Query 036464
Match_columns 226
No_of_seqs 234 out of 1869
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z43_A DNA repair and recombin 100.0 6.9E-36 2.4E-40 257.1 16.8 196 1-197 12-263 (324)
2 1v5w_A DMC1, meiotic recombina 100.0 7.5E-36 2.6E-40 258.8 16.1 195 2-197 26-279 (343)
3 2i1q_A DNA repair and recombin 100.0 8.3E-35 2.9E-39 249.8 20.2 214 2-217 4-283 (322)
4 3lda_A DNA repair protein RAD5 100.0 2.1E-34 7.2E-39 253.8 20.9 194 2-197 82-333 (400)
5 1pzn_A RAD51, DNA repair and r 100.0 2.9E-33 9.7E-38 243.1 22.6 195 1-196 35-290 (349)
6 3io5_A Recombination and repai 99.9 1.7E-25 5.8E-30 189.8 12.5 150 52-210 3-188 (333)
7 1n0w_A DNA repair protein RAD5 99.9 2.9E-24 1E-28 175.8 15.3 145 52-197 2-179 (243)
8 4a1f_A DNAB helicase, replicat 99.9 1.4E-24 4.8E-29 187.1 11.1 153 51-212 24-230 (338)
9 3bh0_A DNAB-like replicative h 99.9 1.1E-23 3.8E-28 180.3 15.8 150 52-213 47-256 (315)
10 2zts_A Putative uncharacterize 99.9 3.7E-24 1.3E-28 175.7 10.5 133 51-194 7-184 (251)
11 3hr8_A Protein RECA; alpha and 99.9 2E-23 6.7E-28 181.1 13.5 157 53-217 39-222 (356)
12 2q6t_A DNAB replication FORK h 99.9 2.4E-23 8.2E-28 185.9 11.8 154 53-213 180-388 (444)
13 1xp8_A RECA protein, recombina 99.9 6.9E-23 2.4E-27 178.5 13.5 139 52-197 51-216 (366)
14 4a74_A DNA repair and recombin 99.9 4.5E-22 1.5E-26 161.4 16.5 143 52-194 3-182 (231)
15 3bgw_A DNAB-like replicative h 99.9 1.2E-22 4.2E-27 181.3 14.1 151 52-212 176-384 (444)
16 1u94_A RECA protein, recombina 99.9 7.3E-23 2.5E-27 177.8 11.9 139 52-197 40-205 (356)
17 2zr9_A Protein RECA, recombina 99.9 1.4E-22 4.9E-27 175.6 13.5 139 52-197 38-203 (349)
18 1q57_A DNA primase/helicase; d 99.9 6.4E-22 2.2E-26 179.2 16.1 152 51-212 219-431 (503)
19 2r6a_A DNAB helicase, replicat 99.9 2.3E-22 7.9E-27 180.1 12.6 153 52-212 182-388 (454)
20 2cvh_A DNA repair and recombin 99.9 7.8E-22 2.7E-26 159.0 13.1 147 55-217 1-177 (220)
21 3cmu_A Protein RECA, recombina 99.8 6E-21 2E-25 192.3 14.5 156 51-216 708-892 (2050)
22 2dr3_A UPF0273 protein PH0284; 99.8 1.9E-20 6.4E-25 153.3 12.7 127 54-194 3-175 (247)
23 3cmu_A Protein RECA, recombina 99.8 1.5E-20 5.1E-25 189.5 14.2 148 43-196 2-175 (2050)
24 3cmw_A Protein RECA, recombina 99.8 2.6E-20 9E-25 186.0 15.0 159 51-217 359-544 (1706)
25 3cmw_A Protein RECA, recombina 99.8 5.6E-20 1.9E-24 183.6 12.6 158 52-217 709-893 (1706)
26 2w0m_A SSO2452; RECA, SSPF, un 99.8 1.7E-18 5.7E-23 140.2 12.1 126 54-193 3-169 (235)
27 1cr0_A DNA primase/helicase; R 99.8 4E-18 1.4E-22 144.0 14.3 162 43-212 2-224 (296)
28 1nlf_A Regulatory protein REPA 99.7 1.9E-17 6.5E-22 138.9 11.0 132 54-195 11-184 (279)
29 2ehv_A Hypothetical protein PH 99.7 9.1E-17 3.1E-21 131.5 11.6 133 52-195 8-185 (251)
30 2vhj_A Ntpase P4, P4; non- hyd 99.7 4.1E-17 1.4E-21 138.9 6.6 123 54-190 104-234 (331)
31 1tf7_A KAIC; homohexamer, hexa 99.5 2.2E-13 7.4E-18 123.9 14.7 127 52-193 259-418 (525)
32 3bs4_A Uncharacterized protein 99.5 3.5E-13 1.2E-17 111.8 13.7 57 55-117 2-58 (260)
33 1tf7_A KAIC; homohexamer, hexa 99.4 2.7E-12 9.2E-17 116.7 12.0 134 51-195 16-188 (525)
34 1b22_A DNA repair protein RAD5 99.1 8.8E-12 3E-16 90.4 0.2 66 2-68 24-114 (114)
35 2b8t_A Thymidine kinase; deoxy 98.9 3.8E-09 1.3E-13 85.7 9.0 101 72-193 10-127 (223)
36 4b4t_J 26S protease regulatory 98.9 1.8E-08 6.1E-13 88.3 12.6 117 70-196 178-301 (405)
37 3ec2_A DNA replication protein 98.9 6E-09 2E-13 81.0 8.1 107 71-193 35-144 (180)
38 4b4t_M 26S protease regulatory 98.9 2.8E-08 9.4E-13 88.0 12.9 119 70-198 211-336 (434)
39 3tif_A Uncharacterized ABC tra 98.9 1.9E-08 6.5E-13 82.1 11.1 45 140-193 163-207 (235)
40 3rlf_A Maltose/maltodextrin im 98.8 2.5E-08 8.7E-13 86.9 12.0 44 140-192 151-194 (381)
41 4g1u_C Hemin import ATP-bindin 98.8 2.3E-08 7.7E-13 83.2 11.2 45 140-193 165-209 (266)
42 4b4t_L 26S protease subunit RP 98.8 4.3E-08 1.5E-12 86.8 13.1 119 70-198 211-336 (437)
43 4b4t_K 26S protease regulatory 98.8 3.6E-08 1.2E-12 87.2 12.4 117 70-196 202-325 (428)
44 3tui_C Methionine import ATP-b 98.8 2.6E-08 8.8E-13 86.3 10.8 45 140-193 181-225 (366)
45 3gfo_A Cobalt import ATP-bindi 98.8 2.6E-08 9E-13 83.2 10.3 48 139-195 160-207 (275)
46 4b4t_I 26S protease regulatory 98.8 5.3E-08 1.8E-12 85.8 12.5 119 70-198 212-337 (437)
47 3h4m_A Proteasome-activating n 98.8 8.5E-08 2.9E-12 79.6 12.9 117 70-196 47-170 (285)
48 3fvq_A Fe(3+) IONS import ATP- 98.8 6.6E-08 2.2E-12 83.6 11.8 45 139-192 155-199 (359)
49 1z47_A CYSA, putative ABC-tran 98.7 7.8E-08 2.7E-12 83.1 11.0 46 139-193 162-207 (355)
50 2yyz_A Sugar ABC transporter, 98.7 9E-08 3.1E-12 82.9 11.4 46 139-193 150-195 (359)
51 4gp7_A Metallophosphoesterase; 98.7 1.4E-08 4.9E-13 78.6 5.7 23 71-93 6-28 (171)
52 2pcj_A ABC transporter, lipopr 98.7 6.9E-08 2.3E-12 78.2 10.0 45 139-193 157-201 (224)
53 2it1_A 362AA long hypothetical 98.7 9.9E-08 3.4E-12 82.7 11.4 45 139-192 150-194 (362)
54 4b4t_H 26S protease regulatory 98.7 1.2E-07 4.2E-12 84.2 12.1 117 70-196 239-362 (467)
55 2kjq_A DNAA-related protein; s 98.7 6.1E-08 2.1E-12 73.6 8.3 60 73-151 35-94 (149)
56 1vpl_A ABC transporter, ATP-bi 98.7 1.3E-07 4.3E-12 78.3 10.8 28 71-98 38-65 (256)
57 1xwi_A SKD1 protein; VPS4B, AA 98.7 2E-07 6.8E-12 79.4 11.8 114 67-189 38-156 (322)
58 1v43_A Sugar-binding transport 98.7 1E-07 3.5E-12 82.9 9.9 44 140-192 159-202 (372)
59 2olj_A Amino acid ABC transpor 98.7 1.9E-07 6.6E-12 77.4 11.1 45 139-193 176-220 (263)
60 3d31_A Sulfate/molybdate ABC t 98.6 1.4E-07 4.7E-12 81.4 9.9 45 139-192 144-188 (348)
61 1g6h_A High-affinity branched- 98.6 1.3E-07 4.4E-12 78.2 9.2 46 140-195 171-216 (257)
62 3bos_A Putative DNA replicatio 98.6 1.4E-07 4.7E-12 75.7 9.1 96 73-190 51-147 (242)
63 1mv5_A LMRA, multidrug resista 98.6 2.6E-07 8.9E-12 75.6 10.7 28 71-98 25-52 (243)
64 2onk_A Molybdate/tungstate ABC 98.6 1.7E-07 5.8E-12 76.7 9.3 45 139-192 143-187 (240)
65 2orw_A Thymidine kinase; TMTK, 98.6 1.5E-07 5E-12 73.9 8.5 100 73-193 2-114 (184)
66 1oxx_K GLCV, glucose, ABC tran 98.6 8.6E-08 3E-12 82.8 7.6 45 139-192 157-201 (353)
67 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3.8E-07 1.3E-11 74.5 11.0 75 70-154 35-112 (262)
68 1g29_1 MALK, maltose transport 98.6 3.6E-07 1.2E-11 79.5 11.3 44 140-192 157-200 (372)
69 2nq2_C Hypothetical ABC transp 98.6 4.9E-07 1.7E-11 74.5 11.4 110 71-193 28-190 (253)
70 2ixe_A Antigen peptide transpo 98.6 2.5E-07 8.6E-12 77.0 9.7 46 139-193 173-218 (271)
71 1ji0_A ABC transporter; ATP bi 98.6 3.5E-07 1.2E-11 74.8 10.3 27 71-97 29-55 (240)
72 2qi9_C Vitamin B12 import ATP- 98.6 3.3E-07 1.1E-11 75.4 10.2 28 71-98 23-50 (249)
73 3nh6_A ATP-binding cassette SU 98.6 1.1E-07 3.7E-12 80.7 7.3 28 71-98 77-104 (306)
74 2p65_A Hypothetical protein PF 98.6 4.8E-07 1.6E-11 69.5 10.3 112 74-191 43-161 (187)
75 3eie_A Vacuolar protein sortin 98.6 3.8E-07 1.3E-11 77.5 10.4 114 68-191 45-163 (322)
76 2ff7_A Alpha-hemolysin translo 98.5 4.8E-07 1.6E-11 74.3 10.6 28 71-98 32-59 (247)
77 1jbk_A CLPB protein; beta barr 98.5 4.3E-07 1.5E-11 69.9 9.4 112 73-190 42-159 (195)
78 3cf2_A TER ATPase, transitiona 98.5 5.7E-07 1.9E-11 85.2 11.9 119 70-198 234-356 (806)
79 2ce7_A Cell division protein F 98.5 1.1E-06 3.9E-11 78.6 12.7 116 69-196 46-168 (476)
80 3cf0_A Transitional endoplasmi 98.5 4.4E-07 1.5E-11 76.4 9.4 116 69-196 44-168 (301)
81 1sgw_A Putative ABC transporte 98.5 3.7E-07 1.3E-11 73.4 8.4 27 71-97 32-58 (214)
82 1c9k_A COBU, adenosylcobinamid 98.5 1.7E-07 5.8E-12 73.4 6.0 111 76-196 1-141 (180)
83 1l8q_A Chromosomal replication 98.5 6E-07 2.1E-11 76.1 9.7 73 73-153 36-111 (324)
84 3ozx_A RNAse L inhibitor; ATP 98.5 6.9E-07 2.3E-11 81.3 10.4 109 71-192 291-446 (538)
85 2qp9_X Vacuolar protein sortin 98.5 1.2E-06 4.2E-11 75.5 11.4 112 69-190 79-195 (355)
86 1fnn_A CDC6P, cell division co 98.5 1.8E-06 6E-11 74.3 12.4 100 76-191 46-168 (389)
87 3t15_A Ribulose bisphosphate c 98.5 9.2E-07 3.2E-11 74.3 10.3 75 70-154 32-113 (293)
88 1b0u_A Histidine permease; ABC 98.4 1.3E-06 4.6E-11 72.2 10.7 27 71-97 29-55 (262)
89 3bk7_A ABC transporter ATP-bin 98.4 2.6E-06 8.7E-11 78.6 13.0 111 71-192 379-532 (607)
90 2d2e_A SUFC protein; ABC-ATPas 98.4 9.2E-07 3.1E-11 72.7 9.0 27 71-97 26-52 (250)
91 2ihy_A ABC transporter, ATP-bi 98.4 1.2E-06 4.2E-11 73.1 9.9 28 71-98 44-71 (279)
92 2ghi_A Transport protein; mult 98.4 2E-06 7E-11 71.0 10.9 28 71-98 43-70 (260)
93 1lv7_A FTSH; alpha/beta domain 98.4 1.4E-06 4.9E-11 71.2 9.8 109 77-195 48-163 (257)
94 2qby_A CDC6 homolog 1, cell di 98.4 8.8E-07 3E-11 75.9 8.8 108 72-192 43-173 (386)
95 2yz2_A Putative ABC transporte 98.4 2.4E-06 8.3E-11 70.8 11.1 46 139-194 155-200 (266)
96 2j9r_A Thymidine kinase; TK1, 98.4 1.4E-06 4.7E-11 69.9 9.0 99 72-192 26-138 (214)
97 3qf4_B Uncharacterized ABC tra 98.4 8.8E-07 3E-11 81.6 8.7 28 71-98 378-405 (598)
98 1yqt_A RNAse L inhibitor; ATP- 98.4 3.3E-06 1.1E-10 76.8 12.3 111 71-192 309-462 (538)
99 2r8r_A Sensor protein; KDPD, P 98.4 2.5E-06 8.5E-11 69.0 10.2 103 73-192 4-127 (228)
100 2w58_A DNAI, primosome compone 98.4 9.3E-07 3.2E-11 69.6 7.6 66 75-151 55-126 (202)
101 2v1u_A Cell division control p 98.4 2.3E-06 7.7E-11 73.4 10.6 83 72-154 42-144 (387)
102 2cbz_A Multidrug resistance-as 98.4 1.1E-06 3.7E-11 71.7 7.9 29 70-98 27-55 (237)
103 3j16_B RLI1P; ribosome recycli 98.3 3.3E-06 1.1E-10 77.8 12.0 111 69-192 373-528 (608)
104 3b9p_A CG5977-PA, isoform A; A 98.3 2.5E-06 8.7E-11 71.1 10.3 74 72-155 52-128 (297)
105 3b5x_A Lipid A export ATP-bind 98.3 1.2E-06 4.3E-11 80.3 8.9 28 71-98 366-393 (582)
106 3qf4_A ABC transporter, ATP-bi 98.3 7.1E-07 2.4E-11 82.0 7.0 28 71-98 366-393 (587)
107 3b60_A Lipid A export ATP-bind 98.3 1.2E-06 4.3E-11 80.3 8.6 28 71-98 366-393 (582)
108 1j8m_F SRP54, signal recogniti 98.3 3.6E-06 1.2E-10 71.0 10.7 57 56-118 73-136 (297)
109 1w4r_A Thymidine kinase; type 98.3 8.3E-07 2.8E-11 70.2 6.2 104 72-198 18-132 (195)
110 3syl_A Protein CBBX; photosynt 98.3 1.6E-06 5.3E-11 72.7 8.2 79 72-155 65-145 (309)
111 3hu3_A Transitional endoplasmi 98.3 6.2E-06 2.1E-10 74.2 12.3 115 70-194 234-352 (489)
112 1xx6_A Thymidine kinase; NESG, 98.3 3.8E-06 1.3E-10 66.3 9.5 98 72-192 6-118 (191)
113 3d8b_A Fidgetin-like protein 1 98.3 8.1E-06 2.8E-10 70.3 12.3 109 72-190 115-229 (357)
114 2pze_A Cystic fibrosis transme 98.3 1.7E-06 5.8E-11 70.2 7.6 28 71-98 31-58 (229)
115 2dhr_A FTSH; AAA+ protein, hex 98.3 4.5E-06 1.5E-10 75.2 11.1 116 69-197 61-184 (499)
116 2z4s_A Chromosomal replication 98.3 3.5E-06 1.2E-10 74.8 9.8 102 74-190 130-235 (440)
117 3vfd_A Spastin; ATPase, microt 98.3 6.9E-06 2.4E-10 71.5 11.4 110 72-191 146-261 (389)
118 3thx_B DNA mismatch repair pro 98.3 6.2E-06 2.1E-10 79.2 11.9 113 71-192 670-796 (918)
119 4a82_A Cystic fibrosis transme 98.2 1.2E-06 4.2E-11 80.3 6.6 28 71-98 364-391 (578)
120 2yl4_A ATP-binding cassette SU 98.2 2E-06 6.8E-11 79.1 8.0 28 71-98 367-394 (595)
121 1ixz_A ATP-dependent metallopr 98.2 6.9E-06 2.3E-10 67.0 10.4 71 70-153 47-121 (254)
122 2zu0_C Probable ATP-dependent 98.2 3.2E-06 1.1E-10 70.1 8.4 27 71-97 43-69 (267)
123 2zan_A Vacuolar protein sortin 98.2 1.1E-06 3.7E-11 78.1 5.9 77 69-154 162-241 (444)
124 3kl4_A SRP54, signal recogniti 98.2 1.8E-05 6.1E-10 70.0 13.2 40 73-118 96-135 (433)
125 1ypw_A Transitional endoplasmi 98.2 9.1E-06 3.1E-10 77.3 11.8 117 70-196 234-354 (806)
126 1yqt_A RNAse L inhibitor; ATP- 98.2 1.2E-05 4.2E-10 73.0 12.1 29 70-98 43-71 (538)
127 3jvv_A Twitching mobility prot 98.2 5.1E-06 1.7E-10 71.8 8.8 101 71-195 120-234 (356)
128 3thx_A DNA mismatch repair pro 98.2 1.3E-05 4.4E-10 77.2 12.4 113 71-192 659-785 (934)
129 2x8a_A Nuclear valosin-contain 98.2 8.9E-06 3E-10 67.6 10.0 71 71-153 43-116 (274)
130 2eyu_A Twitching motility prot 98.2 8.8E-06 3E-10 67.3 9.9 105 61-192 15-133 (261)
131 2qgz_A Helicase loader, putati 98.2 1.1E-06 3.9E-11 74.3 4.6 71 74-151 152-225 (308)
132 2chg_A Replication factor C sm 98.2 1.2E-05 3.9E-10 63.1 10.0 70 77-152 41-114 (226)
133 3gd7_A Fusion complex of cysti 98.2 5E-06 1.7E-10 72.6 8.3 27 71-97 44-70 (390)
134 3e70_C DPA, signal recognition 98.1 1.8E-05 6E-10 67.6 11.3 111 72-192 127-279 (328)
135 3cf2_A TER ATPase, transitiona 98.1 2.5E-06 8.7E-11 80.7 6.4 113 69-191 506-626 (806)
136 2yhs_A FTSY, cell division pro 98.1 2.2E-05 7.6E-10 70.4 12.2 42 71-118 290-331 (503)
137 4fcw_A Chaperone protein CLPB; 98.1 2.4E-05 8.2E-10 65.3 11.6 73 73-152 46-131 (311)
138 2px0_A Flagellar biosynthesis 98.1 1E-05 3.5E-10 68.1 9.3 74 72-150 103-192 (296)
139 1sxj_A Activator 1 95 kDa subu 98.1 7.6E-06 2.6E-10 74.0 9.0 99 72-190 75-187 (516)
140 1rj9_A FTSY, signal recognitio 98.1 4.7E-05 1.6E-09 64.3 13.3 40 73-118 101-140 (304)
141 2qby_B CDC6 homolog 3, cell di 98.1 1E-05 3.5E-10 69.5 9.3 79 74-154 45-147 (384)
142 3u61_B DNA polymerase accessor 98.1 2.2E-05 7.6E-10 66.2 11.2 67 75-153 49-118 (324)
143 4f4c_A Multidrug resistance pr 98.1 7.5E-06 2.6E-10 81.7 9.1 28 71-98 441-468 (1321)
144 3ozx_A RNAse L inhibitor; ATP 98.1 5.3E-06 1.8E-10 75.4 7.3 27 71-97 22-48 (538)
145 3b9q_A Chloroplast SRP recepto 98.1 4.7E-05 1.6E-09 64.2 12.6 40 71-116 97-136 (302)
146 4f4c_A Multidrug resistance pr 98.1 2.5E-06 8.5E-11 85.1 5.4 39 71-116 1102-1140(1321)
147 1iy2_A ATP-dependent metallopr 98.1 1.8E-05 6.1E-10 65.6 9.8 72 70-153 71-145 (278)
148 3bk7_A ABC transporter ATP-bin 98.1 2.9E-05 9.8E-10 71.6 12.1 29 70-98 113-141 (607)
149 2orv_A Thymidine kinase; TP4A 98.1 1.8E-05 6.2E-10 64.1 8.9 99 72-192 17-126 (234)
150 1d2n_A N-ethylmaleimide-sensit 98.0 1.1E-05 3.8E-10 66.5 7.9 74 71-154 61-138 (272)
151 3ux8_A Excinuclease ABC, A sub 98.0 1.5E-05 5.3E-10 74.2 9.5 45 139-193 221-265 (670)
152 1vma_A Cell division protein F 98.0 3.7E-05 1.3E-09 65.0 10.9 42 71-118 101-142 (306)
153 3g5u_A MCG1178, multidrug resi 98.0 8.3E-06 2.9E-10 81.2 8.0 28 71-98 413-440 (1284)
154 3j16_B RLI1P; ribosome recycli 98.0 7.1E-06 2.4E-10 75.6 6.8 27 71-97 100-126 (608)
155 3dm5_A SRP54, signal recogniti 98.0 4.3E-05 1.5E-09 67.7 11.5 40 73-118 99-138 (443)
156 2og2_A Putative signal recogni 98.0 7E-05 2.4E-09 64.7 12.6 40 71-116 154-193 (359)
157 1sxj_E Activator 1 40 kDa subu 98.0 5.1E-05 1.7E-09 64.6 11.7 23 77-99 39-61 (354)
158 1wb9_A DNA mismatch repair pro 98.0 5.1E-05 1.7E-09 72.0 12.6 113 72-193 605-731 (800)
159 3e2i_A Thymidine kinase; Zn-bi 98.0 1.1E-05 3.8E-10 64.7 6.9 119 58-198 12-143 (219)
160 3ux8_A Excinuclease ABC, A sub 98.0 3.5E-05 1.2E-09 71.8 11.3 44 140-193 564-607 (670)
161 2o8b_B DNA mismatch repair pro 98.0 2.3E-05 7.8E-10 76.2 10.0 111 74-193 789-913 (1022)
162 1ye8_A Protein THEP1, hypothet 98.0 6.5E-05 2.2E-09 58.4 10.7 23 76-98 2-24 (178)
163 3uk6_A RUVB-like 2; hexameric 98.0 5.8E-05 2E-09 64.6 11.4 32 68-99 64-95 (368)
164 3te6_A Regulatory protein SIR3 98.0 6.4E-05 2.2E-09 63.8 11.4 90 62-153 35-145 (318)
165 2bbs_A Cystic fibrosis transme 98.0 1E-05 3.5E-10 67.9 6.2 27 71-97 61-87 (290)
166 1g5t_A COB(I)alamin adenosyltr 98.0 6.4E-05 2.2E-09 59.4 10.2 103 73-191 27-162 (196)
167 1ypw_A Transitional endoplasmi 97.9 2E-06 6.9E-11 81.8 1.4 119 69-197 506-631 (806)
168 3n70_A Transport activator; si 97.9 1.8E-05 6.3E-10 59.1 5.9 65 74-152 24-88 (145)
169 1sky_E F1-ATPase, F1-ATP synth 97.9 4.2E-05 1.4E-09 68.1 9.0 47 51-99 130-176 (473)
170 3pfi_A Holliday junction ATP-d 97.9 0.00012 4.2E-09 61.9 11.5 63 75-152 56-118 (338)
171 3g5u_A MCG1178, multidrug resi 97.9 1.3E-05 4.5E-10 79.8 6.0 28 71-98 1056-1083(1284)
172 1ewq_A DNA mismatch repair pro 97.9 0.00011 3.7E-09 69.4 11.8 106 74-192 576-698 (765)
173 2v3c_C SRP54, signal recogniti 97.9 1.6E-05 5.5E-10 70.4 5.8 84 63-152 81-192 (432)
174 3ice_A Transcription terminati 97.9 2.9E-05 9.9E-10 67.6 7.2 44 54-99 156-199 (422)
175 1sxj_D Activator 1 41 kDa subu 97.8 9.6E-05 3.3E-09 62.6 10.3 87 61-152 47-145 (353)
176 1ofh_A ATP-dependent HSL prote 97.8 6.5E-05 2.2E-09 62.4 9.0 73 74-155 50-131 (310)
177 1zu4_A FTSY; GTPase, signal re 97.8 6.8E-05 2.3E-09 63.7 9.2 42 71-118 102-143 (320)
178 1njg_A DNA polymerase III subu 97.8 9.6E-05 3.3E-09 58.4 9.2 25 75-99 46-70 (250)
179 2bjv_A PSP operon transcriptio 97.8 0.00016 5.4E-09 59.2 10.7 38 74-117 29-66 (265)
180 3pvs_A Replication-associated 97.8 0.00011 3.9E-09 65.2 10.4 68 75-152 51-118 (447)
181 1hqc_A RUVB; extended AAA-ATPa 97.8 0.00022 7.6E-09 59.7 11.5 64 74-152 38-102 (324)
182 1w5s_A Origin recognition comp 97.8 0.0001 3.5E-09 63.7 9.6 81 73-153 49-151 (412)
183 2ewv_A Twitching motility prot 97.8 4.8E-05 1.6E-09 66.0 7.3 98 71-192 133-244 (372)
184 2pt7_A CAG-ALFA; ATPase, prote 97.8 3.4E-05 1.2E-09 65.8 6.2 97 71-193 168-276 (330)
185 1sxj_C Activator 1 40 kDa subu 97.8 4.8E-05 1.7E-09 64.7 7.2 68 77-152 49-122 (340)
186 2qen_A Walker-type ATPase; unk 97.8 0.00011 3.8E-09 61.9 9.2 31 75-116 32-62 (350)
187 4aby_A DNA repair protein RECN 97.7 0.0001 3.5E-09 64.3 9.0 27 70-97 57-83 (415)
188 2j37_W Signal recognition part 97.7 0.00026 9E-09 63.7 11.6 51 62-118 82-139 (504)
189 2c9o_A RUVB-like 1; hexameric 97.7 4E-05 1.4E-09 68.1 6.1 76 70-155 59-141 (456)
190 1iqp_A RFCS; clamp loader, ext 97.7 0.00015 5.2E-09 60.5 9.3 70 77-152 49-122 (327)
191 3co5_A Putative two-component 97.7 3.5E-05 1.2E-09 57.5 4.6 60 75-152 28-87 (143)
192 2fna_A Conserved hypothetical 97.7 0.00023 7.8E-09 60.0 10.3 34 75-117 31-64 (357)
193 1ls1_A Signal recognition part 97.7 9.4E-05 3.2E-09 62.1 7.7 40 73-118 97-136 (295)
194 2obl_A ESCN; ATPase, hydrolase 97.7 5.2E-05 1.8E-09 65.2 6.2 45 53-99 52-96 (347)
195 1qvr_A CLPB protein; coiled co 97.7 0.00013 4.5E-09 69.7 9.6 107 75-189 192-306 (854)
196 2va8_A SSO2462, SKI2-type heli 97.7 0.00018 6E-09 67.3 10.3 75 1-115 8-82 (715)
197 1sxj_B Activator 1 37 kDa subu 97.7 0.00018 6E-09 60.1 9.3 70 77-152 45-119 (323)
198 2dpy_A FLII, flagellum-specifi 97.7 7.3E-05 2.5E-09 66.3 6.9 44 53-98 138-181 (438)
199 3end_A Light-independent proto 97.7 0.00038 1.3E-08 58.2 11.0 40 72-117 39-78 (307)
200 2iw3_A Elongation factor 3A; a 97.7 0.00029 9.9E-09 68.0 11.3 26 71-96 458-483 (986)
201 3pih_A Uvrabc system protein A 97.6 0.00028 9.5E-09 67.8 11.1 46 140-195 826-871 (916)
202 1a5t_A Delta prime, HOLB; zinc 97.6 0.00052 1.8E-08 58.3 11.8 79 74-152 24-120 (334)
203 1zp6_A Hypothetical protein AT 97.6 3.1E-05 1.1E-09 60.0 3.7 28 70-97 5-32 (191)
204 2npi_A Protein CLP1; CLP1-PCF1 97.6 5.4E-05 1.9E-09 67.5 5.7 28 71-98 135-162 (460)
205 1um8_A ATP-dependent CLP prote 97.6 0.00031 1.1E-08 60.5 10.0 74 72-154 70-151 (376)
206 3pxi_A Negative regulator of g 97.6 0.00017 5.7E-09 68.1 8.8 69 76-152 523-591 (758)
207 2zj8_A DNA helicase, putative 97.5 0.00018 6E-09 67.4 8.1 75 1-115 1-75 (720)
208 2yvu_A Probable adenylyl-sulfa 97.5 8.5E-05 2.9E-09 57.5 5.0 48 62-117 3-50 (186)
209 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00068 2.3E-08 55.5 10.7 39 73-117 3-41 (260)
210 2ffh_A Protein (FFH); SRP54, s 97.5 0.00031 1.1E-08 61.9 9.1 40 73-118 97-136 (425)
211 1jr3_A DNA polymerase III subu 97.5 0.00027 9.2E-09 60.3 8.6 25 75-99 39-63 (373)
212 3zq6_A Putative arsenical pump 97.5 0.001 3.5E-08 56.3 12.0 37 75-117 15-51 (324)
213 1qvr_A CLPB protein; coiled co 97.5 0.00022 7.6E-09 68.1 8.6 71 75-152 589-672 (854)
214 2r9v_A ATP synthase subunit al 97.5 0.0003 1E-08 63.0 8.7 57 51-115 154-210 (515)
215 3l0o_A Transcription terminati 97.5 0.00023 8E-09 61.9 7.7 44 54-99 157-200 (427)
216 2gno_A DNA polymerase III, gam 97.5 0.00076 2.6E-08 56.8 10.7 73 74-152 18-94 (305)
217 2ius_A DNA translocase FTSK; n 97.5 0.00068 2.3E-08 61.1 11.0 44 143-193 300-343 (512)
218 1in4_A RUVB, holliday junction 97.5 0.00036 1.2E-08 59.3 8.8 64 75-153 52-115 (334)
219 1kgd_A CASK, peripheral plasma 97.5 7.3E-05 2.5E-09 57.8 4.0 29 70-98 1-29 (180)
220 1z3e_B DNA-directed RNA polyme 97.5 0.00022 7.5E-09 47.1 5.7 47 1-47 9-59 (73)
221 3uie_A Adenylyl-sulfate kinase 97.5 0.00012 4.2E-09 57.4 4.9 40 72-117 23-62 (200)
222 2pez_A Bifunctional 3'-phospho 97.4 0.00012 4.2E-09 56.2 4.7 40 72-117 3-42 (179)
223 2r62_A Cell division protease 97.4 1.8E-05 6.1E-10 64.9 -0.1 23 77-99 47-69 (268)
224 2xxa_A Signal recognition part 97.4 0.00041 1.4E-08 61.3 8.6 39 74-118 100-139 (433)
225 1fx0_A ATP synthase alpha chai 97.4 0.00032 1.1E-08 62.8 7.8 56 52-115 143-198 (507)
226 1wcn_A Transcription elongatio 97.4 0.00018 6.3E-09 47.2 4.6 47 3-49 9-60 (70)
227 2ck3_A ATP synthase subunit al 97.4 0.00066 2.2E-08 60.9 9.4 47 51-99 141-187 (510)
228 4a8j_A Elongator complex prote 97.4 5.3E-05 1.8E-09 65.1 2.3 37 53-92 18-55 (361)
229 3hws_A ATP-dependent CLP prote 97.4 0.0004 1.4E-08 59.6 7.9 74 73-155 50-131 (363)
230 1znw_A Guanylate kinase, GMP k 97.4 9.3E-05 3.2E-09 58.5 3.6 28 71-98 17-44 (207)
231 3tr0_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 57.7 3.6 28 71-98 4-31 (205)
232 1htw_A HI0065; nucleotide-bind 97.4 0.00015 5E-09 55.3 4.3 28 71-98 30-57 (158)
233 1tue_A Replication protein E1; 97.4 0.0001 3.5E-09 58.7 3.5 38 60-98 45-82 (212)
234 2rhm_A Putative kinase; P-loop 97.4 0.00015 5.3E-09 56.0 4.3 29 70-98 1-29 (193)
235 3ug7_A Arsenical pump-driving 97.4 0.0025 8.5E-08 54.6 12.2 41 71-117 23-63 (349)
236 1ojl_A Transcriptional regulat 97.4 0.00061 2.1E-08 57.2 8.3 39 73-117 24-62 (304)
237 3gfk_B DNA-directed RNA polyme 97.3 0.00033 1.1E-08 46.9 5.2 37 1-37 16-52 (79)
238 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.8E-09 56.9 3.8 28 71-98 3-30 (207)
239 2qm8_A GTPase/ATPase; G protei 97.3 0.00066 2.3E-08 58.0 8.3 39 71-115 52-90 (337)
240 3c8u_A Fructokinase; YP_612366 97.3 0.00017 6E-09 56.9 4.1 29 71-99 19-47 (208)
241 1rz3_A Hypothetical protein rb 97.3 0.00036 1.2E-08 54.8 5.9 41 71-117 19-59 (201)
242 1z6g_A Guanylate kinase; struc 97.3 0.00014 4.8E-09 58.1 3.5 28 71-98 20-47 (218)
243 3zvl_A Bifunctional polynucleo 97.3 0.00076 2.6E-08 59.2 8.4 63 72-150 256-318 (416)
244 3k4g_A DNA-directed RNA polyme 97.3 0.00052 1.8E-08 46.7 5.6 47 1-47 12-62 (86)
245 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0021 7.1E-08 60.5 11.7 67 75-152 489-569 (758)
246 2kz3_A Putative uncharacterize 97.3 0.00069 2.4E-08 45.9 6.1 43 3-45 6-53 (83)
247 3e1s_A Exodeoxyribonuclease V, 97.3 0.00046 1.6E-08 63.2 6.9 37 74-116 204-240 (574)
248 2chq_A Replication factor C sm 97.2 0.00028 9.7E-09 58.7 5.0 70 77-152 41-114 (319)
249 3gqb_B V-type ATP synthase bet 97.2 0.00081 2.8E-08 59.6 8.1 47 51-99 126-172 (464)
250 2iut_A DNA translocase FTSK; n 97.2 0.0035 1.2E-07 57.1 12.3 46 141-193 344-389 (574)
251 2ygr_A Uvrabc system protein A 97.2 0.0016 5.5E-08 62.8 10.6 26 70-95 664-689 (993)
252 4eun_A Thermoresistant glucoki 97.2 0.00021 7.3E-09 56.0 3.9 27 72-98 27-53 (200)
253 3iqw_A Tail-anchored protein t 97.2 0.0017 5.7E-08 55.4 9.7 48 62-117 6-53 (334)
254 1s96_A Guanylate kinase, GMP k 97.2 0.00021 7.2E-09 57.4 3.8 29 70-98 12-40 (219)
255 3oaa_A ATP synthase subunit al 97.2 0.01 3.5E-07 53.1 14.9 57 51-115 141-197 (513)
256 2qe7_A ATP synthase subunit al 97.2 0.0085 2.9E-07 53.6 14.3 57 51-115 141-197 (502)
257 2ck3_D ATP synthase subunit be 97.2 0.0052 1.8E-07 54.7 12.9 46 52-99 133-178 (482)
258 3tau_A Guanylate kinase, GMP k 97.2 0.00023 7.9E-09 56.3 3.8 27 72-98 6-32 (208)
259 3vaa_A Shikimate kinase, SK; s 97.2 0.00025 8.4E-09 55.6 3.9 28 71-98 22-49 (199)
260 1lvg_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 56.1 3.4 27 72-98 2-28 (198)
261 3pey_A ATP-dependent RNA helic 97.2 0.0015 5.2E-08 55.5 9.0 77 2-115 6-82 (395)
262 2v9p_A Replication protein E1; 97.2 0.00027 9.2E-09 59.6 4.1 29 70-98 122-150 (305)
263 1fx0_B ATP synthase beta chain 97.2 0.0006 2.1E-08 61.0 6.4 46 52-99 145-190 (498)
264 1knq_A Gluconate kinase; ALFA/ 97.1 0.00037 1.3E-08 53.2 4.2 27 72-98 6-32 (175)
265 4dzz_A Plasmid partitioning pr 97.1 0.0011 3.8E-08 51.6 6.9 71 76-152 3-87 (206)
266 2jeo_A Uridine-cytidine kinase 97.1 0.00037 1.3E-08 56.5 4.2 29 70-98 21-49 (245)
267 1gvn_B Zeta; postsegregational 97.1 0.00056 1.9E-08 57.1 5.3 36 72-116 31-66 (287)
268 3asz_A Uridine kinase; cytidin 97.1 0.00036 1.2E-08 54.9 3.9 27 72-98 4-30 (211)
269 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0012 4E-08 62.2 8.0 111 72-190 205-323 (758)
270 1nks_A Adenylate kinase; therm 97.1 0.00057 1.9E-08 52.5 4.9 35 75-115 2-36 (194)
271 3lnc_A Guanylate kinase, GMP k 97.1 0.00017 5.8E-09 57.8 1.8 28 71-98 24-52 (231)
272 3b85_A Phosphate starvation-in 97.0 0.00014 4.9E-09 57.9 1.0 27 71-97 19-45 (208)
273 2qor_A Guanylate kinase; phosp 97.0 0.00042 1.4E-08 54.5 3.7 28 71-98 9-36 (204)
274 1kht_A Adenylate kinase; phosp 97.0 0.00065 2.2E-08 52.2 4.8 25 74-98 3-27 (192)
275 1qhx_A CPT, protein (chloramph 97.0 0.00046 1.6E-08 52.6 3.8 25 74-98 3-27 (178)
276 2bdt_A BH3686; alpha-beta prot 97.0 0.00035 1.2E-08 54.0 3.2 23 74-96 2-24 (189)
277 1z6t_A APAF-1, apoptotic prote 97.0 0.002 6.8E-08 58.6 8.5 52 62-116 135-187 (591)
278 2gxq_A Heat resistant RNA depe 97.0 0.0019 6.5E-08 50.2 7.4 79 1-115 1-79 (207)
279 2qt1_A Nicotinamide riboside k 97.0 0.00047 1.6E-08 54.2 3.8 29 70-98 17-45 (207)
280 1kag_A SKI, shikimate kinase I 97.0 0.00044 1.5E-08 52.5 3.5 26 73-98 3-28 (173)
281 2p6r_A Afuhel308 helicase; pro 97.0 0.00016 5.4E-09 67.5 1.1 73 1-115 1-75 (702)
282 3vr4_D V-type sodium ATPase su 97.0 0.012 4E-07 52.2 12.9 47 51-99 130-176 (465)
283 3aez_A Pantothenate kinase; tr 97.0 0.00056 1.9E-08 57.8 4.3 43 71-117 87-129 (312)
284 1p9r_A General secretion pathw 97.0 0.001 3.6E-08 58.5 6.0 78 62-150 158-246 (418)
285 2plr_A DTMP kinase, probable t 97.0 0.0011 3.8E-08 51.7 5.6 27 73-99 3-29 (213)
286 3cm0_A Adenylate kinase; ATP-b 96.9 0.00055 1.9E-08 52.6 3.6 26 73-98 3-28 (186)
287 2p67_A LAO/AO transport system 96.9 0.0022 7.5E-08 54.7 7.7 40 71-116 53-92 (341)
288 3la6_A Tyrosine-protein kinase 96.9 0.0039 1.3E-07 51.9 9.0 38 74-117 92-130 (286)
289 3a00_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 53.1 3.4 25 74-98 1-25 (186)
290 2gza_A Type IV secretion syste 96.9 0.00049 1.7E-08 59.3 3.2 28 71-98 172-199 (361)
291 1svm_A Large T antigen; AAA+ f 96.9 0.00066 2.3E-08 58.9 4.0 29 70-98 165-193 (377)
292 3kb2_A SPBC2 prophage-derived 96.9 0.00072 2.5E-08 51.0 3.7 23 76-98 3-25 (173)
293 1ly1_A Polynucleotide kinase; 96.9 0.00066 2.2E-08 51.6 3.5 22 75-96 3-24 (181)
294 3upu_A ATP-dependent DNA helic 96.9 0.0043 1.5E-07 54.9 9.2 35 76-116 47-82 (459)
295 1y63_A LMAJ004144AAA protein; 96.8 0.00093 3.2E-08 51.6 4.2 27 71-97 7-33 (184)
296 3llm_A ATP-dependent RNA helic 96.8 0.0076 2.6E-07 48.2 9.7 43 72-115 74-116 (235)
297 1coo_A RNA polymerase alpha su 96.8 0.0011 3.7E-08 46.2 3.9 47 1-47 24-74 (98)
298 3igf_A ALL4481 protein; two-do 96.8 0.0022 7.6E-08 55.5 6.8 36 75-116 3-38 (374)
299 1sq5_A Pantothenate kinase; P- 96.8 0.0016 5.4E-08 54.8 5.7 41 71-116 77-118 (308)
300 3ney_A 55 kDa erythrocyte memb 96.8 0.00089 3E-08 52.9 3.8 27 72-98 17-43 (197)
301 3vr4_A V-type sodium ATPase ca 96.8 0.0023 7.8E-08 58.1 6.9 46 51-98 211-256 (600)
302 1m7g_A Adenylylsulfate kinase; 96.8 0.0011 3.7E-08 52.3 4.3 42 71-117 22-63 (211)
303 1tev_A UMP-CMP kinase; ploop, 96.8 0.00097 3.3E-08 51.3 3.9 25 74-98 3-27 (196)
304 3umf_A Adenylate kinase; rossm 96.8 0.0011 3.9E-08 53.0 4.3 31 69-99 24-54 (217)
305 3trf_A Shikimate kinase, SK; a 96.8 0.001 3.5E-08 51.1 3.8 25 74-98 5-29 (185)
306 2c95_A Adenylate kinase 1; tra 96.8 0.0011 3.6E-08 51.3 3.9 27 72-98 7-33 (196)
307 3iij_A Coilin-interacting nucl 96.8 0.0011 3.6E-08 50.8 3.9 27 72-98 9-35 (180)
308 1u0j_A DNA replication protein 96.7 0.0017 5.7E-08 53.7 5.1 89 10-98 2-128 (267)
309 3fe2_A Probable ATP-dependent 96.7 0.006 2.1E-07 48.9 8.4 78 2-115 30-109 (242)
310 2bbw_A Adenylate kinase 4, AK4 96.7 0.00095 3.3E-08 54.0 3.5 26 73-98 26-51 (246)
311 2pjz_A Hypothetical protein ST 96.7 0.0007 2.4E-08 55.8 2.7 27 71-98 28-54 (263)
312 3t61_A Gluconokinase; PSI-biol 96.7 0.0011 3.8E-08 51.8 3.7 25 74-98 18-42 (202)
313 2ze6_A Isopentenyl transferase 96.7 0.0011 3.7E-08 54.2 3.8 24 75-98 2-25 (253)
314 3sr0_A Adenylate kinase; phosp 96.7 0.0013 4.4E-08 52.3 4.1 30 76-116 2-31 (206)
