999999999999998887654
No 331
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=3.6e-06 Score=68.32 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++| ++.|.|++|+|||||+.-++...
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 6788 99999999999999998887643
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.32 E-value=3.1e-06 Score=74.26 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|++|++|++++.++. ....+++..|+.+-+++|.+-++++|=-+
T Consensus 444 kP~~i~LDEPTSALD~---------SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 444 KPELILLDEPTSALDR---------SVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred CCcEEEecCCchHhhH---------HHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 6899999999976633 12347888999999999999999998644
No 333
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.32 E-value=8e-06 Score=66.67 Aligned_cols=28 Identities=36% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999998887653
No 334
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=2.6e-06 Score=69.98 Aligned_cols=28 Identities=32% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|.|++|+|||||+.-++..+
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 7899999999999999999997666544
No 335
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.32 E-value=4.4e-06 Score=70.18 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++.. ....+.+.|++++++.+.+||++.|-..
T Consensus 170 ~p~llllDEPt~~LD~~---------~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 170 QAKVILADEPIASLDPE---------SARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CCCEEEecCccccCCHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 78999999999766331 1235667788887777888888877664
No 336
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=3.7e-06 Score=70.33 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999998887643
No 337
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.31 E-value=7e-06 Score=77.27 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=34.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|+|++++.++. ..+ .++++.|++++++++.+||+++|-..
T Consensus 481 ~p~llllDEPts~LD~-----~~~----~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 481 NPKVIIADEAVSALDV-----SIR----GQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 7999999999976633 222 36677788888888999999988653
No 338
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.31 E-value=2.5e-06 Score=77.18 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=47.9
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCch
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
.-+.|+|++|+|||+|+..++..+.. ...+.+|+|++.+ .+...+ ..+ .....+.+...++++|+||+++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~----~~~~~~v~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE----KNPNAKVVYVTSE--KFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQF 222 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhh
Confidence 45789999999999999999988752 1236789999875 222211 111 11223333333689999999996
Q ss_pred h
Q 036464 152 H 152 (226)
Q Consensus 152 l 152 (226)
+
T Consensus 223 l 223 (450)
T PRK00149 223 L 223 (450)
T ss_pred h
Confidence 5
No 339
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=9e-06 Score=69.98 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999998887653
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.30 E-value=9.1e-06 Score=68.18 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=28.2
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.|+.+- =+.+|+++.|.|++|+|||||+.-++...
T Consensus 16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 16 KLHRLP--VPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred hhhcCC--CCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 445443 27899999999999999999998777664
No 341
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.30 E-value=7e-06 Score=78.64 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|++++.-++|+||||+|||+++..++...- ...++++... ..+ .+....+..+-+.... ..+.+|+|
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~~---------~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~-~~p~il~i 277 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAG---------AYFISINGPEIMSKYYGESEERLREIFKEAEE-NAPSIIFI 277 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC---------CeEEEEecHHHhcccccHHHHHHHHHHHHHHh-cCCcEEEe
Confidence 688888899999999999999999887653 3466666431 011 1111122333333333 36789999
Q ss_pred cCCchhhhcCcCChH-HHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 147 DSIAFHFRHGFVDLA-LRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 147 Dsl~~l~~~~~~~~~-~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
|++..+......... .....+..++..+..+..+.++.||.+.+
T Consensus 278 DEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 278 DEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred ehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 999977643211111 11223445555555554445566663433
No 342
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.30 E-value=3.4e-06 Score=78.49 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+.-++...
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998877655
No 343
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.29 E-value=4e-06 Score=77.89 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 78999999999999999999988887663
No 344
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.29 E-value=3.5e-06 Score=80.18 Aligned_cols=29 Identities=31% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999999988877653
No 345
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=5.4e-06 Score=68.75 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887653
No 346
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.28 E-value=2.1e-05 Score=64.20 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=61.1
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhcccccc---CCCCCeEEEEecccc-----Cc-----hHHHHHHHHHHHHHhhCCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---GGLGGKAIYIGKCLG-----FY-----TEQSAVINYLDKFVSEHKD 140 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---~~~~~~vlyi~~e~~-----~~-----~~~~~~l~~l~~~l~~~~~ 140 (226)
++++.|+||+|+|||+|+.+++....++... -....++-|++.... +. ..-...+..+...+....+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999998654321100 011234445543210 00 0111223444444444457
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHH--cCCEEEEeccccc
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK--FSLALLEPNLATT 193 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq~~~ 193 (226)
..++++|++..-... .+.... +...+++++++ .+.++|++.|-..
T Consensus 109 ~slvllDE~~~gtd~-----~~~~~~---~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 109 RSLVLIDEFGKGTDT-----EDGAGL---LIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CcEEEeccccCCCCH-----HHHHHH---HHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 899999999864421 122222 22345555543 2457777777653
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.28 E-value=1.4e-05 Score=62.85 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=31.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++.+.|+||+|||+++..++.... ..+.+|++++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~------~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK------KKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEEcCC
Confidence 678999999999999999998876 4577899999764
No 348
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.28 E-value=3.7e-06 Score=78.50 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+.-++...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998777665
No 349
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.28 E-value=3.4e-06 Score=78.82 Aligned_cols=28 Identities=29% Similarity=0.200 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+.-++...
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 7899999999999999999998777654
No 350
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.28 E-value=6.9e-06 Score=67.37 Aligned_cols=29 Identities=31% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999999999887765
No 351
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.27 E-value=3.5e-06 Score=78.52 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999999988877653
No 352
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=3.5e-06 Score=78.95 Aligned_cols=31 Identities=35% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
|=+++|+++.|-||+|+|||||+-.++....
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~ 81 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLN 81 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhcccc
Confidence 5689999999999999999999998887765
No 353
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.27 E-value=4.5e-06 Score=76.32 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998887654
No 354
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.27 E-value=1.4e-05 Score=65.62 Aligned_cols=115 Identities=11% Similarity=-0.045 Sum_probs=67.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEec---cc--cCch-----HHHHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGK---CL--GFYT-----EQSAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~---e~--~~~~-----~~~~~l~~l~~~l~~ 137 (226)
+..|+++.|.||+|+|||+++..++....++.... ...-++-|++. .+ .+.. .-...+.++...++.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~ 107 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSN 107 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHh
Confidence 56789999999999999999999988665432100 01112222221 00 0111 111335667777776
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..+..++++|++..-... .+..... ...++.+.+..+.++|++.|-..
T Consensus 108 ~~~~sLvllDE~~~gT~~-----~d~~~i~---~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 108 CTSRSLVILDELGRGTST-----HDGIAIA---YATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred CCCCeEEEEccCCCCCCh-----hhHHHHH---HHHHHHHHhccCCeEEEEcccHH
Confidence 667899999999643221 1122112 23444555546888888888754
No 355
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.27 E-value=1.4e-05 Score=66.87 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998777654
No 356
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.27 E-value=8.6e-06 Score=78.03 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=72.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GF-YTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~-~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++..-++|+||||+|||+++..+|.... .+.+.++... .. ..+.-..+..+-+..... .+.+|+|
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~~---------~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~-~p~iifi 552 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATESG---------ANFIAVRGPEILSKWVGESEKAIREIFRKARQA-APAIIFF 552 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 455555689999999999999999998753 3455555321 00 111112233443334343 6899999
Q ss_pred cCCchhhhcCcC--ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 147 DSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 147 Dsl~~l~~~~~~--~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
|++.++...... ......+.+.+++..+..+....++.||.+.+....++.
T Consensus 553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 999987753221 111223456667777776666678888877665554543
No 357
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.26 E-value=8e-06 Score=75.04 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999999998777554
No 358
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.26 E-value=8e-06 Score=66.28 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=61.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccc-------cccCCCC-CeEEEEeccccCchHH-----HHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIP-------VEFGGLG-GKAIYIGKCLGFYTEQ-----SAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp-------~~~~~~~-~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~ 137 (226)
...|+++.|.||+|+|||+++..++..+.+- ....... ..-+|......+..+. ..-+.++...+..
