BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036465
         (284 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q53U11|NEOK_STRFR UDP-GlcNAc:ribostamycin N-acetylglucosaminyltransferase
           OS=Streptomyces fradiae GN=neoK PE=1 SV=1
          Length = 366

 Score = 35.8 bits (81), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 25/111 (22%)

Query: 122 TNWFPKRSGSVGKSDGP----LCEPSSPKVSCIGRVRSKRDRRRLKKRQGSGSESGSLRS 177
           T  FP+RS     +D      LC+PS P V  +G++ +    R L++  G+G        
Sbjct: 154 TRCFPRRSVIPWAADHVPAKDLCDPSGPVVLQLGKIDTVDAERCLRRLTGAG-------- 205

Query: 178 KSERKQKSGLFASLKTIFRL--RKGSEGKSRERRKESSDRKSGVITTHDIR 226
                       +L+ +F    R+G E +   R  + + R+  V+  +DIR
Sbjct: 206 -----------VALRVVFATWSRRGREARELVRAHQGAGRRVEVLDAYDIR 245


>sp|Q9SGS5|Y1607_ARATH Uncharacterized protein At1g76070 OS=Arabidopsis thaliana
           GN=At1g76070 PE=1 SV=1
          Length = 272

 Score = 32.7 bits (73), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 133 GKSDGPLCEPSSPKVSCIGRVRSKRDRRRLKKRQGSGSE-----SGSLRSKSERKQKSGL 187
            KSD    EP+SPKVSCIG+++  + +    K+  + S      S +  S   ++ + G 
Sbjct: 74  NKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGR 133

Query: 188 FASLKTIFRLRKGSEGKSRERR 209
            + +K+IF     S G++  R+
Sbjct: 134 LSKIKSIFSFSPAS-GRNTSRK 154


>sp|A8LLD9|RNC_DINSH Ribonuclease 3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rnc
           PE=3 SV=1
          Length = 229

 Score = 31.2 bits (69), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 199 KGSEGKSRERRKE-SSDRKSGVITTHDIRDRLPRGEAHALSKRVESPPRKSIASEPRRSV 257
           + + G+S  +R E   DR  G++    + +  P+     L+ R  +  RK   +E  R +
Sbjct: 33  RSTAGRSDNQRLEFLGDRVLGLVMAEALLEADPQAREGQLAPRYNALVRKETCAEVAREI 92

Query: 258 D-GEPVGLGGMTRFASGRRSDSWIGD 282
             G+ + LG       GRR D+ +GD
Sbjct: 93  GLGDVLRLGRSEMLTGGRRKDALLGD 118


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,944,963
Number of Sequences: 539616
Number of extensions: 5102679
Number of successful extensions: 13295
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 12915
Number of HSP's gapped (non-prelim): 506
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)