315 3lw7_A Adenylate kinase relate 96.7 0.00089 3.1E-08 50.3 3.1 20 75-94 2-21 (179)
316 2wwf_A Thymidilate kinase, put 96.7 0.0015 5.2E-08 51.1 4.4 28 71-98 7-34 (212)
317 1nn5_A Similar to deoxythymidy 96.7 0.0013 4.5E-08 51.5 3.9 28 72-99 7-34 (215)
318 3pxg_A Negative regulator of g 96.7 0.0021 7E-08 57.3 5.6 71 73-147 200-274 (468)
319 1u9l_A Transcription elongatio 96.7 0.0033 1.1E-07 41.1 5.1 33 5-37 11-43 (70)
320 4eaq_A DTMP kinase, thymidylat 96.7 0.0026 8.8E-08 51.2 5.7 30 70-99 22-51 (229)
321 4e22_A Cytidylate kinase; P-lo 96.6 0.0012 4.2E-08 53.7 3.7 26 72-97 25-50 (252)
322 2axn_A 6-phosphofructo-2-kinas 96.6 0.011 3.8E-07 53.3 10.3 26 73-98 34-59 (520)
323 1aky_A Adenylate kinase; ATP:A 96.6 0.0014 4.8E-08 51.9 3.9 26 73-98 3-28 (220)
324 2i3b_A HCR-ntpase, human cance 96.6 0.0012 4.2E-08 51.6 3.5 25 74-98 1-25 (189)
325 3gqb_A V-type ATP synthase alp 96.6 0.0023 7.7E-08 57.9 5.6 46 51-98 200-245 (578)
326 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.2E-08 52.6 3.6 28 71-98 4-31 (227)
327 2vli_A Antibiotic resistance p 96.6 0.00098 3.4E-08 50.9 2.9 26 73-98 4-29 (183)
328 3mfy_A V-type ATP synthase alp 96.6 0.0017 5.9E-08 58.8 4.8 46 51-98 206-251 (588)
329 2cdn_A Adenylate kinase; phosp 96.6 0.0016 5.4E-08 50.8 4.1 27 72-98 18-44 (201)
330 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.2E-08 50.8 3.7 26 73-98 3-28 (204)
331 2p5t_B PEZT; postsegregational 96.6 0.0012 4.1E-08 53.8 3.2 38 71-117 29-66 (253)
332 2pbr_A DTMP kinase, thymidylat 96.6 0.0021 7E-08 49.4 4.4 23 76-98 2-24 (195)
333 2bwj_A Adenylate kinase 5; pho 96.6 0.0016 5.3E-08 50.4 3.7 26 73-98 11-36 (199)
334 4f92_B U5 small nuclear ribonu 96.5 0.0068 2.3E-07 62.0 9.1 36 1-37 726-762 (1724)
335 1hv8_A Putative ATP-dependent 96.5 0.0053 1.8E-07 51.6 7.2 76 1-115 6-81 (367)
336 1xjc_A MOBB protein homolog; s 96.5 0.0023 7.9E-08 49.2 4.4 25 75-99 5-29 (169)
337 1cke_A CK, MSSA, protein (cyti 96.5 0.002 6.7E-08 51.0 4.1 25 74-98 5-29 (227)
338 2c61_A A-type ATP synthase non 96.5 0.0016 5.4E-08 57.9 3.7 46 52-99 132-177 (469)
339 3kta_A Chromosome segregation 96.5 0.0019 6.6E-08 49.4 3.8 27 71-98 24-50 (182)
340 1np6_A Molybdopterin-guanine d 96.5 0.0027 9.3E-08 49.0 4.6 28 72-99 4-31 (174)
341 2iyv_A Shikimate kinase, SK; t 96.5 0.0017 5.9E-08 49.8 3.4 24 75-98 3-26 (184)
342 2z0h_A DTMP kinase, thymidylat 96.5 0.0026 8.8E-08 49.1 4.4 23 76-98 2-24 (197)
343 1via_A Shikimate kinase; struc 96.5 0.0018 6E-08 49.4 3.4 23 76-98 6-28 (175)
344 1cp2_A CP2, nitrogenase iron p 96.5 0.0032 1.1E-07 51.3 5.1 36 76-117 3-38 (269)
345 3be4_A Adenylate kinase; malar 96.4 0.002 6.7E-08 51.1 3.6 27 72-98 3-29 (217)
346 1ukz_A Uridylate kinase; trans 96.4 0.0024 8.2E-08 49.7 4.1 26 73-98 14-39 (203)
347 3tlx_A Adenylate kinase 2; str 96.4 0.0024 8.2E-08 51.7 4.2 27 72-98 27-53 (243)
348 2oap_1 GSPE-2, type II secreti 96.4 0.0015 5.1E-08 59.0 3.1 71 71-150 257-343 (511)
349 1zak_A Adenylate kinase; ATP:A 96.4 0.0021 7.3E-08 50.9 3.7 26 73-98 4-29 (222)
350 1odf_A YGR205W, hypothetical 3 96.4 0.0041 1.4E-07 51.9 5.5 29 71-99 28-56 (290)
351 1yrb_A ATP(GTP)binding protein 96.4 0.0054 1.8E-07 49.6 6.1 39 72-117 12-50 (262)
352 3p32_A Probable GTPase RV1496/ 96.4 0.0041 1.4E-07 53.2 5.6 39 73-117 78-116 (355)
353 1qf9_A UMP/CMP kinase, protein 96.4 0.0025 8.4E-08 48.9 3.8 25 74-98 6-30 (194)
354 2jaq_A Deoxyguanosine kinase; 96.4 0.0024 8.1E-08 49.5 3.6 23 76-98 2-24 (205)
355 2vp4_A Deoxynucleoside kinase; 96.4 0.0016 5.4E-08 52.2 2.7 28 70-97 16-43 (230)
356 3fb4_A Adenylate kinase; psych 96.3 0.0025 8.4E-08 50.2 3.7 23 76-98 2-24 (216)
357 3kjh_A CO dehydrogenase/acetyl 96.3 0.0028 9.7E-08 50.6 4.0 35 77-117 3-37 (254)
358 1u8z_A RAS-related protein RAL 96.3 0.038 1.3E-06 40.5 10.0 23 76-98 6-28 (168)
359 3fwy_A Light-independent proto 96.3 0.0037 1.3E-07 52.8 4.7 41 71-117 45-85 (314)
360 4b3f_X DNA-binding protein smu 96.3 0.0031 1.1E-07 58.3 4.6 37 73-115 204-240 (646)
361 2qmh_A HPR kinase/phosphorylas 96.3 0.0025 8.7E-08 50.4 3.4 26 73-98 33-58 (205)
362 1jjv_A Dephospho-COA kinase; P 96.3 0.0024 8.2E-08 49.9 3.3 22 75-96 3-24 (206)
363 2fz4_A DNA repair protein RAD2 96.3 0.016 5.6E-07 46.5 8.3 30 77-115 111-140 (237)
364 1vec_A ATP-dependent RNA helic 96.3 0.013 4.4E-07 45.4 7.5 76 1-115 3-78 (206)
365 1e6c_A Shikimate kinase; phosp 96.3 0.0026 8.9E-08 48.0 3.4 24 75-98 3-26 (173)
366 3dl0_A Adenylate kinase; phosp 96.3 0.0027 9.3E-08 50.0 3.6 23 76-98 2-24 (216)
367 1ihu_A Arsenical pump-driving 96.3 0.0025 8.7E-08 58.2 3.7 51 61-117 313-364 (589)
368 1ihu_A Arsenical pump-driving 96.3 0.0039 1.3E-07 57.0 4.9 39 73-117 7-45 (589)
369 3bfv_A CAPA1, CAPB2, membrane 96.2 0.0047 1.6E-07 50.9 5.0 39 73-117 81-120 (271)
370 3sfz_A APAF-1, apoptotic pepti 96.2 0.0094 3.2E-07 58.3 7.8 55 61-117 134-188 (1249)
371 1zuh_A Shikimate kinase; alpha 96.2 0.0033 1.1E-07 47.4 3.7 25 74-98 7-31 (168)
372 2afh_E Nitrogenase iron protei 96.2 0.0041 1.4E-07 51.4 4.4 37 75-117 3-39 (289)
373 3cr8_A Sulfate adenylyltranfer 96.2 0.003 1E-07 57.5 3.8 42 71-117 366-407 (552)
374 3nwj_A ATSK2; P loop, shikimat 96.2 0.0023 7.8E-08 52.4 2.7 28 71-98 42-72 (250)
375 2woj_A ATPase GET3; tail-ancho 96.2 0.0065 2.2E-07 52.1 5.7 49 61-117 7-57 (354)
376 2if2_A Dephospho-COA kinase; a 96.2 0.003 1E-07 49.2 3.3 21 76-96 3-23 (204)
377 3cio_A ETK, tyrosine-protein k 96.2 0.005 1.7E-07 51.5 4.8 39 73-117 103-142 (299)
378 1ex7_A Guanylate kinase; subst 96.2 0.0032 1.1E-07 49.2 3.4 24 75-98 2-25 (186)
379 4edh_A DTMP kinase, thymidylat 96.2 0.0067 2.3E-07 48.2 5.3 38 72-115 4-41 (213)
380 2yv5_A YJEQ protein; hydrolase 96.1 0.0031 1.1E-07 52.8 3.5 32 62-95 155-186 (302)
381 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.8E-08 51.4 1.2 24 76-99 2-25 (214)
382 2qag_B Septin-6, protein NEDD5 96.1 0.0031 1.1E-07 55.6 3.4 29 70-98 36-66 (427)
383 1ak2_A Adenylate kinase isoenz 96.1 0.0043 1.5E-07 49.6 4.0 26 73-98 15-40 (233)
384 3tqc_A Pantothenate kinase; bi 96.1 0.0068 2.3E-07 51.4 5.4 39 75-117 93-131 (321)
385 3m6a_A ATP-dependent protease 96.1 0.0036 1.2E-07 56.8 3.9 27 73-99 107-133 (543)
386 3eiq_A Eukaryotic initiation f 96.1 0.013 4.5E-07 50.2 7.3 74 3-115 42-115 (414)
387 2woo_A ATPase GET3; tail-ancho 96.1 0.0074 2.5E-07 51.1 5.6 39 73-117 18-56 (329)
388 2rcn_A Probable GTPase ENGC; Y 96.1 0.0047 1.6E-07 53.2 4.3 35 59-98 205-239 (358)
389 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0067 2.3E-07 52.4 5.3 38 72-115 33-70 (392)
390 3ea0_A ATPase, para family; al 96.1 0.0082 2.8E-07 47.9 5.5 38 74-117 4-43 (245)
391 3a8t_A Adenylate isopentenyltr 96.1 0.0033 1.1E-07 53.7 3.2 27 72-98 38-64 (339)
392 2pt5_A Shikimate kinase, SK; a 96.1 0.0044 1.5E-07 46.6 3.6 23 76-98 2-24 (168)
393 1uf9_A TT1252 protein; P-loop, 96.0 0.0047 1.6E-07 47.8 3.8 24 74-97 8-31 (203)
394 1lw7_A Transcriptional regulat 96.0 0.0038 1.3E-07 53.6 3.4 33 67-99 161-195 (365)
395 3r20_A Cytidylate kinase; stru 96.0 0.0046 1.6E-07 50.0 3.7 25 74-98 9-33 (233)
396 3io3_A DEHA2D07832P; chaperone 96.0 0.0092 3.2E-07 51.1 5.8 50 62-117 8-57 (348)
397 1a7j_A Phosphoribulokinase; tr 96.0 0.003 1E-07 52.7 2.6 39 73-117 4-42 (290)
398 3con_A GTPase NRAS; structural 96.0 0.042 1.4E-06 41.6 9.0 24 76-99 23-46 (190)
399 2xb4_A Adenylate kinase; ATP-b 95.9 0.005 1.7E-07 49.0 3.6 23 76-98 2-24 (223)
400 2a9k_A RAS-related protein RAL 95.9 0.04 1.4E-06 41.3 8.7 23 76-98 20-42 (187)
401 3fht_A ATP-dependent RNA helic 95.9 0.022 7.6E-07 48.6 8.0 77 2-115 26-102 (412)
402 2www_A Methylmalonic aciduria 95.9 0.0075 2.6E-07 51.6 4.9 27 72-98 72-98 (349)
403 1vht_A Dephospho-COA kinase; s 95.9 0.0054 1.8E-07 48.4 3.7 24 73-96 3-26 (218)
404 1q3t_A Cytidylate kinase; nucl 95.9 0.0062 2.1E-07 48.8 4.1 28 71-98 13-40 (236)
405 1hyq_A MIND, cell division inh 95.9 0.0074 2.5E-07 48.9 4.6 36 76-117 5-40 (263)
406 1uj2_A Uridine-cytidine kinase 95.9 0.0054 1.8E-07 49.7 3.7 43 74-117 22-64 (252)
407 3bc1_A RAS-related protein RAB 95.9 0.023 7.8E-07 43.0 7.1 23 76-98 13-35 (195)
408 1g3q_A MIND ATPase, cell divis 95.9 0.0074 2.5E-07 47.9 4.3 36 76-117 5-40 (237)
409 3fkq_A NTRC-like two-domain pr 95.8 0.0071 2.4E-07 52.1 4.4 40 72-117 141-181 (373)
410 1e4v_A Adenylate kinase; trans 95.8 0.0058 2E-07 48.1 3.5 23 76-98 2-24 (214)
411 3pxi_A Negative regulator of g 95.8 0.0096 3.3E-07 56.0 5.6 28 72-99 199-226 (758)
412 2r2a_A Uncharacterized protein 95.8 0.0062 2.1E-07 48.0 3.6 113 74-196 5-137 (199)
413 3dz8_A RAS-related protein RAB 95.8 0.067 2.3E-06 40.7 9.5 23 77-99 26-48 (191)
414 3d3q_A TRNA delta(2)-isopenten 95.8 0.0062 2.1E-07 52.0 3.7 24 75-98 8-31 (340)
415 1pui_A ENGB, probable GTP-bind 95.8 0.0029 9.8E-08 49.2 1.5 33 61-96 16-48 (210)
416 2ph1_A Nucleotide-binding prot 95.8 0.0083 2.9E-07 48.8 4.3 37 75-117 20-56 (262)
417 3ake_A Cytidylate kinase; CMP 95.8 0.007 2.4E-07 47.0 3.7 23 76-98 4-26 (208)
418 1ltq_A Polynucleotide kinase; 95.7 0.0064 2.2E-07 50.3 3.6 23 75-97 3-25 (301)
419 1z0f_A RAB14, member RAS oncog 95.7 0.051 1.7E-06 40.4 8.4 24 76-99 17-40 (179)
420 3crm_A TRNA delta(2)-isopenten 95.7 0.0066 2.2E-07 51.5 3.5 24 75-98 6-29 (323)
421 3cwq_A Para family chromosome 95.7 0.012 4.2E-07 46.3 5.0 64 76-151 3-78 (209)
422 3exa_A TRNA delta(2)-isopenten 95.7 0.0071 2.4E-07 51.1 3.7 25 74-98 3-27 (322)
423 1z06_A RAS-related protein RAB 95.7 0.05 1.7E-06 41.3 8.3 23 76-98 22-44 (189)
424 2oze_A ORF delta'; para, walke 95.7 0.0081 2.8E-07 49.7 4.0 38 74-117 34-74 (298)
425 1vt4_I APAF-1 related killer D 95.7 0.049 1.7E-06 53.2 9.8 41 73-116 149-189 (1221)
426 3q9l_A Septum site-determining 95.7 0.0095 3.2E-07 48.0 4.3 37 75-117 3-40 (260)
427 1u0l_A Probable GTPase ENGC; p 95.7 0.0042 1.4E-07 52.0 2.2 35 62-98 159-193 (301)
428 2r44_A Uncharacterized protein 95.7 0.0045 1.6E-07 52.0 2.4 25 74-98 46-70 (331)
429 4dsu_A GTPase KRAS, isoform 2B 95.7 0.042 1.4E-06 41.4 7.7 23 76-98 6-28 (189)
430 1t9h_A YLOQ, probable GTPase E 95.6 0.0016 5.5E-08 54.9 -0.5 33 63-97 164-196 (307)
431 3foz_A TRNA delta(2)-isopenten 95.6 0.0089 3E-07 50.4 4.0 25 74-98 10-34 (316)
432 1wcv_1 SOJ, segregation protei 95.6 0.0073 2.5E-07 49.0 3.4 38 74-117 6-44 (257)
433 3szr_A Interferon-induced GTP- 95.6 0.0066 2.3E-07 55.8 3.4 24 77-101 48-71 (608)
434 1t6n_A Probable ATP-dependent 95.6 0.043 1.5E-06 42.9 7.8 75 2-115 15-89 (220)
435 3k1j_A LON protease, ATP-depen 95.6 0.0092 3.1E-07 54.8 4.3 29 71-99 57-85 (604)
436 2v6i_A RNA helicase; membrane, 95.6 0.043 1.5E-06 48.1 8.5 37 73-115 1-38 (431)
437 1q0u_A Bstdead; DEAD protein, 95.6 0.022 7.5E-07 44.7 6.0 75 2-115 5-79 (219)
438 3tkl_A RAS-related protein RAB 95.6 0.027 9.2E-07 42.9 6.4 24 76-99 18-41 (196)
439 2grj_A Dephospho-COA kinase; T 95.5 0.0093 3.2E-07 46.6 3.6 25 73-97 11-35 (192)
440 3v9p_A DTMP kinase, thymidylat 95.5 0.0079 2.7E-07 48.4 3.2 30 70-99 21-50 (227)
441 3lv8_A DTMP kinase, thymidylat 95.5 0.012 4.2E-07 47.5 4.3 31 69-99 22-52 (236)
442 2f6r_A COA synthase, bifunctio 95.5 0.009 3.1E-07 49.4 3.6 23 74-96 75-97 (281)
443 1g8p_A Magnesium-chelatase 38 95.5 0.005 1.7E-07 51.9 2.0 23 77-99 48-70 (350)
444 3tqf_A HPR(Ser) kinase; transf 95.5 0.01 3.5E-07 45.9 3.5 24 74-97 16-39 (181)
445 2db3_A ATP-dependent RNA helic 95.5 0.028 9.6E-07 49.1 6.8 77 3-115 58-136 (434)
446 2bov_A RAla, RAS-related prote 95.4 0.074 2.5E-06 40.7 8.6 23 76-98 16-38 (206)
447 2pl3_A Probable ATP-dependent 95.4 0.031 1.1E-06 44.3 6.4 78 2-115 26-104 (236)
448 3sop_A Neuronal-specific septi 95.4 0.01 3.5E-07 48.9 3.6 24 76-99 4-27 (270)
449 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.013 4.4E-07 43.8 3.8 23 75-97 24-46 (149)
450 1byi_A Dethiobiotin synthase; 95.4 0.014 4.6E-07 46.0 4.2 33 77-115 5-37 (224)
451 2wsm_A Hydrogenase expression/ 95.4 0.022 7.4E-07 44.6 5.3 24 75-98 31-54 (221)
452 2f1r_A Molybdopterin-guanine d 95.4 0.0056 1.9E-07 47.0 1.7 25 75-99 3-27 (171)
453 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0096 3.3E-07 51.2 3.4 44 140-193 303-346 (365)
454 3vkw_A Replicase large subunit 95.3 0.016 5.4E-07 51.2 4.8 26 70-95 157-182 (446)
455 3euj_A Chromosome partition pr 95.3 0.011 3.6E-07 53.0 3.6 27 71-98 27-53 (483)
456 1tq4_A IIGP1, interferon-induc 95.3 0.0058 2E-07 53.6 1.9 23 74-96 69-91 (413)
457 3ber_A Probable ATP-dependent 95.3 0.044 1.5E-06 44.1 7.1 75 2-115 44-118 (249)
458 1s2m_A Putative ATP-dependent 95.3 0.034 1.2E-06 47.5 6.7 75 2-115 22-96 (400)
459 1qde_A EIF4A, translation init 95.3 0.037 1.3E-06 43.4 6.5 74 3-115 16-89 (224)
460 3ld9_A DTMP kinase, thymidylat 95.3 0.011 3.6E-07 47.5 3.3 28 72-99 19-46 (223)
461 1xti_A Probable ATP-dependent 95.3 0.11 3.7E-06 44.0 9.9 75 2-115 9-83 (391)
462 3hjn_A DTMP kinase, thymidylat 95.3 0.13 4.5E-06 40.1 9.5 34 76-115 2-35 (197)
463 1g41_A Heat shock protein HSLU 95.3 0.012 4.2E-07 52.0 3.9 24 76-99 52-75 (444)
464 2gk6_A Regulator of nonsense t 95.3 0.018 6.2E-07 53.0 5.1 37 74-115 195-231 (624)
465 3sqw_A ATP-dependent RNA helic 95.3 0.22 7.6E-06 45.0 12.4 43 73-115 59-102 (579)
466 2ocp_A DGK, deoxyguanosine kin 95.3 0.013 4.5E-07 46.9 3.8 25 74-98 2-26 (241)
467 2gj8_A MNME, tRNA modification 95.2 0.013 4.3E-07 44.4 3.4 25 73-97 3-27 (172)
468 2ga8_A Hypothetical 39.9 kDa p 95.2 0.013 4.5E-07 50.3 3.8 29 72-100 20-50 (359)
469 4tmk_A Protein (thymidylate ki 95.2 0.018 6.1E-07 45.8 4.3 27 73-99 2-28 (213)
470 2xau_A PRE-mRNA-splicing facto 95.2 0.079 2.7E-06 50.0 9.4 41 72-115 107-147 (773)
471 3fmp_B ATP-dependent RNA helic 95.2 0.047 1.6E-06 48.1 7.4 78 2-116 93-170 (479)
472 2oxc_A Probable ATP-dependent 95.2 0.05 1.7E-06 43.1 6.9 75 2-115 25-99 (230)
473 3eph_A TRNA isopentenyltransfe 95.1 0.015 5E-07 50.9 3.8 25 74-98 2-26 (409)
474 2iw3_A Elongation factor 3A; a 95.1 0.0063 2.2E-07 58.8 1.7 28 71-98 696-723 (986)
475 1oix_A RAS-related protein RAB 95.1 0.012 4E-07 45.4 2.9 23 76-98 31-53 (191)
476 2f9l_A RAB11B, member RAS onco 95.1 0.013 4.3E-07 45.3 3.1 23 76-98 7-29 (199)
477 1e69_A Chromosome segregation 95.1 0.013 4.3E-07 49.4 3.3 25 71-96 22-46 (322)
478 1x6v_B Bifunctional 3'-phospho 95.1 0.019 6.3E-07 53.0 4.5 39 73-117 51-89 (630)
479 3bor_A Human initiation factor 95.0 0.028 9.5E-07 44.9 5.1 74 3-115 32-105 (237)
480 2hf9_A Probable hydrogenase ni 95.0 0.029 9.8E-07 44.0 5.1 25 75-99 39-63 (226)
481 3k9g_A PF-32 protein; ssgcid, 95.0 0.022 7.4E-07 46.3 4.3 38 73-117 26-64 (267)
482 1w1w_A Structural maintenance 95.0 0.017 5.8E-07 50.6 3.9 28 71-98 23-50 (430)
483 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.0058 2E-07 54.9 0.9 27 72-98 39-65 (500)
484 2il1_A RAB12; G-protein, GDP, 95.0 0.063 2.2E-06 41.0 6.8 22 76-97 28-49 (192)
485 3i5x_A ATP-dependent RNA helic 94.9 0.2 6.7E-06 45.0 10.9 43 73-115 110-153 (563)
486 2o5v_A DNA replication and rep 94.9 0.015 5.2E-07 50.0 3.4 25 71-96 24-48 (359)
487 2xj4_A MIPZ; replication, cell 94.9 0.018 6.1E-07 47.5 3.7 37 76-118 6-43 (286)
488 4hlc_A DTMP kinase, thymidylat 94.9 0.036 1.2E-06 43.7 5.3 35 74-115 2-36 (205)
489 2wji_A Ferrous iron transport 94.9 0.016 5.4E-07 43.3 3.1 22 76-97 5-26 (165)
490 2hup_A RAS-related protein RAB 94.9 0.11 3.8E-06 40.0 8.1 23 76-98 31-53 (201)
491 3tmk_A Thymidylate kinase; pho 94.9 0.021 7.2E-07 45.5 3.9 28 72-99 3-30 (216)
492 1nij_A Hypothetical protein YJ 94.8 0.014 4.8E-07 49.1 2.9 25 74-98 4-28 (318)
493 2a5y_B CED-4; apoptosis; HET: 94.8 0.032 1.1E-06 50.4 5.4 40 73-116 151-192 (549)
494 2h92_A Cytidylate kinase; ross 94.8 0.019 6.6E-07 45.0 3.5 25 74-98 3-27 (219)
495 4akg_A Glutathione S-transfera 94.8 0.11 3.8E-06 55.3 9.8 92 74-183 1267-1371(2695)
496 2zej_A Dardarin, leucine-rich 94.7 0.015 5E-07 44.4 2.5 20 77-96 5-24 (184)
497 3hdt_A Putative kinase; struct 94.7 0.14 4.9E-06 40.8 8.5 26 74-99 14-39 (223)
498 2gks_A Bifunctional SAT/APS ki 94.7 0.023 7.8E-07 51.6 4.2 38 74-117 372-409 (546)
499 1e9r_A Conjugal transfer prote 94.7 0.024 8.1E-07 49.6 4.2 37 74-116 53-89 (437)
500 3pg5_A Uncharacterized protein 94.7 0.012 4.2E-07 50.4 2.1 36 76-117 4-39 (361)
No 1
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=6.9e-36 Score=257.10 Aligned_cols=196 Identities=38% Similarity=0.554 Sum_probs=126.6
Q ss_pred CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCcee
Q 036464 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARIT 57 (226)
Q Consensus 1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~ 57 (226)
+||++|| |++++++||+++||+|+++++.+++++|++ .+.+|.+++++. ....+++
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 90 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKER-MNVKKIS 90 (324)
T ss_dssp ------------------------------------------------------------CCCCHHHHHHHH-CSCCEEC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhh-ccCCccc
Confidence 4799999 999999999999999999999999998886 456778887654 6789999
Q ss_pred cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---------------
Q 036464 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------- 122 (226)
Q Consensus 58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------------- 122 (226)
||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.|.++++.+++|+||++|.....
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~ 170 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDID 170 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999888777777899999998842101
Q ss_pred ---------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 123 ---------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 123 ---------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
++...+..+..++++..++++|||||++++++.++. +...|++.+.++++.|+++++++|++
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~ 250 (324)
T 2z43_A 171 NVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA 250 (324)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 112234556666766358999999999999876542 35567778999999999999999999
Q ss_pred EEEeccccccCCC
Q 036464 185 LLEPNLATTANLA 197 (226)
Q Consensus 185 vi~~nq~~~~~~~ 197 (226)
||++||+++..+.
T Consensus 251 Vi~~nq~~~~~~~ 263 (324)
T 2z43_A 251 VIITNQVMARPDM 263 (324)
T ss_dssp EEEEEEC------
T ss_pred EEEEcceeecCCC
Confidence 9999999987654
No 2
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=7.5e-36 Score=258.80 Aligned_cols=195 Identities=30% Similarity=0.422 Sum_probs=127.1
Q ss_pred CCCCCC---CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464 2 EVSKLP---ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI 56 (226)
Q Consensus 2 ~~~~l~---l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i 56 (226)
||+.|+ |++.+++||+++||+|+++++.+++.+|.+ .+.+|.+++++. .+..++
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~i 104 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKR-KMVFHI 104 (343)
T ss_dssp ------------------------------------------------------------CCSEEHHHHHHHG-GGCCCB
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhh-ccccee
Confidence 788888 999999999999999999999999998876 456777887665 668899
Q ss_pred ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc---------------
Q 036464 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--------------- 121 (226)
Q Consensus 57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--------------- 121 (226)
+||++.||.+|+||+++|++++|+|+||+|||+||++++.++++|..+++.+++|+||++|....
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~ 184 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 184 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999988887777889999999885111
Q ss_pred ---------------hHHHHHHHHHHHHHhhC-CCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcC
Q 036464 122 ---------------TEQSAVINYLDKFVSEH-KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182 (226)
Q Consensus 122 ---------------~~~~~~l~~l~~~l~~~-~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~ 182 (226)
.+...++..+.+++.+. .++++|||||++++++.++. +...|++.+.++++.|+++++++|
T Consensus 185 ~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~ 264 (343)
T 1v5w_A 185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 264 (343)
T ss_dssp HHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11223344556667663 48999999999999876543 456677789999999999999999
Q ss_pred CEEEEeccccccCCC
Q 036464 183 LALLEPNLATTANLA 197 (226)
Q Consensus 183 ~~vi~~nq~~~~~~~ 197 (226)
++||++||+++..+.
T Consensus 265 ~~Vi~~nq~~~~~~~ 279 (343)
T 1v5w_A 265 VAVFVTNQMTADPGA 279 (343)
T ss_dssp CEEEEEECC------
T ss_pred CEEEEEeeceecCCC
Confidence 999999999987765
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=8.3e-35 Score=249.84 Aligned_cols=214 Identities=30% Similarity=0.457 Sum_probs=164.7
Q ss_pred CCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceec
Q 036464 2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITT 58 (226)
Q Consensus 2 ~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~T 58 (226)
||+.|+ +++.+++||+++||+|++|++..++.+|++ .+.+|.+++++. ....+++|
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~i~T 82 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQR-STVWKLST 82 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHH-TTCCEECC
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHh-ccCCeecC
Confidence 899999 999999999999999999999999999987 355666776544 66889999
Q ss_pred CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcccc---------ccCCCC-CeEEEEeccccCchH-----
Q 036464 59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV---------EFGGLG-GKAIYIGKCLGFYTE----- 123 (226)
Q Consensus 59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~---------~~~~~~-~~vlyi~~e~~~~~~----- 123 (226)
|++.||.+|+||+++|++++|+|+||+|||+||++++.++++|. +.++.+ ++|+||++|.....+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999987664 223232 799999988421111
Q ss_pred -------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHH
Q 036464 124 -------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175 (226)
Q Consensus 124 -------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~ 175 (226)
+...+..+.+.+++..++++|||||++.+++.++. +...|++.+.++++.|+
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~ 242 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLN 242 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 11233455666665358999999999999876543 35567778999999999
Q ss_pred HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
++++++|++||++||+++..+... ....+..|+..+...+|
T Consensus 243 ~la~~~~~~vi~~nq~~~~~~~~~-g~~~~~~g~~~~~~~~d 283 (322)
T 2i1q_A 243 KLADLFNCVVLVTNQVSAKPDAFF-GMAEQAIGGHIVGHAAT 283 (322)
T ss_dssp HHHHHTTCEEEEEECEECC--------CCEESSHHHHHHHCS
T ss_pred HHHHHhCCEEEEECceeecCCCCC-CCCcCCCCcHHHHhcCc
Confidence 999999999999999998765422 11234556554544444
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=2.1e-34 Score=253.83 Aligned_cols=194 Identities=29% Similarity=0.432 Sum_probs=156.6
Q ss_pred CCCCCC---CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464 2 EVSKLP---ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI 56 (226)
Q Consensus 2 ~~~~l~---l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i 56 (226)
||+.|+ |++.+++||+++||+|+++++.+++.+|++ .+.+|.++++++ ....++
T Consensus 82 ~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~~-~~~~~i 160 (400)
T 3lda_A 82 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRR-SELICL 160 (400)
T ss_dssp BGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHHH-HTSCEE
T ss_pred CHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHhhh-ccCCcc
Confidence 455555 999999999999999999999999999987 466778887765 678999
Q ss_pred ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc---------------
Q 036464 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--------------- 121 (226)
Q Consensus 57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--------------- 121 (226)
+||++.||++|+||+++|++++|+||||+|||||+++++...++|++.++.+++++||++|....
T Consensus 161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~ 240 (400)
T 3lda_A 161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 240 (400)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999988888889999999874100
Q ss_pred ---------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 122 ---------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 122 ---------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
.++...+..+.+.+... ++++|||||++++++.++. +...|++.+.++++.|+++++++|+
T Consensus 241 ~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gi 319 (400)
T 3lda_A 241 DDALNNVAYARAYNADHQLRLLDAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGV 319 (400)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHhhcEEEeccCChHHHHHHHHHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11122334445555554 7999999999998876554 3567888889999999999999999
Q ss_pred EEEEeccccccCCC
Q 036464 184 ALLEPNLATTANLA 197 (226)
Q Consensus 184 ~vi~~nq~~~~~~~ 197 (226)
+||++||++...++
T Consensus 320 tVIlv~Hv~~~~~g 333 (400)
T 3lda_A 320 AVVVTNQVVAQVDG 333 (400)
T ss_dssp EEEEEEEC------
T ss_pred EEEEEEeecccCCc
Confidence 99999999876655
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=2.9e-33 Score=243.08 Aligned_cols=195 Identities=33% Similarity=0.500 Sum_probs=160.4
Q ss_pred CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------------------chHhHHHHHHHhhcccCce
Q 036464 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQESLARI 56 (226)
Q Consensus 1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------------------~~~~a~~l~~~~~~~~~~i 56 (226)
+||++|| +++.+++||+++||+|+++++.+++.+|++ .+.+|.++++++ ....++
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 113 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKR-ATIGRI 113 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHH-HTCCEE
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhh-ccCCee
Confidence 4789999 999999999999999999999999999886 345778887765 568899
Q ss_pred ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC----------------
Q 036464 57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------- 120 (226)
Q Consensus 57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------------- 120 (226)
+||++.||.+|+||+++|++++|+||||+|||||+++++..++.|++.++.+++|+||+++...
T Consensus 114 sTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 114 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 193 (349)
T ss_dssp CCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH
T ss_pred cCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999988777666667899999986310
Q ss_pred --------------chHHHHHHHHHHHHHhhC----CCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHH
Q 036464 121 --------------YTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK 179 (226)
Q Consensus 121 --------------~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~ 179 (226)
..++...+..+..++.+. .++++|||||++++++.++. +...|++.+.++++.|+++++
T Consensus 194 ~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~ 273 (349)
T 1pzn_A 194 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 273 (349)
T ss_dssp HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 111223345556666652 47999999999999876543 456677788999999999999
Q ss_pred HcCCEEEEeccccccCC
Q 036464 180 KFSLALLEPNLATTANL 196 (226)
Q Consensus 180 ~~~~~vi~~nq~~~~~~ 196 (226)
++|++||++||.+..++
T Consensus 274 ~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 274 LYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HTTCEEEEEEECC----
T ss_pred HcCcEEEEEcccccccc
Confidence 99999999999987654
No 6
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.93 E-value=1.7e-25 Score=189.82 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=99.5
Q ss_pred ccCceecCchhHHHhhC----CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-------
Q 036464 52 SLARITTSCADLDNILG----GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------- 120 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~----GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~------- 120 (226)
...+++||+++||++|+ ||+++| +++|+||||+||||||+|++.+++. .+.+++|+|||+|...