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~ 105 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDY 105 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHh
Confidence 5678999999999999999998887555431 1111000 0112221111111110 0112334444444
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..+++++++|++..-.. ..++...... .++.+. +.+.++|++.|...
T Consensus 106 ~~~~~lvllDE~~~gt~-----~~~~~~l~~~---il~~l~-~~~~~~i~~TH~~~ 152 (204)
T cd03282 106 ADGDSLVLIDELGRGTS-----SADGFAISLA---ILECLI-KKESTVFFATHFRD 152 (204)
T ss_pred cCCCcEEEeccccCCCC-----HHHHHHHHHH---HHHHHH-hcCCEEEEECChHH
Confidence 44689999999975332 1122222222 333443 45999999999664
No 359
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.26 E-value=4.8e-06 Score=77.09 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=26.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-++....
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999999988877653
No 360
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=1.1e-05 Score=69.99 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887643
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=1.4e-05 Score=71.25 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHH--------------HHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQS--------------AVINYLDKF 134 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~--------------~~l~~l~~~ 134 (226)
..++.++.++||+|+||||++.++|..... ..+.+|.+++++.+.. .+|+ .....+.+.
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~-----~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~ 294 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFL-----HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKET 294 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHH
Confidence 456789999999999999999999986532 3577899998764221 1121 112334444
Q ss_pred HhhCCCceEEEEcCCch
Q 036464 135 VSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~ 151 (226)
+.. .+.++|+||+...
T Consensus 295 l~~-~~~D~VLIDTaGr 310 (432)
T PRK12724 295 LAR-DGSELILIDTAGY 310 (432)
T ss_pred HHh-CCCCEEEEeCCCC
Confidence 443 4789999999653
No 362
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.25 E-value=7.1e-06 Score=67.93 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+++|+++.|.|++|+|||||+.-++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999999888765
No 363
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.3e-05 Score=69.86 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=67.4
Q ss_pred chHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 38 ~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+...|-+++++. ..+|--+|+ .+.|+..|=.-++++||||+|||.||..+|..+. +-||+-.
T Consensus 216 gl~~AK~lL~EA----VvlPi~mPe---~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFFNVS 277 (491)
T KOG0738|consen 216 GLHEAKKLLKEA----VVLPIWMPE---FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFFNVS 277 (491)
T ss_pred chHHHHHHHHHH----HhhhhhhHH---HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEEEec
Confidence 456777888876 223333333 4668888888899999999999999999998873 5666522
Q ss_pred c-----cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhc
Q 036464 118 L-----GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155 (226)
Q Consensus 118 ~-----~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~ 155 (226)
. .-..+.-.++.-|-++...+ .|..|+||+|.++-..
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfy-APStIFiDEIDslcs~ 319 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSQ 319 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHh-CCceeehhhHHHHHhc
Confidence 1 00112223455555555554 7899999999988754
No 364
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.25 E-value=6.6e-06 Score=69.80 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 7899999999999999999999887765
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.25 E-value=2.1e-05 Score=63.48 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=31.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
.++.++||+|+||||.+-.+|..... .+.+|..|+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~------~~~~v~lis~D~ 39 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL------KGKKVALISADT 39 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEEST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh------ccccceeecCCC
Confidence 47899999999999999999999873 488999999764
No 366
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.25 E-value=5.6e-06 Score=76.21 Aligned_cols=46 Identities=7% Similarity=-0.040 Sum_probs=35.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++.. . ...++..|++++++++.+||++.|-...
T Consensus 186 ~p~lllLDEPt~~LD~~-----~----~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 186 EPFLFLADEPTGTLDPQ-----T----AKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred CCCEEEeeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 79999999999876432 1 2356677888888889999999887653
No 367
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.25 E-value=1.7e-05 Score=63.22 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=59.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEecc-----ccCchH----HH-HHHHHHHHHHhhCCCce
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGKC-----LGFYTE----QS-AVINYLDKFVSEHKDVK 142 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~e-----~~~~~~----~~-~~l~~l~~~l~~~~~~~ 142 (226)
++.|+|++|+|||+++.+++....+..... ....++-|++.- ..+... .+ .-..++...+....+++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 367999999999999999986664321100 011222222210 001111 01 12334555555545789
Q ss_pred EEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 143 lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++++|++.+-... ..+..... ..++.+.++.+.++|++.|...
T Consensus 81 llllDEp~~g~d~-----~~~~~~~~---~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 81 LVLLDELGRGTST-----YDGVAIAA---AVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEEEecCCCCCCH-----HHHHHHHH---HHHHHHHhcCCCeEEEEecHHH
Confidence 9999999865432 22222222 2334444445888888888763
No 368
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.25 E-value=1.1e-05 Score=66.09 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=59.3
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhcccccc---CCCCCeEEEEeccc--cCchHH--------HHHHHHHHHHHhhCCCc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---GGLGGKAIYIGKCL--GFYTEQ--------SAVINYLDKFVSEHKDV 141 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---~~~~~~vlyi~~e~--~~~~~~--------~~~l~~l~~~l~~~~~~ 141 (226)
+++.|+||+|+|||+++..++....+.... .....++-|++.-. ....+. ...+..+..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999997655432100 00112333333100 001111 12234556666655578
Q ss_pred eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.++++|++..-... .+...... ..++.+.+..++++|+++|..
T Consensus 111 ~llllDEp~~gt~~-----lD~~~~~~---~il~~l~~~~~~~vi~~TH~~ 153 (216)
T cd03284 111 SLVLLDEIGRGTST-----YDGLSIAW---AIVEYLHEKIGAKTLFATHYH 153 (216)
T ss_pred eEEEEecCCCCCCh-----HHHHHHHH---HHHHHHHhccCCcEEEEeCcH
Confidence 99999999321111 01111112 233334444488889888874
No 369
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.24 E-value=1.9e-05 Score=69.03 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c--cCchHHHHHHH----HHHHHHhhCCCc
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L--GFYTEQSAVIN----YLDKFVSEHKDV 141 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~--~~~~~~~~~l~----~l~~~l~~~~~~ 141 (226)
.|+++-.++.|+||||+|||.+|..+|..+- ...+.++.- + ....|.-..+. ...+.++...++
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg---------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG---------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC---------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 5688889999999999999999999998863 345666632 1 11122222232 233333234579
Q ss_pred eEEEEcCCchhhhc
Q 036464 142 KVVIIDSIAFHFRH 155 (226)
Q Consensus 142 ~lvVIDsl~~l~~~ 155 (226)
.+|+||+|.++...
T Consensus 214 cVLFIDEIDA~~g~ 227 (413)
T PLN00020 214 SCLFINDLDAGAGR 227 (413)
T ss_pred eEEEEehhhhcCCC
Confidence 99999999987754
No 370
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.24 E-value=1.1e-05 Score=73.96 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.||+|+|||||+.-++...
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998777654
No 371
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.24 E-value=1.1e-05 Score=73.65 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998887643
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.23 E-value=7.3e-05 Score=66.95 Aligned_cols=39 Identities=28% Similarity=0.226 Sum_probs=33.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
..++.++|++|+||||++..+|..+. ..+.+|+.+++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~------~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ------RKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEcCcc
Confidence 46899999999999999999998775 4577999998764
No 373
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.23 E-value=8.8e-06 Score=77.71 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+||||++.-++....
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 78999999999999999999988877654
No 374
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.22 E-value=6.6e-06 Score=70.06 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=50.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFY--TEQSAV--------------INYLDKF 134 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~ 134 (226)
+.+.++.|+||+|+||||++..++..+.. .. +.+|.+|+.+.+.. .+++.. -..+.+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~-----~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVL-----EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----HcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHH
Confidence 46789999999999999999999988762 11 37999999774321 122211 1234455
Q ss_pred HhhCCCceEEEEcCC
Q 036464 135 VSEHKDVKVVIIDSI 149 (226)
Q Consensus 135 l~~~~~~~lvVIDsl 149 (226)
+....+.++|+||..
T Consensus 267 l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRLRDKDLILIDTA 281 (282)
T ss_pred HHHccCCCEEEEeCC
Confidence 555456788888875
No 375
>PRK10867 signal recognition particle protein; Provisional
Probab=98.22 E-value=7.3e-05 Score=67.21 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=50.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCch--HHHH---------------------HHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYT--EQSA---------------------VIN 129 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~--~~~~---------------------~l~ 129 (226)
..++.++|++|+||||++..+|..+. .. +.+|+.+++..+... +|+. ...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~------~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK------KKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------HhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 47999999999999999999999876 35 789999997753321 1221 111
Q ss_pred HHHHHHhhCCCceEEEEcCCchh
Q 036464 130 YLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 130 ~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
...+.... .++++||||....+
T Consensus 174 ~a~~~a~~-~~~DvVIIDTaGrl 195 (433)
T PRK10867 174 AALEEAKE-NGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHh-cCCCEEEEeCCCCc
Confidence 12222222 36899999999854
No 376
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=5.8e-06 Score=72.79 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=53.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCC-CeEEEEeccccC--chHHHHH--------------HHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG-GKAIYIGKCLGF--YTEQSAV--------------INYLDK 133 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~-~~vlyi~~e~~~--~~~~~~~--------------l~~l~~ 133 (226)
+..|.++.|+||+|+||||++..++..... ..+ .+|.+|+++.+. -.+|+.. -..+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~-----~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~ 208 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVM-----RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL 208 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence 577899999999999999999999988652 233 588999876432 1233321 123444
Q ss_pred HHhhCCCceEEEEcCCch
Q 036464 134 FVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 134 ~l~~~~~~~lvVIDsl~~ 151 (226)
.+.+..+.++|+||....
T Consensus 209 ~l~~l~~~DlVLIDTaG~ 226 (374)
T PRK14722 209 ALAELRNKHMVLIDTIGM 226 (374)
T ss_pred HHHHhcCCCEEEEcCCCC
Confidence 555555789999999984
No 377
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.21 E-value=1.2e-05 Score=65.62 Aligned_cols=28 Identities=29% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998887664
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.21 E-value=3.2e-05 Score=66.96 Aligned_cols=41 Identities=27% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++|.++.++||||+||||++..+|..+. ..+++|+.++...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~------~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK------AQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCeEEEEecCc
Confidence 4689999999999999999999999876 3577899998654
No 379
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=8.5e-06 Score=75.91 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-++||+++.++||+|+||||++.=+.+-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999996554444
No 380
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.20 E-value=1e-05 Score=66.52 Aligned_cols=111 Identities=13% Similarity=-0.038 Sum_probs=58.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEe-----ccccCc-----hHHHHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIG-----KCLGFY-----TEQSAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~-----~e~~~~-----~~~~~~l~~l~~~l~~ 137 (226)
.+.++++.|+||+|+|||+++.+++....+-.... .....+-.++ ....+. ..-......+...+..
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~ 106 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKS 106 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHh
Confidence 45789999999999999999999886654311000 0000110111 000000 0011123344444543
Q ss_pred CCCceEEEEcCC---chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 138 HKDVKVVIIDSI---AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 138 ~~~~~lvVIDsl---~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
..++++|++|++ ++..+. .... ...++.+.++.+.++|++.|..
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~--------~~~~---~~il~~l~~~~~~~vlisTH~~ 153 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDG--------FGLA---WAIAEYIATQIKCFCLFATHFH 153 (222)
T ss_pred CCCCeEEEEecCcCCCChHHH--------HHHH---HHHHHHHHhcCCCeEEEEechH
Confidence 346899999999 433221 1111 1222444445688999999964
No 381
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.20 E-value=7e-06 Score=75.08 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999998877643
No 382
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.20 E-value=8.5e-06 Score=71.55 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.+|+++|-|++++.++.. ...+++..|+.+-+++|.+++++.|=
T Consensus 174 n~P~lLIADEPTTALDVt---------vQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 174 NEPDLLIADEPTTALDVT---------VQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred CCCCeEeecCCcchhhhh---------hHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 379999999999877442 22378889999999999999999884
No 383
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.2e-05 Score=66.93 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999888754
No 384
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.19 E-value=2.9e-05 Score=61.43 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=34.9
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.|+++.+|++++.+++ ..+.++++.++.+|.+-..-|++|+.+.
T Consensus 170 eP~vmLFDEPTSALDP---------ElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 170 EPEVMLFDEPTSALDP---------ELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred CCceEeecCCcccCCH---------HHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 6899999999987754 3466889999999988777777776653
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.19 E-value=0.00014 Score=65.50 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=50.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHH------------------HHHHH
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAV------------------INYLD 132 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~------------------l~~l~ 132 (226)
+..++.++|++|+||||++..+|..+. ..+.+|++++...+.. .+|+.. ...+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~------~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~ 167 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK------KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAK 167 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 357899999999999999999998775 4577999998764322 222211 12233
Q ss_pred HHHhhCCCceEEEEcCCchh
Q 036464 133 KFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 133 ~~l~~~~~~~lvVIDsl~~l 152 (226)
+.++.....++||||....+
T Consensus 168 ~al~~~~~~DvVIIDTAGr~ 187 (437)
T PRK00771 168 EGLEKFKKADVIIVDTAGRH 187 (437)
T ss_pred HHHHHhhcCCEEEEECCCcc
Confidence 44443334599999999754
No 386
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.7e-05 Score=72.78 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999998877643
No 387
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.18 E-value=2e-05 Score=70.79 Aligned_cols=75 Identities=24% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIGKCLGFY--TEQSAV--------------INYLDKF 134 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~ 134 (226)
..|.++.|+||+|+||||++..+|..+. . ..+.+|.+|++..+.. .+++.. ...+...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~-----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALL-----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHH
Confidence 3477999999999999999999998775 2 3467999999764221 122211 1344455
Q ss_pred HhhCCCceEEEEcCCch
Q 036464 135 VSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~ 151 (226)
+.+..+.++|+||....
T Consensus 294 l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 55555789999999974
No 388
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.17 E-value=1.5e-05 Score=65.62 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=20.3
Q ss_pred CCCCeeEEEecCCCCChHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLG 91 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~ 91 (226)
+++|+++.|+|++|+|||||+
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 899999999999999999997
No 389
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.17 E-value=1.3e-05 Score=66.66 Aligned_cols=29 Identities=34% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999999998877753
No 390
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1e-05 Score=76.08 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=34.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++|+|++++.++.. .+ .+++..|+++++++|.+||++.|-..
T Consensus 186 ~P~lLllDEPt~~LD~~-----~~----~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 186 RPAVLIADEPTTALDVT-----IQ----AQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred CCCEEEEeCCCCccCHH-----HH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 79999999999876431 22 25667778888888999999988653
No 391
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.17 E-value=1.1e-05 Score=67.68 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 7899999999999999999998887754
No 392
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.3e-05 Score=67.28 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=36.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
.|+++.+|++-+-++. +.+ .+++--|.++.++.+++++.++|....+
T Consensus 146 ~P~LLLmDEPLaSLD~-----~RK----~EilpylERL~~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 146 APELLLMDEPLASLDL-----PRK----REILPYLERLRDEINIPILYVSHSLDEV 192 (352)
T ss_pred CCCeeeecCchhhccc-----chh----hHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence 6899999999754422 222 2677788999999999999999987543
No 393
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.17 E-value=1.6e-05 Score=75.01 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-----HHHHHHHHHHHhhCCCc
Q 036464 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDV 141 (226)
Q Consensus 67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~~~~~ 141 (226)
+++-+++| +.|+||||+|||+++..++...- .+.++++.. ++.+. ...+..+-..... ..+
T Consensus 180 ~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~---------~~f~~is~~--~~~~~~~g~~~~~~~~~f~~a~~-~~P 245 (644)
T PRK10733 180 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGS--DFVEMFVGVGASRVRDMFEQAKK-AAP 245 (644)
T ss_pred cCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC---------CCEEEEehH--HhHHhhhcccHHHHHHHHHHHHh-cCC
Confidence 34456667 89999999999999999987753 345666643 11111 1112222222233 367
Q ss_pred eEEEEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 142 KVVIIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 142 ~lvVIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
.+|+||++.++...... ....+.+.+++++..+..+....++.||.+......++.