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~----~g~g~~vlyId~E~s~~~~ra~~ 77 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMR----QYPDAVCLFYDSEFGITPAYLRS 77 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHH----HCTTCEEEEEESSCCCCHHHHHH
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHh----cCCCceEEEEeccchhhHHHHHH
Confidence 35789999999999999 999999 9999999999999999999999872 1237899999988411
Q ss_pred --------------chHHHHHHHHHHHH--HhhCCCceEEEEcCCchhhh-cCcCCh-H-------HHHHHHHHHHHHHH
Q 036464 121 --------------YTEQSAVINYLDKF--VSEHKDVKVVIIDSIAFHFR-HGFVDL-A-------LRTRVLSGIALKLM 175 (226)
Q Consensus 121 --------------~~~~~~~l~~l~~~--l~~~~~~~lvVIDsl~~l~~-~~~~~~-~-------~r~~~l~~~~~~L~ 175 (226)
..++.. +..++.+ +++ .++++|||||++++++ .+++.. . .+.+.+.+.++.|.
T Consensus 78 lGvd~d~llv~~~~~~E~~~-l~i~~~l~~i~~-~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~ 155 (333)
T 3io5_A 78 MGVDPERVIHTPVQSLEQLR-IDMVNQLDAIER-GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVT 155 (333)
T ss_dssp TTCCGGGEEEEECSBHHHHH-HHHHHHHHTCCT-TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHH
T ss_pred hCCCHHHeEEEcCCCHHHHH-HHHHHHHHHhhc-cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHH
Confidence 112210 1222222 333 4799999999999984 444321 1 25667888899999
Q ss_pred HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464 176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSR 210 (226)
Q Consensus 176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~ 210 (226)
++++++|++||+|||+++ ++.....|. ...|.+
T Consensus 156 ~~ak~~~i~vi~tNQV~k-~G~~fg~p~-~~GG~~ 188 (333)
T 3io5_A 156 PYFSTKNIPCIAINHTYE-TQEMFSKTV-MGGGTG 188 (333)
T ss_dssp HHHHHTTCEEEEEEEC-----------------CC
T ss_pred HHHHHhCCEEEEECCeee-cCcccCCCC-CCCcce
Confidence 999999999999999998 654333333 344444
No 7
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.92 E-value=2.9e-24 Score=175.80 Aligned_cols=145 Identities=31% Similarity=0.447 Sum_probs=107.5
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-------- 123 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~-------- 123 (226)
+..+++||++.||++|+||+++|++++|+||||+|||+|+.+++.++++|+.+++.+.+++|++++.....+
T Consensus 2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999988776666678899999987410111
Q ss_pred ----------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHH
Q 036464 124 ----------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 124 ----------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la 178 (226)
....+..+.+.+... ++++||||+++.+++..+. +..+|++.+.+++..|++++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~ 160 (243)
T 1n0w_A 82 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA 160 (243)
T ss_dssp TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcC-CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 111233455555554 7999999999988765432 22455666889999999999
Q ss_pred HHcCCEEEEeccccccCCC
Q 036464 179 KKFSLALLEPNLATTANLA 197 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~~~~~ 197 (226)
+++|++||++||..+..+.
T Consensus 161 ~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 161 DEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp HHHCCEEEEEC--------
T ss_pred HHcCCEEEEEeeeeecCCC
Confidence 9999999999999887654
No 8
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.91 E-value=1.4e-24 Score=187.08 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=119.0
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------- 119 (226)
....+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|+.
T Consensus 24 ~~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 24 LEVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMSAEQLALRALSD 96 (338)
T ss_dssp TCCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSCHHHHHHHHHHH
T ss_pred CCcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCCHHHHHHHHHHH
Confidence 35789999999999999 69999999999999999999999999999883 6789999998850
Q ss_pred -------------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCCh
Q 036464 120 -------------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL 160 (226)
Q Consensus 120 -------------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~ 160 (226)
...++. .+...+.++.++++++++||||+++.+..... .
T Consensus 97 ~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~--~ 174 (338)
T 4a1f_A 97 LTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA--T 174 (338)
T ss_dssp HHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH--H
T ss_pred hhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC--C
Confidence 000000 01122333333433799999999996643221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464 161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA 212 (226)
Q Consensus 161 ~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~ 212 (226)
..|.+++.++++.|+.+|++++|+||+++|+++..+. .+.+.++|+||++..
T Consensus 175 ~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~Ieq 230 (338)
T 4a1f_A 175 KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQ 230 (338)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECC
T ss_pred CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhh
Confidence 3566778999999999999999999999999987653 477889999999754
No 9
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.91 E-value=1.1e-23 Score=180.27 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=115.8
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------- 124 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~------- 124 (226)
...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|+ ..++
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECCC--CHHHHHHHHHH
Confidence 4678999999999999 89999999999999999999999999999873 458999999874 1000
Q ss_pred ----------------H-------------------------------HHHHHHHHHHhhCCCce--EEEEcCCchhhhc
Q 036464 125 ----------------S-------------------------------AVINYLDKFVSEHKDVK--VVIIDSIAFHFRH 155 (226)
Q Consensus 125 ----------------~-------------------------------~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~ 155 (226)
+ .+...+.++.++. +++ +||||+++.+...
T Consensus 118 ~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~-~~~~~lVVID~l~~l~~~ 196 (315)
T 3bh0_A 118 TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEPA 196 (315)
T ss_dssp HHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTS-SSCCEEEEEECGGGSBCS
T ss_pred HHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCeEEEEeCchhcCCC
Confidence 0 1112233333333 678 9999999976532
Q ss_pred CcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464 156 GFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV 213 (226)
Q Consensus 156 ~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~ 213 (226)
. ....|.+.+.++++.|+++|+++|++||+++|+++..+. .+.+.+++.||+....
T Consensus 197 ~--~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~ 256 (315)
T 3bh0_A 197 K--ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQD 256 (315)
T ss_dssp C--TTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHH
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhh
Confidence 2 223467789999999999999999999999999976653 3556678888876543
No 10
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.90 E-value=3.7e-24 Score=175.68 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=102.6
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------- 119 (226)
++.++|+||++.||++|+||+++|++++|+|+||+|||+||+|++.+.+. +.+.+|+|++.|..
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~-----~~~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-----EYGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH-----HHCCCEEEEESSSCHHHHHHHHHTT
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCceeecccCCHHHHHHHHHHc
Confidence 56889999999999999999999999999999999999999999988653 34678999997740
Q ss_pred --Cch--------------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHH
Q 036464 120 --FYT--------------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTR 165 (226)
Q Consensus 120 --~~~--------------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~ 165 (226)
... .....++.+...+... +++++|||+++.+..... +.+
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vviD~~~~l~~~~~-----~~~ 155 (251)
T 2zts_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLE-----EER 155 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSS-----SGG
T ss_pred CCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhc-CCcEEEEEcHHHHhhhcc-----ChH
Confidence 000 0011234455556554 789999999997765421 233
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 166 VLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 166 ~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
.+.+++..|+++++++|+++++++|+.+.
T Consensus 156 ~~~~~~~~L~~~a~~~~i~vi~~~q~~~~ 184 (251)
T 2zts_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 45678899999999999999999998753
No 11
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.90 E-value=2e-23 Score=181.07 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=116.0
Q ss_pred cCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---------
Q 036464 53 LARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------- 122 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------- 122 (226)
..+++||++.||++|+ ||+++|++++|+||||+||||||++++..++ ..+++|+||++|.....
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~------~~gg~VlyId~E~s~~~~ra~rlgv~ 112 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ------KMGGVAAFIDAEHALDPVYAKNLGVD 112 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHHTCC
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEecccccchHHHHHcCCc
Confidence 6889999999999999 9999999999999999999999999999987 35788999998741110
Q ss_pred ----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHcCCEE
Q 036464 123 ----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKFSLAL 185 (226)
Q Consensus 123 ----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~~~~v 185 (226)
..-..+..+..++.. .+++++||||+++++. .++.. ...+.+.+.++++.|++++++++++|
T Consensus 113 ~~~l~i~~~~~~e~~l~~~~~l~~~-~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tV 191 (356)
T 3hr8_A 113 LKSLLISQPDHGEQALEIVDELVRS-GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVV 191 (356)
T ss_dssp GGGCEEECCSSHHHHHHHHHHHHHT-SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEE
T ss_pred hhhhhhhhccCHHHHHHHHHHHhhh-cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 001223445555544 4789999999998875 33321 11245668889999999999999999
Q ss_pred EEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 186 LEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 186 i~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
|++||++++.+.....+ ....|.......++
T Consensus 192 I~inqv~~k~g~~fg~p-~~~~GG~~l~h~~~ 222 (356)
T 3hr8_A 192 IFTNQIRMKIGVMFGSP-ETTTGGLALKFYAT 222 (356)
T ss_dssp EEEEESSSCSSSSSCSC-SSCTHHHHHHHHCS
T ss_pred EEEeeeeeccccccCCc-ccCCCcchhhhhCc
Confidence 99999987766533222 33455554444444
No 12
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.89 E-value=2.4e-23 Score=185.95 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=114.7
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------- 119 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------- 119 (226)
..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. ..+.+|+||+.|+.
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-----~~g~~vl~~slE~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-----KEGVGVGIYSLEMPAAQLTLRMMCSEA 253 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCeEEEEECCCCHHHHHHHHHHHHc
Confidence 578999999999999 89999999999999999999999999999873 24679999998740
Q ss_pred -----C------chHH--------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcC-cCChH
Q 036464 120 -----F------YTEQ--------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG-FVDLA 161 (226)
Q Consensus 120 -----~------~~~~--------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~-~~~~~ 161 (226)
. ..+. ..+...+.++..+. ++++||||+++.+.... .....
T Consensus 254 ~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~-~~~lIvID~l~~~~~~~~~~~~~ 332 (444)
T 2q6t_A 254 RIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQN-QVGLIIIDYLQLMSGPGSGKSGE 332 (444)
T ss_dssp TCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHS-CCCEEEEECGGGCBCC-------
T ss_pred CCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEcChhhcCCCcCCCCCC
Confidence 0 0000 01122334444444 79999999999765320 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC----CCcCCcCCCCchhHH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE----SCLTCLRDSGSRKAV 213 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~----~~~~~~~~sg~~~~~ 213 (226)
.|.+.+.++++.|+++|+++|++||+++|+++..+.. +.+.+++.||+....
T Consensus 333 ~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~ 388 (444)
T 2q6t_A 333 NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD 388 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence 5778899999999999999999999999999866543 567778888886553
No 13
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.89 E-value=6.9e-23 Score=178.51 Aligned_cols=139 Identities=24% Similarity=0.298 Sum_probs=103.6
Q ss_pred ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------
Q 036464 52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-------- 122 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~-------- 122 (226)
...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++ ..+++|+||++|.....
T Consensus 51 ~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~------~~g~~vlyi~~E~s~~~~~a~~~g~ 124 (366)
T 1xp8_A 51 DVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ------KAGGTCAFIDAEHALDPVYARALGV 124 (366)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred cCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH------HCCCeEEEEECCCChhHHHHHHcCC
Confidence 46789999999999999 9999999999999999999999999999987 35789999998841100
Q ss_pred -----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCCh-H-----HHHHHHHHHHHHHHHHHHHcCCE
Q 036464 123 -----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVDL-A-----LRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 123 -----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~~-~-----~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
..-..+..++.++++ .++++|||||++.++. .+++.. . .+.+.+.++++.|+.++++++++
T Consensus 125 d~~~l~i~~~~~~e~~l~~l~~l~~~-~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~ 203 (366)
T 1xp8_A 125 NTDELLVSQPDNGEQALEIMELLVRS-GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTA 203 (366)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHTT-TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CHHHceeecCCcHHHHHHHHHHHHhc-CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCE
Confidence 001223444555544 4799999999998873 333211 1 23456889999999999999999
Q ss_pred EEEeccccccCCC
Q 036464 185 LLEPNLATTANLA 197 (226)
Q Consensus 185 vi~~nq~~~~~~~ 197 (226)
||++||+++..+.
T Consensus 204 VI~~nq~~~~~~~ 216 (366)
T 1xp8_A 204 AIFINQVREKIGV 216 (366)
T ss_dssp EEEEEEC------
T ss_pred EEEEEecccccCc
Confidence 9999999987754
No 14
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.89 E-value=4.5e-22 Score=161.39 Aligned_cols=143 Identities=36% Similarity=0.550 Sum_probs=111.8
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc----------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY---------- 121 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~---------- 121 (226)
+.++++||++.||++++||+++|+++.|.||||+|||||+..++.....|+..+..+++++|++.+....
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~ 82 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN 82 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998887766666788999999763100
Q ss_pred --------------------hHHHHHHHHHHHHHh----hCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHH
Q 036464 122 --------------------TEQSAVINYLDKFVS----EHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKL 174 (226)
Q Consensus 122 --------------------~~~~~~l~~l~~~l~----~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L 174 (226)
.++...+..+...+. ...+++++|+|++++.++..... ...|++.+.+++..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 83 RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp TTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 111112334444444 13489999999999988765443 455666678899999
Q ss_pred HHHHHHcCCEEEEecccccc
Q 036464 175 MNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 175 ~~la~~~~~~vi~~nq~~~~ 194 (226)
+++++++|++||+++|..+.
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHHTCEEEEEEECC--
T ss_pred HHHHHHCCCeEEEEeecccC
Confidence 99999999999999998775
No 15
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.89 E-value=1.2e-22 Score=181.26 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=116.8
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-----------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF----------- 120 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~----------- 120 (226)
...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. .+.+|+||+.|+..
T Consensus 176 ~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~------~g~~vl~fSlEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 176 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH------TTCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH------cCCEEEEEECCCCHHHHHHHHHHHH
Confidence 3578999999999999 69999999999999999999999999999983 47899999988510
Q ss_pred --------------c-hHH---H-----------------------HHHHHHHHHHhhCCCce--EEEEcCCchhhhcCc
Q 036464 121 --------------Y-TEQ---S-----------------------AVINYLDKFVSEHKDVK--VVIIDSIAFHFRHGF 157 (226)
Q Consensus 121 --------------~-~~~---~-----------------------~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~~~ 157 (226)
. .++ + .+...+.++.++. +++ +||||+++.+.....
T Consensus 249 ~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~-~~~~~lIVID~Lq~~~~~~~ 327 (444)
T 3bgw_A 249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEPAKA 327 (444)
T ss_dssp SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHS-CSSCEEEEEECSTTSBCSCS
T ss_pred cCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEecHHhccCCCC
Confidence 0 000 0 1122233444444 789 999999997653321
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA 212 (226)
Q Consensus 158 ~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~ 212 (226)
...|.+.+.++++.|+.+|+++|++||+++|+++..+. .+.+.+++.||++..
T Consensus 328 --~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq 384 (444)
T 3bgw_A 328 --NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQ 384 (444)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHh
Confidence 13477889999999999999999999999999876543 366778899998654
No 16
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.89 E-value=7.3e-23 Score=177.84 Aligned_cols=139 Identities=24% Similarity=0.265 Sum_probs=101.6
Q ss_pred ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-------
Q 036464 52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE------- 123 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~------- 123 (226)
...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++ ..+.+|+||++|......
T Consensus 40 ~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~------~~g~~vlyid~E~s~~~~~a~~~g~ 113 (356)
T 1u94_A 40 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLGV 113 (356)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred cCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCCCccHHHHHHcCC
Confidence 46789999999999999 9999999999999999999999999999987 357799999987411100
Q ss_pred ------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC-hH-----HHHHHHHHHHHHHHHHHHHcCCE
Q 036464 124 ------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD-LA-----LRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 124 ------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~-~~-----~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
.-.....+..++++. ++++|||||++.++. .+++. .. .+.+.+.++++.|+.+++++|++
T Consensus 114 ~~~~l~i~~~~~~e~~~~~~~~l~~~~-~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~ 192 (356)
T 1u94_A 114 DIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 192 (356)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ChhheeeeCCCCHHHHHHHHHHHHhcc-CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 011233344444443 799999999998873 22211 00 22346788999999999999999
Q ss_pred EEEeccccccCCC
Q 036464 185 LLEPNLATTANLA 197 (226)
Q Consensus 185 vi~~nq~~~~~~~ 197 (226)
||++||+++.++.
T Consensus 193 VI~~nq~~~~~~~ 205 (356)
T 1u94_A 193 LIFINQIRMKIGV 205 (356)
T ss_dssp EEEEEC-------
T ss_pred EEEEeccccccCc
Confidence 9999999987654
No 17
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.88 E-value=1.4e-22 Score=175.64 Aligned_cols=139 Identities=24% Similarity=0.299 Sum_probs=103.2
Q ss_pred ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-------
Q 036464 52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE------- 123 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~------- 123 (226)
...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++ ..+++|+||++|......
T Consensus 38 ~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~------~~g~~vlyi~~E~~~~~~~a~~lG~ 111 (349)
T 2zr9_A 38 PISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGIAAFIDAEHALDPEYAKKLGV 111 (349)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred cCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCCCcCHHHHHHcCC
Confidence 46789999999999999 9999999999999999999999999999987 357899999987411100
Q ss_pred ------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC-h--H---HHHHHHHHHHHHHHHHHHHcCCE
Q 036464 124 ------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD-L--A---LRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 124 ------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~-~--~---~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
....+..+..++.+ .++++|||||+++++. .+++. . . .+.+.+.++++.|+.+++++|++
T Consensus 112 ~~~~l~i~~~~~~e~~l~~~~~l~~~-~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~t 190 (349)
T 2zr9_A 112 DTDSLLVSQPDTGEQALEIADMLVRS-GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTT 190 (349)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHTT-TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CHHHeEEecCCCHHHHHHHHHHHHhc-CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCE
Confidence 01123334444444 4799999999998873 22211 0 0 23346788899999999999999
Q ss_pred EEEeccccccCCC
Q 036464 185 LLEPNLATTANLA 197 (226)
Q Consensus 185 vi~~nq~~~~~~~ 197 (226)
||++||++++.+.
T Consensus 191 VI~inh~~~~~~~ 203 (349)
T 2zr9_A 191 AIFINELREKIGV 203 (349)
T ss_dssp EEEEEECC-----
T ss_pred EEEEeccccccCc
Confidence 9999999987654
No 18
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.88 E-value=6.4e-22 Score=179.19 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=113.9
Q ss_pred cccCceec-CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464 51 ESLARITT-SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------- 119 (226)
Q Consensus 51 ~~~~~i~T-g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------- 119 (226)
....+++| |++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. ..+.+|+|++.|+.
T Consensus 219 ~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~-----~~g~~vl~~s~E~s~~~l~~r~~~ 292 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGT-----AMGKKVGLAMLEESVEETAEDLIG 292 (503)
T ss_dssp SCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT-----TSCCCEEEEESSSCHHHHHHHHHH
T ss_pred cccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHH-----hcCCcEEEEeccCCHHHHHHHHHH
Confidence 45778999 999999999 69999999999999999999999999999983 22789999998841
Q ss_pred -----CchH-------------------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc
Q 036464 120 -----FYTE-------------------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157 (226)
Q Consensus 120 -----~~~~-------------------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~ 157 (226)
...+ ...+...+.++.++. ++++||||+++.+....
T Consensus 293 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~-~~~lvVID~l~~l~~~~- 370 (503)
T 1q57_A 293 LHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGL-GCDVIILDHISIVVSAS- 370 (503)
T ss_dssp HHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTT-CCSEEEEECTTCCCSCC-
T ss_pred HHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhc-CCCEEEEccchhcCCCC-
Confidence 0000 001122233333343 79999999999764321
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC--------CCCcCCcCCCCchhH
Q 036464 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA--------ESCLTCLRDSGSRKA 212 (226)
Q Consensus 158 ~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~--------~~~~~~~~~sg~~~~ 212 (226)
....+.+.+.++++.|+++|+++|++||+++|+++ .+. .+.+.+++.||++..
T Consensus 371 -~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~ 431 (503)
T 1q57_A 371 -GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQ 431 (503)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhe
Confidence 11246778999999999999999999999999998 322 244567777777554
No 19
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.88 E-value=2.3e-22 Score=180.06 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=114.7
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-----------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF----------- 120 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~----------- 120 (226)
...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. ..+.+|+|++.|+..
T Consensus 182 ~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-----~~g~~Vl~~s~E~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 182 EITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-----KTNENVAIFSLEMSAQQLVMRMLCAE 255 (454)
T ss_dssp CCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-----HSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHH
Confidence 3578999999999999 89999999999999999999999999999873 135689999987410
Q ss_pred -------------chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464 121 -------------YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161 (226)
Q Consensus 121 -------------~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~ 161 (226)
..+.. .....+.++..+ .++++||||+++.+..... ...
T Consensus 256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~-~~~~livID~l~~~~~~~~-~~~ 333 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE-SGLGMIVIDYLQLIQGSGR-SKE 333 (454)
T ss_dssp HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT-TCCCEEEEECGGGSCCSCC----
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEccHHHhccCCC-CCC
Confidence 00000 001122223333 3799999999998764321 123
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC----CCcCCcCCCCchhH
Q 036464 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE----SCLTCLRDSGSRKA 212 (226)
Q Consensus 162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~----~~~~~~~~sg~~~~ 212 (226)
.+.+.+.++++.|+++|+++|++||+++|+++..+.. +.+.+++.||+...
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~ 388 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQ 388 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHh
Confidence 4677889999999999999999999999999877653 55667888888654
No 20
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.87 E-value=7.8e-22 Score=158.99 Aligned_cols=147 Identities=26% Similarity=0.311 Sum_probs=106.7
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH---------
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--------- 125 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--------- 125 (226)
+++||++.||++++||+++|++++|+|+||+|||+|+.+++. . .+++|+|++.+.....+.+
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-------~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-------SGKKVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-------HCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-------cCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999999999999999999999998 2 3679999998741111110
Q ss_pred ---------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 126 ---------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 126 ---------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
..+..+..++.+ ++++||||+++++++.... ...+.+.+.++++.|++++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~lliiD~~~~~l~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~ 148 (220)
T 2cvh_A 72 NPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS--NFALVVVDSITAHYRAEEN-RSGLIAELSRQLQVLLWIARKHNIP 148 (220)
T ss_dssp CHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT--TEEEEEEECCCCCTTGGGG-SSTTHHHHHHHHHHHHHHHHHHTCC
T ss_pred ChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc--CCCEEEEcCcHHHhhhcCc-hHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 112222223322 5999999999987654321 1124567788999999999999999
Q ss_pred EEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 185 LLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 185 vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
||+++|..+..+.. ..+..|+......||
T Consensus 149 vi~~~h~~~~~~~~----~~~p~~~~~~~~~~d 177 (220)
T 2cvh_A 149 VIVINQVHFDSRTE----MTKPVAEQTLGYRCK 177 (220)
T ss_dssp EEEEECSSSSCTTS----SCCSCCCHHHHHTSS
T ss_pred EEEEeeEEEcCCCC----ccccCCCcceeecCc
Confidence 99999998765532 344455554444444
No 21
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.85 E-value=6e-21 Score=192.34 Aligned_cols=156 Identities=23% Similarity=0.198 Sum_probs=117.6
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE------ 123 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~------ 123 (226)
.+..+++||+++||++++ ||+++|++++|+|+||+|||+||+++|.+++. .+++|+||++|......
T Consensus 708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~------~g~~VlyiS~Ees~~ql~A~rlG 781 (2050)
T 3cmu_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLG 781 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHHHHHTT
T ss_pred cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECCCcHHHHHHHHcC
Confidence 356889999999999998 79999999999999999999999999999983 56789999998411110
Q ss_pred -------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcC--------ChHHHHHHHHHHHHHHHHHHHHc
Q 036464 124 -------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFV--------DLALRTRVLSGIALKLMNLAKKF 181 (226)
Q Consensus 124 -------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~--------~~~~r~~~l~~~~~~L~~la~~~ 181 (226)
.......++++..+. ++++|||||++.+++ .++. ++..| ++.++++.|+++|+++
T Consensus 782 ~~~~~l~i~~~~~i~~i~~~~r~l~~~~-~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~R--eis~ilr~Lk~lAke~ 858 (2050)
T 3cmu_A 782 VDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGNLKQS 858 (2050)
T ss_dssp CCTTTCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHH--HHHHHHHHHHHHHHTT
T ss_pred CCccceEEecCCCHHHHHHHHHHHhhcc-CCCEEEEcchhhhcccccccCCCCchhhHHHHH--HHHHHHHHHHHHHHHh
Confidence 011233344444444 789999999998876 2211 22233 4889999999999999
Q ss_pred CCEEEEeccccccCCCCCCcCCcCCCCchhHHHHH
Q 036464 182 SLALLEPNLATTANLAESCLTCLRDSGSRKAVAAA 216 (226)
Q Consensus 182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~ 216 (226)
|++||++||+++.++..... ....+|...+.+.+
T Consensus 859 ~v~VI~l~Qv~r~~e~~fgd-p~~p~GG~~l~h~a 892 (2050)
T 3cmu_A 859 NTLLIFINQIRMKIGVMFGN-PETTTGGNALKFYA 892 (2050)
T ss_dssp TCEEEEEECCEECTTCCSSC-CEECSSHHHHHHHE
T ss_pred CCEEEEeccccccchhhcCC-CccccCCceeeeee
Confidence 99999999999998864322 35556665555444
No 22
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.84 E-value=1.9e-20 Score=153.29 Aligned_cols=127 Identities=25% Similarity=0.325 Sum_probs=97.5
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------C
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------F 120 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~ 120 (226)
.+++||++.||++|+||+++|++++|+|+||+|||+|+++++...+ ..+++|+|++.|.. .
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~------~~~~~v~~~~~e~~~~~~~~~~~~~g~~ 76 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL------KMGEPGIYVALEEHPVQVRQNMAQFGWD 76 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEESSSCHHHHHHHHHTTTCC
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEccCCHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999999999999999887 35789999997730 0
Q ss_pred c---------------------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHH
Q 036464 121 Y---------------------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL 167 (226)
Q Consensus 121 ~---------------------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l 167 (226)
. .+.......+.+.+++. ++++||||+++.+... +.. ..
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~vviD~~~~l~~~---~~~----~~ 148 (247)
T 2dr3_A 77 VKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDI-NAKRVVVDSVTTLYIN---KPA----MA 148 (247)
T ss_dssp CHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHH-TCCEEEEETSGGGTTT---CGG----GH
T ss_pred HHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHh-CCCEEEECCchHhhcC---CHH----HH
Confidence 0 00112244555555554 6899999999987632 211 23
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 168 SGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 168 ~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
.+++..|.++++++|++||+++|.++.
T Consensus 149 ~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 149 RSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 356778888999999999999999874
No 23
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.84 E-value=1.5e-20 Score=189.49 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=107.0
Q ss_pred HHHHHHhhcccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc
Q 036464 43 WDMLQEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY 121 (226)
Q Consensus 43 ~~l~~~~~~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~ 121 (226)
++|+++......+++||++.||.+|+ ||+|+|++++|+|+||+|||+||+|++.+.+ ..+.+|+||++|....
T Consensus 2 ~~l~~~~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~------~~Ge~vlYI~tEes~~ 75 (2050)
T 3cmu_A 2 AHMGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALD 75 (2050)
T ss_dssp ----------CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEECTTSCCC
T ss_pred cchhhhhccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhh------ccCCceEEEEccCcch
Confidence 35566655667899999999999998 9999999999999999999999999999988 4678999999873100
Q ss_pred ------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc-------CChHHHHHHHHHHHHHHHH
Q 036464 122 ------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF-------VDLALRTRVLSGIALKLMN 176 (226)
Q Consensus 122 ------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~-------~~~~~r~~~l~~~~~~L~~ 176 (226)
+...+.+..+...+.+..++++|||||++++++... .....+.+.+..++..|++
T Consensus 76 ~~ra~~lG~dl~~i~v~~p~~~e~ll~il~~L~~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~ 155 (2050)
T 3cmu_A 76 PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 155 (2050)
T ss_dssp HHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhHHhhhccCcccceecCCCcHHHHHHHHHHHHhccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHH
Confidence 000111122222333334799999999999886421 1223455678899999999
Q ss_pred HHHHcCCEEEEeccccccCC
Q 036464 177 LAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 177 la~~~~~~vi~~nq~~~~~~ 196 (226)
+++++|++||+|||++...+
T Consensus 156 ~ak~~gitVVlTNQv~~~~g 175 (2050)
T 3cmu_A 156 NLKQSNTLLIFINQIRMKIG 175 (2050)
T ss_dssp HHHTTTCEEEEEECCEECTT
T ss_pred HHHHhCCeEEEEEecccccc
Confidence 99999999999999987654
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.83 E-value=2.6e-20 Score=186.00 Aligned_cols=159 Identities=23% Similarity=0.226 Sum_probs=117.6
Q ss_pred cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch-------
Q 036464 51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT------- 122 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~------- 122 (226)
....+++||++.||.+|+ ||+++|++++|+|+||+|||+||+|++.+++ ..+++|+||++|.....
T Consensus 359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~------~~G~~vlyis~E~s~~~~~a~~lG 432 (1706)
T 3cmw_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLG 432 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECTTSCCCHHHHHHTT
T ss_pred ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH------HhCCCeEEEEccCchHHHHHHHcC
Confidence 357899999999999999 9999999999999999999999999999998 36789999998851100
Q ss_pred ------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcC----C--hHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 123 ------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFV----D--LALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 123 ------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~----~--~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
..-..+..+..++++. ++++|||||+++++. .+.+ + ...+.+.+.++++.|+.+++++|+
T Consensus 433 vd~~~L~i~~~~~~e~~l~~l~~lv~~~-~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v 511 (1706)
T 3cmw_A 433 VDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 511 (1706)
T ss_dssp CCGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHeEEcCCCCHHHHHHHHHHHHHhc-CCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 0011234455555554 899999999998873 2111 1 113556788999999999999999
Q ss_pred EEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 184 ALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 184 ~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
+||++||+++.++.... +..+..|+......+|
T Consensus 512 ~VI~inQl~~~vg~~fg-~~~~p~gg~ale~~AD 544 (1706)
T 3cmw_A 512 LLIFINQIRMKIGVMFG-NPETTTGGNALKFYAS 544 (1706)
T ss_dssp EEEEEECEEECTTCCSS-CCEEESSCSHHHHHEE
T ss_pred EEEEEeecccccccccC-CCccCCCCcceeeeCC
Confidence 99999999998765321 2233444444444444
No 25
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.81 E-value=5.6e-20 Score=183.62 Aligned_cols=158 Identities=23% Similarity=0.228 Sum_probs=117.6
Q ss_pred ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------
Q 036464 52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-------- 122 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~-------- 122 (226)
...+++||+++||++|+ ||+++|++++|+|+||+|||+|+++++.+++ ..+++|+||+.|.....
T Consensus 709 ~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa------~~g~~VlyiS~Ees~~ql~A~~lGv 782 (1706)
T 3cmw_A 709 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLGV 782 (1706)
T ss_dssp SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECTTSCCCHHHHHHTTC
T ss_pred cccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH------HcCCCeEEEeccchHHHHHHHHcCC
Confidence 46899999999999999 9999999999999999999999999999987 35779999998841100
Q ss_pred -----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCc----CC--hHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464 123 -----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGF----VD--LALRTRVLSGIALKLMNLAKKFSLA 184 (226)
Q Consensus 123 -----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~----~~--~~~r~~~l~~~~~~L~~la~~~~~~ 184 (226)
.....+..+++++.+. ++++|||||++.+.. .+. .+ ...+.+.+.++++.|+.+++++|++
T Consensus 783 d~~~L~i~~~~~leei~~~l~~lv~~~-~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~ 861 (1706)
T 3cmw_A 783 DIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 861 (1706)
T ss_dssp CGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ChhheEEecCCcHHHHHHHHHHHHHcc-CCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCE
Confidence 0012334455555554 799999999998772 211 11 1124456888899999999999999
Q ss_pred EEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464 185 LLEPNLATTANLAESCLTCLRDSGSRKAVAAAA 217 (226)
Q Consensus 185 vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~ 217 (226)
||++||+++.++.....+ .+..|+.....++|
T Consensus 862 VIlinql~r~~g~~~Gdp-~~p~gs~~Leq~AD 893 (1706)
T 3cmw_A 862 LIFINQIRMKIGVMFGNP-ETTTGGNALKFYAS 893 (1706)
T ss_dssp EEEEECEEECTTCCSSCC-EEESSCSHHHHHEE
T ss_pred EEEEecCCCccccccCCc-cccCCcchhhheee
Confidence 999999998876543322 23445555555555
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.78 E-value=1.7e-18 Score=140.17 Aligned_cols=126 Identities=19% Similarity=0.290 Sum_probs=93.5
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------C
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------F 120 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~ 120 (226)
.+++||++.||.++.||+++|+++.|.|+||+|||||+.+++.... ..+++|+|++.+.. .
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 76 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL------RDGDPCIYVTTEESRDSIIRQAKQFNWD 76 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH------HHTCCEEEEESSSCHHHHHHHHHHTTCC
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH------HCCCeEEEEEcccCHHHHHHHHHHhcch
Confidence 5799999999999999999999999999999999999999998776 24678999986530 0
Q ss_pred ch--------------------------HHHHHHHHHHHHHhhCCCce--EEEEcCCchhhhcCcCChHHHHHHHHHHHH
Q 036464 121 YT--------------------------EQSAVINYLDKFVSEHKDVK--VVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172 (226)
Q Consensus 121 ~~--------------------------~~~~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~ 172 (226)
.. ..-.....+.+.+... +++ +||||++++++..+. ....+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~llilDe~~~~~~~d~-------~~~~~~~~ 148 (235)
T 2w0m_A 77 FEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKL-GYGKARLVIDSVSALFLDKP-------AMARKISY 148 (235)
T ss_dssp CGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHH-CSSCEEEEEETGGGGSSSCG-------GGHHHHHH
T ss_pred HHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhh-CCCceEEEEECchHhhcCCH-------HHHHHHHH
Confidence 00 0011223344444443 688 999999998764321 12357888
Q ss_pred HHHHHHHHcCCEEEEeccccc
Q 036464 173 KLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 173 ~L~~la~~~~~~vi~~nq~~~ 193 (226)
.|+++++++|++||+++|..+
T Consensus 149 ~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 149 YLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHhCCCeEEEEeccCc
Confidence 999999999999999999984
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=4e-18 Score=144.03 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=101.6
Q ss_pred HHHHHHh--hcccCceec-CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464 43 WDMLQEE--QESLARITT-SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG 119 (226)
Q Consensus 43 ~~l~~~~--~~~~~~i~T-g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~ 119 (226)
+|.++++ ......++| |++.||.+. +|+++|+++.|+|+||+|||||+.+++..... ..+.+|+|++.|..
T Consensus 2 ~~~l~~~~~~~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-----~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 2 RERIREHLSSEESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLEES 75 (296)
T ss_dssp HHHHHHHHHHCCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESSSC
T ss_pred hhHhhhhhccCCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEeCcCC
Confidence 3555543 256788999 999999999 89999999999999999999999999998862 23558999997630
Q ss_pred -------------C--ch------------HHH-----HH----------------HHHHHHHH---hhCCCceEEEEcC
Q 036464 120 -------------F--YT------------EQS-----AV----------------INYLDKFV---SEHKDVKVVIIDS 148 (226)
Q Consensus 120 -------------~--~~------------~~~-----~~----------------l~~l~~~l---~~~~~~~lvVIDs 148 (226)
. .. +.. .. ...+.+.+ ....++++||||+
T Consensus 76 ~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDe 155 (296)
T 1cr0_A 76 VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (296)
T ss_dssp HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 00 000 00 01111111 1234799999999
Q ss_pred CchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc-c------CCCCCCcCCcCCCCchhH
Q 036464 149 IAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT-A------NLAESCLTCLRDSGSRKA 212 (226)
Q Consensus 149 l~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~-~------~~~~~~~~~~~~sg~~~~ 212 (226)
++.+.... ....+...+.++++.|+++++++|++||+++|..+ . .+..+.+.+++.||.+..
T Consensus 156 pt~~~~~~--~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~ 224 (296)
T 1cr0_A 156 ISIVVSAS--GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 224 (296)
T ss_dssp EC-------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred ccccCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence 99865331 11123356678999999999999999999999974 1 234466667777776543
No 28
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.72 E-value=1.9e-17 Score=138.88 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=93.6
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccCchHHH----
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGFYTEQS---- 125 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~~~~~~---- 125 (226)
..++||++.||.++ ||+++|++++|+|+||+|||||+++++..+..+..+.+ .+++|+|++.|. ..+++
T Consensus 11 ~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~--~~~~~~~r~ 87 (279)
T 1nlf_A 11 EAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED--PPTAIHHRL 87 (279)
T ss_dssp HHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS--CHHHHHHHH
T ss_pred HHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC--CHHHHHHHH
Confidence 56899999999999 59999999999999999999999999987652111110 146899999773 11111
Q ss_pred ----------------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464 126 ----------------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171 (226)
Q Consensus 126 ----------------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~ 171 (226)
..+..+..++ .++++|||||+++++..+.. ....+.+++
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~---~~~~livlDe~~~~~~~d~~----~~~~~~~~~ 160 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAA---EGRRLMVLDTLRRFHIEEEN----ASGPMAQVI 160 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHH---TTCSEEEEECGGGGCCSCTT----CHHHHHHHH
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhc---CCCCEEEECCHHHhcCCCcC----chHHHHHHH
Confidence 0012222222 25899999999986543221 224567888
Q ss_pred HHHHHHHHHcCCEEEEeccccccC
Q 036464 172 LKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 172 ~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+.|++++++.|++||+++|..+..
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 999999999999999999998754
No 29
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=9.1e-17 Score=131.53 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=88.4
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------- 118 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------- 118 (226)
...+++||++.||.+++||+++|+++.|.||||+|||||+..++.....+ .+.+++|++.+.
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g 82 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEERARDLRREMASFG 82 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCHHHHHHHHHTTT
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccCCHHHHHHHHHHcC
Confidence 46889999999999999999999999999999999999999999654421 356788888652
Q ss_pred cCchHH--------------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHH
Q 036464 119 GFYTEQ--------------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRV 166 (226)
Q Consensus 119 ~~~~~~--------------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~ 166 (226)
+...+. -...+.+...++.. +++++++|++++...... +.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~p~~lilDep~~~ld~~~-d~~~~~-- 158 (251)
T 2ehv_A 83 WDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLE-EERKIR-- 158 (251)
T ss_dssp CCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSS-SGGGHH--
T ss_pred CChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhh-CCCEEEEccHHHHHhhcC-CHHHHH--
Confidence 000000 01122333334433 789999999998875321 111122
Q ss_pred HHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 167 LSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 167 l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+.+..+.+..++.|++||+++|..+..
T Consensus 159 --~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 159 --EVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp --HHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred --HHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 222333333356799999999987654
No 30
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.67 E-value=4.1e-17 Score=138.94 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=90.4
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc------ccCchHHHHH
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC------LGFYTEQSAV 127 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e------~~~~~~~~~~ 127 (226)
..++||++.||+++ ||+++|.+++|+||||+|||+|+++++.. . +.+|+|++.+ .+. .+....
T Consensus 104 ~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~-~--------G~~VlyIs~~~eE~v~~~~-~~le~~ 172 (331)
T 2vhj_A 104 GELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA-L--------GGKDKYATVRFGEPLSGYN-TDFNVF 172 (331)
T ss_dssp TTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH-H--------HTTSCCEEEEBSCSSTTCB-CCHHHH
T ss_pred hccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh-C--------CCCEEEEEecchhhhhhhh-cCHHHH
Confidence 34779999999999 99999999999999999999999999876 2 4578999982 111 122234
Q ss_pred HHHHHHHHhhCCCceEEEEcCCchhhhcCcC--ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~--~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
+..+.+.+.+. + +|||||++++...... ......+.+++++..|.+++++.|++++++++
T Consensus 173 l~~i~~~l~~~-~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 173 VDDIARAMLQH-R--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHHHHC-S--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHhhC-C--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 55566666654 3 9999999987543211 01111356788999999999999999998766
No 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=2.2e-13 Score=123.88 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=88.7
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-----
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA----- 126 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~----- 126 (226)
...+++||++.||++|+||+++|+++.|.|+||+|||||+.+++.... ..+.+++|++.+. ...++.