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999987643211 223455667777777777666667777755554444443
No 394
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.5e-05 Score=72.93 Aligned_cols=118 Identities=17% Similarity=0.116 Sum_probs=75.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++...++++||||+|||.++..++...- .+.+-++.... -..+.-..+..+-....+ ..+.+|+|
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~---------~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~-~~p~iiFi 341 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR---------SRFISVKGSELLSKWVGESEKNIRELFEKARK-LAPSIIFI 341 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCC---------CeEEEeeCHHHhccccchHHHHHHHHHHHHHc-CCCcEEEE
Confidence 678888899999999999999999998542 23444442210 011112233334333333 37899999
Q ss_pred cCCchhhhcCcCCh-HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 147 DSIAFHFRHGFVDL-ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 147 Dsl~~l~~~~~~~~-~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
|++.+++....... ....+.+++++..+..+-...++.||.+.+.-...++
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence 99998886543321 1123566777777776677778887776666555554
No 395
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.3e-05 Score=75.06 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=72.0
Q ss_pred hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--------HHHHHHHHHHhh
Q 036464 66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--------AVINYLDKFVSE 137 (226)
Q Consensus 66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--------~~l~~l~~~l~~ 137 (226)
+++-|+++.+=++++||||+|||.+|..+|.++.+ -|++-. -+|.+ +.+..+-+-.++
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----------~FlSVK---GPELLNMYVGqSE~NVR~VFerAR~ 762 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----------NFLSVK---GPELLNMYVGQSEENVREVFERARS 762 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhcee-----------eEEeec---CHHHHHHHhcchHHHHHHHHHHhhc
Confidence 45678998888999999999999999999999863 445421 12221 123333333333
Q ss_pred CCCceEEEEcCCchhhhcCcC-----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~-----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
. .|.+|++|++.++....-. ... .+.+.+++..|..+.+...--|+++.-++
T Consensus 763 A-~PCVIFFDELDSlAP~RG~sGDSGGVM--DRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 763 A-APCVIFFDELDSLAPNRGRSGDSGGVM--DRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred c-CCeEEEeccccccCccCCCCCCccccH--HHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 3 7999999999987654321 222 34577888888888864444444444333
No 396
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2.5e-05 Score=63.18 Aligned_cols=39 Identities=28% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+++|++..|.||+|+|||||+..++-... -..++|.|..
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~------p~~G~v~~~g 62 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELS------PDSGEVTLNG 62 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccC------CCCCeEeeCC
Confidence 89999999999999999999999998875 2345666654
No 397
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.4e-05 Score=66.61 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999999998877654
No 398
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.16 E-value=1.6e-05 Score=66.77 Aligned_cols=29 Identities=31% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+++.|.|++|+|||||+..++....
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 88999999999999999999988886643
No 399
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.15 E-value=1.3e-05 Score=65.44 Aligned_cols=28 Identities=36% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999998877553
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=3.2e-05 Score=68.08 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAV--------------INYLDKF 134 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~ 134 (226)
+.+|.++.|+||+|+||||++..+|.... ..+.+|.+|++..+.. .+|+.. -..+.+.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~------~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLL------KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 56799999999999999999999998765 3577899999764332 233311 1223333
Q ss_pred Hhh---CCCceEEEEcCCchh
Q 036464 135 VSE---HKDVKVVIIDSIAFH 152 (226)
Q Consensus 135 l~~---~~~~~lvVIDsl~~l 152 (226)
+.. ..+.++|+||.....
T Consensus 277 l~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHhcCCCCEEEEECCCCC
Confidence 322 136899999999854
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.15 E-value=1e-05 Score=75.33 Aligned_cols=29 Identities=31% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+||+|+||||++.-+..-.-
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 89999999999999999999987776653
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.9e-05 Score=70.95 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=54.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH--------------HHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA--------------VINYLDKF 134 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~--------------~l~~l~~~ 134 (226)
+..|.++.|+|++|+||||++..++..+... +.+.+|.+++...+.. .+++. ....+.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH
Confidence 5679999999999999999999999877521 2246898988653221 12221 12345556
Q ss_pred HhhCCCceEEEEcCCch
Q 036464 135 VSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~ 151 (226)
+++..+.++||||....
T Consensus 423 L~~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 423 LERLRDYKLVLIDTAGM 439 (559)
T ss_pred HHHhccCCEEEecCCCc
Confidence 65555789999999984
No 403
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.15 E-value=4.3e-05 Score=64.43 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=26.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+++|+++.|.|++|+|||||+.-++....
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999999998887653
No 404
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=2.2e-05 Score=72.03 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887644
No 405
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.15 E-value=2.8e-05 Score=71.84 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=33.8
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. .. ...+.+.|++++++++.+||++.|-..
T Consensus 174 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 174 RPELLIADEPTTALDV-----SV----QAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred CCCEEEEcCCCCccCH-----HH----HHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 7999999999986643 12 235667777887777899988888754
No 406
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.14 E-value=1.3e-05 Score=72.01 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+...|.||+|+|||||+.-+....
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHccc
Confidence 7899999999999999999998776554
No 407
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.8e-05 Score=66.07 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999999998887654
No 408
>PLN03130 ABC transporter C family member; Provisional
Probab=98.14 E-value=7.6e-06 Score=84.26 Aligned_cols=40 Identities=30% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
-+++|+.+.|+|++|+|||||+.-+.+-+- ...+-++||+
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-------p~~G~I~IDG 1300 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVE-------LERGRILIDG 1300 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-------CCCceEEECC
Confidence 389999999999999999999988877653 3344566663
No 409
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=1.9e-05 Score=61.99 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=33.5
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
..|++++-|+++.-++.. -=.++...|-.+.+++|.|.|++.|=.
T Consensus 163 ~~P~vLfADEPTGNLD~~---------Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 163 GRPDVLFADEPTGNLDRA---------TGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred CCCCEEeccCCCCCcchh---------HHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 479999999999644321 112567777888899999999988854
No 410
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.14 E-value=1.6e-05 Score=66.08 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 38899999999999999999998877554
No 411
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.6e-05 Score=66.27 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998887653
No 412
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.13 E-value=1.7e-05 Score=67.03 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------c-Cch-H-HH--HHHHHHHHHHhhCCCceE
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------G-FYT-E-QS--AVINYLDKFVSEHKDVKV 143 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------~-~~~-~-~~--~~l~~l~~~l~~~~~~~l 143 (226)
+++|+|-||||||++|.++..... ..+.+|.+++.+. + +.. + .. .+...+++.+.. -.+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~------~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~---~~i 73 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE------EKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK---DTI 73 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH------HTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT----SE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH------hcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc---CeE
Confidence 689999999999999999998875 3667899998542 1 111 1 11 233455555553 389
Q ss_pred EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464 144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP 188 (226)
Q Consensus 144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~ 188 (226)
||+|+...+ + .+=..|-.+|++++++..++
T Consensus 74 VI~Dd~nYi-K--------------g~RYelyclAr~~~~~~c~i 103 (270)
T PF08433_consen 74 VILDDNNYI-K--------------GMRYELYCLARAYGTTFCVI 103 (270)
T ss_dssp EEE-S---S-H--------------HHHHHHHHHHHHTT-EEEEE
T ss_pred EEEeCCchH-H--------------HHHHHHHHHHHHcCCCEEEE
Confidence 999999732 2 12236667888888766544
No 413
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.13 E-value=1.3e-05 Score=65.73 Aligned_cols=114 Identities=13% Similarity=-0.014 Sum_probs=65.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEE-----EEeccccCc-----hHHHHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAI-----YIGKCLGFY-----TEQSAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vl-----yi~~e~~~~-----~~~~~~l~~l~~~l~~ 137 (226)
..+|+++.|+||+++|||+++..++..+.+-.... ....++- |......+. ..-...+.++..+++.