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~------~~G~~vi~~~~ee--~~~~l~~~~~~ 330 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC------ANKERAILFAYEE--SRAQLLRNAYS 330 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEESSS--CHHHHHHHHHT
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------hCCCCEEEEEEeC--CHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999998765 2466799998762 111110
Q ss_pred ----------------------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464 127 ----------------------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA 178 (226)
Q Consensus 127 ----------------------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la 178 (226)
....+...+. ..+++++|+|+++.+.. ... .+ +..+.+..|.+.+
T Consensus 331 ~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilDp~~~Ld~-~~~---~~--~~~~~i~~ll~~l 403 (525)
T 1tf7_A 331 WGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAIDSLSALAR-GVS---NN--AFRQFVIGVTGYA 403 (525)
T ss_dssp TSCCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEECHHHHTS-SSC---HH--HHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEcChHHHHh-hCC---hH--HHHHHHHHHHHHH
Confidence 0111111111 23799999996665543 221 11 1334445555555
Q ss_pred HHcCCEEEEeccccc
Q 036464 179 KKFSLALLEPNLATT 193 (226)
Q Consensus 179 ~~~~~~vi~~nq~~~ 193 (226)
++.|++||+++|...
T Consensus 404 ~~~g~tvilvsh~~~ 418 (525)
T 1tf7_A 404 KQEEITGLFTNTSDQ 418 (525)
T ss_dssp HHTTCEEEEEEECSS
T ss_pred HhCCCEEEEEECccc
Confidence 678999999999874
No 32
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.49 E-value=3.5e-13 Score=111.83 Aligned_cols=57 Identities=5% Similarity=-0.111 Sum_probs=53.6
Q ss_pred ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++||++.||++|+||+++|++++|.|.||+|||+|++|++.+.+ ..+++++|++.+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~------~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL------KSDNLVGMFSIS 58 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH------HTTCEEEEEECS
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH------HCCCcEEEEEEe
Confidence 589999999999999999999999999999999999999999887 579999999966
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.37 E-value=2.7e-12 Score=116.68 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------- 119 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------- 119 (226)
+...+++||++.||.+..||+++|+++.|.|+||+|||||+.+++...+.+ .+.+++|++.+..
T Consensus 16 ~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 16 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCHHHHHHHHGGG
T ss_pred cccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCCHHHHHHHHHHc
Confidence 346889999999999998899999999999999999999999975444432 2456889986520
Q ss_pred --Cch-----------------------HHH---HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464 120 --FYT-----------------------EQS---AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA 171 (226)
Q Consensus 120 --~~~-----------------------~~~---~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~ 171 (226)
.+. +.+ ...+.+...++. .++++|+||+++++... ....... ...+.
T Consensus 91 g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~-g~~~~lilDe~t~~~~~-~~lD~~~---~~~l~ 165 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK-YRARRVSIDSVTSVFQQ-YDASSVV---RRELF 165 (525)
T ss_dssp TCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHH-HTCSEEEEECSTTTSTT-TCCHHHH---HHHHH
T ss_pred CCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHH-cCCCEEEECCHHHHHHh-cCCHHHH---HHHHH
Confidence 000 001 112233333433 26899999999976543 1111112 22444
Q ss_pred HHHHHHHHHcCCEEEEeccccccC
Q 036464 172 LKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 172 ~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
..++++.+ .|++||+++|.....
T Consensus 166 ~ll~~l~~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 166 RLVARLKQ-IGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHH-HTCEEEEEEECSSSS
T ss_pred HHHHHHHH-CCCEEEEEecCCCCc
Confidence 55555544 699999999987653
No 34
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=99.10 E-value=8.8e-12 Score=90.43 Aligned_cols=66 Identities=29% Similarity=0.456 Sum_probs=32.6
Q ss_pred CCCCC---CCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464 2 EVSKL---PISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI 56 (226)
Q Consensus 2 ~~~~l---~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i 56 (226)
||++| ++++.+++||+++||+|+++|+.+++.+|.+ +|.||.++++++ +...+|
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~~r-~~~~~i 102 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRR-SEIIQI 102 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC------------------
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHHHh-cCCCee
Confidence 44455 4999999999999999999999999999987 578999999887 788999
Q ss_pred ecCchhHHHhhC
Q 036464 57 TTSCADLDNILG 68 (226)
Q Consensus 57 ~Tg~~~LD~~l~ 68 (226)
+||++.||.+|+
T Consensus 103 tTGs~~lD~lLg 114 (114)
T 1b22_A 103 TTGSKELDKLLQ 114 (114)
T ss_dssp ------------
T ss_pred ccCcHHHHhhhC
Confidence 999999999984
No 35
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.92 E-value=3.8e-09 Score=85.66 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=67.9
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chHHH-------------HHHHHHHHHHhh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTEQS-------------AVINYLDKFVSE 137 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~~~-------------~~l~~l~~~l~~ 137 (226)
.+|.++.++|++|+||||++++++.++. ..+.+|+|+..+... ...++ .....+.+.+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~------~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE------YADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH------HTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 5689999999999999999999999987 567899998533200 00000 011223333332
Q ss_pred ---CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 138 ---HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 138 ---~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..++++|||||++.+. . .++..++.+++ .++.||++.+.+.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~-----~---------~~ve~l~~L~~-~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFD-----D---------RICEVANILAE-NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSC-----T---------HHHHHHHHHHH-TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCc-----H---------HHHHHHHHHHh-CCCeEEEEecccc
Confidence 2368999999998532 1 23455666666 4999999999774
No 36
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.8e-08 Score=88.26 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++-.=++++||||+|||.+|..+|...- .+.++++... ....+....+..+-....+. .+.+|+|
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-aP~IIFi 247 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---------CKFIRVSGAELVQKYIGEGSRMVRELFVMAREH-APSIIFM 247 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---------CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---------CCceEEEhHHhhccccchHHHHHHHHHHHHHHh-CCceEee
Confidence 465555599999999999999999998874 3577777542 11233334555665555554 7899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++.++...... ......+.+.+++..|..+....++.||.+.+.-...+
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 999988754322 12234456777777777776677777775554444444
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=6e-09 Score=81.05 Aligned_cols=107 Identities=11% Similarity=0.066 Sum_probs=61.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH--HHHHHHhhCCCceEEEEc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN--YLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~--~l~~~l~~~~~~~lvVID 147 (226)
+++|..+.|+||||+|||+|+..++..... ..+..++|++.. ...+.+.. .. .....+....+++++|||
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-----~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~llilD 107 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYE-----KKGIRGYFFDTK--DLIFRLKHLMDEGKDTKFLKTVLNSPVLVLD 107 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHH-----HSCCCCCEEEHH--HHHHHHHHHHHHTCCSHHHHHHHTCSEEEEE
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEEHH--HHHHHHHHHhcCchHHHHHHHhcCCCEEEEe
Confidence 456899999999999999999999888741 245678888743 11111100 00 001222222367999999
Q ss_pred CCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++...-. +.. ....+ ...+... .+.+.++|+++|..-
T Consensus 108 E~~~~~~----~~~-~~~~l---~~ll~~~-~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 108 DLGSERL----SDW-QRELI---SYIITYR-YNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSSSCC----CHH-HHHHH---HHHHHHH-HHTTCEEEEECCCCS
T ss_pred CCCCCcC----CHH-HHHHH---HHHHHHH-HHcCCCEEEEcCCCh
Confidence 9974211 111 11222 2223332 346777777776654
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.8e-08 Score=88.03 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=77.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++-.=++++||||+|||.++..+|...- .+.+.++... ....+....+..+....... .+.+|+|
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~-aP~Iifi 280 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN---------ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK-APTIIFI 280 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC---------CCEEEEehhhhhhcccchHHHHHHHHHHHHHhc-CCeEEee
Confidence 676667799999999999999999998874 3567777542 11223334455555555554 6899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
|++.++...... ........+..++..|..+....++.||.+.+.-..++..
T Consensus 281 DEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp ECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTT
T ss_pred cchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHh
Confidence 999988755332 1123344556666666666556677887555444445543
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.85 E-value=1.9e-08 Score=82.12 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=34.4
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|+++++|++++.++. .. ...++..|++++++.|.+||++.|-..
T Consensus 163 ~p~llllDEPts~LD~-----~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDS-----KT----GEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCH-----HH----HHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 7999999999986633 12 236677788888888999999888654
No 40
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.84 E-value=2.5e-08 Score=86.86 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=34.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+|+++++|++++-++. ..+ .++...|+++.++.|+++|++.|-.
T Consensus 151 ~P~lLLLDEPts~LD~-----~~~----~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDA-----ALR----VQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp CCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCCEEEEECCCcCCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEECCH
Confidence 6899999999976633 222 2566788888888999999998865
No 41
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.84 E-value=2.3e-08 Score=83.21 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=34.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. .. ...+++.|++++++.+++||++.|-..
T Consensus 165 ~p~lLllDEPts~LD~-----~~----~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDL-----YH----QQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCH-----HH----HHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCH-----HH----HHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 6899999999976633 12 236677888888888889998888653
No 42
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.3e-08 Score=86.85 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++-.=++|+||||+|||.++..+|...- .+.++++... ....+....+..+....... .+.+|+|
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~---------~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~-~P~Iifi 280 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG---------ANFIFSPASGIVDKYIGESARIIREMFAYAKEH-EPCIIFM 280 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS-CSEEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEehhhhccccchHHHHHHHHHHHHHHhc-CCceeee
Confidence 566666799999999999999999998874 3577777542 11223334455555555554 7899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
|++.++...... ........+..++..+..+....++.||.+.+.-..++..
T Consensus 281 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 281 DEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp ECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred ecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence 999988754322 1223344566666666665555666676544433445443
No 43
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.6e-08 Score=87.16 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=78.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++..=++++||||+|||+++..+|...- .+.+.++... ....+....+..+-....+. .+.+++|
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---------~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~-aP~Iifi 271 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---------AAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN-APSIIFI 271 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---------CEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEecchhhccccchhHHHHHHHHHHHHHc-CCCeeec
Confidence 566666699999999999999999998864 4577777542 11223334455555555554 7899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++.++...... ......+.+.+++..+..+....++.||.+.+.-..++
T Consensus 272 DEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 272 DEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp ECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred hhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 999988754321 12234456777888888777777777775554444444
No 44
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.81 E-value=2.6e-08 Score=86.35 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=35.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+|+++++|++++.++. .. ...++..|+++.++.|+|||++.|-..
T Consensus 181 ~P~lLLlDEPTs~LD~-----~~----~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 181 NPKVLLCDQATSALDP-----AT----TRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp CCSEEEEESTTTTSCH-----HH----HHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred CCCEEEEECCCccCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 7999999999986643 12 236777888888899999999888653
No 45
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.80 E-value=2.6e-08 Score=83.22 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
.+|+++++|++++-++. ..+ ..+++.|++++++.|.|||++.|-....
T Consensus 160 ~~P~lLlLDEPts~LD~-----~~~----~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDP-----MGV----SEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp TCCSEEEEECTTTTCCH-----HHH----HHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 37999999999976633 122 2566777777744599999888876543
No 46
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.3e-08 Score=85.78 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=78.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++-.=++|+||||+|||.+|..+|...- ...+.++... ....+....+..+-....+. .+.+|+|
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---------~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~-aP~IIfi 281 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS---------ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN-APSIVFI 281 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT---------CEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC---------CCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc-CCcEEEE
Confidence 566666699999999999999999999874 3566676432 11223334455555555554 7899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
|++.++...... ......+.+..++..+..+....++.||.+.+.-..++..
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpA 337 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPA 337 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTT
T ss_pred ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHH
Confidence 999988764322 1123344566677777666556677777555544455544
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.78 E-value=8.5e-08 Score=79.63 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=70.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.++.-+.|+||||+|||+++..++... +.++++++.... .+ .+....+..+....... .+.+|+|
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~i 116 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---------NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK-APSIIFI 116 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEehHHHHHhccchHHHHHHHHHHHHHHc-CCeEEEE
Confidence 46777779999999999999999998775 346777775421 11 11222333444444443 6789999
Q ss_pred cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++..+....... ....+..+..++..+..+....++.||.+.+.....+
T Consensus 117 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 117 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp ETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 9999876432211 1223334444444443333345677777776554443
No 48
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.76 E-value=6.6e-08 Score=83.64 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+|+++++|++++-++. ..|. ++...|+++.++.|+|+|++.|-.
T Consensus 155 ~~P~lLLLDEPts~LD~-----~~r~----~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 155 PDPELILLDEPFSALDE-----QLRR----QIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp TCCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhCCCEEEEEeCCH
Confidence 37999999999976633 2222 455567788888999999999864
No 49
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.72 E-value=7.8e-08 Score=83.11 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=34.4
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+|+++++|++++-++. ..| .++...|+++.++.+.++|++.|-..
T Consensus 162 ~~P~lLLLDEP~s~LD~-----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDT-----QIR----RELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp TCCSEEEEESTTCCSSH-----HHH----HHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 37999999999976532 222 25666778888888999999988643
No 50
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.72 E-value=9e-08 Score=82.86 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.1
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+++++++|++++-++. ..|. ++...|+++.++.|.++|++.|-..
T Consensus 150 ~~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDA-----NLRM----IMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TCCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 37999999999976633 2232 5666778888888999998888643
No 51
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=1.4e-08 Score=78.63 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQ 93 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~ 93 (226)
+++|+++.|.||||+|||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67899999999999999999984
No 52
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.72 E-value=6.9e-08 Score=78.21 Aligned_cols=45 Identities=4% Similarity=0.046 Sum_probs=32.7
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+++++++|++++.++. ..+ ..+.+.|++++++ |.+||++.|-..
T Consensus 157 ~~p~lllLDEPt~~LD~-----~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDS-----ANT----KRVMDIFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred cCCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 37999999999976633 122 2556677777766 899999988654
No 53
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.71 E-value=9.9e-08 Score=82.69 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+|+++++|++++-++. ..| .++...|+++.++.|.++|++.|-.
T Consensus 150 ~~P~lLLLDEP~s~LD~-----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDA-----LLR----LEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp TCCSEEEEESGGGGSCH-----HHH----HHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHHhCCCEEEEECCCH
Confidence 37999999999986633 222 2566777888888899999888864
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.2e-07 Score=84.20 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+++-.=++|+||||+|||.++..+|...- ...+.++... ....+....+..+....... .+.+|+|
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---------~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~-aP~IIfi 308 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD---------ATFIRVIGSELVQKYVGEGARMVRELFEMARTK-KACIIFF 308 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC---------CCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc-CCceEee
Confidence 566666699999999999999999998874 3567776432 11223334455555555554 7899999
Q ss_pred cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++.++...... ........+..++..+..+....++.||.+.+.-..++
T Consensus 309 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD 362 (467)
T 4b4t_H 309 DEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 362 (467)
T ss_dssp ECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred cccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence 999988754322 11223344555666665555556676665544333333
No 55
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.69 E-value=6.1e-08 Score=73.57 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCch
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF 151 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~ 151 (226)
+|+.+.|+||+|+|||+|+..++.... ..+.+++|++....... .++ .+++++|||+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~------~~g~~~~~~~~~~~~~~----------~~~---~~~~lLilDE~~~ 94 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL------EAGKNAAYIDAASMPLT----------DAA---FEAEYLAVDQVEK 94 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH------TTTCCEEEEETTTSCCC----------GGG---GGCSEEEEESTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH------hcCCcEEEEcHHHhhHH----------HHH---hCCCEEEEeCccc
Confidence 799999999999999999999988775 23567999986522111 122 2579999999986
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.68 E-value=1.3e-07 Score=78.26 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998776543
No 57
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=2e-07 Score=79.42 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=65.8
Q ss_pred hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceE
Q 036464 67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKV 143 (226)
Q Consensus 67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~l 143 (226)
+.|+..+..-++|+||||+|||+++..++.... +.++++++.... . ..+....+..+....... ++.+
T Consensus 38 ~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~-~~~v 108 (322)
T 1xwi_A 38 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-KPSI 108 (322)
T ss_dssp SCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT-SSEE
T ss_pred HhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc-CCcE
Confidence 335566777899999999999999999998762 346777775421 0 111112334444444443 6899
Q ss_pred EEEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHH-HcCCEEEEec
Q 036464 144 VIIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAK-KFSLALLEPN 189 (226)
Q Consensus 144 vVIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~-~~~~~vi~~n 189 (226)
|+||++..+....... .......+.+++..+..+.. ..++.||.+.
T Consensus 109 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 109 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp EEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred EEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 9999999876432221 11122233444444443321 3455666444
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.66 E-value=1e-07 Score=82.90 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=33.5
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++++++|++++-++. ..|. ++...|+++.++.|.++|++.|-.
T Consensus 159 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDA-----KLRV----AMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp CCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHHTCEEEEEESCH
T ss_pred CCCEEEEcCCCccCCH-----HHHH----HHHHHHHHHHHhCCCEEEEEeCCH
Confidence 7999999999976633 2232 566677888888899999888864
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.65 E-value=1.9e-07 Score=77.43 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+++++++|++++-++. ..+ ..+.+.|++++++ +.+||++.|-..
T Consensus 176 ~~p~lllLDEPts~LD~-----~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~ 220 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDP-----EMV----GEVLSVMKQLANE-GMTMVVVTHEMG 220 (263)
T ss_dssp TCCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred CCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 37999999999986633 222 2566677777666 999999988643
No 60
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.63 E-value=1.4e-07 Score=81.37 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=34.1
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+++++++|++++-++. ..| .++...|+++.++.|+++|++.|-.
T Consensus 144 ~~P~lLLLDEP~s~LD~-----~~~----~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALDP-----RTQ----ENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSCH-----HHH----HHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 37999999999976633 222 2566778888888899999988864
No 61
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.62 E-value=1.3e-07 Score=78.19 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.1
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++++|++++.++. ..+ ..+.+.|++++++ |.+||++.|-....
T Consensus 171 ~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAP-----GLA----HDIFNHVLELKAK-GITFLIIEHRLDIV 216 (257)
T ss_dssp CCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred CCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence 7899999999986633 222 2566677777665 99999998875433
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.62 E-value=1.4e-07 Score=75.73 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
.+..+.|+||||+|||+++..++.... ..+.+++|++... ..+. +.+.+....++.+||||++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~------~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN------ELERRSFYIPLGI--HASI------STALLEGLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEGGG--GGGS------CGGGGTTGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEHHH--HHHH------HHHHHHhccCCCEEEEeccccc
Confidence 567899999999999999999998875 3467899998652 1111 1111222235789999999865
Q ss_pred hhcCcCChHHHHHHHHHHHHHHHHHHHHcCC-EEEEecc
Q 036464 153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSL-ALLEPNL 190 (226)
Q Consensus 153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~-~vi~~nq 190 (226)
... .. ....+...+......... .|+.+|.
T Consensus 117 ~~~-----~~---~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 117 AGH-----PL---WEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp TTC-----HH---HHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCC-----HH---HHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 321 11 122344455555555555 4555543
No 63
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.61 E-value=2.6e-07 Score=75.65 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998877543
No 64
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.60 E-value=1.7e-07 Score=76.74 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=32.8
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+++++++|++++.++. ..+ ..+.+.|++++++.|.+||++.|-.
T Consensus 143 ~~p~lllLDEPts~LD~-----~~~----~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDL-----KTK----GVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp TCCSSBEEESTTSSCCH-----HHH----HHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred cCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 37999999999976633 222 2566677788777788888888864
No 65
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.60 E-value=1.5e-07 Score=73.94 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-c-----hHHHH------HHHHHHHHHhhC-C
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-Y-----TEQSA------VINYLDKFVSEH-K 139 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~-----~~~~~------~l~~l~~~l~~~-~ 139 (226)
+|.++.++|++|+||||++++++.+.. ..+.+|+++....-. + ..... ......++++.. .
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~------~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~ 75 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK------LGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEE 75 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH------HTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCT
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcC
Confidence 478999999999999999999998876 356788887533100 0 00000 001112222222 2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++++|+||+++.+ .. .+...|+.++++ ++.|+++...+.
T Consensus 76 ~~dvviIDE~Q~~-~~-------------~~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NP-------------SLFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGS-CT-------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCEEEEECcccC-CH-------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence 5899999999953 11 234566667766 999999877543
No 66
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.59 E-value=8.6e-08 Score=82.82 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+++++++|++++.++.. .|. ++...|+++.++.|+++|++.|-.
T Consensus 157 ~~P~lLLLDEP~s~LD~~-----~r~----~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDAR-----MRD----SARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp TCCSEEEEESTTTTSCGG-----GHH----HHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCCEEEEECCcccCCHH-----HHH----HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 379999999999876442 122 566678888888899999888864
No 67
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.59 E-value=3.8e-07 Score=74.50 Aligned_cols=75 Identities=23% Similarity=0.131 Sum_probs=44.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|++...-+.|+||||+|||+++..++.... .++++++.... .+ .+....+..+-+..... .+.+|+|
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~vl~i 104 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ---------VPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR-APCIVYI 104 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEechHHHHhhccChhHHHHHHHHHHHHhc-CCeEEEE
Confidence 455566689999999999999999988753 35777775421 11 11112222332233333 5799999
Q ss_pred cCCchhhh
Q 036464 147 DSIAFHFR 154 (226)
Q Consensus 147 Dsl~~l~~ 154 (226)
|++..+..
T Consensus 105 Deid~l~~ 112 (262)
T 2qz4_A 105 DEIDAVGK 112 (262)
T ss_dssp ECC-----
T ss_pred eCcchhhc
Confidence 99998754
No 68
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.58 E-value=3.6e-07 Score=79.49 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=33.3
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++++++|++++-++. ..|. ++...|+++.++.+.++|++.|-.
T Consensus 157 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDA-----KLRV----RMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp CCSEEEEECTTTTSCH-----HHHH----HHHHHHHHHHHHHTCEEEEEESCH
T ss_pred CCCEEEECCCCccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEECCCH
Confidence 7899999999976633 2232 566677888888899999888864
No 69
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.58 E-value=4.9e-07 Score=74.52 Aligned_cols=110 Identities=12% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--CCCeEEEEeccc-------------c-C--c-------hHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--LGGKAIYIGKCL-------------G-F--Y-------TEQS 125 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--~~~~vlyi~~e~-------------~-~--~-------~~~~ 125 (226)
+++|+++.|.||+|+|||||+..++... +++.|. ....+-|+..+. + . . ....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 105 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS--CCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence 7899999999999999999998776543 222111 123455654321 0 0 0 0000
Q ss_pred HHHHHHHHHHhh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHH
Q 036464 126 AVINYLDKFVSE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNL 177 (226)
Q Consensus 126 ~~l~~l~~~l~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~l 177 (226)
...+.++++. ..+++++++|++++.++. ..+ ..+.+.|+++
T Consensus 106 --~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l 174 (253)
T 2nq2_C 106 --YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL-----ANQ----DIVLSLLIDL 174 (253)
T ss_dssp --HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH-----HHH----HHHHHHHHHH
T ss_pred --HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHH
Confidence 0111111110 127899999999986633 222 2566677777
Q ss_pred HHHcCCEEEEeccccc
Q 036464 178 AKKFSLALLEPNLATT 193 (226)
Q Consensus 178 a~~~~~~vi~~nq~~~ 193 (226)
+++.+.+||++.|-..
T Consensus 175 ~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 175 AQSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHTSCCEEEEEESCHH
T ss_pred HHhcCCEEEEEecCHH
Confidence 7777899998888643
No 70
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.58 E-value=2.5e-07 Score=77.05 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=33.4
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+++++++|++++-++. ..+ ..++..|++++++.+.+||++.|-..
T Consensus 173 ~~p~lllLDEPts~LD~-----~~~----~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDA-----GNQ----LRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCH-----HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 37999999999976633 222 25666777776667899999888654
No 71
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.57 E-value=3.5e-07 Score=74.81 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++.-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999877654
No 72
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.57 E-value=3.3e-07 Score=75.42 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999998776543
No 73
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.57 E-value=1.1e-07 Score=80.67 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+|||||+.-++.-+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 7899999999999999999997766544
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.56 E-value=4.8e-07 Score=69.48 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=62.5
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCCCCeEEEEeccc----cCchHH-HHHHHHHHHHHhhCCCceEEEEc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGLGGKAIYIGKCL----GFYTEQ-SAVINYLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~~~~vlyi~~e~----~~~~~~-~~~l~~l~~~l~~~~~~~lvVID 147 (226)
...+.|+||||+|||+++..++....... .....+..+++++... ...... ...+..+...+....++.++|||
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 122 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID 122 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 45679999999999999999998864100 0001356788876431 011111 11233333333344467899999
Q ss_pred CCchhhhcCc-CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 148 SIAFHFRHGF-VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 148 sl~~l~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
++..+..... .+. ...+.+.|+.+..+.++.+|++...
T Consensus 123 e~~~l~~~~~~~~~------~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 123 EIHTVVGAGAVAEG------ALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp TGGGGSSSSSSCTT------SCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred CHHHhccccccccc------chHHHHHHHHHHhcCCeeEEEecCH
Confidence 9997652211 000 0123344555556677777766543
No 75
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.55 E-value=3.8e-07 Score=77.49 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEE
Q 036464 68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVV 144 (226)
Q Consensus 68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lv 144 (226)
.++..+..-++|+||||+|||+++..++... +.++++++... ....+....+..+....... ++.+|
T Consensus 45 ~~~~~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl 114 (322)
T 3eie_A 45 KGNRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-KPSII 114 (322)
T ss_dssp CTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---------TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT-SSEEE
T ss_pred hcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---------CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc-CCeEE
Confidence 3455566779999999999999999998875 34677777431 11112222344444444444 67999
Q ss_pred EEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHH-HHcCCEEEEeccc
Q 036464 145 IIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLA-KKFSLALLEPNLA 191 (226)
Q Consensus 145 VIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la-~~~~~~vi~~nq~ 191 (226)
+||++..+....... ..........++..+..+. ...++.||.+.+.
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 115 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp EEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999876432110 0001122334444444443 2345666644433
No 76
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.55 E-value=4.8e-07 Score=74.30 Aligned_cols=28 Identities=32% Similarity=0.270 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998776553
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=4.3e-07 Score=69.85 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCCCCeEEEEecccc----Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGLGGKAIYIGKCLG----FY-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~~~~vlyi~~e~~----~~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
.+..+.|+|+||+|||+++..++....-.. .....+.++++++.... .. .+....+..+.+.+....+..+|||
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 345689999999999999999988764100 00012567888874310 11 1111223333333333446789999
Q ss_pred cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
|++..+....... .-..+...|+.+....++.+|++..
T Consensus 122 De~~~l~~~~~~~------~~~~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 122 DELHTMVGAGKAD------GAMDAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp ETGGGGTT------------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred eCHHHHhccCccc------chHHHHHHHHHhhccCCeEEEEeCC
Confidence 9999765321000 0011233444555566676666543
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.53 E-value=5.7e-07 Score=85.17 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=75.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|+.+-.=++|+||||+|||+|+..+|... +..++++++.. ....+.-..+..+-+..+.. .+.+|+|
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el---------g~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~-~PsIIfI 303 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI 303 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT---------TCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTS-CSEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHc-CCeEEEE
Confidence 56666669999999999999999988764 45677787431 11122222334443334333 7899999
Q ss_pred cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
|++.++...... ......+.+.+++..+..+....++.||.+..-...++..
T Consensus 304 DEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp ESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred ehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHH
Confidence 999988754322 1111234566777777777667788887665544444443
No 79
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.51 E-value=1.1e-06 Score=78.64 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cch-HHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYT-EQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~-~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
..+++| +.|+||||+|||+++..++...- .+.++++.... .+. .....+..+-..... ..+.+|+
T Consensus 46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~---------~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~-~~p~ILf 113 (476)
T 2ce7_A 46 ARMPKG--ILLVGPPGTGKTLLARAVAGEAN---------VPFFHISGSDFVELFVGVGAARVRDLFAQAKA-HAPCIVF 113 (476)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHHT---------CCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHcC---------CCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEE
Confidence 345555 88999999999999999988753 35777775421 111 111112222222222 2689999
Q ss_pred EcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 146 IDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 146 IDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
||++.++...... ....+.+.+.+++..+..+....++.||.+.+.....+
T Consensus 114 IDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 114 IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp EETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred EechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 9999987543211 11233445666666666554556788887766655444
No 80
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.50 E-value=4.4e-07 Score=76.40 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=67.7
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCCceE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKDVKV 143 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~~~l 143 (226)
-|++++..++|+||||+|||+++..++.... .+.+++++.. ..... ..+..+-+..... .+.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---------~~~i~v~~~~--l~~~~~g~~~~~~~~~f~~a~~~-~p~i 111 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPE--LLTMWFGESEANVREIFDKARQA-APCV 111 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---------CEEEEECHHH--HHHHHHTTCTTHHHHHHHHHHHT-CSEE
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---------CCEEEEEhHH--HHhhhcCchHHHHHHHHHHHHhc-CCeE
Confidence 3678889999999999999999999988752 4667776421 10000 0122222222232 5799
Q ss_pred EEEcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 144 VIIDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 144 vVIDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|+||++..+....... .....+.+.+++..+..+....++.||.+.+....++
T Consensus 112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 9999999776431100 0000122345555555444456777777766554443
No 81
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.50 E-value=3.7e-07 Score=73.44 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999877654
No 82
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.49 E-value=1.7e-07 Score=73.39 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHH-----------------HHHHHHhhC
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN-----------------YLDKFVSEH 138 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~-----------------~l~~~l~~~ 138 (226)
++.|+|++|||||+|+.+++.. +.+++|++++.....+..+.+. ++.+.+...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----------~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~~~ 70 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----------APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITAD 70 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----------CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSCTT
T ss_pred CEEEECCCCCcHHHHHHHHHhc----------CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHHhh
Confidence 4789999999999999998743 3479999986311111110000 122222222
Q ss_pred -CCceEEEEcCCchhhhcCc-------C----ChHHHHHHH-HHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 139 -KDVKVVIIDSIAFHFRHGF-------V----DLALRTRVL-SGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 139 -~~~~lvVIDsl~~l~~~~~-------~----~~~~r~~~l-~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.+.++|+||+++..+.... + +.......+ .++...+..+.+..+-.|+++|++-..+-
T Consensus 71 ~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsNEVG~GiV 141 (180)
T 1c9k_A 71 LAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIV 141 (180)
T ss_dssp SCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCCSSCC
T ss_pred cccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEccccCCCC
Confidence 1237999999997665422 0 111001112 23334455555566677888898865443
No 83
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.48 E-value=6e-07 Score=76.07 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=47.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl 149 (226)
.+..+.|+||||+|||+++..++.... ..+.+++|++.+ .+...+ ..+ .....+.....++++++||++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~------~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi 107 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK------KRGYRVIYSSAD--DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV 107 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH------HTTCCEEEEEHH--HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEHH--HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence 456799999999999999999998875 236789999865 222111 111 011222222224789999999
Q ss_pred chhh
Q 036464 150 AFHF 153 (226)
Q Consensus 150 ~~l~ 153 (226)
+.+.
T Consensus 108 ~~l~ 111 (324)
T 1l8q_A 108 QFLS 111 (324)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9754
No 84
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.47 E-value=6.9e-07 Score=81.29 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=68.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEeccccC----c-hHHHH----------------
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLGF----Y-TEQSA---------------- 126 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~~----~-~~~~~---------------- 126 (226)
+++|+++.|.||+|+|||||+..++.... ++.|. .+.++-|+...... . .+.+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 67999999999999999999987775432 22211 23345555432100 0 00000
Q ss_pred -----------------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 127 -----------------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 127 -----------------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
..-.+...+. .+++++++|++++.++. ..+ ..+++.|++++++.+.
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~--~~p~lLlLDEPT~gLD~-----~~~----~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLA--KEADLYVLDQPSSYLDV-----EER----YIVAKAIKRVTRERKA 437 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH--SCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH--cCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCC
Confidence 0011222222 26899999999986633 222 3677788888888999
Q ss_pred EEEEecccc
Q 036464 184 ALLEPNLAT 192 (226)
Q Consensus 184 ~vi~~nq~~ 192 (226)
+||++.|-.
T Consensus 438 tvi~vsHdl 446 (538)
T 3ozx_A 438 VTFIIDHDL 446 (538)
T ss_dssp EEEEECSCH
T ss_pred EEEEEeCCH
Confidence 999888864
No 85
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.46 E-value=1.2e-06 Score=75.50 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=61.2
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
++..+..-++|+||||+|||+++..++.... .++++++... ..+ .+....+..+....... .+.+|+
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~ 148 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN---------STFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-KPSIIF 148 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---------CEEEEEEHHHHHSCC---CHHHHHHHHHHHHHT-SSEEEE
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHc-CCeEEE
Confidence 4556666689999999999999999998763 4567776431 001 11112233333333333 689999
Q ss_pred EcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHH-HcCCEEEEecc
Q 036464 146 IDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAK-KFSLALLEPNL 190 (226)
Q Consensus 146 IDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~-~~~~~vi~~nq 190 (226)
||++..+...... ..........+++..+..+.. ..++.||.+.+
T Consensus 149 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn 195 (355)
T 2qp9_X 149 IDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 195 (355)
T ss_dssp EECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES
T ss_pred EechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecC
Confidence 9999987643211 001112233444444444322 34566664443
No 86
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.46 E-value=1.8e-06 Score=74.33 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=62.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCchH--------------------HHHHHHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYTE--------------------QSAVINYLDKF 134 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~~--------------------~~~~l~~l~~~ 134 (226)
.+.|+||||+|||+++..++.... .. +..++|+++....... .....+.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 119 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK------DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 119 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT------TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh------hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH
Confidence 899999999999999999998874 23 5688999853211110 11233445555
Q ss_pred HhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHH--HcCCEEEEeccc
Q 036464 135 VSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAK--KFSLALLEPNLA 191 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~--~~~~~vi~~nq~ 191 (226)
+....++.+||||+++.+ + ...+..+.+.+..+.. ..++.+|++.+.
T Consensus 120 l~~~~~~~vlilDE~~~l------~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNL------A----PDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHTTCCEEEEEETGGGS------C----HHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HhhcCCeEEEEEECcccc------c----hHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 555556889999999865 1 1122233333333322 157888876543
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.46 E-value=9.2e-07 Score=74.25 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=45.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHH----HHHHHHHHHhhCCCce
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSA----VINYLDKFVSEHKDVK 142 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~----~l~~l~~~l~~~~~~~ 142 (226)
|.++...+.|+||||+|||+++..+|...- .++++++... ..+ .+... .+....+.++. ..+.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~---------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~-~~~~ 101 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG---------INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK-GNMC 101 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT---------CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTT-SSCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhc-CCCe
Confidence 455566789999999999999999998863 4678887431 011 11111 12222222233 3689
Q ss_pred EEEEcCCchhhh
Q 036464 143 VVIIDSIAFHFR 154 (226)
Q Consensus 143 lvVIDsl~~l~~ 154 (226)
+|+||++..+..
T Consensus 102 vl~iDEiD~~~~ 113 (293)
T 3t15_A 102 CLFINDLDAGAG 113 (293)
T ss_dssp CEEEECCC----
T ss_pred EEEEechhhhcC
Confidence 999999987664
No 88
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.44 E-value=1.3e-06 Score=72.25 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++.-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999877654
No 89
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.42 E-value=2.6e-06 Score=78.60 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=69.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEecccc-----CchHHHHHH--------HHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLG-----FYTEQSAVI--------NYLDKFV 135 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~-----~~~~~~~~l--------~~l~~~l 135 (226)
+++|+++.|.||+|+|||||+..++... +++.|.- ..++.|+..+.. ...+.+... ..+.+++
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 4789999999999999999998877643 2222221 345677764320 001111000 0111111
Q ss_pred hh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464 136 SE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187 (226)
Q Consensus 136 ~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~ 187 (226)
+. ..+++++++|++++.++. ..+ ..+.+.|++++++.+.+||+
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~tvi~ 527 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV-----EQR----LAVSRAIRHLMEKNEKTALV 527 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH-----HHH----HHHHHHHHHHHHHTTCEEEE
T ss_pred HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCEEEE
Confidence 10 237999999999986633 222 35677788888888999999
Q ss_pred ecccc
Q 036464 188 PNLAT 192 (226)
Q Consensus 188 ~nq~~ 192 (226)
+.|-.
T Consensus 528 vsHd~ 532 (607)
T 3bk7_A 528 VEHDV 532 (607)
T ss_dssp ECSCH
T ss_pred EeCCH
Confidence 98864
No 90
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.42 E-value=9.2e-07 Score=72.70 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999888764
No 91
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.41 E-value=1.2e-06 Score=73.15 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999998776543
No 92
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.40 E-value=2e-06 Score=71.04 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998877654
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=1.4e-06 Score=71.23 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~ 153 (226)
+.|+||||+|||+++..++...- .++++++..... ..+....+..+.+.... ..+.+++||++..+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~l~ 117 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGSDFVEMFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVG 117 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT---------CCEEEECSCSSTTSCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC---------CCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhhhc
Confidence 88999999999999999987753 346777754210 00101112222222222 357899999998765
Q ss_pred hcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 154 RHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 154 ~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
..... ....+...+..++..+..+....++.||.+.+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp CCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 43211 1122333445555555443334456666554443333
No 94
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.39 E-value=8.8e-07 Score=75.90 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=63.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------------------HHHHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------------EQSAVINYL 131 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------------------~~~~~l~~l 131 (226)
..+..+.|+||+|+|||+++..++....- .. +.+..++|+++...... ........+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~--~~-~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK--KF-LGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH--HT-CSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH--Hh-cCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 45678999999999999999999887641 00 00567899984311000 011234555
Q ss_pred HHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH---HHcCCEEEEecccc
Q 036464 132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA---KKFSLALLEPNLAT 192 (226)
Q Consensus 132 ~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la---~~~~~~vi~~nq~~ 192 (226)
.+.+.....+.+||||+++.+......+ .+..|.+.. ...++.+|++.+..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~~~----------~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYNDD----------ILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSCST----------HHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCcCH----------HHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5666655458899999999776432111 222333333 34567777766543
No 95
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.39 E-value=2.4e-06 Score=70.81 Aligned_cols=46 Identities=4% Similarity=0.055 Sum_probs=33.3
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
.+++++++|++++-++. ..+ ..+...|++++++ |.+||++.|-...
T Consensus 155 ~~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l~~~-g~tii~vtHd~~~ 200 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDR-----EGK----TDLLRIVEKWKTL-GKTVILISHDIET 200 (266)
T ss_dssp TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCCTT
T ss_pred cCCCEEEEcCccccCCH-----HHH----HHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence 37999999999976633 222 2566677777766 8999999887543
No 96
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.38 E-value=1.4e-06 Score=69.94 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=63.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chHHHHHHHH------------HHHHHhhC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTEQSAVINY------------LDKFVSEH 138 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~~~~~l~~------------l~~~l~~~ 138 (226)
.+|.+..++|+.|+||||.+++.+.++. ..+.+|+++.....+ +.+. ....+ ..++++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~------~~g~kVli~k~~~d~R~ge~-~i~s~~g~~~~a~~~~~~~~~~~~~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ------FAKQHAIVFKPCIDNRYSEE-DVVSHNGLKVKAVPVSASKDIFKHI 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH------HTTCCEEEEECC------------------CCEEECSSGGGGGGGC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEeccCCcchHH-HHHhhcCCeeEEeecCCHHHHHHHH
Confidence 5689999999999999999999999987 578899988633211 1110 01111 11222222
Q ss_pred -CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 139 -KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 139 -~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.++++|+||+.+.+ .. +.+..|+.++.+ ++.||++-.-+
T Consensus 99 ~~~~dvViIDEaQF~-~~-------------~~V~~l~~l~~~-~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFF-DG-------------DIVEVVQVLANR-GYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGS-CT-------------THHHHHHHHHHT-TCEEEEEECSB
T ss_pred hcCCCEEEEECcccC-CH-------------HHHHHHHHHhhC-CCEEEEEeccc
Confidence 25899999999953 21 123556666654 99999987643
No 97
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.37 E-value=8.8e-07 Score=81.57 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+.-++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 8899999999999999999998776554
No 98
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.37 E-value=3.3e-06 Score=76.79 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEeccccC-----chHHHHHH--------HHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLGF-----YTEQSAVI--------NYLDKFV 135 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~~-----~~~~~~~l--------~~l~~~l 135 (226)
+++|+++.|.|++|+|||||+..++... +++.|.- ..++.|+..+... ..+.+... ..+.+++
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 4689999999999999999998877643 2222221 3456777643210 01111000 0111111
Q ss_pred hh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464 136 SE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187 (226)
Q Consensus 136 ~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~ 187 (226)
+. ..+++++++|++++.++. .. ...+.+.|++++++.+.+||+
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~-----~~----~~~i~~~l~~l~~~~g~tvi~ 457 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV-----EQ----RLAVSRAIRHLMEKNEKTALV 457 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH-----HH----HHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHhCCCEEEE
Confidence 10 237999999999986633 22 236677788888788999999
Q ss_pred ecccc
Q 036464 188 PNLAT 192 (226)
Q Consensus 188 ~nq~~ 192 (226)
+.|-.