T Consensus 27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~ 106 (218)
T cd03286 27 ATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRH 106 (218)
T ss_pred ecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHh
Confidence 45688999999999999999999888765311000 0011111 111100000 0111235666677776
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHH-HHHHHHHcCCEEEEeccccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALK-LMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~-L~~la~~~~~~vi~~nq~~~ 193 (226)
..+.++|+||++..-... .++. .+... ++.+.+..++++|++.|-..
T Consensus 107 ~~~~sLvLlDE~~~Gt~~-----~dg~----~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 107 ATPDSLVILDELGRGTST-----HDGY----AIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CCCCeEEEEecccCCCCc-----hHHH----HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 567899999999753322 1222 22233 44555445888888888653
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=68.79 Aligned_cols=115 Identities=19% Similarity=0.110 Sum_probs=72.0
Q ss_pred CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEE----EeccccC-------------chH-----H-
Q 036464 68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY----IGKCLGF-------------YTE-----Q- 124 (226)
Q Consensus 68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vly----i~~e~~~-------------~~~-----~- 124 (226)
+|.+..|+++.+.||+|.|||||+.-+|..+ .|.+.+..+-+|-| |..+... +.. .
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei 439 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI 439 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence 3779999999999999999999998777554 34332222333333 3322100 000 0
Q ss_pred ---HH---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464 125 ---SA---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186 (226)
Q Consensus 125 ---~~---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi 186 (226)
+. -++.+.-.+.-....++.++|+++++++.+ .|. .+.+.+++++...+.+.+
T Consensus 440 ~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvE-----qR~----~vakvIRR~~e~~~kta~ 510 (591)
T COG1245 440 VKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE-----QRI----IVAKVIRRFIENNEKTAL 510 (591)
T ss_pred cCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHH-----HHH----HHHHHHHHHHhhcCceEE
Confidence 00 012221111112368999999999887442 333 567889999999999999
Q ss_pred Eecccc
Q 036464 187 EPNLAT 192 (226)
Q Consensus 187 ~~nq~~ 192 (226)
++.|=-
T Consensus 511 vVdHDi 516 (591)
T COG1245 511 VVDHDI 516 (591)
T ss_pred EEecce
Confidence 998853
No 415
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=4.2e-05 Score=63.59 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|+|++|+|||||+.-++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999999888653
No 416
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.12 E-value=1.4e-05 Score=81.70 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+||||++.-++.-+.
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 88999999999999999999987777664
No 417
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.12 E-value=9.6e-06 Score=66.86 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=33.5
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
++|++||+|++-+-+++. ..+.+...... .++.|.|||+.+|....++.
T Consensus 147 HePeLlILDEPFSGLDPV------N~elLk~~I~~----lk~~GatIifSsH~Me~vEe 195 (300)
T COG4152 147 HEPELLILDEPFSGLDPV------NVELLKDAIFE----LKEEGATIIFSSHRMEHVEE 195 (300)
T ss_pred cCCCEEEecCCccCCChh------hHHHHHHHHHH----HHhcCCEEEEecchHHHHHH
Confidence 479999999998665432 22233333333 35689999999999876654
No 418
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.12 E-value=3.2e-05 Score=71.39 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=34.7
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++++.++. .. ...+...|++++++++.+||+++|-...
T Consensus 443 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 443 KPSLIILDEPTSSLDK-----TV----QAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred CCCEEEeeCCccccCH-----HH----HHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 7999999999976633 12 2366777888888889999988887643
No 419
>CHL00181 cbbX CbbX; Provisional
Probab=98.12 E-value=2e-05 Score=67.29 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl 149 (226)
+|-.+.|.||||+|||++|..++..+.. .+- ..+++++++.. ...... .........+++. ...+++||++
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~---~g~~~~~~~~~v~~~--~l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~ 131 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYK---LGYIKKGHLLTVTRD--DLVGQYIGHTAPKTKEVLKKA-MGGVLFIDEA 131 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHH---cCCCCCCceEEecHH--HHHHHHhccchHHHHHHHHHc-cCCEEEEEcc
Confidence 4556899999999999999999887531 011 23457777633 111111 0112334555554 3479999999
Q ss_pred chhhhcCcCChHHHHHHHHHHHHHHHHHHHH--cCCEEEEeccc
Q 036464 150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKK--FSLALLEPNLA 191 (226)
Q Consensus 150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq~ 191 (226)
..+...+..... .. +....|.++..+ .++.||+++..
T Consensus 132 ~~l~~~~~~~~~-~~----e~~~~L~~~me~~~~~~~vI~ag~~ 170 (287)
T CHL00181 132 YYLYKPDNERDY-GS----EAIEILLQVMENQRDDLVVIFAGYK 170 (287)
T ss_pred chhccCCCccch-HH----HHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 987543211111 11 223333333322 45677777653
No 420
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=65.53 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999999888653
No 421
>PLN03232 ABC transporter C family member; Provisional
Probab=98.11 E-value=9.5e-06 Score=83.14 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+.-+..-+
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887765
No 422
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.6e-05 Score=72.50 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+||||+..-++.-.
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 8999999999999999999997666544
No 423
>PF05729 NACHT: NACHT domain
Probab=98.10 E-value=4.1e-05 Score=58.88 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=58.2
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchHHHH--------HHH-HHHHHHhhC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTEQSA--------VIN-YLDKFVSEH 138 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~~~~--------~l~-~l~~~l~~~ 138 (226)
+++.|.|+||+|||+++..++............-.-++|+..... ...+.+. ... .+...+. .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLE-K 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHH-c
Confidence 368899999999999999999888631110000012344443211 1111110 011 1222333 3
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+.-++|||.+..+...... ..+ .....++..+.....-.++.++++.....
T Consensus 80 ~~~~llilDglDE~~~~~~~--~~~-~~~~~~l~~l~~~~~~~~~~liit~r~~~ 131 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQS--QER-QRLLDLLSQLLPQALPPGVKLIITSRPRA 131 (166)
T ss_pred CCceEEEEechHhcccchhh--hHH-HHHHHHHHHHhhhccCCCCeEEEEEcCCh
Confidence 35678999999976542211 111 12223333333322236788888765543
No 424
>PLN03211 ABC transporter G-25; Provisional
Probab=98.10 E-value=1.2e-05 Score=75.99 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+-+++|+++.|.||+|+|||||+.-++...
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999998887654
No 425
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.10 E-value=5.5e-05 Score=62.99 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999999888643
No 426
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=2.4e-05 Score=65.59 Aligned_cols=29 Identities=28% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999998887643
No 427
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.09 E-value=3.5e-05 Score=65.65 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=46.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCCch
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
+.-+.|.||||+|||++|..++..+... .....+++++++.. .....+ .....+.+.+++. ...+++||++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~--g~~~~~~~v~v~~~--~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~ 132 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRL--GYVRKGHLVSVTRD--DLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYY 132 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCcccceEEEecHH--HHhHhhcccchHHHHHHHHHc-cCcEEEEechhh
Confidence 4468999999999999998888776410 00123467777743 111100 0112344556554 348999999997
Q ss_pred hhh
Q 036464 152 HFR 154 (226)
Q Consensus 152 l~~ 154 (226)
+..
T Consensus 133 L~~ 135 (284)
T TIGR02880 133 LYR 135 (284)
T ss_pred hcc
Confidence 653
No 428
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=6e-05 Score=62.76 Aligned_cols=28 Identities=32% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+++|+++.|.|++|+|||||+.-++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999999888754
No 429
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.08 E-value=2.4e-05 Score=65.23 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=25.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+++|+++.|.|++|+|||||+.-++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999999999877764
No 430
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.08 E-value=6.9e-05 Score=63.48 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
.++.++.++|++|+||||.+..+|..+. ..+.+|+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~------~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK------KQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEeCCC
Confidence 3468999999999999999999998876 4678999999764
No 431
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.08 E-value=5.2e-05 Score=69.87 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=35.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++++|++++.++. .. ...+.+.|++++++++.+||+++|-....