T Consensus 458 vsHd~ 462 (538)
T 1yqt_A 458 VEHDV 462 (538)
T ss_dssp ECSCH
T ss_pred EeCCH
Confidence 98864
No 99
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.37 E-value=2.5e-06 Score=69.02 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCee-EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH--------------------HHH
Q 036464 73 CREV-TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI--------------------NYL 131 (226)
Q Consensus 73 ~G~i-~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l--------------------~~l 131 (226)
+|.+ +.+.|+||+|||+++++++...+ ..|.+|++++.+.....+...++ ..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~------~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL------RQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccH
Confidence 4554 77899999999999999999987 46788998886532232222111 123
Q ss_pred HHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 132 ~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.+.+.. +++++|||++...-... .....+.+.+. . ..+.++.|+.|.|+.
T Consensus 78 ~~~L~~--~pdlvIVDElG~~~~~~-~r~~~~~qDV~-------~-~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 78 DALLKA--APSLVLVDELAHTNAPG-SRHTKRWQDIQ-------E-LLAAGIDVYTTVNVQ 127 (228)
T ss_dssp HHHHHH--CCSEEEESCTTCBCCTT-CSSSBHHHHHH-------H-HHHTTCEEEEEEEGG
T ss_pred HHHHhc--CCCEEEEeCCCCCCccc-chhHHHHHHHH-------H-HHcCCCCEEEEcccc
Confidence 443443 58999999998431111 11122333322 1 346788899888765
No 100
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=9.3e-07 Score=69.59 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH------HHHHHHHHhhCCCceEEEEcC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV------INYLDKFVSEHKDVKVVIIDS 148 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~------l~~l~~~l~~~~~~~lvVIDs 148 (226)
..+.|+||||+|||+++..++.... ..+.+++|++.. .....+.. ...+...+. ++++||||+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA------KRNVSSLIVYVP--ELFRELKHSLQDQTMNEKLDYIK---KVPVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEEEHH--HHHHHHHHC---CCCHHHHHHHH---HSSEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEhH--HHHHHHHHHhccchHHHHHHHhc---CCCEEEEcC
Confidence 5688999999999999999998876 456789998853 11111100 011122222 357999999
Q ss_pred Cch
Q 036464 149 IAF 151 (226)
Q Consensus 149 l~~ 151 (226)
+..
T Consensus 124 i~~ 126 (202)
T 2w58_A 124 LGA 126 (202)
T ss_dssp ECC
T ss_pred CCC
Confidence 964
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.36 E-value=2.3e-06 Score=73.43 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------------------HHHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------------------QSAVINYL 131 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~--------------------~~~~l~~l 131 (226)
..+..+.|+||||+|||+++..++....-.....+.+..++|+++....... .-.....+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 3456799999999999999999988764100000125678899854211111 11123444
Q ss_pred HHHHhhCCCceEEEEcCCchhhh
Q 036464 132 DKFVSEHKDVKVVIIDSIAFHFR 154 (226)
Q Consensus 132 ~~~l~~~~~~~lvVIDsl~~l~~ 154 (226)
.+.+....++.+||||++..+..
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPK 144 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHH
T ss_pred HHHHhccCCeEEEEEccHhhhcc
Confidence 45555444578999999997643
No 102
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.35 E-value=1.1e-06 Score=71.72 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+..++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999998776543
No 103
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.3e-06 Score=77.82 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=68.0
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--CCCeEEEEecccc----Cch-HHH---------------H
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--LGGKAIYIGKCLG----FYT-EQS---------------A 126 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--~~~~vlyi~~e~~----~~~-~~~---------------~ 126 (226)
|-+..|+++.|.||+|+|||||+..++... +++.|. ...++.|+..... ... +.+ .
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~--~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 450 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGAL--KPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD 450 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSS--CCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHH
Confidence 447777999999999999999998776543 222221 1234666653210 000 000 0
Q ss_pred HH-----------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 127 VI-----------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 127 ~l-----------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
.+ -.+...+ ..+++++++|++++.++. .. ...+++.|++++++.|.
T Consensus 451 ~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL--~~~p~lLlLDEPT~gLD~-----~~----~~~i~~ll~~l~~~~g~ 519 (608)
T 3j16_B 451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL--GIPADIYLIDEPSAYLDS-----EQ----RIICSKVIRRFILHNKK 519 (608)
T ss_dssp THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT--TSCCSEEEECCTTTTCCH-----HH----HHHHHHHHHHHHHHHTC
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCCCCCCH-----HH----HHHHHHHHHHHHHhCCC
Confidence 00 0111122 237999999999986633 22 23667778888888899
Q ss_pred EEEEecccc
Q 036464 184 ALLEPNLAT 192 (226)
Q Consensus 184 ~vi~~nq~~ 192 (226)
+||++.|-.
T Consensus 520 tviivtHdl 528 (608)
T 3j16_B 520 TAFIVEHDF 528 (608)
T ss_dssp EEEEECSCH
T ss_pred EEEEEeCCH
Confidence 999998864
No 104
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=2.5e-06 Score=71.10 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVIIDS 148 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVIDs 148 (226)
.++.-+.|+||||+|||+++..++.... .+.++++.... ...+.......+....... ++.+|+||+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDE 121 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS---------ATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDE 121 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT---------CEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHT-CSEEEEEET
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC---------CCeEEeeHHHHhhcccchHHHHHHHHHHHHHHc-CCcEEEecc
Confidence 3466789999999999999999988753 45677775321 0111112233333334343 689999999
Q ss_pred Cchhhhc
Q 036464 149 IAFHFRH 155 (226)
Q Consensus 149 l~~l~~~ 155 (226)
+..+...
T Consensus 122 id~l~~~ 128 (297)
T 3b9p_A 122 VDSLLSE 128 (297)
T ss_dssp GGGTSBC
T ss_pred HHHhccc
Confidence 9987643
No 105
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.34 E-value=1.2e-06 Score=80.28 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+.-++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998877654
No 106
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.33 E-value=7.1e-07 Score=82.04 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+|||||+.-++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 7899999999999999999997766544
No 107
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.33 E-value=1.2e-06 Score=80.27 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+.-++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 7899999999999999999998877654
No 108
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.33 E-value=3.6e-06 Score=70.97 Aligned_cols=57 Identities=30% Similarity=0.313 Sum_probs=46.0
Q ss_pred eecCchhHHHhhCCCCCC-------CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 56 ITTSCADLDNILGGGIGC-------REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 56 i~Tg~~~LD~~l~GGi~~-------G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
+....+.|+..++++... +.++.++|++|+||||++..++.... ..+++|++++...
T Consensus 73 ~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~------~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 73 IKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK------KKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH------HTTCCEEEEECCC
T ss_pred HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEecCC
Confidence 345667788888765433 88999999999999999999998886 3678999999764
No 109
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.32 E-value=8.3e-07 Score=70.20 Aligned_cols=104 Identities=17% Similarity=0.055 Sum_probs=64.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchH----HHHH------HHHHHHHHhhCCC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTE----QSAV------INYLDKFVSEHKD 140 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~----~~~~------l~~l~~~l~~~~~ 140 (226)
..|++..|+|+.|+|||+-+++.+.+.. ..+.+|+|+..+.- .+.+ .+.. .....++.....+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~------~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~ 91 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG 91 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC
Confidence 3589999999999999988888888876 35789999985531 1111 1100 0111112212235
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
+++|+||+.+.+ .+ +...+..++ +.|+.||++..-+ ++.+.
T Consensus 92 ~DvIlIDEaQFf--k~-------------~ve~~~~L~-~~gk~VI~~GL~~-DF~~~ 132 (195)
T 1w4r_A 92 VAVIGIDEGQFF--PD-------------IVEFCEAMA-NAGKTVIVAALDG-TFQRK 132 (195)
T ss_dssp CSEEEESSGGGC--TT-------------HHHHHHHHH-HTTCEEEEEEESB-CTTSS
T ss_pred CCEEEEEchhhh--HH-------------HHHHHHHHH-HCCCeEEEEeccc-ccccc
Confidence 899999999965 21 122335556 6899999886544 34433
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.31 E-value=1.6e-06 Score=72.69 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSEHKDVKVVIIDSI 149 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl 149 (226)
+++.-+.|+||||+|||+++..++..+... ......++++++.... .+... ....+...+... ...+|+||++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~-~~~vl~iDEi 139 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL--GYVRKGHLVSVTRDDLVGQYIGH--TAPKTKEVLKRA-MGGVLFIDEA 139 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT--TSSSSCCEEEECGGGTCCSSTTC--HHHHHHHHHHHH-TTSEEEEETG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCcCCCcEEEEcHHHhhhhcccc--cHHHHHHHHHhc-CCCEEEEECh
Confidence 345568999999999999999888876410 0012347888875421 01110 112233444433 4579999999
Q ss_pred chhhhc
Q 036464 150 AFHFRH 155 (226)
Q Consensus 150 ~~l~~~ 155 (226)
..+...
T Consensus 140 d~l~~~ 145 (309)
T 3syl_A 140 YYLYRP 145 (309)
T ss_dssp GGSCCC
T ss_pred hhhccC
Confidence 987643
No 111
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.30 E-value=6.2e-06 Score=74.17 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=66.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GF-YTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~-~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|.++..-++|+||||+|||+++..++... +.+++++++.. .. ..+....+..+-+..... .+.+|+|
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~-~p~iLfL 303 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI 303 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhc-CCcEEEe
Confidence 35666679999999999999999997764 45788887431 01 111111222222222232 5789999
Q ss_pred cCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464 147 DSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA 194 (226)
Q Consensus 147 Dsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~ 194 (226)
|++..+....... .......+.++++.|..+....++.||.+.+....
T Consensus 304 DEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp ESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred cchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 9999776532211 11122334455555555444556677765554433
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.29 E-value=3.8e-06 Score=66.32 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chH-----H---------HHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTE-----Q---------SAVINYLDKFVS 136 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~-----~---------~~~l~~l~~~l~ 136 (226)
.+|.+..++|+.|+||||.+++++.++. ..+.+|+.+...... +.+ . ......+.+.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~------~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~ 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK------IAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh
Confidence 4689999999999999999999999986 467788887421100 000 0 000012222222
Q ss_pred hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
.++++|+||+.+.+ . . +.+..|+.++.+ ++.||++..-+
T Consensus 80 --~~~dvViIDEaqfl-~----~---------~~v~~l~~l~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFF-D----D---------EIVEIVNKIAES-GRRVICAGLDM 118 (191)
T ss_dssp --TTCSEEEECSGGGS-C----T---------HHHHHHHHHHHT-TCEEEEEECSB
T ss_pred --ccCCEEEEECCCCC-C----H---------HHHHHHHHHHhC-CCEEEEEeccc
Confidence 25899999999852 1 1 224466777765 99999985433
No 113
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.29 E-value=8.1e-06 Score=70.33 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=60.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKVVIIDS 148 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~lvVIDs 148 (226)
.+..-++|+||||+|||+++..++... +.++++++.... . ..+....+..+....... .+.+|+||+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDE 184 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---------GATFFSISASSLTSKWVGEGEKMVRALFAVARCQ-QPAVIFIDE 184 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHT-CSEEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCeEEEEehHHhhccccchHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 345568999999999999999998764 346788875421 1 111222333333334333 679999999
Q ss_pred CchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHH--cCCEEEEecc
Q 036464 149 IAFHFRHGFVD-LALRTRVLSGIALKLMNLAKK--FSLALLEPNL 190 (226)
Q Consensus 149 l~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq 190 (226)
+..+....... .......+.+++..+..+... .++.||.+.+
T Consensus 185 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 185 IDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp HHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred chhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99876432111 011122344555555544322 3556664443
No 114
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.29 E-value=1.7e-06 Score=70.17 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998776543
No 115
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.29 E-value=4.5e-06 Score=75.17 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhhC--CCceEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSEH--KDVKVV 144 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~~--~~~~lv 144 (226)
.-+++| +.|+||||+|||+|+..++.... .+.++++.... .+... ....+..+++.. ..+.++
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~---------~~~i~i~g~~~~~~~~g~--~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGV--GAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHTT---------CCEEEEEGGGGTSSCTTH--HHHHHHHHTTTSSSSSSCEE
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHhC---------CCEEEEehhHHHHhhhhh--HHHHHHHHHHHHHhcCCCEE
Confidence 345666 89999999999999999887652 46788886521 11111 123344555442 246899
Q ss_pred EEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 145 IIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 145 VIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
+||++..+...... ....+.+.+.+++..|.....+..+.|+.+.+-....+.
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999876532211 122333444444444433223344555555444444443
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=3.5e-06 Score=74.75 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=60.5
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHHH--HHHHHHhhCC-CceEEEEcCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVIN--YLDKFVSEHK-DVKVVIIDSI 149 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l~--~l~~~l~~~~-~~~lvVIDsl 149 (226)
+..+.|+||||+|||+|+..++..... ...+.+++|++.+. +...+ ..+. ....+..... ++++++||++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~----~~~~~~v~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSEK--FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH----HCCSSCEEEEEHHH--HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeHHH--HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence 567999999999999999999887641 02367899998652 22211 1110 1122222223 6899999999
Q ss_pred chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
+.+... ...+ ..++..+..+. +.+..+|++.+
T Consensus 204 ~~l~~~-----~~~q---~~l~~~l~~l~-~~~~~iIitt~ 235 (440)
T 2z4s_A 204 QFLIGK-----TGVQ---TELFHTFNELH-DSGKQIVICSD 235 (440)
T ss_dssp GGGSSC-----HHHH---HHHHHHHHHHH-TTTCEEEEEES
T ss_pred ccccCC-----hHHH---HHHHHHHHHHH-HCCCeEEEEEC
Confidence 975431 0112 23444554443 45666666554
No 117
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.26 E-value=6.9e-06 Score=71.46 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--ch-HHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YT-EQSAVINYLDKFVSEHKDVKVVIIDS 148 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~-~~~~~l~~l~~~l~~~~~~~lvVIDs 148 (226)
.++.-++|+||||+|||+++..++... +..+++++..... +. +....+..+....... .+.+|+||+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---------~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-~~~il~iDE 215 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---------NATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDQ 215 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---------TCEEEEECSCCC-------CHHHHHHHHHHHHHS-SSEEEEEET
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---------cCcEEEeeHHHhhccccchHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 345679999999999999999998764 4577888754211 01 1112233344444443 678999999
Q ss_pred CchhhhcCcCCh-HHHHHHHHHHHHHHHHHHH--HcCCEEEEeccc
Q 036464 149 IAFHFRHGFVDL-ALRTRVLSGIALKLMNLAK--KFSLALLEPNLA 191 (226)
Q Consensus 149 l~~l~~~~~~~~-~~r~~~l~~~~~~L~~la~--~~~~~vi~~nq~ 191 (226)
+..+........ .........++..+..+.. ..++.||.+.+.
T Consensus 216 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 216 VDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp GGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred chhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 998754321110 0012233344555544433 234566644443
No 118
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.26 E-value=6.2e-06 Score=79.19 Aligned_cols=113 Identities=13% Similarity=-0.017 Sum_probs=62.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCe--E-----EEEeccccCchH-----HHHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGK--A-----IYIGKCLGFYTE-----QSAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~--v-----lyi~~e~~~~~~-----~~~~l~~l~~~l~~ 137 (226)
+++|+++.|+||+|+||||++.+++....++....- .... + +|-.....+... -..-...+..++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 678999999999999999999998755432210000 0011 1 111100000000 00112233333433
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH-HHHHHHHHHcCCEEEEecccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA-LKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~-~~L~~la~~~~~~vi~~nq~~ 192 (226)
..++++|++|++++-... ..+. .++ ..++.++++.|++||++.|-.
T Consensus 750 a~~p~LlLLDEP~~GlD~-----~~~~----~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 750 ATSQSLVILDELGRGTST-----HDGI----AIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp CCTTCEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccCCCEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 457899999999965432 2232 333 345556666899999999875
No 119
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.25 E-value=1.2e-06 Score=80.29 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+|||||+.-++...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 7899999999999999999997666544
No 120
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.25 E-value=2e-06 Score=79.15 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+.-++...
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 7899999999999999999998777654
No 121
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.24 E-value=6.9e-06 Score=67.01 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=44.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhh--CCCceEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSE--HKDVKVVI 145 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~--~~~~~lvV 145 (226)
-+++| +.|+||||+|||+++..++.... .+.++++.... ..... ....+...++. ...+.+++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGV--GAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSCTTH--HHHHHHHHHHHHTTSSSEEEE
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC---------CCEEEeeHHHHHHHHhhH--HHHHHHHHHHHHHhcCCeEEE
Confidence 35666 89999999999999999887652 35677764310 00111 11223333332 12578999
Q ss_pred EcCCchhh
Q 036464 146 IDSIAFHF 153 (226)
Q Consensus 146 IDsl~~l~ 153 (226)
+|++..+.
T Consensus 114 ~Deid~l~ 121 (254)
T 1ixz_A 114 IDEIDAVG 121 (254)
T ss_dssp EETHHHHH
T ss_pred ehhhhhhh
Confidence 99997654
No 122
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.24 E-value=3.2e-06 Score=70.13 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999887764
No 123
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=1.1e-06 Score=78.11 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--ch-HHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YT-EQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~-~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
|+..+..-++|+||||+|||+++..++.... +.++++++..... +. +....+..+....... .+.+|+
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~ 232 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-KPSIIF 232 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEEECCC---------CCCTHHHHHHHHHHS-CSEEEE
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc-CCeEEE
Confidence 4455667799999999999999999998762 3466777643100 00 0001123333333333 689999
Q ss_pred EcCCchhhh
Q 036464 146 IDSIAFHFR 154 (226)
Q Consensus 146 IDsl~~l~~ 154 (226)
||++..+..
T Consensus 233 iDEid~l~~ 241 (444)
T 2zan_A 233 IDEIDSLCG 241 (444)
T ss_dssp ESCTTTTCC
T ss_pred EechHhhcc
Confidence 999998754
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=1.8e-05 Score=70.03 Aligned_cols=40 Identities=25% Similarity=0.163 Sum_probs=35.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++.++.++|++|+||||++..++.... ..+.+|+++++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~------~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK------KRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH------HTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEecCc
Confidence 478999999999999999999998876 4688999999664
No 125
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.20 E-value=9.1e-06 Score=77.30 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=68.2
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c-C-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G-F-YTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~-~-~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
|++++.-++|+||||+|||+++..++... +...+++++.. . . ..+....+..+.+..... .+.+++|
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---------~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-~p~il~i 303 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI 303 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---------TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---------CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhc-CCcEEEe
Confidence 68899999999999999999999987754 34567777431 0 1 111111222222222222 5789999
Q ss_pred cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
|++..+...... ...........++..+..+....++.++.+++-....+
T Consensus 304 DEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp ESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred ccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999977643221 11112223334444444333456778887776654444
No 126
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.20 E-value=1.2e-05 Score=73.02 Aligned_cols=29 Identities=28% Similarity=0.166 Sum_probs=25.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+.-++...
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998777543
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.19 E-value=5.1e-06 Score=71.78 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=61.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC------c-------hHHHHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF------Y-------TEQSAVINYLDKFVS 136 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~------~-------~~~~~~l~~l~~~l~ 136 (226)
..+|.++.|+||+|+||||++..++....- ..++.++.+.... +. . .......+.+...+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-----~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-----TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH-----HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC-----CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh
Confidence 367889999999999999999888776531 1134444443211 00 0 000112335556665
Q ss_pred hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
. +|+++++|+++. . +.+..+.+.+ +.|.+|++|.|.....
T Consensus 195 ~--~PdvillDEp~d---------~-------e~~~~~~~~~-~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 E--DPDIILVGEMRD---------L-------ETIRLALTAA-ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp S--CCSEEEESCCCS---------H-------HHHHHHHHHH-HTTCEEEEEESCSSHH
T ss_pred h--CcCEEecCCCCC---------H-------HHHHHHHHHH-hcCCEEEEEEccChHH
Confidence 3 699999999972 0 1223333444 4689999999987543
No 128
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.19 E-value=1.3e-05 Score=77.19 Aligned_cols=113 Identities=15% Similarity=-0.058 Sum_probs=61.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCC-CeE-------EEEeccccCc-hHH----HHHHHHHHHHHhh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG-GKA-------IYIGKCLGFY-TEQ----SAVINYLDKFVSE 137 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~-~~v-------lyi~~e~~~~-~~~----~~~l~~l~~~l~~ 137 (226)
+.+|+++.|+||+|+||||++.+++....++....-.. ... +|-.....+. ... ..-...+..++..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh
Confidence 56799999999999999999999865543221100000 000 1100000000 000 0112334444443
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHH-HHHHHHHHHHcCCEEEEecccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGI-ALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~-~~~L~~la~~~~~~vi~~nq~~ 192 (226)
..++++|++|++++-... ..+. .+ ...++.++++.++++|++.|-.
T Consensus 739 a~~~sLlLLDEp~~GlD~-----~~~~----~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTST-----YDGF----GLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp CCTTCEEEEESCSCSSCH-----HHHH----HHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred ccCCcEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 457899999999865422 2222 22 2334455556799999999874
No 129
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.19 E-value=8.9e-06 Score=67.62 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEEc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVID 147 (226)
+++| +.|+||||+|||+|+..++...- .+.++++.... .+ .+....+..+.+..... .+.++++|
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~---------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~~~D 110 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESG---------LNFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVIFFD 110 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTT---------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcC---------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeEeee
Confidence 5556 99999999999999999987653 24677775421 11 12212233333333232 57899999
Q ss_pred CCchhh
Q 036464 148 SIAFHF 153 (226)
Q Consensus 148 sl~~l~ 153 (226)
++..+.
T Consensus 111 eid~~~ 116 (274)
T 2x8a_A 111 EVDALC 116 (274)
T ss_dssp TCTTTC
T ss_pred hhhhhh
Confidence 998754
No 130
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.19 E-value=8.8e-06 Score=67.27 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=63.0
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---c----CchHH-------HH
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---G----FYTEQ-------SA 126 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~----~~~~~-------~~ 126 (226)
+.|+.+. +++|+++.|+||+|+||||++..++..+. | . ..+.+.+..... . .+..| ..
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~-~---~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~ 86 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYIN-Q-T---KSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKS 86 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHHH-H-H---CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhCC-C-C---CCCEEEEcCCcceeecCCcceeeeHHHhCCCHHH
Confidence 3555554 89999999999999999999998887653 1 1 134444443211 0 00000 11
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 127 VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 127 ~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+...+...+.. +++++++|+++ + ... ... .++ .+ +.|.+|+++.|..
T Consensus 87 l~~~la~aL~~--~p~illlDEp~-----D---~~~----~~~---~l~-~~-~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 87 FADALRAALRE--DPDVIFVGEMR-----D---LET----VET---ALR-AA-ETGHLVFGTLHTN 133 (261)
T ss_dssp HHHHHHHHHHH--CCSEEEESCCC-----S---HHH----HHH---HHH-HH-HTTCEEEEEECCS
T ss_pred HHHHHHHHHhh--CCCEEEeCCCC-----C---HHH----HHH---HHH-HH-ccCCEEEEEeCcc
Confidence 23445555654 58999999997 1 111 111 222 23 4688999888864
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=1.1e-06 Score=74.31 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=43.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEcCCc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
+.-+.|+||||+|||+|+..++..... ..+.+|+|++.. .+...+.. -..+.+.+....++++||||++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-----~~g~~v~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig 224 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-----KKGVSTTLLHFP--SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIG 224 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-----HSCCCEEEEEHH--HHHHHHHCCCC----CCTTHHHHTSSEEEEETCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-----hcCCcEEEEEHH--HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 577899999999999999999887651 146789998743 11111100 00011111111246899999997
Q ss_pred h
Q 036464 151 F 151 (226)
Q Consensus 151 ~ 151 (226)
.
T Consensus 225 ~ 225 (308)
T 2qgz_A 225 A 225 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.17 E-value=1.2e-05 Score=63.14 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh----CCCceEEEEcCCchh
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE----HKDVKVVIIDSIAFH 152 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~----~~~~~lvVIDsl~~l 152 (226)
+.|+||||+|||+++..++....-+ +.....+.++.......+. ....+..+... ..+..+||||++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMNASDERGIDV--VRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG----GGGGGEEEEETTCTTCHHH--HHHHHHHHHTSCCSTTCSCEEEEEETGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcc----ccccceEEeccccccChHH--HHHHHHHHhcccCCCccCceEEEEeChhhc
Confidence 8999999999999999998876411 1223456666432112221 22233333332 236789999999864
No 133
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.16 E-value=5e-06 Score=72.63 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 789999999999999999999887754
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.15 E-value=1.8e-05 Score=67.65 Aligned_cols=111 Identities=15% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH----------------------H
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA----------------------V 127 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~----------------------~ 127 (226)
++|.++.|.||+|+||||++..++.... ..+++|.+.+...+.. .+++. .
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~------~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v 200 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK------NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVA 200 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHH
Confidence 5799999999999999999999998765 2467788877553221 11111 1
Q ss_pred HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHH------------------HHHHHHHHHHHHHHcCCEEEEec
Q 036464 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRV------------------LSGIALKLMNLAKKFSLALLEPN 189 (226)
Q Consensus 128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~------------------l~~~~~~L~~la~~~~~~vi~~n 189 (226)
.+.+...... ..++++||.....-.. ......-.. -..++..++.+.++.++++|+++
T Consensus 201 ~e~l~~~~~~--~~d~vliDtaG~~~~~--~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 201 YDAIQHAKAR--GIDVVLIDTAGRSETN--RNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHHHHH--TCSEEEEEECCSCCTT--TCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHhc--cchhhHHhhccchhHH--HHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1222222222 4678888877632111 011000000 02455667778888999999999
Q ss_pred ccc
Q 036464 190 LAT 192 (226)
Q Consensus 190 q~~ 192 (226)
|+-
T Consensus 277 KlD 279 (328)
T 3e70_C 277 KLD 279 (328)
T ss_dssp CGG
T ss_pred CcC
Confidence 864
No 135
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.14 E-value=2.5e-06 Score=80.73 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=67.4
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
.|+++..=++++||||+|||.++..+|...- .+.+.++... .-..+.-..+..+-+..++. .+.+|+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---------~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~-~P~Iif 575 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFDKARQA-APCVLF 575 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---------CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT-CSEEEE
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---------CceEEeccchhhccccchHHHHHHHHHHHHHHc-CCceee
Confidence 5677777799999999999999999998764 3444444210 00111112344555555444 789999
Q ss_pred EcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEE-eccc
Q 036464 146 IDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLE-PNLA 191 (226)
Q Consensus 146 IDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~-~nq~ 191 (226)
||++.++...... +.....+.+++++..+..+....++.||. ||+.
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p 626 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS
T ss_pred chhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc
Confidence 9999988754321 11122345677777777766666777774 4443
No 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.14 E-value=2.2e-05 Score=70.39 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
+.+|.++.|+|++|+||||++..++.... ..+++|++.+...
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~------~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE------QQGKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh------hcCCeEEEecCcc
Confidence 67899999999999999999999987764 2456777776543
No 137
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.13 E-value=2.4e-05 Score=65.34 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-HH------------HHHHHHHhhCC
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-VI------------NYLDKFVSEHK 139 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-~l------------~~l~~~l~~~~ 139 (226)
+...+.|+||||+|||+++..++.... ..+.++++++........... .+ ..+...+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~- 118 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF------DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR- 118 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH------SCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHC-
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc------CCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhC-
Confidence 346799999999999999999998875 345678888864321111111 11 2344555544
Q ss_pred CceEEEEcCCchh
Q 036464 140 DVKVVIIDSIAFH 152 (226)
Q Consensus 140 ~~~lvVIDsl~~l 152 (226)
...+++||++..+
T Consensus 119 ~~~vl~lDEi~~l 131 (311)
T 4fcw_A 119 PYSVILFDAIEKA 131 (311)
T ss_dssp SSEEEEEETGGGS
T ss_pred CCeEEEEeChhhc
Confidence 4589999999754
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.13 E-value=1e-05 Score=68.07 Aligned_cols=74 Identities=18% Similarity=0.079 Sum_probs=50.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHHH--------------HHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAVI--------------NYLDKFV 135 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~l--------------~~l~~~l 135 (226)
.+|.++.|+|++|+||||++..++..... ..|.+|++++...+.. .+++... ..+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-----~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-----EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHH
Confidence 36889999999999999999999988752 2467999999764321 1222111 1223333
Q ss_pred hhCCCceEEEEcCCc
Q 036464 136 SEHKDVKVVIIDSIA 150 (226)
Q Consensus 136 ~~~~~~~lvVIDsl~ 150 (226)
....++++||||...
T Consensus 178 ~~~~~~dlvIiDT~G 192 (296)
T 2px0_A 178 ELFSEYDHVFVDTAG 192 (296)
T ss_dssp HHGGGSSEEEEECCC
T ss_pred HHhcCCCEEEEeCCC
Confidence 333468999999554
No 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=7.6e-06 Score=73.95 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=59.1
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH------HHHHHHh-------h
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN------YLDKFVS-------E 137 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~------~l~~~l~-------~ 137 (226)
++...++|+||||+|||+++..++... +..+++++.........+.. +. .+..++. .
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---------~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---------GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---------TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhc
Confidence 355689999999999999999998875 35788887653222211100 00 0111111 1
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
..+..+||||++..+..... ..+..|.++.++.++.+|++..
T Consensus 146 ~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~l~~~~~~iIli~~ 187 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQFCRKTSTPLILICN 187 (516)
T ss_dssp STTSEEEEECSGGGCCTTST-----------THHHHHHHHHHHCSSCEEEEES
T ss_pred cCCCeEEEEECCCccchhhH-----------HHHHHHHHHHHhcCCCEEEEEc
Confidence 23678999999997654321 1234455555666666665544
No 140
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.12 E-value=4.7e-05 Score=64.28 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=32.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
+|+++.|+||+|+||||++..++.... ..+++|.+.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~------~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ------NLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEeecC
Confidence 689999999999999999999998775 2456777776543
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.12 E-value=1e-05 Score=69.53 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=47.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccc-cCCC-CCeEEEEeccccC-chHHH---------------------HHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGL-GGKAIYIGKCLGF-YTEQS---------------------AVIN 129 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~-~~~vlyi~~e~~~-~~~~~---------------------~~l~ 129 (226)
+..+.|+||||+|||+++..++....-... ..+. +..++|+++.... ....+ ..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 124 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID 124 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 458999999999999999999887631000 0012 6688999853211 11110 1123
Q ss_pred HHHHHHhhCCCceEEEEcCCchhhh
Q 036464 130 YLDKFVSEHKDVKVVIIDSIAFHFR 154 (226)
Q Consensus 130 ~l~~~l~~~~~~~lvVIDsl~~l~~ 154 (226)
.+.+.+... +. +||||++..+..
T Consensus 125 ~l~~~l~~~-~~-vlilDEi~~l~~ 147 (384)
T 2qby_B 125 KIKNGTRNI-RA-IIYLDEVDTLVK 147 (384)
T ss_dssp HHHHHHSSS-CE-EEEEETTHHHHH
T ss_pred HHHHHhccC-CC-EEEEECHHHhcc
Confidence 333344333 33 999999997653
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.11 E-value=2.2e-05 Score=66.18 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=46.2
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC---CCceEEEEcCCch
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH---KDVKVVIIDSIAF 151 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~---~~~~lvVIDsl~~ 151 (226)
.++.++||||+|||+++..++... +.++++++..... .+. ....+..+.... .+.++||||++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---------~~~~~~i~~~~~~-~~~--i~~~~~~~~~~~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---------NADMMFVNGSDCK-IDF--VRGPLTNFASAASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---------TEEEEEEETTTCC-HHH--HHTHHHHHHHBCCCSSCEEEEEEESCCC
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---------CCCEEEEcccccC-HHH--HHHHHHHHHhhcccCCCCeEEEEECCcc
Confidence 578999999999999999998775 3578899865322 121 122233334332 2689999999986
Q ss_pred hh
Q 036464 152 HF 153 (226)
Q Consensus 152 l~ 153 (226)
+.
T Consensus 117 l~ 118 (324)
T 3u61_B 117 SG 118 (324)
T ss_dssp GG
T ss_pred cC
Confidence 53
No 143
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.10 E-value=7.5e-06 Score=81.68 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+.+.|+||+|+|||||+.-+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 7999999999999999999997776655
No 144
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.09 E-value=5.3e-06 Score=75.42 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.++|+++.|.||+|+|||||+..++..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 568999999999999999999877754
No 145
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.09 E-value=4.7e-05 Score=64.19 Aligned_cols=40 Identities=30% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
+++|+++.|.|++|+||||++..++.... | .+++|.+...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~-----~~g~V~l~g~ 136 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-N-----EGTKVLMAAG 136 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-H-----TTCCEEEECC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-----cCCeEEEEee
Confidence 56899999999999999999999988764 1 3456666553
No 146
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.08 E-value=2.5e-06 Score=85.12 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
+++|+.+.|+|++|+||||++.-+.+-+- +..+.++||+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------p~~G~I~iDG 1140 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYD-------TLGGEIFIDG 1140 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSC-------CSSSEEEETT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCcc-------CCCCEEEECC
Confidence 78999999999999999999977766542 3445566663
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.08 E-value=1.8e-05 Score=65.56 Aligned_cols=72 Identities=22% Similarity=0.116 Sum_probs=44.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
-+++| +.|+||||+|||+++..++.... .+.++++.... . ..+....+..+.+.... ..+.++++
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~i~~i 138 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGVGAARVRDLFETAKR-HAPCIVFI 138 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-SCSEEEEE
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC---------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh-cCCcEEeh
Confidence 35566 89999999999999999887652 35677764310 0 11111112222222222 25789999
Q ss_pred cCCchhh
Q 036464 147 DSIAFHF 153 (226)
Q Consensus 147 Dsl~~l~ 153 (226)
|++..+.
T Consensus 139 Deid~l~ 145 (278)
T 1iy2_A 139 DEIDAVG 145 (278)
T ss_dssp ETHHHHH
T ss_pred hhhHhhh
Confidence 9998654
No 148
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.08 E-value=2.9e-05 Score=71.59 Aligned_cols=29 Identities=31% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|+++.|.||+|+|||||+.-++...
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999999998776543
No 149
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.05 E-value=1.8e-05 Score=64.10 Aligned_cols=99 Identities=17% Similarity=0.078 Sum_probs=61.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchHHHHH----------HHHHHHHHhhCCC
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTEQSAV----------INYLDKFVSEHKD 140 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~~~~~----------l~~l~~~l~~~~~ 140 (226)
..|.+..++|+.|+||||-+++.+.++. ..+.+|+++....- .+...+.. +....++++...+
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~------~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~ 90 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG 90 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhcc
Confidence 3589999999999999999999999987 57888888863320 11111100 0000111111136
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++|+||+.+.+. + +.+++ ++..+.|+.||++..-+
T Consensus 91 ~dvViIDEaQF~~-----~-------v~el~----~~l~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 91 VAVIGIDEGQFFP-----D-------IVEFC----EAMANAGKTVIVAALDG 126 (234)
T ss_dssp CSEEEESSGGGCT-----T-------HHHHH----HHHHHTTCEEEEECCSB
T ss_pred CCEEEEEchhhhh-----h-------HHHHH----HHHHhCCCEEEEEeccc
Confidence 8999999999642 1 22333 33345899999987654
No 150
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=1.1e-05 Score=66.45 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=46.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCchHHHHHHHHHHHHHhh--CCCceEEEE
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFYTEQSAVINYLDKFVSE--HKDVKVVII 146 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~~~~~~~l~~l~~~l~~--~~~~~lvVI 146 (226)
.++..-+.|+||||+|||+++..++...- .+.++++... ....+ ......+...+.. ..+..+|+|
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~---------~~~~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vl~i 130 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN---------FPFIKICSPDKMIGFSE-TAKCQAMKKIFDDAYKSQLSCVVV 130 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT---------CSEEEEECGGGCTTCCH-HHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEeCHHHhcCCch-HHHHHHHHHHHHHHHhcCCcEEEE
Confidence 45566799999999999999999988742 3566665321 11111 1112223333322 236899999
Q ss_pred cCCchhhh
Q 036464 147 DSIAFHFR 154 (226)
Q Consensus 147 Dsl~~l~~ 154 (226)
|++..+..
T Consensus 131 DEid~l~~ 138 (272)
T 1d2n_A 131 DDIERLLD 138 (272)
T ss_dssp CCHHHHTT
T ss_pred EChhhhhc
Confidence 99997753
No 151
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.04 E-value=1.5e-05 Score=74.17 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=31.2
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++++++++|++++.++... ...++..|+++.+ .|.|||++.|-..
T Consensus 221 p~~~lLlLDEPtsgLD~~~---------~~~l~~~l~~l~~-~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 221 LTGVLYVLDEPSIGLHQRD---------NDRLIATLKSMRD-LGNTLIVVEHDED 265 (670)
T ss_dssp CCSCEEEEECTTTTCCGGG---------HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred CCCCEEEEECCccCCCHHH---------HHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3455999999998775421 2255666777754 5899999988653
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.03 E-value=3.7e-05 Score=64.99 Aligned_cols=42 Identities=24% Similarity=0.094 Sum_probs=36.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
..++.++.|+|++|+||||++..+|.... ..+++|++++...
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~------~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV------DEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH------hcCCEEEEEcccc
Confidence 35789999999999999999999998876 3577899998764
No 153
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.03 E-value=8.3e-06 Score=81.16 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+|||||+.-++..+
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999997776554
No 154
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.02 E-value=7.1e-06 Score=75.61 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+.-++..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 679999999999999999999877654
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.02 E-value=4.3e-05 Score=67.73 Aligned_cols=40 Identities=25% Similarity=0.140 Sum_probs=35.2
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++.++.++|++|+||||++..+|..+. ..+.+|+.+++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~------~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ------KRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCC
Confidence 368999999999999999999998887 5788999999764
No 156
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.02 E-value=7e-05 Score=64.66 Aligned_cols=40 Identities=30% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
+++|+++.|+|++|+||||++..++.... | .+++|.+...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~-----~~G~V~l~g~ 193 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-N-----EGTKVLMAAG 193 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH-H-----TTCCEEEECC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc-c-----cCCEEEEecc
Confidence 56899999999999999999999988764 1 3456666553
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=5.1e-05 Score=64.57 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHHHhc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.|+||||+||||++..++....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998654
No 158
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.01 E-value=5.1e-05 Score=72.01 Aligned_cols=113 Identities=15% Similarity=0.005 Sum_probs=62.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeE-----EEEeccccCchH-H----HHHHHHHHHHHhh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKA-----IYIGKCLGFYTE-Q----SAVINYLDKFVSE 137 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~v-----lyi~~e~~~~~~-~----~~~l~~l~~~l~~ 137 (226)
++|+++.|+||+|+||||++.+++.....+. .+. ....+ +|-.....+... . ..-...+...+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~ 683 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHN 683 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-cCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence 6899999999999999999999987643211 000 00011 111100000000 0 0112234445544
Q ss_pred CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
..++++|++|++++-.... .+... ....++.+.++.++++|++.|-..
T Consensus 684 a~~psLlLLDEp~~Gtd~~-----d~~~i---~~~ll~~l~~~~g~~vl~~TH~~e 731 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTY-----DGLSL---AWACAENLANKIKALTLFATHYFE 731 (800)
T ss_dssp CCTTEEEEEESCCCCSSSS-----HHHHH---HHHHHHHHHHTTCCEEEEECSCGG
T ss_pred ccCCCEEEEECCCCCCChh-----HHHHH---HHHHHHHHHhccCCeEEEEeCCHH
Confidence 5578999999997544321 12211 234555666556999999988753
No 159
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=98.01 E-value=1.1e-05 Score=64.66 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=64.1
Q ss_pred cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-ch-HHHH---------
Q 036464 58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YT-EQSA--------- 126 (226)
Q Consensus 58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~-~~~~--------- 126 (226)
+|.-.--.++.+--..|.+..|+|+.|+||||.+++.+.++. ..+.+|+.+....-. +. ..+.
T Consensus 12 ~~~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~------~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a 85 (219)
T 3e2i_A 12 SGLVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRLRRGI------YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA 85 (219)
T ss_dssp ---------------CCEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEEC-----------CBTTBCCEE
T ss_pred cCcccCCceEeeccCCceEEEEECCCCCCHHHHHHHHHHHHH------HcCCceEEEEeccCCcchhhhHHHhcCCceee
Confidence 343333344444346799999999999999998888887776 356778777532100 00 0000
Q ss_pred -HHHHHHHHHhh-CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464 127 -VINYLDKFVSE-HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE 198 (226)
Q Consensus 127 -~l~~l~~~l~~-~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~ 198 (226)
.+....+++.. ..++++|+||+.+.+ .. .++..|.+++ +.|+.|++..= ..++.+.
T Consensus 86 ~~v~~~~di~~~i~~~~dvV~IDEaQFf-~~-------------~~v~~l~~la-~~gi~Vi~~GL-d~DF~~~ 143 (219)
T 3e2i_A 86 INISKASEIMTHDLTNVDVIGIDEVQFF-DD-------------EIVSIVEKLS-ADGHRVIVAGL-DMDFRGE 143 (219)
T ss_dssp EEESSGGGGGGSCCTTCSEEEECCGGGS-CT-------------HHHHHHHHHH-HTTCEEEEEEE-SBCTTSC
T ss_pred EEeCCHHHHHHHHhcCCCEEEEechhcC-CH-------------HHHHHHHHHH-HCCCEEEEeec-ccccccC
Confidence 00111111211 236899999999953 21 3556777888 68999888663 3344444
No 160
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.01 E-value=3.5e-05 Score=71.80 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=31.2
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++-++. .. ...++..|+++.+ .|.|||++.|-..
T Consensus 564 ~p~llllDEPt~~LD~-----~~----~~~i~~~l~~l~~-~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHV-----DD----IARLLDVLHRLVD-NGDTVLVIEHNLD 607 (670)
T ss_dssp SCEEEEEESTTTTCCH-----HH----HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred CCcEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 4789999999986633 11 2356666777764 4899999888654
No 161
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.99 E-value=2.3e-05 Score=76.21 Aligned_cols=111 Identities=12% Similarity=-0.005 Sum_probs=60.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhcc-------ccccC--CCCCeEEEEeccccCch-----HHHHHHHHHHHHHhhCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQI-------PVEFG--GLGGKAIYIGKCLGFYT-----EQSAVINYLDKFVSEHK 139 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~l-------p~~~~--~~~~~vlyi~~e~~~~~-----~~~~~l~~l~~~l~~~~ 139 (226)
|+++.|+||+|+||||++.+++....+ |.... ..-.. ++......+.. .-..-+..+...+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~-I~~rig~~d~~~~~~stf~~em~~~a~al~la~ 867 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDR-VFTRLGASDRIMSGESTFFVELSETASILMHAT 867 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSB-EEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHH-HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence 899999999999999999998544321 11000 00001 11110000000 00011222333333445
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
++++|++|++++-... ..+. ..+...|+.++++.++++|++.|-..
T Consensus 868 ~~sLlLLDEp~~Gtd~-----~dg~---~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTAT-----FDGT---AIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp TTCEEEEECTTTTSCH-----HHHH---HHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCcEEEEECCCCCCCh-----HHHH---HHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 7899999999864422 2222 12345666676666999999988753
No 162
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=6.5e-05 Score=58.37 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|.||||+|||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888765
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.98 E-value=5.8e-05 Score=64.58 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.8
Q ss_pred CCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..|..++..++|+||||+|||+++..++....
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35666788999999999999999999998874
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.98 E-value=6.4e-05 Score=63.84 Aligned_cols=90 Identities=11% Similarity=-0.027 Sum_probs=53.2
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCeEEEEeccccCchHHH--H------------
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGKAIYIGKCLGFYTEQS--A------------ 126 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~vlyi~~e~~~~~~~~--~------------ 126 (226)
.|...+.+| ++..+.|+||||+|||+++..++..........+ ..-.++|+++.......+. .
T Consensus 35 ~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~ 112 (318)
T 3te6_A 35 PIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCG 112 (318)
T ss_dssp HHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--C
T ss_pred HHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCc
Confidence 344455554 4566799999999999999999988742110000 1346888886432111110 0
Q ss_pred --HHHHHHHHHhh----CCCceEEEEcCCchhh
Q 036464 127 --VINYLDKFVSE----HKDVKVVIIDSIAFHF 153 (226)
Q Consensus 127 --~l~~l~~~l~~----~~~~~lvVIDsl~~l~ 153 (226)
....+.+++.. ....-+|++|++..+.
T Consensus 113 ~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 113 DISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred hHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 12234444432 2357899999999765
No 165
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.97 E-value=1e-05 Score=67.89 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 789999999999999999999877654
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.95 E-value=6.4e-05 Score=59.38 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=64.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-----------cCc------------------hH
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-----------GFY------------------TE 123 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-----------~~~------------------~~ 123 (226)
....+.+++.+|.||||.|.-++..++ +.|.+|+++..-- ... .+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~------g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHH
Confidence 345677778889999999999999988 7899999995320 000 00
Q ss_pred HH----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464 124 QS----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA 191 (226)
Q Consensus 124 ~~----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~ 191 (226)
.. ..++.+.+.+.+ +++++||+|++.....-.+-+. .+++..|.+ +-.+..||+|.+.
T Consensus 101 ~~~~a~~~l~~a~~~l~~-~~yDlvILDEi~~al~~g~l~~-------~ev~~~l~~--Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLAD-PLLDMVVLDELTYMVAYDYLPL-------EEVISALNA--RPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTCSEEEEETHHHHHHTTSSCH-------HHHHHHHHT--SCTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCEEEEeCCCccccCCCCCH-------HHHHHHHHh--CcCCCEEEEECCC
Confidence 11 123344444443 5899999999986554443332 234444432 2345677777654
No 167
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.93 E-value=2e-06 Score=81.79 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEE
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVI 145 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvV 145 (226)
-|++++..++|+||||+|||+++..++...- .+.++++.... .+ .+....+..+.+..... .+.+++
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~---------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-~p~vl~ 575 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFDKARQA-APCVLF 575 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---------CCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH-CSBCCC
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhC---------CCEEEEechHhhhhhcCccHHHHHHHHHHHHhc-CCeEEE
Confidence 4678899999999999999999999998763 23444443210 01 11111233333333333 578999
Q ss_pred EcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464 146 IDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA 197 (226)
Q Consensus 146 IDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 197 (226)
||++..+....... .....+.+.+++..|..+....++.||.+++....++.
T Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~ 631 (806)
T 1ypw_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp CSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSC
T ss_pred EEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCH
Confidence 99999876433211 11223344555555555556667788877665544443
No 168
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.89 E-value=1.8e-05 Score=59.12 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=41.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
+.-+.|+|+||+|||+++..++.... ..+.+.+ +++.. ..+. ......+... ...+++||++..+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~v-~~~~~--~~~~----~~~~~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGR------NAQGEFV-YRELT--PDNA----PQLNDFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSST------TTTSCCE-EEECC--TTTS----SCHHHHHHHH-TTSCEEEECGGGS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCC------ccCCCEE-EECCC--CCcc----hhhhcHHHHc-CCcEEEEcChHHC
Confidence 44589999999999999998887654 3455666 76542 1111 1112222222 2368999999864
No 169
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.89 E-value=4.2e-05 Score=68.12 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=41.4
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.....+.||++.+|.+.. +-+|+...|.|++|+|||+|+..++.+..
T Consensus 130 ~~~e~l~TGir~ID~L~p--i~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 130 TEVEILETGIKVVDLLAP--YIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CSCCEECCSCHHHHHHSC--EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred ccCccccccchHHHHHhh--hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 346789999999999875 77889999999999999999999988765
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.88 E-value=0.00012 Score=61.88 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=44.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
..+.|+||||+|||+++..++... +.+.++++...... ...+...+....+..+|+||++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~vl~lDEi~~l 118 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---------SANIKTTAAPMIEK------SGDLAAILTNLSEGDILFIDEIHRL 118 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---------TCCEEEEEGGGCCS------HHHHHHHHHTCCTTCEEEEETGGGC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---------CCCeEEecchhccc------hhHHHHHHHhccCCCEEEEechhhc
Confidence 347999999999999999997764 34567776542221 2234445555457799999999965
No 171
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.87 E-value=1.3e-05 Score=79.75 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+|++|+|||||+.-++.-.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 7899999999999999999998777654
No 172
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.86 E-value=0.00011 Score=69.40 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=56.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEe-----ccccC-----chHHHHHHHHHHHHHhhCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIG-----KCLGF-----YTEQSAVINYLDKFVSEHK 139 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~-----~e~~~-----~~~~~~~l~~l~~~l~~~~ 139 (226)
|+++.|+||+|+||||++.+++....++.. |. ....+-|++ ....+ ...-......+...+....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~-G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~ 654 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQV-GSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEAT 654 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTT-TCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhccc-CceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999876532211 10 001111111 00000 0000111223444454445
Q ss_pred CceEEEEcCC---chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 140 DVKVVIIDSI---AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 140 ~~~lvVIDsl---~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
+++++++|++ ++.++. ......++..|++ .++++|++.|-.
T Consensus 655 ~p~LlLLDEpgrGTs~lD~--------~~~~~~i~~~L~~----~g~~vl~~TH~~ 698 (765)
T 1ewq_A 655 ENSLVLLDEVGRGTSSLDG--------VAIATAVAEALHE----RRAYTLFATHYF 698 (765)
T ss_dssp TTEEEEEESTTTTSCHHHH--------HHHHHHHHHHHHH----HTCEEEEECCCH
T ss_pred CCCEEEEECCCCCCCCcCH--------HHHHHHHHHHHHh----CCCEEEEEeCCH
Confidence 7899999999 443321 1111233333432 688999988864
No 173
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.86 E-value=1.6e-05 Score=70.38 Aligned_cols=84 Identities=27% Similarity=0.300 Sum_probs=55.0
Q ss_pred HHHhhCCC---C--CCC--eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHHH-----
Q 036464 63 LDNILGGG---I--GCR--EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAVI----- 128 (226)
Q Consensus 63 LD~~l~GG---i--~~G--~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~l----- 128 (226)
|..+++++ + ..+ .++.|+|++|+||||++..++.... ..+.+|++++...+.. .+++...
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~------~~G~kVllv~~D~~r~~a~~qL~~~~~~~g 154 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ------KRGLKPALIAADTYRPAAYEQLKQLAEKIH 154 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH------HHHCCEEEECCSCCCTTGGGSSHHHHHHSS
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEeccccCchHHHHHHHhhhccC
Confidence 45566654 4 223 5899999999999999999998886 3578899998763211 1111100
Q ss_pred --------------HHHHHHHhhCCCceEEEEcCCchh
Q 036464 129 --------------NYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 129 --------------~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
..+.+.+....++++||||....+
T Consensus 155 v~v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 155 VPIYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRH 192 (432)
T ss_dssp CCEECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSC
T ss_pred cceEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCc
Confidence 012233443457899999999853
No 174
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.85 E-value=2.9e-05 Score=67.62 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=40.1
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..+.||++.+|-++. +.+|+-+.|+|++|+|||+|+.+++..+.
T Consensus 156 ~~~~tGiraID~~~p--i~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 156 STEDLTARVLDLASP--IGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CTTHHHHHHHHHHSC--CBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred Ccccccceeeeeeee--ecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 568899999999986 88999999999999999999999988764
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=9.6e-05 Score=62.61 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=47.7
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHHHHHHHH-----
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVINYLDKF----- 134 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l~~l~~~----- 134 (226)
..|...+..|-.+. +.|+||||+|||+++..++.....|.. ....+++++.........+ ..+......
T Consensus 47 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (353)
T 1sxj_D 47 TVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDL---MKSRILELNASDERGISIVREKVKNFARLTVSKP 121 (353)
T ss_dssp HHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHH---HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCC
T ss_pred HHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcc---cccceEEEccccccchHHHHHHHHHHhhhccccc
Confidence 34444444442222 899999999999999999987642110 1235666764321122221 111111111
Q ss_pred ------HhhCCCceEEEEcCCchh
Q 036464 135 ------VSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 135 ------l~~~~~~~lvVIDsl~~l 152 (226)
....++.++|+||++..+
T Consensus 122 ~~~~~~~~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 122 SKHDLENYPCPPYKIIILDEADSM 145 (353)
T ss_dssp CTTHHHHSCCCSCEEEEETTGGGS
T ss_pred chhhcccCCCCCceEEEEECCCcc
Confidence 111235689999998864
No 176
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.84 E-value=6.5e-05 Score=62.43 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=44.1
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---chH--HHHHHHHHHH----HHhhCCCceEE
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTE--QSAVINYLDK----FVSEHKDVKVV 144 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---~~~--~~~~l~~l~~----~l~~~~~~~lv 144 (226)
+.-+.|+||||+|||+++..++.... .++++++..... +.. .-..+..+.. .+.......+|
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 120 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---------APFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIV 120 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---------CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEE
Confidence 34588999999999999999988763 357788754211 100 0011222211 11111136899
Q ss_pred EEcCCchhhhc
Q 036464 145 IIDSIAFHFRH 155 (226)
Q Consensus 145 VIDsl~~l~~~ 155 (226)
+||++..+...
T Consensus 121 ~iDEi~~l~~~ 131 (310)
T 1ofh_A 121 FIDEIDKICKK 131 (310)
T ss_dssp EEECGGGGSCC
T ss_pred EEEChhhcCcc
Confidence 99999977543
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.84 E-value=6.8e-05 Score=63.74 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=36.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
..++.++.|+|++|+||||++..++.... ..+++|++++...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~------~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA------ELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCC
Confidence 36789999999999999999999998876 3578999998654
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.81 E-value=9.6e-05 Score=58.39 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..+.|+||+|+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987764
No 179
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.81 E-value=0.00016 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=30.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.-+.|+|+||+|||+++..++.... ..+.+++++++.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~------~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS------RWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST------TTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC------ccCCCeEEEecC
Confidence 34588999999999999999887653 345688999865
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.80 E-value=0.00011 Score=65.17 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=43.5
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
..+.|+||||+|||+++..++.... .+.+.++.......+....+........ ..+..+|+||++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~---------~~f~~l~a~~~~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN---------ADVERISAVTSGVKEIREAIERARQNRN-AGRRTILFVDEVHRF 118 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT---------CEEEEEETTTCCHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC---------CCeEEEEeccCCHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhh
Confidence 4589999999999999999988753 3455566432222221122333332222 236799999999865
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.78 E-value=0.00022 Score=59.71 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=44.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-CCCceEEEEcCCchh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-HKDVKVVIIDSIAFH 152 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-~~~~~lvVIDsl~~l 152 (226)
...+.|+||||+|||+++..++.... .++++++....... ..+...+.. ..+..+|+||++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~---------~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG---------VNLRVTSGPAIEKP------GDLAAILANSLEEGDILFIDEIHRL 102 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT---------CCEEEECTTTCCSH------HHHHHHHTTTCCTTCEEEETTTTSC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEeccccCCh------HHHHHHHHHhccCCCEEEEECCccc
Confidence 35689999999999999999988653 45677775422221 233334443 346789999999854
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.78 E-value=0.0001 Score=63.72 Aligned_cols=81 Identities=20% Similarity=0.112 Sum_probs=49.8
Q ss_pred CCeeEEE--ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------------------HHHHHH
Q 036464 73 CREVTEI--GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------SAVINY 130 (226)
Q Consensus 73 ~G~i~~i--~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~--------------------~~~l~~ 130 (226)
.+..+.| +|++|+|||+++..++....-.....+.+..++|++......... ......
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 4567888 999999999999999877641000001246789998531111110 112334
Q ss_pred HHHHHhhCCCceEEEEcCCchhh
Q 036464 131 LDKFVSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 131 l~~~l~~~~~~~lvVIDsl~~l~ 153 (226)
+.+.+....++-+||||+++.+.
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHhcCCeEEEEEeCHHHHh
Confidence 44455433367899999999764
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.77 E-value=4.8e-05 Score=65.98 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=59.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchHH-------HHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTEQ-------SAVINYLDKFVS 136 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~~-------~~~l~~l~~~l~ 136 (226)
+++|.++.|+||+|+||||++..++..+. | ...+.++++..... .+..| ..+-..+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~----~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-Q----TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-H----HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-c----CCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 68899999999999999999998887664 1 01345555542110 00000 011234555555
Q ss_pred hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464 137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT 192 (226)
Q Consensus 137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~ 192 (226)
. +++++++|++... + .+...++ .+ ..|.+|+.|.|..
T Consensus 208 ~--~pd~illdE~~d~---------e------~~~~~l~-~~-~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 208 E--DPDVIFVGEMRDL---------E------TVETALR-AA-ETGHLVFGTLHTN 244 (372)
T ss_dssp S--CCSEEEESCCCSH---------H------HHHHHHH-HH-TTTCEEEECCCCC
T ss_pred h--CcCEEEECCCCCH---------H------HHHHHHH-HH-hcCCEEEEEECcc
Confidence 3 6899999999720 0 1111233 23 4678899888864
No 184
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.77 E-value=3.4e-05 Score=65.84 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=58.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC---ch--------HHHHHHHHHHHHHhhC
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF---YT--------EQSAVINYLDKFVSEH 138 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~---~~--------~~~~~l~~l~~~l~~~ 138 (226)
+++|+++.|+|++|+|||||+..++..+. ...+.+.++... .. .. ........+...+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~-------~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~-- 238 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP-------KEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR-- 238 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC-------TTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc-------CCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh--
Confidence 46799999999999999999987776542 234455555321 00 00 00112234444444
Q ss_pred CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
.+++++++|++++ . ++...|+.+. +-+.++++|.|...
T Consensus 239 ~~p~ilildE~~~-------~---------e~~~~l~~~~-~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRS-------S---------EAYDFYNVLC-SGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCS-------T---------HHHHHHHHHH-TTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCCh-------H---------HHHHHHHHHh-cCCCEEEEEEcccH
Confidence 3689999999985 1 1233455544 33456777777653
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=4.8e-05 Score=64.73 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=41.6
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCC--CeEEEEeccccCchHHHHHHHHHHHHHhhC----CCceEEEEcCCc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG--GKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIA 150 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~--~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~ 150 (226)
+.|+||||+|||+++..++.... +.. ..++.++.......+.+ .+.+..+.... .+.+++|||++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~------~~~~~~~~~~~~~~~~~~~~~i--r~~i~~~~~~~~~~~~~~~viiiDe~~ 120 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY------GKNYSNMVLELNASDDRGIDVV--RNQIKDFASTRQIFSKGFKLIILDEAD 120 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH------TTSHHHHEEEECTTSCCSHHHH--HTHHHHHHHBCCSSSCSCEEEEETTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHc------CCCccceEEEEcCcccccHHHH--HHHHHHHHhhcccCCCCceEEEEeCCC
Confidence 89999999999999999998864 122 23555554311112221 12233333221 247999999998
Q ss_pred hh
Q 036464 151 FH 152 (226)
Q Consensus 151 ~l 152 (226)
.+
T Consensus 121 ~l 122 (340)
T 1sxj_C 121 AM 122 (340)
T ss_dssp GS
T ss_pred CC
Confidence 64
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.75 E-value=0.00011 Score=61.86 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
.++.|+|++|+|||+|+.+++... +++|++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEe
Confidence 689999999999999999988663 1788874
No 187
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.74 E-value=0.0001 Score=64.27 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+.+| ++.|+|++|+|||+|+..+..-
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 37889 9999999999999999776543
No 188
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.73 E-value=0.00026 Score=63.74 Aligned_cols=51 Identities=27% Similarity=0.248 Sum_probs=38.0
Q ss_pred hHHHhhCC---CC----CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 62 DLDNILGG---GI----GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 62 ~LD~~l~G---Gi----~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
+|..++++ ++ .+..++.|+|+||+||||++..++..+. ..+.+|+.++...
T Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~------~~G~kVllVd~D~ 139 (504)
T 2j37_W 82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQ------RKGWKTCLICADT 139 (504)
T ss_dssp HHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEECC
T ss_pred HHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEeccc
Confidence 35556654 23 2356899999999999999999998876 3578899998753
No 189
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.72 E-value=4e-05 Score=68.12 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=49.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhh-----CCCce
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSE-----HKDVK 142 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~-----~~~~~ 142 (226)
|..++.-++|+||||+|||+++..++...- .....++++.... .+..... .+.+.+.. ...+.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~a~~~~~~~~~ 128 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELG-------SKVPFCPMVGSEVYSTEIKKTE---VLMENFRRAIGLRIKETK 128 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHC-------TTSCEEEEEGGGGCCSSSCHHH---HHHHHHHHTEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhC-------CCceEEEEeHHHHHHHhhhhhH---HHHHHHHHHHhhhhcCCc
Confidence 455556689999999999999999998863 3356777775421 1111111 12333322 13679
Q ss_pred EEEEcCCchhhhc
Q 036464 143 VVIIDSIAFHFRH 155 (226)
Q Consensus 143 lvVIDsl~~l~~~ 155 (226)
+|+||++.++...
T Consensus 129 il~iDEid~l~~~ 141 (456)
T 2c9o_A 129 EVYEGEVTELTPC 141 (456)
T ss_dssp EEEEEEEEEEEEC
T ss_pred EEEEechhhcccc
Confidence 9999999987754
No 190
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=0.00015 Score=60.53 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=41.9
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC----CCceEEEEcCCchh
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFH 152 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~~l 152 (226)
+.|+||||+|||+++..++..+.-+ .....+++++.. .....-.....+..+.... .+..+||||++..+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 122 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGE----NWRHNFLELNAS--DERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGG----GHHHHEEEEETT--CHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC----cccCceEEeecc--ccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC
Confidence 8999999999999999999886311 112346666643 1111000112233333221 35789999999864
No 191
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.70 E-value=3.5e-05 Score=57.47 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=38.8
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
.-+.|+|+||+|||+++..++... . +++++++. ...+.. ....+... +..+++||++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~---------~-~~~~~~~~--~~~~~~-----~~~~~~~a-~~~~l~lDei~~l 87 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG---------T-PWVSPARV--EYLIDM-----PMELLQKA-EGGVLYVGDIAQY 87 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT---------S-CEECCSST--THHHHC-----HHHHHHHT-TTSEEEEEECTTC
T ss_pred CcEEEECCCCccHHHHHHHHHHhC---------C-CeEEechh--hCChHh-----hhhHHHhC-CCCeEEEeChHHC
Confidence 348999999999999997665432 1 67777654 222211 23334433 3479999999864
No 192
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=0.00023 Score=59.98 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=28.5
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++.|+|++|+|||+|+.+++.... ..++|++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---------~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEEch
Confidence 5999999999999999999988753 247888854
No 193
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.70 E-value=9.4e-05 Score=62.10 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=35.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
+|.++.++|++|+||||++..+|.... ..+++|++++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~------~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK------GKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH------HTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEecCCc
Confidence 689999999999999999999998876 3578999999654
No 194
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.69 E-value=5.2e-05 Score=65.17 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=39.5
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.+.+.||+..||.++. +.+|+++.|.|++|+|||||+..++....
T Consensus 52 ~~~~~tg~~ald~ll~--i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 52 DQPFILGVRAIDGLLT--CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CSEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceecCCCCEEEEeeee--ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567789999999975 99999999999999999999888887753
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=0.00013 Score=69.74 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=53.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEeccccC----c-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLGF----Y-TEQSAVINYLDKFVSEHKDVKVVII 146 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~~----~-~~~~~~l~~l~~~l~~~~~~~lvVI 146 (226)
.-+.|+||||+|||+++..++..+.- |.. -.+.++++++..... + .+....+..+-..+....++.+++|
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~I 269 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG--LKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 269 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT--STTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchh--hcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34789999999999999999988741 111 126688888754211 1 0111122333333333335789999
Q ss_pred cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464 147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189 (226)
Q Consensus 147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n 189 (226)
|++..+...... .. -....+.|+.+..+.++.+|.+.
T Consensus 270 DEi~~l~~~~~~--~g----~~~~~~~L~~~l~~~~i~~I~at 306 (854)
T 1qvr_A 270 DELHTVVGAGKA--EG----AVDAGNMLKPALARGELRLIGAT 306 (854)
T ss_dssp CCC-------------------------HHHHHTTCCCEEEEE
T ss_pred ecHHHHhccCCc--cc----hHHHHHHHHHHHhCCCeEEEEec
Confidence 999977532111 00 11334556666666777777554
No 196
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.69 E-value=0.00018 Score=67.28 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=53.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG 80 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~ 80 (226)
|++++|+|++...+.|++.||.+...+-. + .++. ++..|..+.++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~--------------~-----------------~i~~----~~~~~~~~lv~ 52 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQT--------------E-----------------AVKK----GLLEGNRLLLT 52 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHH--------------H-----------------HHHT----TTTTTCCEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHH--------------H-----------------HHHH----HhcCCCcEEEE
Confidence 67889999999999999999876433210 1 1111 23346789999
Q ss_pred cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
||+|+|||+.+...+..... ..+.+++|+.
T Consensus 53 apTGsGKT~~~~l~il~~~~-----~~~~~il~i~ 82 (715)
T 2va8_A 53 SPTGSGKTLIAEMGIISFLL-----KNGGKAIYVT 82 (715)
T ss_dssp CCTTSCHHHHHHHHHHHHHH-----HSCSEEEEEC
T ss_pred cCCCCcHHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 99999999998777665442 2457888887
No 197
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00018 Score=60.07 Aligned_cols=70 Identities=23% Similarity=0.221 Sum_probs=43.1
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-----CCCceEEEEcCCch
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-----HKDVKVVIIDSIAF 151 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-----~~~~~lvVIDsl~~ 151 (226)
+.|+||+|+|||+++..++....-+ .....+++++.......+.+ .+.+..+... ..+.++||||++..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR----SYADGVLELNASDDRGIDVV--RNQIKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG----GHHHHEEEECTTSCCSHHHH--HTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC----cccCCEEEecCccccChHHH--HHHHHHHHhccccCCCCCceEEEEECccc
Confidence 8999999999999999999886311 11235777775421122221 1222233211 22478999999986
Q ss_pred h
Q 036464 152 H 152 (226)
Q Consensus 152 l 152 (226)
+
T Consensus 119 l 119 (323)
T 1sxj_B 119 M 119 (323)
T ss_dssp S
T ss_pred C
Confidence 5
No 198
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.66 E-value=7.3e-05 Score=66.25 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=38.4
Q ss_pred cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
...+.||.+.||.++. +.+|+.+.|.|++|+|||||+..++...
T Consensus 138 ~~~~~tg~~vld~vl~--i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 138 EHVLDTGVRAINALLT--VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CSBCCCSCHHHHHHSC--CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceecCCCceEEeeeEE--ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4556678999999965 9999999999999999999988888775
No 199
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.66 E-value=0.00038 Score=58.20 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.+.++.++|..|+||||++.++|...+ ..+.+|+.||..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La------~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS------ILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence 4567888889999999999999999987 468899999954
No 200
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.65 E-value=0.00029 Score=68.01 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
+++|+++.|.||+|+|||||+..++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999998884
No 201
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.65 E-value=0.00028 Score=67.81 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=32.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~ 195 (226)
+++++|+|++++.++. . ....++..|+++++ .|.|||++.|-...+
T Consensus 826 ~p~LLILDEPTsGLD~-----~----~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i 871 (916)
T 3pih_A 826 GRTLYILDEPTVGLHF-----E----DVRKLVEVLHRLVD-RGNTVIVIEHNLDVI 871 (916)
T ss_dssp SSEEEEEESTTTTCCH-----H----HHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred CCCEEEEECCCCCCCH-----H----HHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 4689999999986633 1 23356667777764 588888888865433
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.65 E-value=0.00052 Score=58.33 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=45.4
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccC---------------CCCCeEEEEeccccCchHHHHHHHHHHHHHhhC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---------------GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH 138 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---------------~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~ 138 (226)
...++++||+|+|||+++..++....-+.... +....+.+++.+..........+..+.+.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 34699999999999999999998875211000 011235566543100001112233344444322
Q ss_pred ---CCceEEEEcCCchh
Q 036464 139 ---KDVKVVIIDSIAFH 152 (226)
Q Consensus 139 ---~~~~lvVIDsl~~l 152 (226)
.+.+++|||+...+
T Consensus 104 ~~~~~~kvviIdead~l 120 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALL 120 (334)
T ss_dssp CTTSSCEEEEESCGGGB
T ss_pred cccCCcEEEEECchhhc
Confidence 35799999999865
No 203
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=3.1e-05 Score=60.03 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
++++|.++.|.|+||+||||++..++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999988764
No 204
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.64 E-value=5.4e-05 Score=67.49 Aligned_cols=28 Identities=25% Similarity=0.039 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 6799999999999999999998877643
No 205
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.61 E-value=0.00031 Score=60.51 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=42.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhC------CCceE
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEH------KDVKV 143 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~------~~~~l 143 (226)
+....+.|+||||+|||+++..++... +.++++++.......... ..-..+...+... ....+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 140 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGI 140 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSE
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeE
Confidence 345568999999999999999998775 245677765421100000 0001122222111 14689
Q ss_pred EEEcCCchhhh
Q 036464 144 VIIDSIAFHFR 154 (226)
Q Consensus 144 vVIDsl~~l~~ 154 (226)
++||++..+..
T Consensus 141 l~iDEi~~l~~ 151 (376)
T 1um8_A 141 VFIDEIDKISR 151 (376)
T ss_dssp EEEETGGGC--
T ss_pred EEEcCHHHHhh
Confidence 99999997653
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.60 E-value=0.00017 Score=68.06 Aligned_cols=69 Identities=25% Similarity=0.217 Sum_probs=46.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH 152 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l 152 (226)
.+.|+||||+|||+++..++.... +.+.++++++...+....... ...+...+... ...+|+||++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~------~~~~~~i~i~~s~~~~~~~~~-~~~l~~~~~~~-~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF------GDEESMIRIDMSEYMEKHSTS-GGQLTEKVRRK-PYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH------SCTTCEEEEEGGGGCSSCCCC----CHHHHHHC-SSSEEEEECGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc------CCCcceEEEechhcccccccc-cchhhHHHHhC-CCeEEEEeCcccc
Confidence 689999999999999999998875 467789999964211000000 12233344443 5789999999753
No 207
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.55 E-value=0.00018 Score=67.42 Aligned_cols=75 Identities=29% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG 80 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~ 80 (226)
|++++|||++...+.|++.||.+...+ |.. .++. ++..|..+.++
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~-------------------Q~~------------~i~~----~~~~~~~~lv~ 45 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPP-------------------QAE------------ALKS----GILEGKNALIS 45 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHH-------------------HHH------------HHTT----TGGGTCEEEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHH-------------------HHH------------HHHH----HhcCCCcEEEE
Confidence 789999999999999999999764332 111 0111 12336789999
Q ss_pred cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
||+|+|||..+...+..... ..+.+++|+.
T Consensus 46 apTGsGKT~~~~l~il~~~~-----~~~~~~l~i~ 75 (720)
T 2zj8_A 46 IPTASGKTLIAEIAMVHRIL-----TQGGKAVYIV 75 (720)
T ss_dssp CCGGGCHHHHHHHHHHHHHH-----HHCSEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHH-----hCCCEEEEEc
Confidence 99999999887555544332 1356788887
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.54 E-value=8.5e-05 Score=57.49 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=34.5
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.||+-.. ..+|.++.|.|+||+||||++..++.... ..+.++.+++.+
T Consensus 3 ~~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~------~~~~~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQ------KEGYRVEVLDGD 50 (186)
T ss_dssp -----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred ccccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEeeHH
Confidence 4555443 35789999999999999999999988764 246678888753
No 209
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.54 E-value=0.00068 Score=55.51 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++.++.|+|+|||||||++..++.... ..+..+++++.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~------~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS------KNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH------hCCCEEEEECch
Confidence 467899999999999999999988743 234556666643
No 210
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.54 E-value=0.00031 Score=61.93 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++.++.++|++|+||||++..++.... ..+++|+.++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~------~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK------GKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEeeccc
Confidence 688999999999999999999998886 4678999999764
No 211
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.54 E-value=0.00027 Score=60.29 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..+.|+||+|+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 212
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.53 E-value=0.001 Score=56.34 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++...|.+|+||||++.++|...+ ..+.+|+.||+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA------~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMA------RSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH------HCCCcEEEEeCC
Confidence 7889999999999999999999988 468899999954
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=0.00022 Score=68.15 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=46.8
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---HH-H---------HHHHHHHHHHhhCCCc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT---EQ-S---------AVINYLDKFVSEHKDV 141 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~---~~-~---------~~l~~l~~~l~~~~~~ 141 (226)
..+.|+||||+|||+++..++.... +.+.+++++++..+... .. + .....+...+... ..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~------~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~-~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF------DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR-PY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH------SSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC-SS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc------CCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhC-CC
Confidence 5789999999999999999998875 34678888885421100 00 0 0012344445544 56
Q ss_pred eEEEEcCCchh
Q 036464 142 KVVIIDSIAFH 152 (226)
Q Consensus 142 ~lvVIDsl~~l 152 (226)
.+|+||++..+
T Consensus 662 ~vl~lDEi~~l 672 (854)
T 1qvr_A 662 SVILFDEIEKA 672 (854)
T ss_dssp EEEEESSGGGS
T ss_pred eEEEEeccccc
Confidence 89999999753
No 214
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.51 E-value=0.0003 Score=63.02 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=44.9
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
....++.||++.+|-++- +-+|+-..|.|++|+|||++++....+.. +.+..|+|+-
T Consensus 154 ~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~~~------~~dv~~V~~~ 210 (515)
T 2r9v_A 154 PVDTPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQK------GQGVYCIYVA 210 (515)
T ss_dssp CCCSEECCSCHHHHHHSC--EETTCBEEEEEETTSSHHHHHHHHHHTTT------TTTEEEEEEE
T ss_pred CCCcchhcCccccccccc--cccCCEEEEEcCCCCCccHHHHHHHHHhh------cCCcEEEEEE
Confidence 346789999999999986 88899999999999999999876555544 2333556654
No 215
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.51 E-value=0.00023 Score=61.90 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=39.9
Q ss_pred CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..+.||+..+|-++- +-+|+-..|.|++|+|||+|+.+++.++.
T Consensus 157 e~~~tGiraID~l~P--igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP--IGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp STTCHHHHHHHHHSC--CBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cchhccchhhhhccc--ccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 567899999999986 77899999999999999999999998764
No 216
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00076 Score=56.81 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cCchHHHHHHHHHHHHHhhC---CCceEEEEcCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GFYTEQSAVINYLDKFVSEH---KDVKVVIIDSI 149 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~~~~~~~~l~~l~~~l~~~---~~~~lvVIDsl 149 (226)
...++++||||+|||+++..++..+.. +......+++++.+. ....++ +..+.+.+... .+.+++|||+.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~---~~~~~~d~~~l~~~~~~~~id~---ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEIDPEGENIGIDD---IRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEECCSSSCBCHHH---HHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCch---hhccCCCEEEEcCCcCCCCHHH---HHHHHHHHhhccccCCceEEEeccH
Confidence 468999999999999999999876421 111234677787542 112222 33344444332 25799999999
Q ss_pred chh
Q 036464 150 AFH 152 (226)
Q Consensus 150 ~~l 152 (226)
..+
T Consensus 92 d~l 94 (305)
T 2gno_A 92 ERM 94 (305)
T ss_dssp GGB
T ss_pred HHh
Confidence 865
No 217
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.50 E-value=0.00068 Score=61.08 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=33.7
Q ss_pred EEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 143 lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+||||+++.++.. ....+...+..|.+..+..|+.+|++.|--.
T Consensus 300 vlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMT-------VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999987642 1234556777788888899999999988754
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.50 E-value=0.00036 Score=59.29 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=42.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF 153 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~ 153 (226)
..+.|+||||+||||++..++...- .++.+.+++....... +...+......++++||++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~---------~~~~~~sg~~~~~~~~------l~~~~~~~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ---------TNIHVTSGPVLVKQGD------MAAILTSLERGDVLFIDEIHRLN 115 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT---------CCEEEEETTTCCSHHH------HHHHHHHCCTTCEEEEETGGGCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEechHhcCHHH------HHHHHHHccCCCEEEEcchhhcC
Confidence 5689999999999999999988763 2344555543222222 22223333356899999998654
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=7.3e-05 Score=57.83 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|..+|.++.|+||+|+|||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999988764
No 220
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=97.49 E-value=0.00022 Score=47.13 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ 47 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~ 47 (226)
+||++|.|+++..+.|+++||+|+.|++..+..||.+ +.++.-++.+
T Consensus 9 ~~Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 9 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp CBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999988 3444444433
No 221
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.45 E-value=0.00012 Score=57.40 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++|.++.|.|++|+||||++..++.... ..+..++|++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCc
Confidence 6899999999999999999999988763 123445688754
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.45 E-value=0.00012 Score=56.20 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=31.2
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++|.++.|+|++|+||||++..++.... ..+.++++++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~------~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV------CHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh------hCCCcEEEECCh
Confidence 6799999999999999999999887652 134567777743
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.44 E-value=1.8e-05 Score=64.90 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEecCCCCChHHHHHHHHHHhc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.|+||||+|||+++..++....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.44 E-value=0.00041 Score=61.33 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCL 118 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~ 118 (226)
..++.++|++|+||||++.++|..+. .. +.+|+.++...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~------~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLR------EKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHH------HTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH------HhcCCeEEEEecCC
Confidence 46889999999999999999999887 35 88999999764
No 225
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.43 E-value=0.00032 Score=62.84 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=44.9
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
...++.||++.+|-++- +-+|+-..|.|++|+|||++++....+.. +.+..++|+-
T Consensus 143 v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~ 198 (507)
T 1fx0_A 143 VYEPLQTGLIAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQ------GQNVICVYVA 198 (507)
T ss_dssp CCSBCCCSCTTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCC------TTTCEEEEEE
T ss_pred cCCcccccceecccccc--cccCCEEEEecCCCCCccHHHHHHHHHhh------cCCcEEEEEE
Confidence 45779999999999986 88899999999999999999876655554 3344567765
No 226
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.42 E-value=0.00018 Score=47.17 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE 49 (226)
Q Consensus 3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~ 49 (226)
|..|+ +++.+..+|.++||+|++++..+++.+|.. .-..|.++....