T Consensus 445 ~p~lLllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 491 (520)
T TIGR03269 445 EPRIVILDEPTGTMDP-----IT----KVDVTHSILKAREEMEQTFIIVSHDMDFV 491 (520)
T ss_pred CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence 7999999999976633 12 23667778888888899999998876543
No 432
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.08 E-value=2.3e-05 Score=66.75 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998877654
No 433
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.08 E-value=8.7e-05 Score=58.89 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=57.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhcccccc-------------CCCCCeEEEEecc----cc----------CchHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEF-------------GGLGGKAIYIGKC----LG----------FYTEQSAVI 128 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~-------------~~~~~~vlyi~~e----~~----------~~~~~~~~l 128 (226)
++.|+||+|+|||.+.-.++......... ...+....+|.-+ .+ .+..+. ..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~-~r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEK-SL 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHH-HH
Confidence 89999999999999987776554311000 0111111122111 00 011111 12
Q ss_pred HHHHHHHhh--CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 129 NYLDKFVSE--HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 129 ~~l~~~l~~--~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
-.+...+.. ..+++++++|++.+.++.. . ...+.+.|+++++ .+.++|++.|-..
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~-----~----~~~i~~~L~~~~~-~g~tiIiiSH~~~ 159 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPT-----N----RRRVSDMIKEMAK-HTSQFIVITLKKE 159 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHH-----H----HHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 223333321 2468999999999765331 1 2245566666664 4789998888654
No 434
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.07 E-value=1.4e-05 Score=75.19 Aligned_cols=30 Identities=33% Similarity=0.317 Sum_probs=27.1
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+-+++|+++.|.||+|+|||||+..++...
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 569999999999999999999998887654
No 435
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=8.8e-06 Score=75.12 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=69.4
Q ss_pred hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH--HHHHHHHHhhC--CCce
Q 036464 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV--INYLDKFVSEH--KDVK 142 (226)
Q Consensus 67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~--l~~l~~~l~~~--~~~~ 142 (226)
+|+-+|+| +.++||||+|||.|+..+|...-. +-.++++. ++.+..-- ...++++..+. ..+.
T Consensus 178 lGakiPkG--vlLvGpPGTGKTLLAkAvAgEA~V---------PFf~iSGS--~FVemfVGvGAsRVRdLF~qAkk~aP~ 244 (596)
T COG0465 178 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAGV---------PFFSISGS--DFVEMFVGVGASRVRDLFEQAKKNAPC 244 (596)
T ss_pred cccccccc--eeEecCCCCCcHHHHHHHhcccCC---------Cceeccch--hhhhhhcCCCcHHHHHHHHHhhccCCC
Confidence 35567888 899999999999999999877643 23444433 44444300 12333333321 2479
Q ss_pred EEEEcCCchhhhcCc----CChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464 143 VVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLE 187 (226)
Q Consensus 143 lvVIDsl~~l~~~~~----~~~~~r~~~l~~~~~~L~~la~~~~~~vi~ 187 (226)
+|+||++.+.-+..- ....+|.+-+++++..+..+-...++.|+.
T Consensus 245 IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 245 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 999999998766542 134578888888888888776434444443
No 436
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=6.7e-05 Score=66.41 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=50.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--chHHHHH--------------HHHHHHHHh-
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YTEQSAV--------------INYLDKFVS- 136 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~~~~~~--------------l~~l~~~l~- 136 (226)
..++.|+||+|+||||++..+|.... ..+.+|.++++..+. ..+|+.. -..+.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~------~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH------GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH------HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 46899999999999999999998875 467789999976432 2223211 122333332
Q ss_pred --hCCCceEEEEcCCchhh
Q 036464 137 --EHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 137 --~~~~~~lvVIDsl~~l~ 153 (226)
+..+.++|+||......
T Consensus 315 lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHhccCCCEEEEeCccccC
Confidence 22258999999998543
No 437
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=3.5e-05 Score=64.10 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999999887654
No 438
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.06 E-value=1.4e-05 Score=82.10 Aligned_cols=39 Identities=28% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
+++|+.+.|+|++|+|||||+.-+.+-+- ...+-++||+
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~-------~~~G~I~IdG 1347 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINE-------SAEGEIIIDG 1347 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcc-------CCCCeEEECC
Confidence 88999999999999999999988877653 3344566663
No 439
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=2.4e-05 Score=65.67 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998887654
No 440
>PRK13409 putative ATPase RIL; Provisional
Probab=98.06 E-value=2.6e-05 Score=72.97 Aligned_cols=29 Identities=34% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
=+++|+++.|.||+|+|||||+.-++...
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 37899999999999999999998777643
No 441
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.06 E-value=3.9e-05 Score=66.60 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=33.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. ..+ ..+...|+++.++.+.++|++.|-..
T Consensus 118 ~p~lllLDEP~s~LD~-----~~~----~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 118 KPKILLLDEPLSALDK-----KLR----DQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6899999999976633 122 25666777888888999998888653
No 442
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=72.95 Aligned_cols=108 Identities=21% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccc---cCCCCCeEEEEeccccC--------------c---hHH-H-HH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE---FGGLGGKAIYIGKCLGF--------------Y---TEQ-S-AV 127 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~---~~~~~~~vlyi~~e~~~--------------~---~~~-~-~~ 127 (226)
.+.+|+-+.|.||+|+|||||+.-++.... |.. ..+.+-++-|++-+... + .++ + ..
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence 588999999999999999999988865543 110 01334678888844200 0 000 0 00
Q ss_pred H------------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 128 I------------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 128 l------------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
+ -.+..++ ..++.++|+|+++++++. .-...|.....+|.=
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll--~~~pNvLiLDEPTNhLDi-------------~s~~aLe~aL~~f~G 487 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL--LQPPNLLLLDEPTNHLDI-------------ESLEALEEALLDFEG 487 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHHHh--ccCCCEEEEcCCCccCCH-------------HHHHHHHHHHHhCCC
Confidence 0 0111222 237899999999988743 123466666678999
Q ss_pred EEEEeccccc
Q 036464 184 ALLEPNLATT 193 (226)
Q Consensus 184 ~vi~~nq~~~ 193 (226)
+||+++|=+.
T Consensus 488 tvl~VSHDr~ 497 (530)
T COG0488 488 TVLLVSHDRY 497 (530)
T ss_pred eEEEEeCCHH
Confidence 9999999653
No 443
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.06 E-value=1.3e-05 Score=65.61 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=38.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
-+.++||||+||||||.-+|...- .+..++++....- ..++...+.+..+-++++||+++.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~---------~~~~~~sg~~i~k------~~dl~~il~~l~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG---------VNFKITSGPAIEK------AGDLAAILTNLKEGDILFIDEIHRL 113 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----------EEEEECCC--S------CHHHHHHHHT--TT-EEEECTCCC-
T ss_pred eEEEECCCccchhHHHHHHHhccC---------CCeEeccchhhhh------HHHHHHHHHhcCCCcEEEEechhhc
Confidence 578999999999999998888863 3455666531111 1222333333335689999999964
No 444
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=3.2e-05 Score=64.43 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999999998887654
No 445
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.3e-05 Score=64.33 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 7899999999999999999999888754
No 446
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=8.8e-05 Score=61.81 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999888654
No 447
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.3e-05 Score=64.82 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=26.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 38899999999999999999999887654
No 448
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=8.9e-05 Score=62.11 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999999888654
No 449
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=2.7e-05 Score=67.77 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|+|++|+|||+|+..++...
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 38999999999999999999999888665
No 450
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.6e-05 Score=64.83 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999998887643
No 451
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.05 E-value=3.2e-05 Score=80.71 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=26.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
++++|+++.|.|++|+||||++..++....
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ 1990 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTT 1990 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCC
Confidence 588999999999999999999988887653
No 452
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.05 E-value=3.7e-05 Score=64.99 Aligned_cols=29 Identities=28% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999999887654
No 453
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.04 E-value=3.3e-05 Score=64.35 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+.+|+++.|.|++|+|||||+..++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999888764
No 454
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=4.5e-05 Score=70.43 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999998888644
No 455
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.04 E-value=7.7e-05 Score=66.12 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=48.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH---------------------HHHHHHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE---------------------QSAVINYLDKF 134 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~---------------------~~~~l~~l~~~ 134 (226)
.+.|+|+||+|||+++..++....-. ..+..++|+++....... .-..+..+.+.
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~----~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEI----AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh----cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876410 124678898854211100 01223444455
Q ss_pred HhhCCCceEEEEcCCchhh
Q 036464 135 VSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~l~ 153 (226)
+....++-+||||++..+.
T Consensus 133 l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 133 LDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHhcCCEEEEEECCHhHhh
Confidence 5544467899999999765
No 456
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=9.4e-05 Score=62.72 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999999887654
No 457
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=4.7e-05 Score=70.35 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999888754
No 458
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=4.2e-05 Score=72.25 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998888654
No 459
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3.6e-05 Score=64.46 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998888754
No 460
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.03 E-value=2.5e-05 Score=71.59 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999998887543
No 461
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3e-05 Score=65.64 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998887543
No 462
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=4e-05 Score=63.90 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999888754
No 463
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.03 E-value=4.2e-05 Score=64.29 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=45.2
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccC-CCCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCCch
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-GLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
.-+.|+||||+|||++|..++..+.- .+ -..+.+++++... ..... .....+.+.++.. ...+|+||++..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v~~~~~~--l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~ 116 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLIEVERAD--LVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYS 116 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceEEecHHH--hhhhhccchHHHHHHHHHhc-cCCEEEEechhh
Confidence 45789999999999999999876531 00 1234566665431 11000 1123445556554 347999999998
Q ss_pred hhh
Q 036464 152 HFR 154 (226)
Q Consensus 152 l~~ 154 (226)
+.+
T Consensus 117 L~~ 119 (261)
T TIGR02881 117 LAR 119 (261)
T ss_pred hcc
Confidence 753
No 464
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.1e-05 Score=62.57 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+.+|++..|-||+|+|||||+..++-+
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999888754
No 465
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.03 E-value=4e-05 Score=68.97 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=38.8
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++...
T Consensus 139 ~~~l~tg~~vid~l~~--i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 139 REPMEVGVRAIDSLLT--VGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred ccccccchhhhheeee--ecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 4578999999999976 9999999999999999999997776654
No 466
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.03 E-value=4.4e-05 Score=64.51 Aligned_cols=28 Identities=39% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999999888764
No 467
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.03 E-value=4.2e-05 Score=70.14 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 7899999999999999999998888554
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.03 E-value=1.1e-05 Score=60.58 Aligned_cols=28 Identities=36% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+|++|+|||+|+..++...
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 6899999999999999999998776654
No 469
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.4e-05 Score=72.23 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=79.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.+-.=++++||||+|||+++..+|..... +-++|.+.. .-+.+.-..+..+-+..++. .+.+|++
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~-aP~IiFf 533 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGM---------NFLSVKGPELFSKYVGESERAIREVFRKARQV-APCIIFF 533 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcC---------CeeeccCHHHHHHhcCchHHHHHHHHHHHhhc-CCeEEeh
Confidence 5666667999999999999999999988753 455554321 00112223344555555554 5799999
Q ss_pred cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
|++.++...... ......+.++++++.+.-+-.+.++.||...+--..++..
T Consensus 534 DEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred hhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 999987654322 1122445688888888888888888888766555555543
No 470
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3.8e-05 Score=64.54 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 8899999999999999999998777554
No 471
>PTZ00243 ABC transporter; Provisional
Probab=98.02 E-value=1.7e-05 Score=81.52 Aligned_cols=29 Identities=34% Similarity=0.384 Sum_probs=25.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+++|+.+.|+|++|+|||||+.-+..-+-
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~ 1361 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVE 1361 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999999988876653
No 472
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=3.8e-05 Score=75.58 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+|+|+.+.|+|++||||||+..-+.+-+ .+..+-++||++
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~Rfy-------dP~~G~V~idG~ 415 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFY-------DPTSGEVLIDGE 415 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc-------CCCCceEEEcCc
Confidence 8999999999999999999986655555 466677888854
No 473
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=4e-05 Score=63.87 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999988764
No 474
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.02 E-value=5.9e-05 Score=62.53 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=61.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchH---------HHH-HH----HHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTE---------QSA-VI----NYLDKF 134 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~---------~~~-~l----~~l~~~ 134 (226)
-+.|.|++|||||++++.+..... ...+.+|+-++.. -.++ .++ .+ ..+.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~-------~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR-------HKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY 87 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc-------ccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999987764 2334455443320 0011 111 11 223333
Q ss_pred Hhh-----CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 135 VSE-----HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 135 l~~-----~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
... .+...+||+|.++.- . .+. +.+..+-.-.+.+++.++++.|.......
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~~------~--~k~----~~l~~~~~~gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGDK------K--LKS----KILRQFFNNGRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCCc------h--hhh----HHHHHHHhcccccceEEEEEeeecccCCH
Confidence 331 123569999998631 0 122 33445555678899999999999876654
No 475
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=3.9e-05 Score=64.79 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=25.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+.-++...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998887653
No 476
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.02 E-value=4.7e-05 Score=71.88 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999998887643
No 477
>PRK14974 cell division protein FtsY; Provisional
Probab=98.01 E-value=6.9e-05 Score=65.26 Aligned_cols=39 Identities=26% Similarity=0.167 Sum_probs=32.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
..++.++|+||+||||.+..++..+. ..+.+|+++++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~------~~g~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK------KNGFSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH------HcCCeEEEecCCc
Confidence 57999999999999999999998765 4567899988653
No 478
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=9e-05 Score=70.24 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
....++|+|++|+|||+++..++..+.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355688999999999999999998774
No 479
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=0.00011 Score=65.22 Aligned_cols=78 Identities=22% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH--------------HHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA--------------VINYLDKFVS 136 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~--------------~l~~l~~~l~ 136 (226)
.+.++.++||+|+||||.+..+|..+.+- ....+.+|.+++...+.. .+|+. ....+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~--~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGIN--SDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh--hccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 35799999999999999999999887531 012467888888664221 22221 1234555555
Q ss_pred hCCCceEEEEcCCchh
Q 036464 137 EHKDVKVVIIDSIAFH 152 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l 152 (226)
...+.++|+||.....
T Consensus 251 ~~~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QSKDFDLVLVDTIGKS 266 (388)
T ss_pred HhCCCCEEEEcCCCCC
Confidence 5567899999999854
No 480
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.01 E-value=4.4e-05 Score=61.95 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.6
Q ss_pred CchhHHHhhCC---CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 59 SCADLDNILGG---GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 59 g~~~LD~~l~G---Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
|.+.=+.+|.| -++.|+++.+.|.+|+|||||+..++....
T Consensus 14 g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~ 57 (263)
T COG1101 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK 57 (263)
T ss_pred CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc
Confidence 44444445544 489999999999999999999998888775
No 481
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.3e-05 Score=63.77 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.|++|+|||||+.-++..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999888754
No 482
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.00 E-value=2.4e-05 Score=80.17 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=26.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+|++|+|||||+..++.-+
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 7899999999999999999999888765
No 483
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.00 E-value=8.3e-05 Score=57.60 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+.|+|+||+||||+++.++-...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 478999999999999999997664
No 484
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.00 E-value=3.7e-05 Score=67.84 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEe---------ccc---c---CchHHH---------
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIG---------KCL---G---FYTEQS--------- 125 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~---------~e~---~---~~~~~~--------- 125 (226)
+.+|+++.|.|++|+|||++...++.... .+.+.-.+..+.+-+. +|. + ...+++
T Consensus 406 ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~ 485 (593)
T COG2401 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNA 485 (593)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhH
Confidence 78999999999999999999988877654 1111111111222111 111 0 111111
Q ss_pred --HH-------------------------HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464 126 --AV-------------------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 126 --~~-------------------------l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la 178 (226)
+. -..|.+++.+ ++.++++|++.++++.. -...+++.+.++|
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~---------TA~rVArkisela 554 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDEL---------TAVRVARKISELA 554 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHH---------HHHHHHHHHHHHH
Confidence 00 1134445543 68999999999987431 1236889999999
Q ss_pred HHcCCEEEEeccccc
Q 036464 179 KKFSLALLEPNLATT 193 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~ 193 (226)
++.++|++++.|--.