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHH
Confidence 56777 999999999999999999999999999988 335566665544
No 227
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.40 E-value=0.00066 Score=60.89 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=39.3
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
....++.||++.+|-++- +-+|+-..|.|++|+|||++++....+..
T Consensus 141 ~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 141 SVREPMQTGIKAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp CCCSBCCCSCHHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred ccCccccccceeeccccc--cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 345779999999999986 88999999999999999999775544443
No 228
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.40 E-value=5.3e-05 Score=65.08 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=34.0
Q ss_pred cCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHH
Q 036464 53 LARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGI 92 (226)
Q Consensus 53 ~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~ 92 (226)
...++||++.||.+|+ ||++.|.+++|.|+ |||.++.
T Consensus 18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 5679999999999999 99999999999998 8988883
No 229
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.40 E-value=0.0004 Score=59.55 Aligned_cols=74 Identities=22% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhC------CCceEE
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEH------KDVKVV 144 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~------~~~~lv 144 (226)
++.-++|+||||+|||++|..++...- .+.+.++.......... .....+...+... ....+|
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~---------~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl 120 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD---------VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 120 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC---------CCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEE
Confidence 456689999999999999999988752 45666664311100000 0012222332221 145799
Q ss_pred EEcCCchhhhc
Q 036464 145 IIDSIAFHFRH 155 (226)
Q Consensus 145 VIDsl~~l~~~ 155 (226)
+||++..+...
T Consensus 121 ~lDEid~l~~~ 131 (363)
T 3hws_A 121 YIDQIDKISRK 131 (363)
T ss_dssp EEECHHHHCCC
T ss_pred EEeChhhhccc
Confidence 99999976543
No 230
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=9.3e-05 Score=58.50 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999999888765
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.39 E-value=9.9e-05 Score=57.71 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|.++.|.||+|+||||++..++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999888763
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.38 E-value=0.00015 Score=55.31 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999999888776
No 233
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.38 E-value=0.0001 Score=58.70 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=32.3
Q ss_pred chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 60 CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 60 ~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+..|...+. |+|+...++|+||||+|||++|+.++..+
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 566666675 58888889999999999999999998876
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.36 E-value=0.00015 Score=55.97 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|.+.+.++.|+|+||+||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46778999999999999999999998765
No 235
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.35 E-value=0.0025 Score=54.59 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=35.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
-+...++.+.|.+|+||||++.++|...+ ..+.+|+.||+.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA------~~G~rVLlvD~D 63 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLA------EKGLKVVIVSTD 63 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHH------HSSCCEEEEECC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence 45567888999999999999999999988 468899999954
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=0.00061 Score=57.23 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.+.-+.|+|+||+|||+++..++.... ..+.+.+++++.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~------~~~~~~v~v~~~ 62 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSA------RSDRPLVTLNCA 62 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSS------CSSSCCCEEECS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCc------ccCCCeEEEeCC
Confidence 345689999999999999999988654 346678888854
No 237
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=97.34 E-value=0.00033 Score=46.90 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=35.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR 37 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~ 37 (226)
+||++|.|+.+..+.|+++||+|+.|++..+..||.+
T Consensus 16 ~~Ie~L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlk 52 (79)
T 3gfk_B 16 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMK 52 (79)
T ss_dssp CBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTT
T ss_pred CcHHHhCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHH
Confidence 6899999999999999999999999999999999988
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00014 Score=56.85 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|.++.|+|++||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999887765
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.33 E-value=0.00066 Score=57.96 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+.+|.++.|.|+||+|||||+..++.... ..++++.++.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~------~~~g~v~i~~ 90 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT------AAGHKVAVLA 90 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh------hCCCEEEEEE
Confidence 67899999999999999999998886653 1345565554
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.30 E-value=0.00017 Score=56.92 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=25.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.++|.++.|.||+|+|||||+..++....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998887763
No 241
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.29 E-value=0.00036 Score=54.80 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++|.++.|+|++|+||||++..++.... ..++.+.+++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~------~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR------EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh------hcCCeEEEeccC
Confidence 57789999999999999999998887653 235667777543
No 242
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.29 E-value=0.00014 Score=58.11 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+|||||+..++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 7889999999999999999999888754
No 243
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.28 E-value=0.00076 Score=59.21 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~ 150 (226)
+...++.|+|+|||||||++..++... +..+++...... .......+...+... ..+|||...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----------~~~~i~~D~~~~--~~~~~~~~~~~l~~g---~~vIiD~~~ 318 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------GYVHVNRDTLGS--WQRCVSSCQAALRQG---KRVVIDNTN 318 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----------TCEECCGGGSCS--HHHHHHHHHHHHHTT---CCEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----------CcEEEccchHHH--HHHHHHHHHHHHhcC---CcEEEeCCC
Confidence 346899999999999999999887654 245666543221 112334455555542 347788764
No 244
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=97.27 E-value=0.00052 Score=46.66 Aligned_cols=47 Identities=9% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ 47 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~ 47 (226)
+||++|.|+.+..+.|+++||+|+.|++..+..||.+ +.++..++.+
T Consensus 12 ~~I~~L~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 12 RPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp SBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 5899999999999999999999999999999999988 4445545443
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.26 E-value=0.0021 Score=60.49 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=44.6
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--------------chHHHHHHHHHHHHHhhCCC
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------YTEQSAVINYLDKFVSEHKD 140 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------------~~~~~~~l~~l~~~l~~~~~ 140 (226)
..+.|+||||+|||+++..++... +.++++++...+. +.. ......+...+... .
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---------~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g-~~~~~~l~~~~~~~-~ 557 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---------GIELLRFDMSEYMERHTVSRLIGAPPGYVG-FDQGGLLTDAVIKH-P 557 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---------TCEEEEEEGGGCSSSSCCSSSCCCCSCSHH-HHHTTHHHHHHHHC-S
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---------cCCEEEEechhhcchhhHhhhcCCCCCCcC-ccccchHHHHHHhC-C
Confidence 468999999999999999998875 2467788754210 111 01112344555554 5
Q ss_pred ceEEEEcCCchh
Q 036464 141 VKVVIIDSIAFH 152 (226)
Q Consensus 141 ~~lvVIDsl~~l 152 (226)
..+|+||++..+
T Consensus 558 ~~vl~lDEi~~~ 569 (758)
T 1r6b_X 558 HAVLLLDEIEKA 569 (758)
T ss_dssp SEEEEEETGGGS
T ss_pred CcEEEEeCcccc
Confidence 799999999853
No 246
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=97.26 E-value=0.00069 Score=45.86 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHH
Q 036464 3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDM 45 (226)
Q Consensus 3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l 45 (226)
++.+| |++..+++|+++|++|+.|++..++.+|.+ .+.++.++
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l 53 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVAL 53 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHH
Confidence 46667 999999999999999999999999999998 45555444
No 247
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.26 E-value=0.00046 Score=63.18 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=30.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
+.++.|.|+||+|||+++..++.... ..+.+|++...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~------~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE------SLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEecC
Confidence 57899999999999999999887765 35678887763
No 248
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.25 E-value=0.00028 Score=58.67 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=41.7
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh----CCCceEEEEcCCchh
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE----HKDVKVVIIDSIAFH 152 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~----~~~~~lvVIDsl~~l 152 (226)
+.|+||||+|||+++..++..+.-+ +....+++++.......+.+ .+.+..+... ..+.++||||++..+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMNASDERGIDVV--RHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTT----CHHHHCEEEETTSTTCTTTS--SHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCC----cccCCeEEEeCccccChHHH--HHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence 8999999999999999999886310 11234666764321111111 1112222211 135789999999864
No 249
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.24 E-value=0.00081 Score=59.57 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=42.0
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.....+.||++.+|-++- +-+|+-..|.|++|+|||+|+.+++....
T Consensus 126 ~~~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 126 KPEQFIQTGISTIDVMNT--LVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CCCCBCBCSCHHHHTTSC--CBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CccccccCcceeeecccc--cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 446789999999999986 78899999999999999999999988764
No 250
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.24 E-value=0.0035 Score=57.13 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=34.2
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+-+||||++..++... . ..+...+..|.+..+.+|+.+|++.|--.
T Consensus 344 ~ivvVIDE~~~L~~~~--~-----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV--G-----KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEEEESCCTTHHHHT--C-----HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred cEEEEEeCHHHHhhhh--h-----HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 3589999999876532 1 23445667788888899999999998754
No 251
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.23 E-value=0.0016 Score=62.82 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLA 95 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la 95 (226)
-+++|+++.|+|++|+|||||+..++
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 38999999999999999999998754
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.00021 Score=56.00 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++|.++.|.|+||+||||++..++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 679999999999999999999988764
No 253
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.23 E-value=0.0017 Score=55.45 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=38.3
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.|+.++.. +.-.++.+.|..|+||||++.++|...+ ..+.+|+.||+.
T Consensus 6 ~l~~~l~~--~~~~i~~~sgkGGvGKTt~a~~lA~~la------~~g~~vllid~D 53 (334)
T 3iqw_A 6 TLQSILDQ--RSLRWIFVGGKGGVGKTTTSCSLAIQLA------KVRRSVLLLSTD 53 (334)
T ss_dssp SSHHHHHC--TTCCEEEEECSTTSSHHHHHHHHHHHHT------TSSSCEEEEECC
T ss_pred cHHHHhcC--CCeEEEEEeCCCCccHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence 34555543 2346889999999999999999999988 578899999954
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.22 E-value=0.00021 Score=57.37 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.0
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-.++|+++.|.||+|+|||||+..++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999999887764
No 255
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.22 E-value=0.01 Score=53.09 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=45.6
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
....++.||++.+|.++- +-+|+-..|.|++|+|||+++++...+.. ..+..|+|+-
T Consensus 141 ~v~epl~TGikaID~l~P--igrGQR~~Ifg~~g~GKT~l~l~~I~n~~------~~dv~~V~~~ 197 (513)
T 3oaa_A 141 SVDQPVQTGYKAVDSMIP--IGRGQRELIIGDRQTGKTALAIDAIINQR------DSGIKCIYVA 197 (513)
T ss_dssp CCCCBCCCSCHHHHHHSC--CBTTCBCEEEESSSSSHHHHHHHHHHTTS------SSSCEEEEEE
T ss_pred CcCcccccceeeeccccc--cccCCEEEeecCCCCCcchHHHHHHHhhc------cCCceEEEEE
Confidence 346889999999999986 78899999999999999999876655543 3444567765
No 256
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.21 E-value=0.0085 Score=53.63 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=45.2
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
....++.||++.+|-++- +-+|+-..|.|++|+|||++++....+.. +.+..++|+-
T Consensus 141 ~v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~ 197 (502)
T 2qe7_A 141 SVHEPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTTIAIDTIINQK------GQDVICIYVA 197 (502)
T ss_dssp CCCSBCCCSCHHHHHSSC--CBTTCBCEEEECSSSCHHHHHHHHHHGGG------SCSEEEEEEE
T ss_pred CCCCccccceeecccccc--cccCCEEEEECCCCCCchHHHHHHHHHhh------cCCcEEEEEE
Confidence 346789999999999986 88999999999999999999876555554 3344566665
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.21 E-value=0.0052 Score=54.71 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=42.4
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
....+.||++.+|-++- +-+|+-..|.|++|+|||+|+.+++.+.+
T Consensus 133 ~~e~l~TGir~ID~l~p--igkGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp CCCEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCcCCccceEEEecccc--cccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 46789999999999986 88899999999999999999999999975
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.00023 Score=56.31 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++|.++.|+||+|+||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999988765
No 259
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.00025 Score=55.60 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|.++.|.|+||+||||++..++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5788999999999999999999999776
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.18 E-value=0.00021 Score=56.15 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++|.++.|+||+|+|||||+..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999888754
No 261
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.17 E-value=0.0015 Score=55.54 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
++++++|++.+++.|.+.||.+... .++ . .++.++.| .+.-+.+.+
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~--------------------~i~~~~~~---~~~~~lv~a 51 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSK--------IQE---R--------------------ALPLLLHN---PPRNMIAQS 51 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHCS---SCCCEEEEC
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHHcC---CCCeEEEEC
Confidence 5688999999999999999875222 211 1 12333433 346689999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||..+...+...... ...+.+++|+.
T Consensus 52 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 82 (395)
T 3pey_A 52 QSGTGKTAAFSLTMLTRVNP---EDASPQAICLA 82 (395)
T ss_dssp CTTSCHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHHhcc---CCCCccEEEEC
Confidence 99999998777666655421 12456788886
No 262
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.17 E-value=0.00027 Score=59.63 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+++|+++.|+||+|+|||||+.-++.-.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 59999999999999999999999888764
No 263
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.16 E-value=0.0006 Score=60.96 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=42.3
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
....+.||++.+|-++- +-+|.-..|.|++|+|||+|+.+++.+++
T Consensus 145 ~~e~l~TGirvID~l~p--igkGqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 145 KLSIFETGIKVVNLLAP--YRRGGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp CCCCCCCSCTTHHHHSC--CCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred cccccccceeEeeeecc--cccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence 36789999999999986 88999999999999999999999999875
No 264
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00037 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+|.++.|+|+||+||||++..++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999888654
No 265
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.11 E-value=0.0011 Score=51.56 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=44.6
Q ss_pred eEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH------------HHHHHHHHhh-CCCc
Q 036464 76 VTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV------------INYLDKFVSE-HKDV 141 (226)
Q Consensus 76 i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~------------l~~l~~~l~~-~~~~ 141 (226)
++.++ +..|+||||++.++|...+ ..+.+|++||............ -..+.+.+.. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la------~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~y 76 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALS------RSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADY 76 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHH------HCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCC
Confidence 34444 7789999999999999987 4788999999752111110000 0222223322 1258
Q ss_pred eEEEEcCCchh
Q 036464 142 KVVIIDSIAFH 152 (226)
Q Consensus 142 ~lvVIDsl~~l 152 (226)
++||||....+
T Consensus 77 D~viiD~~~~~ 87 (206)
T 4dzz_A 77 DFAIVDGAGSL 87 (206)
T ss_dssp SEEEEECCSSS
T ss_pred CEEEEECCCCC
Confidence 99999998643
No 266
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.10 E-value=0.00037 Score=56.49 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|.++.|.||+|+||||++..++...
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999999887754
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00056 Score=57.06 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=28.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
..+.++.|+|+||+||||++..++.... ...++||.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---------~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---------GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---------TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Confidence 4578999999999999999999987641 24567765
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.09 E-value=0.00036 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++|.++.|.|++||||||++..++...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999888764
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.09 E-value=0.0012 Score=62.19 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEecccc----Cch-HHHHHHHHHHHHHhhCCCceE
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLG----FYT-EQSAVINYLDKFVSEHKDVKV 143 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~----~~~-~~~~~l~~l~~~l~~~~~~~l 143 (226)
..+.-++|+||||+|||+++..++..+.- |.. -.+..++.++.... .+. +....+..+.+.+... +..+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~--~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~i 281 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV--MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSI 281 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG--GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh--hcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeE
Confidence 35667899999999999999999887631 111 02334444442210 111 1111233333333333 4689
Q ss_pred EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464 144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL 190 (226)
Q Consensus 144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq 190 (226)
++||++..+......... . ....+.|+.+..+.++.+|.+..
T Consensus 282 L~IDEi~~l~~~~~~~~~-~----~~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGG-Q----VDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp EEETTTTTTTTSCCSSSC-H----HHHHHHHSSCSSSCCCEEEEEEC
T ss_pred EEEechHHHhhcCCCCcc-h----HHHHHHHHHHHhCCCeEEEEEeC
Confidence 999999987643221100 1 12334555555566677766544
No 270
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00057 Score=52.54 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.3
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
.++.|.|+||+||||++..++.... ..+..+.+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~------~~g~~~~~~~ 36 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD------NQGINNKIIN 36 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEEE
Confidence 3689999999999999999988764 3455677776
No 271
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.07 E-value=0.00017 Score=57.85 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=19.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHH-HHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLA-VNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la-~~~ 98 (226)
+++|.++.|+||+|+||||++..++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6789999999999999999999888 543
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.03 E-value=0.00014 Score=57.90 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+++|+++.|.||+|+|||||+..++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 588999999999999999999888765
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.03 E-value=0.00042 Score=54.49 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=25.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..+|.++.|+|+||+||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5678999999999999999999998765
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.00065 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998865
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00046 Score=52.65 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|+|+||+||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998865
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.02 E-value=0.00035 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
|.++.|.|+||+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999875
No 277
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.01 E-value=0.002 Score=58.57 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcc-ccccCCCCCeEEEEec
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI-PVEFGGLGGKAIYIGK 116 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~l-p~~~~~~~~~vlyi~~ 116 (226)
.|...+..+-....++.|+|++|+|||+|+.+++..... . ......+.|++.
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~v~wv~~ 187 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE---GCFPGGVHWVSV 187 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH---HHCTTCEEEEEE
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH---hhCCCceEEEEC
Confidence 355555432234679999999999999999998754210 0 012346888774
No 278
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.01 E-value=0.0019 Score=50.23 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG 80 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~ 80 (226)
|..++|+|++.+++.|.+.||....+ .++ .+ ++.++.| .-+.+.
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~~--------------------i~~~~~~-----~~~li~ 44 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTP--------IQA---AA--------------------LPLALEG-----KDLIGQ 44 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCH--------HHH---HH--------------------HHHHHTT-----CCEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCH--------HHH---HH--------------------HHHHcCC-----CCEEEE
Confidence 56788999999999999999975332 211 11 1223332 348899
Q ss_pred cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|+|||..+...+..........+.+.+++|+.
T Consensus 45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 99999999876555555442211113456788886
No 279
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.00 E-value=0.00047 Score=54.15 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|.++.|+|++|+||||++..++...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998887653
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.99 E-value=0.00044 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.|.++.|+|+|||||||++..++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999888765
No 281
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.99 E-value=0.00016 Score=67.53 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCCCCC--CCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEE
Q 036464 1 MEVSKLP--ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTE 78 (226)
Q Consensus 1 ~~~~~l~--l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~ 78 (226)
|++++|| |++.+.+.|++.||.....+ + + ..++.++ .|..+.
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~------Q--~-----------------------~~i~~i~-----~~~~~l 44 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPP------Q--A-----------------------EAVEKVF-----SGKNLL 44 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCC------C--H-----------------------HHHHHHT-----TCSCEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHH------H--H-----------------------HHHHHHh-----CCCcEE
Confidence 6788888 88888888888887542211 0 0 1122222 256789
Q ss_pred EecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 79 IGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 79 i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+++|+|+|||+.+...+..... .+.+++|+.
T Consensus 45 v~apTGsGKT~~~~l~il~~~~------~~~~~l~i~ 75 (702)
T 2p6r_A 45 LAMPTAAGKTLLAEMAMVREAI------KGGKSLYVV 75 (702)
T ss_dssp EECSSHHHHHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred EEcCCccHHHHHHHHHHHHHHH------hCCcEEEEe
Confidence 9999999999988766655432 356788887
No 282
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.98 E-value=0.012 Score=52.21 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=41.7
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.....+.||++.+|-++- +-+|+-..|.|++|+|||+|+.+++....
T Consensus 130 ~~~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLNT--LVRGQKLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp CCCCBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CcccccccCceEEecccc--cccCCEEEEeCCCCcChHHHHHHHHHHHH
Confidence 346789999999999986 78899999999999999999999988764
No 283
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.97 E-value=0.00056 Score=57.81 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=32.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+++|.++.|.|++|+|||||+..++.... | ..+ ..++.|+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~-~~G--~~~v~~v~qd 129 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-R-WDH--HPRVDLVTTD 129 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-T-STT--CCCEEEEEGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-c-cCC--CCeEEEEecC
Confidence 68999999999999999999988877653 1 111 1457777643
No 284
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.96 E-value=0.001 Score=58.47 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=50.6
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-C--------chHH--HHHHHH
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-F--------YTEQ--SAVINY 130 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~--------~~~~--~~~l~~ 130 (226)
.|+.++ ..+|.++.|+||+|+||||++..++.... ...+.++++..... . .... ......
T Consensus 158 ~L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l~------~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~ 228 (418)
T 1p9r_A 158 NFRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQELN------SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG 228 (418)
T ss_dssp HHHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHHC------CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred HHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhcC------CCCCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence 355554 37899999999999999999998887764 23456777653321 0 0111 122345
Q ss_pred HHHHHhhCCCceEEEEcCCc
Q 036464 131 LDKFVSEHKDVKVVIIDSIA 150 (226)
Q Consensus 131 l~~~l~~~~~~~lvVIDsl~ 150 (226)
+...+.+ .++++++.++.
T Consensus 229 lr~~Lrq--~pd~i~vgEiR 246 (418)
T 1p9r_A 229 LRAILRQ--DPDVVMVGEIR 246 (418)
T ss_dssp HHHHGGG--CCSEEEESCCC
T ss_pred HHHHhcc--CCCeEEEcCcC
Confidence 5566665 57889888854
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.0011 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+|.++.|.|+|||||||++..++...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.94 E-value=0.00055 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+|.++.|.|+|||||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999998764
No 287
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.93 E-value=0.0022 Score=54.68 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=31.2
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
...+.++.|+|+||+||||++..++.... ..+++|..++.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~------~~~~~v~v~~~ 92 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI------REGLKVAVIAV 92 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEEee
Confidence 46788999999999999999999987764 23556666553
No 288
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.92 E-value=0.0039 Score=51.89 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=31.0
Q ss_pred CeeEEEec-CCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIGG-VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~G-~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
..++.|++ .+|+|||+++.++|..++ ..+.+|+.||..
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA------~~G~rVLLID~D 130 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVIS------QTNKRVLLIDCD 130 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHH------TTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH------hCCCCEEEEecc
Confidence 44555555 589999999999999988 578899999965
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.91 E-value=0.00053 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.1
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|+++.|.||+|+||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999888764
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.88 E-value=0.00049 Score=59.29 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|+||+|+||||++..++..+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998887654
No 291
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.87 E-value=0.00066 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++++|.++.|.||||+|||||+..++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999999999999888654
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.00072 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|+|+||+||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998775
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00066 Score=51.63 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.3
Q ss_pred eeEEEecCCCCChHHHHHHHHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~ 96 (226)
.++.|.|+|||||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 294
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.85 E-value=0.0043 Score=54.92 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCC-eEEEEec
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG-KAIYIGK 116 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~-~vlyi~~ 116 (226)
.+.|.|+||+|||+++..++..+. ..+. +++.+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~------~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI------STGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH------HTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH------hcCCceEEEecC
Confidence 899999999999999999988875 2333 5666653
No 295
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00093 Score=51.60 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.+++.++.|+|+|||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999999887
No 296
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.0076 Score=48.22 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=27.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
..|+.+.+.|++|+|||++....+........ ...+.++++..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-~~~~~~~l~~~ 116 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND-RAAECNIVVTQ 116 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-CGGGCEEEEEE
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-CCCceEEEEec
Confidence 34789999999999999877666554332100 01123677765
No 297
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=96.83 E-value=0.0011 Score=46.24 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ 47 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~ 47 (226)
+||++|.|+.+..+.|+++||+|+.|++..+..+|.+ +.++.-++.+
T Consensus 24 ~~Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 74 (98)
T 1coo_A 24 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 74 (98)
T ss_dssp SBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999988 3344444433
No 298
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.81 E-value=0.0022 Score=55.52 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.1
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
.++.+.|..|+||||++.++|...+ ..+.+|+.||+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la------~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLA------SQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHH------HTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH------HCCCCeEEEeC
Confidence 4778999999999999999999987 47889999996
No 299
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.0016 Score=54.76 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhcc-ccccCCCCCeEEEEec
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI-PVEFGGLGGKAIYIGK 116 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l-p~~~~~~~~~vlyi~~ 116 (226)
..+|.++.|+|++|+|||||+..++..... | ..+.+.+++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----~~G~i~vi~~ 118 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP-----EHRRVELITT 118 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-----TCCCEEEEEG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEec
Confidence 378899999999999999999888775420 1 2345666654
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.80 E-value=0.00089 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+|.++.|+||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999999998764
No 301
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.79 E-value=0.0023 Score=58.15 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=41.5
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.....+.||++.+|-++- +-+|.-..|.|++|+|||+++.+++.+.
T Consensus 211 ~~~epl~TGirvID~l~P--igrGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFP--VTKGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp CCCSBCCCCCHHHHHHSC--CBTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCceecccchhhhccCC--ccCCCEEeeecCCCccHHHHHHHHHhcc
Confidence 346889999999999986 8899999999999999999999998874
No 302
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.79 E-value=0.0011 Score=52.31 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=32.3
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+++|.++.|.|++|+||||++..++..... ..+.++++++.+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR-----DRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHH-----HHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----ccCCcEEEECCh
Confidence 578999999999999999999998876520 123457888743
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00097 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.4
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988765
No 304
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.77 E-value=0.0011 Score=53.03 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=27.3
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.-++...++.|.|||||||+|.|..++..+-
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4567888999999999999999999998874
No 305
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.76 E-value=0.001 Score=51.06 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=22.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|+|+|||||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998875
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.76 E-value=0.0011 Score=51.28 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.++.|.|+|||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.76 E-value=0.0011 Score=50.84 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..+.++.|+|+||+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998775
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.73 E-value=0.0017 Score=53.68 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCccHHHHHhCChhHHhh---------chHhHHHHHHHhh----------cccCceecC-----------
Q 036464 10 ATQRGKLISAGYTSLSSICSASSSDISR---------GTQTAWDMLQEEQ----------ESLARITTS----------- 59 (226)
Q Consensus 10 ~~~~~~l~~~g~~t~~~~~~~~~~~l~~---------~~~~a~~l~~~~~----------~~~~~i~Tg----------- 59 (226)
..+++-+.++|+.+-.++..+++..-.. ..+.++++..... ........|
T Consensus 2 ~~mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m~r~~~~~~~s~~~~i~~~~~~~~~~~n~i~~~l~~ 81 (267)
T 1u0j_A 2 MELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILEL 81 (267)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHCCHHHHHSCSSCCSCGGGCHHHHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHHHHHHHHccCCHHHHhcccCCCCCCchHHHHHHHHH
Confidence 4678889999999999988655542221 2233443322210 000111111
Q ss_pred --------chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 60 --------CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 60 --------~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..-|...+.|..++..-+.|+||||+|||.|+..++..+
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 011333445554767789999999999999999998875
No 309
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.73 E-value=0.006 Score=48.92 Aligned_cols=78 Identities=14% Similarity=0.001 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
.+++++|++.+.+.|.+.||..... .++ .| ++.++. |.-+.+.+
T Consensus 30 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----g~~~l~~a 73 (242)
T 3fe2_A 30 NFYEANFPANVMDVIARQNFTEPTA--------IQA---QG--------------------WPVALS-----GLDMVGVA 73 (242)
T ss_dssp STTTTTCCHHHHHHHHTTTCCSCCH--------HHH---HH--------------------HHHHHH-----TCCEEEEE
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHhC-----CCCEEEEC
Confidence 4567889999999999998865322 211 11 122332 24578899
Q ss_pred CCCCChHHHHHHHHHHhcccc--ccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPV--EFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~--~~~~~~~~vlyi~ 115 (226)
|+|+|||....-.+....... .....+..++|+.
T Consensus 74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~ 109 (242)
T 3fe2_A 74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA 109 (242)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC
T ss_pred CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe
Confidence 999999977544433332110 0112356788887
No 310
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.00095 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.++.|.|+||+||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998554
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.0007 Score=55.85 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++ |+++.|.||+|+|||||+..++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 78 9999999999999999998776554
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.71 E-value=0.0011 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.4
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..++.|+|++|+||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998775
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.70 E-value=0.0011 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.6
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.|+|+|||||||++..++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998775
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.70 E-value=0.0013 Score=52.25 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
++.|.|||||||+|.|..++..+- +.+|++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----------~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----------FVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----------CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----------CeEEcH
Confidence 578999999999999999998874 567874
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.00089 Score=50.32 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=18.4
Q ss_pred eeEEEecCCCCChHHHHHHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQL 94 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~l 94 (226)
.++.|+|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999988
No 316
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.68 E-value=0.0015 Score=51.07 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
...|.++.|+|++||||||++..++...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999998765
No 317
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.66 E-value=0.0013 Score=51.49 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.+|.++.|+|++||||||++..++....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999987653
No 318
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.66 E-value=0.0021 Score=57.27 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEeccccCchHHH-HHHHHHHHHHhhCCCceEEEEc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLGFYTEQS-AVINYLDKFVSEHKDVKVVIID 147 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~~~~~~~-~~l~~l~~~l~~~~~~~lvVID 147 (226)
...-++|+||||+|||+++..++..+.- |.. -.+.++++++... .+.... ..+..+-..+... +..+++||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~~-~~~g~~e~~~~~~~~~~~~~-~~~iLfiD 274 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI--LRDKRVMTLDMGT-KYRGEFEDRLKKVMDEIRQA-GNIILFID 274 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT--TSSCCEECC-----------CTTHHHHHHHHHTC-CCCEEEEC
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh--hcCCeEEEeeCCc-cccchHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 3445689999999999999999988741 111 1244566665330 111110 1122222333333 56799999
No 319
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.65 E-value=0.0033 Score=41.07 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464 5 KLPISATQRGKLISAGYTSLSSICSASSSDISR 37 (226)
Q Consensus 5 ~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~ 37 (226)
.|++++.+.++|.++||+|++++..+++.+|..
T Consensus 11 ~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~ 43 (70)
T 1u9l_A 11 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLE 43 (70)
T ss_dssp HHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTT
T ss_pred hCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhh
Confidence 367999999999999999999999999999988
No 320
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.65 E-value=0.0026 Score=51.16 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=26.6
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
...+|.++.|.|+||+||||++..++....
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999988764
No 321
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.64 E-value=0.0012 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
++|.++.|.|++||||||++..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999854
No 322
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.63 E-value=0.011 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
...++.++|.||+||||++..++...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998775
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.63 E-value=0.0014 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+|.++.|.|+|||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998875
No 324
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0012 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.5
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|+++.|.|++|+||||++..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6789999999999999999888765
No 325
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.63 E-value=0.0023 Score=57.95 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=41.4
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.....+.||++.+|.++- +-+|+-..|.|++|+|||+++.+++.+.
T Consensus 200 ~~~epl~TGirvID~l~P--igrGqr~~Ifg~~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLFP--VAMGGTAAIPGPFGSGKSVTQQSLAKWS 245 (578)
T ss_dssp CSCSEECCSCHHHHTTSC--EETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred cCCCcccccchhhhhccc--ccCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence 456889999999999986 7889999999999999999999998874
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.63 E-value=0.0012 Score=52.58 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..++.++.|.|+|||||||++..++...
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4556789999999999999999998765
No 327
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00098 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.6
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.++.|+|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 328
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.62 E-value=0.0017 Score=58.75 Aligned_cols=46 Identities=24% Similarity=0.154 Sum_probs=41.0
Q ss_pred cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.....+.||++.+|.++- +-+|+-..|.|++|+|||+++.+++.+.
T Consensus 206 ~~~epl~TGirvID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~ 251 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFFP--QAKGGTAAIPGPAGSGKTVTQHQLAKWS 251 (588)
T ss_dssp CSCSEECCSCHHHHHHSC--EETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred cCCcccccCcchhhccCC--cccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence 346789999999999986 7889999999999999999999998763
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.62 E-value=0.0016 Score=50.83 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..+.++.|+|+||+||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999998865
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.58 E-value=0.0015 Score=50.77 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+|.++.|.|++||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999988764
No 331
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.0012 Score=53.77 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
...+.++.|+|+|||||||++..++.... ..+++++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---------~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---------GNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---------TCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---------CCcEEEecH
Confidence 35678999999999999999999987652 245677754
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.57 E-value=0.0021 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|+|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998865
No 333
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.56 E-value=0.0016 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.++.|+|+|||||||++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998875
No 334
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.55 E-value=0.0068 Score=62.01 Aligned_cols=36 Identities=6% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464 1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR 37 (226)
Q Consensus 1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~ 37 (226)
.||.+++ +++..+.+|.++|+ |.+++...++.+|..
T Consensus 726 ~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~ 762 (1724)
T 4f92_B 726 CPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGE 762 (1724)
T ss_dssp CGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHH
T ss_pred CceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHH
Confidence 3788898 99999999999999 899999999987764
No 335
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.55 E-value=0.0053 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG 80 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~ 80 (226)
|+.++++|++.+.+.|++.||.+..+ .++ .| ++.++.| +.-+.+.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~~----~~~~l~~ 50 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTD--------IQM---KV--------------------IPLFLND----EYNIVAQ 50 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCH--------HHH---HH--------------------HHHHHHT----CSEEEEE
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCH--------HHH---HH--------------------HHHHhCC----CCCEEEE
Confidence 46778999999999999999875322 211 11 1223322 2467899
Q ss_pred cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|+|||..+...+...... ..+.+++++.
T Consensus 51 ~~TGsGKT~~~~~~~~~~~~~----~~~~~~lil~ 81 (367)
T 1hv8_A 51 ARTGSGKTASFAIPLIELVNE----NNGIEAIILT 81 (367)
T ss_dssp CCSSSSHHHHHHHHHHHHSCS----SSSCCEEEEC
T ss_pred CCCCChHHHHHHHHHHHHhcc----cCCCcEEEEc
Confidence 999999999887776665521 2456788887
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.53 E-value=0.0023 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.9
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.++.|+|++|+||||++..++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999987753
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.52 E-value=0.002 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|.|++||||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 338
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.50 E-value=0.0016 Score=57.92 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
....+.||++.+|-++- +-+|+-..|.|++|+|||+|+.++|.+..
T Consensus 132 ~~e~l~TGir~ID~l~p--igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNT--LVRGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CCSBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred cccccceeeEeeeeeec--cccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999986 78899999999999999999999999875
No 339
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.50 E-value=0.0019 Score=49.35 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+| ++.|+|++|+|||+++..++...
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 5566 99999999999999998776543
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.50 E-value=0.0027 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..-.++.|+|++|+||||++..++....
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3456899999999999999999887653
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.48 E-value=0.0017 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.5
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.|+|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998875
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.48 E-value=0.0026 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998876
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.46 E-value=0.0018 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|.|+|||||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998875
No 344
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.46 E-value=0.0032 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++.+.|..|+||||++.++|...+ ..+.+|+.||..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la------~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLH------AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHH------HCCCcEEEEcCC
Confidence 566689999999999999999987 578899999965
No 345
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.002 Score=51.09 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+|..+.|.|+|||||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998876
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.44 E-value=0.0024 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
...++.|+|++||||||++..++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998764
No 347
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0024 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.++.|.|+|||||||++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 348
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.42 E-value=0.0015 Score=58.96 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cCc---------------hHHHHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GFY---------------TEQSAVINYLDKF 134 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~~---------------~~~~~~l~~l~~~ 134 (226)
++.|.++.|+||+||||||++..++..+. ...+++.|.... ... .......+.+...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~-------~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~ 329 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIP-------PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA 329 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSC-------TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCC-------CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh
Confidence 36788999999999999999987765542 344566665321 000 0001122334444
Q ss_pred HhhCCCceEEEEcCCc
Q 036464 135 VSEHKDVKVVIIDSIA 150 (226)
Q Consensus 135 l~~~~~~~lvVIDsl~ 150 (226)
+.+ +|+.++++++.
T Consensus 330 LR~--~PD~iivgEir 343 (511)
T 2oap_1 330 LRQ--RPDYIIVGEVR 343 (511)
T ss_dssp GGG--CCSEEEESCCC
T ss_pred hcc--CCCeEEeCCcC
Confidence 543 68999999987
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.41 E-value=0.0021 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.++.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998876
No 350
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.40 E-value=0.0041 Score=51.92 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-.++.++.|+|++|+|||||+..++....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45788999999999999999988877664
No 351
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.39 E-value=0.0054 Score=49.56 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.+..++.+.|.+|+||||++.+++...+ .+.+|+.++.+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-------~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-------DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-------TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-------CCCeEEEEeCC
Confidence 4567899999999999999999998764 46788888855
No 352
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.39 E-value=0.0041 Score=53.23 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
...++.|+|+||+||||++.+++.... ..+.+|..++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~------~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI------ERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH------hCCCceEEEecC
Confidence 346899999999999999999998876 467788887754
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.39 E-value=0.0025 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..++.|+|+|||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.37 E-value=0.0024 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999998875
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.36 E-value=0.0016 Score=52.21 Aligned_cols=28 Identities=21% Similarity=-0.014 Sum_probs=23.9
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
..++|.++.|.|++|+||||++..++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999776543
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.35 E-value=0.0025 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|+|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 357
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.33 E-value=0.0028 Score=50.61 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.+.|..|+||||++.++|...+ ..+.+|+.||..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D 37 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA------SDYDKIYAVDGD 37 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT------TTCSCEEEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence 44589999999999999999998 578999999964
No 358
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.30 E-value=0.038 Score=40.52 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+.|++|+|||+|+..++..-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36889999999999999988654
No 359
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.30 E-value=0.0037 Score=52.79 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=35.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+..-+++.|+|.-|+||||.+.+++...+ ..|.+|+.||..
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA------~~GkkVllID~D 85 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS------ILGKRVLQIGCD 85 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEES
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHH------HCCCeEEEEecC
Confidence 55678999999999999999999999988 588999999955
No 360
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.30 E-value=0.0031 Score=58.31 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=30.5
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
...+.+|.||||||||+.+.+++.... ..+.+|+...
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~------~~~~~ILv~a 240 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAV------KQGLKVLCCA 240 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEc
Confidence 456899999999999999988887776 3567788777
No 361
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.29 E-value=0.0025 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.|..++|.||+|+|||+++..++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.5
Q ss_pred eeEEEecCCCCChHHHHHHHHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~ 96 (226)
.++.|+|++||||||++..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988875
No 363
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.29 E-value=0.016 Score=46.55 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.2
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
..++||+|+|||.++..++... +.+++|+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---------STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---------CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEe
Confidence 8899999999999998777653 35677776
No 364
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.29 E-value=0.013 Score=45.43 Aligned_cols=76 Identities=13% Similarity=0.012 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464 1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG 80 (226)
Q Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~ 80 (226)
+..++++|++.+++.|.+.||.+..+ .++ .| ++.++. |.-+.+.
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----~~~~lv~ 46 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSP--------IQE---ES--------------------IPIALS-----GRDILAR 46 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCH--------HHH---HH--------------------HHHHHT-----TCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHcc-----CCCEEEE
Confidence 45678999999999999999875322 211 11 122332 2348899
Q ss_pred cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|+|||....-.+...... ...+.+++|+.
T Consensus 47 apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 78 (206)
T 1vec_A 47 AKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIV 78 (206)
T ss_dssp CCSSSTTHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCCCchHHHHHHHHHHHhcc---cCCCeeEEEEe
Confidence 999999997655444443311 12345688876
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.28 E-value=0.0026 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.|+|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.28 E-value=0.0027 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|+|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 367
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.26 E-value=0.0025 Score=58.22 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=40.5
Q ss_pred hhHHHhhCC-CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 61 ADLDNILGG-GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 61 ~~LD~~l~G-Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.||.++++ +-....++.+.|.+|+|||+++.++|...+ ..+.+|+++|..
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~------~~g~~vllvD~D 364 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA------DMGFDVHLTTSD 364 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHH------HCCCcEEEEeCC
Confidence 566776653 234566888899999999999999999987 468899999854
No 368
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.25 E-value=0.0039 Score=56.97 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
...++.+.|.+|+||||++.++|...+ ..|.+|++||+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA------~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLA------EQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHH------HCCCcEEEEECC
Confidence 457899999999999999999999988 478899999965
No 369
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.24 E-value=0.0047 Score=50.94 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCeeEEEecC-CCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGV-PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~-~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
...++.|+++ +|+|||+++.++|..++ ..+.+|+.||..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA------~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYA------QAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHH------hCCCeEEEEeCC
Confidence 4567777765 89999999999999988 478899999965
No 370
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.23 E-value=0.0094 Score=58.27 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=35.8
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
..|...|..+=....++.|+|++|+|||+||.+++..... ........++|++..
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~--~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSL--LEGCFSGGVHWVSIG 188 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHH--HTTTSTTCEEEEECC
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhH--HHhhCCCeEEEEEEC
Confidence 3455555322244578999999999999999988765310 011245678898843
No 371
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.23 E-value=0.0033 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-.++.|.|.+||||||++..++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 372
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.19 E-value=0.0041 Score=51.36 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.8
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++.|+|..|+||||++.++|...+ ..+.+|+.||..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La------~~G~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA------EMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH------HCCCeEEEEecC
Confidence 3566689999999999999999987 468899999965
No 373
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.19 E-value=0.003 Score=57.50 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+++|.++.|+|++||||||++..++.... | ..++.+.|++..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~-~----~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM-E----MGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH-T----TCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc-c----cCCceEEEECCc
Confidence 56899999999999999999999888764 1 122356678764
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0023 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCC---CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGC---REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~---G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+ |.++.|+|++|+||||++..++...
T Consensus 42 i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 566 8999999999999999999998865
No 375
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.19 E-value=0.0065 Score=52.09 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=38.5
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc--cccccCCCCCeEEEEecc
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ--IPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~--lp~~~~~~~~~vlyi~~e 117 (226)
+.|+.++.. +...++...|.+|+||||++.++|...+ . .|.+|+.||+.
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~------~G~rVLLvD~D 57 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ------PNKQFLLISTD 57 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECC
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECC
Confidence 346667753 3356888889999999999999998876 3 67899999954
No 376
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.003 Score=49.19 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEecCCCCChHHHHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~ 96 (226)
++.|+|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999998886
No 377
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.17 E-value=0.005 Score=51.54 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=32.9
Q ss_pred CCeeEEEecC-CCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGV-PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~-~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.+.++.|+++ +|+|||+++.++|..++ ..+.+|+.||..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA------~~G~rVLLID~D 142 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIA------QSDQKVLFIDAD 142 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHH------hCCCcEEEEECC
Confidence 4567777775 89999999999999987 468899999965
No 378
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.16 E-value=0.0032 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++|+||+|+|||||+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357899999999999999988764
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.16 E-value=0.0067 Score=48.25 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=29.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
-+|.++.|.|++|+||||++..++.... ..+.+|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~------~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR------ERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH------HcCCCccccc
Confidence 3588999999999999999999987764 3455665443
No 380
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.15 E-value=0.0031 Score=52.84 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHH
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la 95 (226)
.+|.++. +..|.++.|.|+||+|||||+..++
T Consensus 155 gi~~L~~--~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVD--YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHH--HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHh--hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3555553 4568999999999999999999888
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.14 E-value=0.0014 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
++.|.|++||||||++..++....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987763
No 382
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.12 E-value=0.0031 Score=55.55 Aligned_cols=29 Identities=21% Similarity=0.109 Sum_probs=24.6
Q ss_pred CCCCCee--EEEecCCCCChHHHHHHHHHHh
Q 036464 70 GIGCREV--TEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 70 Gi~~G~i--~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+++|.+ +.|+|++|+|||||+..++...
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3889999 9999999999999998887653
No 383
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.12 E-value=0.0043 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+..+.|.|+|||||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998876
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.11 E-value=0.0068 Score=51.36 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=28.4
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
-++.|.|++||||||++..++.....- ..+++|.+++..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~----~~~~~v~~i~~D 131 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRW----PDHPNVEVITTD 131 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTS----TTCCCEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc----CCCCeEEEEeec
Confidence 489999999999999998887665310 123567777754
No 385
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.11 E-value=0.0036 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+|..+.|+||||+|||+++..++...-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999999988763
No 386
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.10 E-value=0.013 Score=50.16 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~ 82 (226)
++.+++++...+.|.+.||..... .++ ..++.++. |.-+.+.+|
T Consensus 42 f~~~~l~~~~~~~l~~~~~~~~~~--------~Q~-----------------------~~i~~~~~-----~~~~lv~a~ 85 (414)
T 3eiq_A 42 FDDMNLSESLLRGIYAYGFEKPSA--------IQQ-----------------------RAILPCIK-----GYDVIAQAQ 85 (414)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCH--------HHH-----------------------HHHHHHHT-----TCCEEECCC
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCH--------HHH-----------------------HHhHHHhC-----CCCEEEECC
Confidence 345677888888888877765222 111 12233343 234799999
Q ss_pred CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|||..+...+...... ...+.+++|+.
T Consensus 86 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 115 (414)
T 3eiq_A 86 SGTGKTATFAISILQQIEL---DLKATQALVLA 115 (414)
T ss_dssp SCSSSHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCcccHHHHHHHHHHHhh---cCCceeEEEEe
Confidence 9999998876666655421 12456788887
No 387
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.10 E-value=0.0074 Score=51.13 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
...+..+.|.+|+||||++..+|...+ ..|.+|+.+|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA------~~G~rVllvD~D 56 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMS------KVRSSVLLISTD 56 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHH------TSSSCEEEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHH------HCCCeEEEEECC
Confidence 356788899999999999999999988 578899999854
No 388
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.09 E-value=0.0047 Score=53.18 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|++.|...+ +|+++.|.|+||+|||||+..++...
T Consensus 205 gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 205 GLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp THHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhccc
Confidence 556666554 57899999999999999998777543
No 389
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.08 E-value=0.0067 Score=52.42 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
..+.-+.|+|++|+|||+++..++.... ..+.+++++|
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~------~~~~~~~~~D 70 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREY------MQGSRVIIID 70 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHH------HCCCEEEEEe
Confidence 3566789999999999999999887765 3556777777
No 390
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.07 E-value=0.0082 Score=47.87 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.2
Q ss_pred CeeEEEe-cCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEecc
Q 036464 74 REVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e 117 (226)
+.++.++ +..|+||||++.++|...+ .. +.+|++||..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la------~~~g~~VlliD~D 43 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALS------QEPDIHVLAVDIS 43 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHT------TSTTCCEEEEECC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHH------hCcCCCEEEEECC
Confidence 4555555 5689999999999999988 46 8999999965
No 391
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.07 E-value=0.0033 Score=53.65 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.9
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++.++.|+||+|+|||+|+..+|...
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 456799999999999999999999765
No 392
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0044 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0047 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred CeeEEEecCCCCChHHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
..++.|+|++||||||++..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999988764
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.01 E-value=0.0038 Score=53.58 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=27.7
Q ss_pred hCCCCCC--CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 67 LGGGIGC--REVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 67 l~GGi~~--G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.--+++ |+.+.|.|++|+|||||+..++....
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345667 99999999999999999999887754
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.00 E-value=0.0046 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.-++.|.||||+||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998775
No 396
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.00 E-value=0.0092 Score=51.10 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=38.4
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.|+.++.. +.-.++.+.|..|+||||++.++|..++.. ..+.+|+.||+.
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~----~~g~~vllid~D 57 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALA----QPNEQFLLISTD 57 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHH----CTTSCEEEEECC
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHh----cCCCeEEEEECC
Confidence 45666753 334799999999999999999999887610 267899999853
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.00 E-value=0.003 Score=52.73 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
++-++.|+|++||||||++..++...- ..+.++.+|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg------~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR------REGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH------HHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh------hcCCCeeEeecc
Confidence 355899999999999999999887542 122346666644
No 398
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.042 Score=41.62 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+.+.|++|+|||+|+..++....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478899999999999999987643
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.95 E-value=0.005 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 400
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.04 Score=41.31 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+.|++|+|||+|+..++..-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999988654
No 401
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.94 E-value=0.022 Score=48.61 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
++++++|++.+++.|.+.||..... .++ . .++.++.| .+.-+.+.+
T Consensus 26 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~---~~~~~lv~a 71 (412)
T 3fht_A 26 SFEELRLKPQLLQGVYAMGFNRPSK--------IQE---N--------------------ALPLMLAE---PPQNLIAQS 71 (412)
T ss_dssp CTGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHSS---SCCCEEEEC
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHhcC---CCCeEEEEC
Confidence 4567789999999999999865322 111 1 12333433 356789999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||..+...+...... ...+.+++|+.
T Consensus 72 pTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 102 (412)
T 3fht_A 72 QSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLS 102 (412)
T ss_dssp CTTSCHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCchHHHHHHHHHHHHhhh---cCCCCCEEEEC
Confidence 99999998765555544421 12344788886
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.93 E-value=0.0075 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.+.++.|+|+||+|||||...++...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.93 E-value=0.0054 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCeeEEEecCCCCChHHHHHHHHH
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
.+.++.|+|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998875
No 404
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0062 Score=48.80 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++|.++.|+|++|+||||++..++...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999999888654
No 405
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.90 E-value=0.0074 Score=48.86 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=30.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+....+..|+|||+++.++|...+ ..+.+|++||..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D 40 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALA------QLGHDVTIVDAD 40 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence 445577899999999999999987 467899999965
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.90 E-value=0.0054 Score=49.71 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=29.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
-.++.|+|++||||||++..++...-.+.-. ..+.+++++++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D 64 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQD 64 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecC
Confidence 3589999999999999999998865322100 123456777754
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.88 E-value=0.023 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.|.|++|+|||+|+..++..-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 408
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.85 E-value=0.0074 Score=47.94 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+....+..|+|||+++.++|...+ ..+.+|++||..
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D 40 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALG------DRGRKVLAVDGD 40 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH------hcCCeEEEEeCC
Confidence 344456789999999999999987 467899999964
No 409
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.84 E-value=0.0071 Score=52.09 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCeeEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 72 GCREVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 72 ~~G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
..+.++.++ |..|+||||++.++|...+ ..+.+|++||.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La------~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA------NMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH------HHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH------hCCCCEEEEECC
Confidence 345666666 5899999999999999987 467899999965
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.84 E-value=0.0058 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998765
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.83 E-value=0.0096 Score=56.00 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.5
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+...-++|+||||+|||+++..++..+.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3444589999999999999999998863
No 412
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.82 E-value=0.0062 Score=47.98 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEe-ccccC---------------c-hHHHHHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIG-KCLGF---------------Y-TEQSAVINYLDKFV 135 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~-~e~~~---------------~-~~~~~~l~~l~~~l 135 (226)
..+++++|+||+|||++|...+...+ +.+. ..+.+.+|+. ..... . .+.. ..+.+.++.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~--~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~ 81 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPD--ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQL-SAHDMYEWI 81 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCC--TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCE-EGGGHHHHT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhccc--ccCceEEEEecCCCccccccccchhhhhccccCcccc-cHHHHHHHh
Confidence 45899999999999999988765542 1110 1231445433 22100 0 0000 012233332
Q ss_pred --hhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464 136 --SEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196 (226)
Q Consensus 136 --~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~ 196 (226)
.+ .+..+||||+.+.++....... +. .+++..|.. -++.+..+|++.|....++
T Consensus 82 ~~~~-~~~~vliIDEAq~l~~~~~~~~-e~----~rll~~l~~-~r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 82 KKPE-NIGSIVIVDEAQDVWPARSAGS-KI----PENVQWLNT-HRHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp TSGG-GTTCEEEETTGGGTSBCCCTTC-CC----CHHHHGGGG-TTTTTCEEEEEESCGGGBC
T ss_pred hccc-cCceEEEEEChhhhccCccccc-hh----HHHHHHHHh-cCcCCeEEEEECCCHHHHh
Confidence 22 2468999999998764321110 00 022333332 2356777777777754443
No 413
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.067 Score=40.69 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEecCCCCChHHHHHHHHHHhc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.|.|++|+|||+|+..++..-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.77 E-value=0.0062 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=22.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.|+||+|||||+++..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999875
No 415
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.76 E-value=0.0029 Score=49.24 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=26.9
Q ss_pred hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHH
Q 036464 61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
..++. +. +++|..+.|.|++|+|||||...++.
T Consensus 16 ~~l~~-~~--~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-LP--SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-SS--CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-CC--CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45555 43 78899999999999999999987764
No 416
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.75 E-value=0.0083 Score=48.81 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=30.1
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.+....+..|+||||++.++|...+ ..+.+|++||..
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la------~~G~~VlliD~D 56 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYA------RQGKKVGILDAD 56 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence 3445567889999999999999987 467899999954
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.75 E-value=0.007 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
++.|+|++||||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998764
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.74 E-value=0.0064 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.9
Q ss_pred eeEEEecCCCCChHHHHHHHHHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.++.|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.73 E-value=0.051 Score=40.41 Aligned_cols=24 Identities=29% Similarity=0.146 Sum_probs=20.7
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+.+.|++|+|||+|+..++..-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999986643
No 420
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.71 E-value=0.0066 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.0
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.++.|+||+|+|||+++..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999875
No 421
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.71 E-value=0.012 Score=46.27 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=43.8
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHH------------HHHHHHhhCCCceE
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN------------YLDKFVSEHKDVKV 143 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~------------~l~~~l~~~~~~~l 143 (226)
+....+..|+||||++.++|...+ ..+ +|+.||......... .+. .+..+ . ..+++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la------~~g-~VlliD~D~q~~~~~--~~~~~~l~~~vi~~~~l~~l-~--~~yD~ 70 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLA------LQG-ETLLIDGDPNRSATG--WGKRGSLPFKVVDERQAAKY-A--PKYQN 70 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH------TTS-CEEEEEECTTCHHHH--HHHHSCCSSEEEEGGGHHHH-G--GGCSE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHH------hcC-CEEEEECCCCCCHHH--HhcCCCCCcceeCHHHHHHh-h--hcCCE
Confidence 445568899999999999999987 467 999999763221111 111 12222 2 25899
Q ss_pred EEEcCCch
Q 036464 144 VIIDSIAF 151 (226)
Q Consensus 144 vVIDsl~~ 151 (226)
||||....
T Consensus 71 viiD~p~~ 78 (209)
T 3cwq_A 71 IVIDTQAR 78 (209)
T ss_dssp EEEEEECC
T ss_pred EEEeCCCC
Confidence 99998775
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0071 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.3
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|+||+|+|||+++..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998765
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.69 E-value=0.05 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+.|++|+|||+|+..++..-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987654
No 424
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.69 E-value=0.0081 Score=49.66 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=31.5
Q ss_pred CeeEEEec---CCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIGG---VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~G---~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.++.|++ ..|+||||++.++|...+ ..+.+|+.||..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la------~~G~rVlliD~D 74 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTD------KLNLKVLMIDKD 74 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH------HTTCCEEEEEEC
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHH------hCCCeEEEEeCC
Confidence 45666665 899999999999999887 468899999954
No 425
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.67 E-value=0.049 Score=53.21 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
...++.|+|++|+|||+||.+++.....-. ..+.+++|++.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~---~Fd~gV~WVsV 189 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQC---KMDFKIFWLNL 189 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHH---HHSSCEEEEEC
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHH---hCCCcEEEEEe
Confidence 357999999999999999999986421100 12346888874
No 426
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.67 E-value=0.0095 Score=47.96 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=30.3
Q ss_pred eeEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 75 EVTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 75 ~i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.++.+ .+..|+||||++.++|...+ ..+.+|+.||..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D 40 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLA------QKGKKTVVIDFA 40 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence 34444 66789999999999999987 468899999965
No 427
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.66 E-value=0.0042 Score=51.99 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=27.3
Q ss_pred hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+|.++. +..|.++.|.|+||+|||||+..++...
T Consensus 159 gv~~lf~--~l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 159 GIEELKE--YLKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp THHHHHH--HHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CHHHHHH--HhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 3555553 4568999999999999999998776543
No 428
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.66 E-value=0.0045 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|.-+.|+||||+|||+++..++...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999999999998765
No 429
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.65 E-value=0.042 Score=41.36 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.+.|++|+|||+|+..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998654
No 430
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.65 E-value=0.0016 Score=54.91 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+|.++. +.+|+++.|.|+||+|||||+..++..
T Consensus 164 ~~~L~~--~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 164 LADIIP--HFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp CTTTGG--GGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 344443 567899999999999999999877644
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.63 E-value=0.0089 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..++.|+||+|+|||+|+..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 432
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.63 E-value=0.0073 Score=48.98 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=31.4
Q ss_pred CeeEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.++.++ +..|+||||++.++|...+ ..+.+|++||..
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D 44 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLA------RLGKRVLLVDLD 44 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHH------HCCCCEEEEECC
Confidence 4566665 6789999999999999987 468899999955
No 433
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.59 E-value=0.0066 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhccc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIP 101 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp 101 (226)
+.|+|++|+|||||+..++.. ..|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl-~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV-ALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC-C--
T ss_pred EEEECCCCChHHHHHHHHhCC-CCC
Confidence 899999999999999887764 334
No 434
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.59 E-value=0.043 Score=42.94 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
.+++++|++.+++.|.+.||..... .++ . .++.++.| .-+.+.+
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~-----~~~li~~ 58 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSE--------VQH---E--------------------CIPQAILG-----MDVLCQA 58 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCH--------HHH---H--------------------HHHHHHTT-----CCEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhCC-----CCEEEEC
Confidence 4678889999999999999875222 211 1 12223332 3378999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||..+...+.....+ ...+.+++|+.
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 89 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEP---VTGQVSVLVMC 89 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCC---CTTCCCEEEEC
T ss_pred CCCCchhhhhhHHHHHhhhc---cCCCEEEEEEe
Confidence 99999998776666655421 11234788886
No 435
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.58 E-value=0.0092 Score=54.75 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+..|..+.|.||||+|||+++..++....
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567999999999999999999988653
No 436
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.57 E-value=0.043 Score=48.05 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCeeEEEecCCCCChHHHH-HHHHHHhccccccCCCCCeEEEEe
Q 036464 73 CREVTEIGGVPGIGKTQLG-IQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~-~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+.++++||+|+|||..+ ..++..+. ..+.+++|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~------~~g~~~lvl~ 38 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV------KKRLRTVILA 38 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH------HTTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH------hCCCCEEEEC
Confidence 3678999999999999986 44443433 2455788876
No 437
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.57 E-value=0.022 Score=44.72 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
.+++++|++.+++.|++.||.... +.++ .|+ +.++.| .-+.+.+
T Consensus 5 ~f~~~~l~~~l~~~l~~~g~~~~~--------~~Q~---~~i--------------------~~~~~~-----~~~lv~a 48 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKTLRFYKPT--------EIQE---RII--------------------PGALRG-----ESMVGQS 48 (219)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCC--------HHHH---HHH--------------------HHHHHT-----CCEEEEC
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCC--------HHHH---HHH--------------------HHHhCC-----CCEEEEC
Confidence 456788999999999999987532 2211 111 222222 3468999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||......+...... ...+.+++|+.
T Consensus 49 ~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~ 79 (219)
T 1q0u_A 49 QTGTGKTHAYLLPIMEKIKP---ERAEVQAVITA 79 (219)
T ss_dssp CSSHHHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCChHHHHHHHHHHHHHHh---CcCCceEEEEc
Confidence 99999998755555444321 12345788887
No 438
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.57 E-value=0.027 Score=42.85 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-+.|.|++|+|||+|+..++..-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999886543
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.54 E-value=0.0093 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHH
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.-.++.|+|.+||||||++..++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468899999999999999998876
No 440
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.52 E-value=0.0079 Score=48.40 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-..+|.++.|.|++|+||||++..++....
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999887763
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.50 E-value=0.012 Score=47.53 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.-.+|.++.|.|++|+||||++..++....
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445688999999999999999999887764
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.50 E-value=0.009 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
..++.|+|++||||||++..++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999883
No 443
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.49 E-value=0.005 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.9
Q ss_pred EEEecCCCCChHHHHHHHHHHhc
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+.|+||||+|||+++..++....
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999988653
No 444
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.48 E-value=0.01 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred CeeEEEecCCCCChHHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
|.-++|.|++|+|||++++.+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 567999999999999999998875
No 445
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.46 E-value=0.028 Score=49.13 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~ 82 (226)
.++++|++.+++.|++.||... ..+++ .| +..++. |.-+.+.++
T Consensus 58 f~~~~l~~~l~~~l~~~g~~~p--------t~iQ~---~a--------------------i~~i~~-----g~d~i~~a~ 101 (434)
T 2db3_A 58 FTSADLRDIIIDNVNKSGYKIP--------TPIQK---CS--------------------IPVISS-----GRDLMACAQ 101 (434)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSC--------CHHHH---HH--------------------HHHHHT-----TCCEEEECC
T ss_pred hhhcCCCHHHHHHHHHcCCCCC--------CHHHH---HH--------------------HHHHhc-----CCCEEEECC
Confidence 4567899999999999998742 22211 11 122332 345899999
Q ss_pred CCCChHHHHHH-HHHHhcc-ccccCCCCCeEEEEe
Q 036464 83 PGIGKTQLGIQ-LAVNVQI-PVEFGGLGGKAIYIG 115 (226)
Q Consensus 83 ~GsGKT~l~~~-la~~~~l-p~~~~~~~~~vlyi~ 115 (226)
+|+|||...+- +...+.. +......+.+++++.
T Consensus 102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~ 136 (434)
T 2db3_A 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS 136 (434)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred CCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence 99999985433 2222221 100112345788886
No 446
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.43 E-value=0.074 Score=40.66 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.|.|++|+|||+|+..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988654
No 447
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.031 Score=44.34 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
+.++++|++.+.+.|.+.||....+ .++ . .+..++. |.-+.+.+
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~--------------------~i~~~~~-----~~~~li~a 69 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTE--------IQK---Q--------------------TIGLALQ-----GKDVLGAA 69 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCH--------HHH---H--------------------HHHHHHT-----TCCEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhC-----CCCEEEEe
Confidence 3566778888888888888765322 111 1 1222333 24488999
Q ss_pred CCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~ 115 (226)
|+|+|||......+........ ....+.+++|+.
T Consensus 70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 9999999865443333221000 012345788876
No 448
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.40 E-value=0.01 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.+.|.||+|+|||||+..++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999998887653
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.39 E-value=0.013 Score=43.77 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.7
Q ss_pred eeEEEecCCCCChHHHHHHHHHH
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.++.|+||+|+|||++.-.+...
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999998776653
No 450
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.39 E-value=0.014 Score=46.02 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=27.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
....+.+|+|||+++.++|...+ ..|.+|++++
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la------~~G~rVll~d 37 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAK------AAGYRTAGYK 37 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHH------HTTCCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEc
Confidence 34444689999999999999987 4688999987
No 451
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.022 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=21.6
Q ss_pred eeEEEecCCCCChHHHHHHHHHHh
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..+.|+|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 452
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.0056 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.9
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.++.|+|++|+|||||+..++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998887764
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.35 E-value=0.0096 Score=51.22 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=31.0
Q ss_pred CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464 140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193 (226)
Q Consensus 140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~ 193 (226)
+++++++|++++.++. .. ...++..|+++. +.|.+||++.|-..
T Consensus 303 ~p~~lllDEpt~~LD~-----~~----~~~~~~~l~~l~-~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 303 RLDAFFIDEGFSSLDT-----EN----KEKIASVLKELE-RLNKVIVFITHDRE 346 (365)
T ss_dssp TCCEEEEESCCTTSCH-----HH----HHHHHHHHHGGG-GSSSEEEEEESCHH
T ss_pred CCCEEEEeCCCccCCH-----HH----HHHHHHHHHHHH-hCCCEEEEEecchH
Confidence 6899999999976633 11 235566667765 45899998888754
No 454
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.35 E-value=0.016 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCCCeeEEEecCCCCChHHHHHHHH
Q 036464 70 GIGCREVTEIGGVPGIGKTQLGIQLA 95 (226)
Q Consensus 70 Gi~~G~i~~i~G~~GsGKT~l~~~la 95 (226)
..+...++.|.|+||+|||++..+++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHh
Confidence 35778899999999999999998765
No 455
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.32 E-value=0.011 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++ +++.|.||+|+|||||+..++...
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678 999999999999999998887654
No 456
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.32 E-value=0.0058 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.3
Q ss_pred CeeEEEecCCCCChHHHHHHHHH
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
+.++.|.|+||+|||||+..++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 33999999999999999988775
No 457
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.32 E-value=0.044 Score=44.14 Aligned_cols=75 Identities=15% Similarity=-0.008 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
++++|+|++.+.+.|++.||....+ .++ . .++.++. |.-+.+.+
T Consensus 44 ~f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~i~~-----~~~~lv~a 87 (249)
T 3ber_A 44 TFKDLGVTDVLCEACDQLGWTKPTK--------IQI---E--------------------AIPLALQ-----GRDIIGLA 87 (249)
T ss_dssp CTGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHT-----TCCEEEEC
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHhC-----CCCEEEEc
Confidence 3567788888888888888765222 211 1 1222333 24588999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||......+...... ...+.+++|+.
T Consensus 88 ~TGsGKT~~~~~~il~~l~~---~~~~~~~lil~ 118 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLE---TPQRLFALVLT 118 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHH---SCCSSCEEEEC
T ss_pred CCCCCchhHhHHHHHHHHhc---CCCCceEEEEe
Confidence 99999998755444443221 12345688876
No 458
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.30 E-value=0.034 Score=47.45 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
.+++|+|++.+.+.|.+.||.+... .++ .|+ +.++.| .-+.+.+
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~i--------------------~~i~~~-----~~~li~a 65 (400)
T 1s2m_A 22 TFEDFYLKRELLMGIFEAGFEKPSP--------IQE---EAI--------------------PVAITG-----RDILARA 65 (400)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCH--------HHH---HHH--------------------HHHHHT-----CCEEEEC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HHH--------------------HHHhcC-----CCEEEEC
Confidence 4677889999999999988874222 211 111 222322 3378999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||..+...+.....+ ...+.+++|+.
T Consensus 66 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 96 (400)
T 1s2m_A 66 KNGTGKTAAFVIPTLEKVKP---KLNKIQALIMV 96 (400)
T ss_dssp CTTSCHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHhh---ccCCccEEEEc
Confidence 99999998776666555421 11345788887
No 459
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.30 E-value=0.037 Score=43.41 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~ 82 (226)
.++++|++.+.+.|.+.||....+ .++ . .++.++.| .-+.+.+|
T Consensus 16 f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~-----~~~lv~~p 59 (224)
T 1qde_A 16 FDDMELDENLLRGVFGYGFEEPSA--------IQQ---R--------------------AIMPIIEG-----HDVLAQAQ 59 (224)
T ss_dssp GGGGTCCHHHHHHHHHHTCCSCCH--------HHH---H--------------------HHHHHHTT-----CCEEEECC
T ss_pred hhhcCCCHHHHHHHHHCCCCCCcH--------HHH---H--------------------HHHHHhcC-----CCEEEECC
Confidence 567888999999999888865222 111 1 12223332 34899999
Q ss_pred CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|||....-.+...... ...+.+++|+.
T Consensus 60 TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~ 89 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDT---SVKAPQALMLA 89 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhc---cCCCceEEEEE
Confidence 9999997744333333211 12345788886
No 460
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.30 E-value=0.011 Score=47.52 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.6
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.+|.++.|.|++|+||||++..++....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999998887654
No 461
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.29 E-value=0.11 Score=43.96 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
++++++|++.+.+.|.+.||.... ..++ . .++.++. |.-+.+.+
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~--------~~Q~---~--------------------~i~~~~~-----~~~~lv~a 52 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPS--------EVQH---E--------------------CIPQAIL-----GMDVLCQA 52 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCC--------HHHH---H--------------------HHHHHTT-----TCCEEEEC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCC--------HHHH---H--------------------HHHHHhc-----CCcEEEEC
Confidence 567889999999999999986422 2211 1 1222332 24488999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||..+...+...... ...+.+++|+.
T Consensus 53 ~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~ 83 (391)
T 1xti_A 53 KSGMGKTAVFVLATLQQLEP---VTGQVSVLVMC 83 (391)
T ss_dssp SSCSSHHHHHHHHHHHHCCC---CTTCCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHhhcc---cCCCeeEEEEC
Confidence 99999998776666555421 12345788886
No 462
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.27 E-value=0.13 Score=40.06 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=27.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
++.|-|.-||||||.+..++.... ..+.+|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~------~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE------KRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEE
Confidence 578899999999999988887764 3566777664
No 463
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.27 E-value=0.012 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEecCCCCChHHHHHHHHHHhc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
-++++||||+|||+++..+|...-
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998764
No 464
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.26 E-value=0.018 Score=53.02 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.9
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+.++.|.||||+|||+++..++..... ..+.+++.+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~-----~~~~~ilv~a 231 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLAR-----QGNGPVLVCA 231 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHT-----SSSCCEEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHH-----cCCCeEEEEe
Confidence 458899999999999999988877651 1456777766
No 465
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.25 E-value=0.22 Score=45.00 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG 115 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~ 115 (226)
.|.-+.+.+|+|+|||....-.+........ ....+.+++++.
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~ 102 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVA 102 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEEC
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEc
Confidence 4678899999999999754333333221110 112235788887
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.25 E-value=0.013 Score=46.92 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.8
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
|.++.|.|.+|+||||++..++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998875
No 467
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.24 E-value=0.013 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHH
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~ 97 (226)
+|.-+.|.|+||+|||+|...++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5677899999999999999998864
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.23 E-value=0.013 Score=50.27 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCee--EEEecCCCCChHHHHHHHHHHhcc
Q 036464 72 GCREV--TEIGGVPGIGKTQLGIQLAVNVQI 100 (226)
Q Consensus 72 ~~G~i--~~i~G~~GsGKT~l~~~la~~~~l 100 (226)
++|.. +.|.|+||+||||++..++.....
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44555 899999999999999988876543
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.20 E-value=0.018 Score=45.77 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
+|.++.|.|++|+||||.+..++....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998887764
No 470
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.20 E-value=0.079 Score=50.04 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
..|+.+.++||+|+|||+++-.++....... +.+..++++.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~---~~g~~ilvl~ 147 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPH---LENTQVACTQ 147 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHCGG---GGTCEEEEEE
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHhcccc---CCCceEEecC
Confidence 3468999999999999997766655433210 1134577665
No 471
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.17 E-value=0.047 Score=48.08 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
+++.++|++.+++.|.+.||..... +++ . .+..++.| .+.-+++.+
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~--------~Q~---~--------------------ai~~il~~---~~~~~l~~a 138 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSK--------IQE---N--------------------ALPLMLAE---PPQNLIAQS 138 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHTSB---SCCEEEEEC
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHHcC---CCCcEEEEc
Confidence 3566778999999999999875222 211 1 12333432 357899999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
|+|+|||......+...... +..+.+++|+.-
T Consensus 139 ~TGsGKT~~~~l~il~~l~~---~~~~~~~lil~P 170 (479)
T 3fmp_B 139 QSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLSP 170 (479)
T ss_dssp CSSSSHHHHHHHHHHTTCCT---TSCSCCEEEECS
T ss_pred CCCCchhHHHHHHHHHHHhh---cCCCCcEEEEeC
Confidence 99999998765555444321 122337888863
No 472
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.15 E-value=0.05 Score=43.06 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464 2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG 81 (226)
Q Consensus 2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G 81 (226)
.+++|+|++.+.+.|.+.||....+ .++ .+ ++.++. |.-+.+.+
T Consensus 25 ~f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----~~~~l~~a 68 (230)
T 2oxc_A 25 DFESLLLSRPVLEGLRAAGFERPSP--------VQL---KA--------------------IPLGRC-----GLDLIVQA 68 (230)
T ss_dssp CGGGGTCCHHHHHHHHHTTCCSCCH--------HHH---HH--------------------HHHHHT-----TCCEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHhC-----CCCEEEEC
Confidence 3567788888888888888864222 211 11 122332 24478999
Q ss_pred CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|+|+|||....-.+...... ...+.+++|+.
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~ 99 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVL---ENLSTQILILA 99 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHh---cCCCceEEEEe
Confidence 99999997644333333211 12346788887
No 473
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.12 E-value=0.015 Score=50.86 Aligned_cols=25 Identities=48% Similarity=0.755 Sum_probs=22.3
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..++.|+||+|+|||+|+..++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999876
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.12 E-value=0.0063 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+++|+++.|.||+|+|||||+..++...
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999998877654
No 475
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.12 E-value=0.012 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
.+.|.|++|+|||+|+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988754
No 476
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.10 E-value=0.013 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.1
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.|.|++|+|||+|+..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 477
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.09 E-value=0.013 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
+.+| ++.|+|++|+|||+++-.+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 5567 999999999999999987764
No 478
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.05 E-value=0.019 Score=53.02 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+|.++.|+|.|||||||++..++.... ..+.+++++|.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~------~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV------CHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEechH
Confidence 678999999999999999999988763 235567777644
No 479
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.05 E-value=0.028 Score=44.85 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464 3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV 82 (226)
Q Consensus 3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~ 82 (226)
.++|+|++.+++.|.+.||....+ .++ . .++.++.| .-+.+.+|
T Consensus 32 f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------ai~~i~~~-----~~~li~ap 75 (237)
T 3bor_A 32 FDDMNLKESLLRGIYAYGFEKPSA--------IQQ---R--------------------AIIPCIKG-----YDVIAQAQ 75 (237)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCH--------HHH---H--------------------HHHHHHTT-----CCEEECCC
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhCC-----CCEEEECC
Confidence 567788888888888888764222 111 1 12223332 34789999
Q ss_pred CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
+|+|||......+...... ...+.+++|+.
T Consensus 76 TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~ 105 (237)
T 3bor_A 76 SGTGKTATFAISILQQLEI---EFKETQALVLA 105 (237)
T ss_dssp SSHHHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHh---cCCCceEEEEE
Confidence 9999997755444444311 12345788887
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.05 E-value=0.029 Score=44.05 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.8
Q ss_pred eeEEEecCCCCChHHHHHHHHHHhc
Q 036464 75 EVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 75 ~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..+.|+|++|+|||+|+.+++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688889999999999999998753
No 481
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.98 E-value=0.022 Score=46.26 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCeeEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 73 CREVTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 73 ~G~i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
.+.++.+ .+..|+||||++.++|...+ .+.+|+.||..
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-------~g~~VlliD~D 64 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-------KNNKVLLIDMD 64 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-------TTSCEEEEEEC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-------CCCCEEEEECC
Confidence 3455555 66799999999999998875 57899999965
No 482
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.98 E-value=0.017 Score=50.58 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+..|.++.|.||+|+|||+++..++.-.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4568999999999999999998777544
No 483
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.98 E-value=0.0058 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
..|.-+.|+||||+|||+++..++...
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 345578999999999999999888765
No 484
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.97 E-value=0.063 Score=40.98 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.6
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~ 97 (226)
-+.|.|++|+|||+|+..++..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988644
No 485
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.94 E-value=0.2 Score=44.98 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=25.9
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG 115 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~ 115 (226)
.|.-+++.+|+|+|||....-.+........ ....+.+++|+.
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~ 153 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVA 153 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEEC
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEc
Confidence 4678999999999999764433333221100 011234788887
No 486
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.94 E-value=0.015 Score=49.97 Aligned_cols=25 Identities=36% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464 71 IGCREVTEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 71 i~~G~i~~i~G~~GsGKT~l~~~la~ 96 (226)
+.+| ++.|+||+|+|||++...++.
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 5677 999999999999999888765
No 487
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.93 E-value=0.018 Score=47.53 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.3
Q ss_pred eEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464 76 VTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL 118 (226)
Q Consensus 76 i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~ 118 (226)
++.| .+..|+||||++.++|...+ ..+.+|+.||...
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La------~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALL------YGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHH------HTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH------HCCCcEEEEECCC
Confidence 4444 46789999999999999987 4688999999653
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.92 E-value=0.036 Score=43.67 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=28.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~ 115 (226)
|..+.|-|..||||||.+..++.... .+.+|++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-------~~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-------KDYDVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-------TTSCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-------CCCCEEEee
Confidence 56899999999999999988887763 456676654
No 489
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.91 E-value=0.016 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEecCCCCChHHHHHHHHHH
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVN 97 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~ 97 (226)
.+.|.|++|+|||+|...++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999764
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.89 E-value=0.11 Score=39.96 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.9
Q ss_pred eEEEecCCCCChHHHHHHHHHHh
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-+.|.|++|+|||+|+..++..-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999987654
No 491
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.87 E-value=0.021 Score=45.50 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
.+|.++.+.|++|+||||.+..++....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999988764
No 492
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.84 E-value=0.014 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
-.++.|+|++|+||||++..++...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3589999999999999999888653
No 493
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.82 E-value=0.032 Score=50.43 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=29.3
Q ss_pred CCeeEEEecCCCCChHHHHHHHHHH--hccccccCCCCCeEEEEec
Q 036464 73 CREVTEIGGVPGIGKTQLGIQLAVN--VQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 73 ~G~i~~i~G~~GsGKT~l~~~la~~--~~lp~~~~~~~~~vlyi~~ 116 (226)
...++.|+|.+|+|||+||.+++.. .... ..-..++|++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~----~~F~~~~wv~v 192 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIG----INYDSIVWLKD 192 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBT----TTBSEEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHh----ccCCcEEEEEE
Confidence 4589999999999999999999862 1111 22257888874
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.82 E-value=0.019 Score=45.00 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.7
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHh
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNV 98 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~ 98 (226)
+.++.|+|++|+|||+++..++...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999888764
No 495
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.76 E-value=0.11 Score=55.26 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-------------CCC
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-------------HKD 140 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-------------~~~ 140 (226)
|.-++++||||+|||+++.+++... .+..++.+... ...........++..+.. ..+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~--------~~~~~~~infs--a~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk 1336 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS--------SLYDVVGINFS--KDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIK 1336 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC--------SSCEEEEEECC--TTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC--------CCCceEEEEee--cCCCHHHHHHHHHHHhhhccccCCccccCCCCCc
Q ss_pred ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464 141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL 183 (226)
Q Consensus 141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~ 183 (226)
.-+++||++...-...+..- .....|+++....++
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q--------~~lelLRq~le~gg~ 1371 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQ--------NVVLFLRQLMEKQGF 1371 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCC--------HHHHHHHHHHHTSSE
T ss_pred eEEEEecccccccccccCch--------hHHHHHHHHHhcCCE
No 496
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.75 E-value=0.015 Score=44.36 Aligned_cols=20 Identities=45% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEecCCCCChHHHHHHHHH
Q 036464 77 TEIGGVPGIGKTQLGIQLAV 96 (226)
Q Consensus 77 ~~i~G~~GsGKT~l~~~la~ 96 (226)
+.|.|++|+|||+|+..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998875
No 497
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.74 E-value=0.14 Score=40.76 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQ 99 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~ 99 (226)
..++.|.|++|||||+++..++...-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.74 E-value=0.023 Score=51.58 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=31.3
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
+.++.++|.+|+||||++..++.... ..+.++.+++.+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~------~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ------ARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh------hcCCeEEEECch
Confidence 78999999999999999999988753 245678888854
No 499
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.73 E-value=0.024 Score=49.60 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.2
Q ss_pred CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464 74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK 116 (226)
Q Consensus 74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~ 116 (226)
..-+.|.|++|+|||+++..++.++. ..+.+++.+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~------~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGL------LRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHH------HTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEeC
Confidence 34689999999999999877777765 35667888873
No 500
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=94.66 E-value=0.012 Score=50.40 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=30.0
Q ss_pred eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464 76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC 117 (226)
Q Consensus 76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e 117 (226)
|....+..|+||||++.++|...+ ..+.+|+.||..
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA------~~G~rVLlID~D 39 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFA------LQGKRVLYVDCD 39 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHH------hCCCcEEEEEcC
Confidence 344457899999999999999987 478999999954
Done!