T Consensus 555 Re~giTlivvThrpE 569 (593)
T COG2401 555 REAGITLIVVTHRPE 569 (593)
T ss_pred HHhCCeEEEEecCHH
Confidence 999999998877654
No 485
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.5e-05 Score=65.82 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH------------------
Q 036464 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------ 124 (226)
Q Consensus 63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~------------------ 124 (226)
|...+.|+.|.. +.|+|+||+|||..+..++..+.-+ .....++||++.......+
T Consensus 33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~----~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~ 106 (366)
T COG1474 33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEES----SANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS 106 (366)
T ss_pred HHHHhcCCCCcc--EEEECCCCCCHhHHHHHHHHHHHhh----hccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc
Confidence 566677887776 8888999999999999999888521 1122389999764222221
Q ss_pred -HHHHHHHHHHHhhCCCceEEEEcCCchhhhc
Q 036464 125 -SAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155 (226)
Q Consensus 125 -~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~ 155 (226)
...++.+.+.+....+.-+||+|++..+...
T Consensus 107 ~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 107 SLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138 (366)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEcchhhhccc
Confidence 1234556666666557889999999988754
No 486
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=5.9e-05 Score=63.49 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.|++|+|||||+.-++..
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 33 IPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999999988854
No 487
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=4.2e-05 Score=65.16 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 62 IPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998887654
No 488
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=0.00014 Score=60.59 Aligned_cols=28 Identities=32% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999999888664
No 489
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.98 E-value=3.3e-05 Score=70.97 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998888643
No 490
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.98 E-value=7.7e-05 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.|++|+|||||+..++...
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999998887643
No 491
>PRK04195 replication factor C large subunit; Provisional
Probab=97.98 E-value=7.3e-05 Score=68.32 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=43.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh---C-CCceEEEEcCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE---H-KDVKVVIIDSI 149 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~---~-~~~~lvVIDsl 149 (226)
...++|+||||+|||+++..+|..+- ..++.++.......+.+. ..+...... . .+.++||||++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~---------~~~ielnasd~r~~~~i~--~~i~~~~~~~sl~~~~~kvIiIDEa 107 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG---------WEVIELNASDQRTADVIE--RVAGEAATSGSLFGARRKLILLDEV 107 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---------CCEEEEcccccccHHHHH--HHHHHhhccCcccCCCCeEEEEecC
Confidence 56799999999999999999988762 457777654222222211 111111111 1 25789999999
Q ss_pred chhh
Q 036464 150 AFHF 153 (226)
Q Consensus 150 ~~l~ 153 (226)
..+.
T Consensus 108 D~L~ 111 (482)
T PRK04195 108 DGIH 111 (482)
T ss_pred cccc
Confidence 8764
No 492
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.1e-05 Score=64.16 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=80.6
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe---ccc--cCchHHH
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG---KCL--GFYTEQS 125 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~---~e~--~~~~~~~ 125 (226)
++.--+|---+++-+-+ |+.+-.=+.++|+||+|||.||..+|..-. +-|+- +|. .-..+-.
T Consensus 198 KEsvELPLthPE~Yeem--GikpPKGVIlyG~PGTGKTLLAKAVANqTS-----------ATFlRvvGseLiQkylGdGp 264 (440)
T KOG0726|consen 198 KESVELPLTHPEYYEEM--GIKPPKGVILYGEPGTGKTLLAKAVANQTS-----------ATFLRVVGSELIQKYLGDGP 264 (440)
T ss_pred HHhhcCCCCCHHHHHHc--CCCCCCeeEEeCCCCCchhHHHHHHhcccc-----------hhhhhhhhHHHHHHHhccch
Confidence 34455666677777776 466666689999999999999988876543 12211 110 0011112
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH----HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 126 AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA----LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 126 ~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~----~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.++..+-+...++ .+.+++||+|.++=...++..+ +-++-+-++++.|..+-.+-.+-||+...-....+
T Consensus 265 klvRqlF~vA~e~-apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD 338 (440)
T KOG0726|consen 265 KLVRELFRVAEEH-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338 (440)
T ss_pred HHHHHHHHHHHhc-CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccC
Confidence 4566777777765 8999999999987655554222 22333445566666565666677775443333333
No 493
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.96 E-value=4.1e-05 Score=70.44 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+++|+++.|.|++|+|||||+..++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999999999887754
No 494
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.96 E-value=0.00014 Score=61.33 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+|+++.|.|++|+|||||+..++...
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999887754
No 495
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.96 E-value=4e-05 Score=70.13 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.|++|+|||||+..++...
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 8899999999999999999998887543
No 496
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00013 Score=62.01 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=64.1
Q ss_pred hHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC
Q 036464 41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF 120 (226)
Q Consensus 41 ~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~ 120 (226)
.|-+.|++. ..+|--++. ++.|+-.|=+=++++||||+|||-|+..+|...- .-|++-...+
T Consensus 140 ~AKeALKEA----VILPIKFPq---lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----------STFFSvSSSD 201 (439)
T KOG0739|consen 140 GAKEALKEA----VILPIKFPQ---LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----------STFFSVSSSD 201 (439)
T ss_pred hHHHHHHhh----eeecccchh---hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----------CceEEeehHH
Confidence 344444443 344444443 5667777777899999999999999998887752 4555532101
Q ss_pred -----chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcC
Q 036464 121 -----YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156 (226)
Q Consensus 121 -----~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~ 156 (226)
..|.-.++.++-++.+++ +|.+|+||++.++-...
T Consensus 202 LvSKWmGESEkLVknLFemARe~-kPSIIFiDEiDslcg~r 241 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSR 241 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhc-CCcEEEeehhhhhccCC
Confidence 112224567777777775 89999999999776543
No 497
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=7.4e-05 Score=62.25 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+.+|+++.|.|++|+|||||+..++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 789999999999999999999988753
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.96 E-value=0.0001 Score=59.38 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=55.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c------CchHH-------HHHHHHHHHHHhhCCC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G------FYTEQ-------SAVINYLDKFVSEHKD 140 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~------~~~~~-------~~~l~~l~~~l~~~~~ 140 (226)
.++.|+||+|+||||++..++....- ..++.++.+.... + ....| ....+.+...+.. +
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~-----~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~--~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK-----NKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ--D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh-----cCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC--C
Confidence 37899999999999999888777641 1233444443211 0 00000 1122334444443 6
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
++++++|++... +.+..+.+.+ ..|..|+.|.|....
T Consensus 75 pd~ii~gEird~----------------e~~~~~l~~a-~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDL----------------ETIRLALTAA-ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCH----------------HHHHHHHHHH-HcCCEEEEEecCCcH
Confidence 899999998521 1122323334 467888888887653
No 499
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.96 E-value=7.1e-05 Score=63.28 Aligned_cols=36 Identities=28% Similarity=0.097 Sum_probs=26.6
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.|+.+...|- ...+.|.|+||+|||||+..++....
T Consensus 101 ~l~~l~~~~~--~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 101 LLPYLVRNNR--VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHhCCC--eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4555553221 15789999999999999999887764
No 500
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.95 E-value=4.3e-05 Score=67.77 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHH-HHHHHHHhhCCCceEEEEcCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVI-NYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l-~~l~~~l~~~~~~~lvVIDsl 149 (226)
...-+.|+|+.|+|||+|++.++..+.. .+...+++|++.| .+...+ +.. +.++++=+.. ..++++||.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~se--~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDi 184 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTSE--DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDI 184 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccHH--HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechH
Confidence 4667899999999999999998887752 2345689999877 332221 111 3444454555 7899999999
Q ss_pred chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
+.+-..+ ..+. +++..+..+- +.|-.+|+|..-
T Consensus 185 q~l~gk~-----~~qe---efFh~FN~l~-~~~kqIvltsdr 217 (408)
T COG0593 185 QFLAGKE-----RTQE---EFFHTFNALL-ENGKQIVLTSDR 217 (408)
T ss_pred hHhcCCh-----hHHH---HHHHHHHHHH-hcCCEEEEEcCC
Confidence 9654321 1233 4444444443 345477777643
Done!