Query 036465
Match_columns 284
No_of_seqs 40 out of 42
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 12:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 MTH00036 ATP8 ATP synthase F0 21.8 38 0.00083 25.2 0.5 7 1-7 1-7 (54)
2 MTH00169 ATP8 ATP synthase F0 20.1 48 0.001 25.5 0.8 9 1-9 1-9 (67)
3 MTH00025 ATP8 ATP synthase F0 18.5 53 0.0012 25.7 0.7 8 1-8 1-8 (70)
4 KOG3356 Predicted membrane pro 11.4 99 0.0021 27.2 0.6 25 256-280 50-83 (147)
5 PRK13526 glutamine amidotransf 11.0 1.3E+02 0.0028 27.0 1.2 22 262-283 90-115 (179)
6 PRK06569 F0F1 ATP synthase sub 9.1 1.4E+02 0.0031 26.3 0.7 11 1-11 1-11 (155)
7 MTH00102 ATP8 ATP synthase F0 7.6 1.7E+02 0.0038 22.2 0.5 5 1-5 1-5 (67)
8 KOG0540 3-Methylcrotonyl-CoA c 6.8 1.5E+02 0.0033 31.0 -0.1 15 259-273 348-363 (536)
9 PRK13454 F0F1 ATP synthase sub 6.7 2.1E+02 0.0045 25.0 0.7 11 1-11 22-32 (181)
10 PF10905 DUF2695: Protein of u 6.3 2.7E+02 0.0059 20.8 1.0 22 3-24 29-52 (53)
No 1
>MTH00036 ATP8 ATP synthase F0 subunit 8; Validated
Probab=21.80 E-value=38 Score=25.23 Aligned_cols=7 Identities=57% Similarity=1.094 Sum_probs=4.1
Q ss_pred CCCcchh
Q 036465 1 MPQVDLE 7 (284)
Q Consensus 1 MPQvDLE 7 (284)
|||||.-
T Consensus 1 MPQLd~s 7 (54)
T MTH00036 1 MPQLDFT 7 (54)
T ss_pred CCCCcch
Confidence 6666654
No 2
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=20.14 E-value=48 Score=25.50 Aligned_cols=9 Identities=56% Similarity=0.726 Sum_probs=4.9
Q ss_pred CCCcchhhh
Q 036465 1 MPQVDLETL 9 (284)
Q Consensus 1 MPQvDLEsL 9 (284)
|||+|..+.
T Consensus 1 MPQLd~~~f 9 (67)
T MTH00169 1 MPQLDSVTY 9 (67)
T ss_pred CCCCchHHH
Confidence 566665443
No 3
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=18.52 E-value=53 Score=25.71 Aligned_cols=8 Identities=63% Similarity=0.924 Sum_probs=4.1
Q ss_pred CCCcchhh
Q 036465 1 MPQVDLET 8 (284)
Q Consensus 1 MPQvDLEs 8 (284)
|||+|..+
T Consensus 1 MPQLd~~~ 8 (70)
T MTH00025 1 MPQLDTTT 8 (70)
T ss_pred CCCcchhH
Confidence 55555543
No 4
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=11.44 E-value=99 Score=27.23 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=17.3
Q ss_pred CCCCCCcccccccc---------cccCCCCcccc
Q 036465 256 SVDGEPVGLGGMTR---------FASGRRSDSWI 280 (284)
Q Consensus 256 ~~~~eppGlggM~R---------FaSGRRs~sW~ 280 (284)
++--||||+|.|+- |-+||-.-.+|
T Consensus 50 dvivepp~igs~~d~~g~~rpv~fla~rvngqyi 83 (147)
T KOG3356|consen 50 DVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYI 83 (147)
T ss_pred EEEecCCCCCcccccCCcCcceEEEeccccceee
Confidence 34568999999984 66666554444
No 5
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=11.00 E-value=1.3e+02 Score=26.97 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=18.1
Q ss_pred cccc----cccccccCCCCccccccC
Q 036465 262 VGLG----GMTRFASGRRSDSWIGDV 283 (284)
Q Consensus 262 pGlg----gM~RFaSGRRs~sW~~~~ 283 (284)
+||| -+.||+.||.-+||+-++
T Consensus 90 ~~Lg~idg~V~Rn~~Grq~~sf~~~~ 115 (179)
T PRK13526 90 GYLNLLDLEVQRNAYGRQVDSFVADI 115 (179)
T ss_pred CCCCCccEEEEEcCCCCccceeeeec
Confidence 4666 578999999999998764
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=9.07 E-value=1.4e+02 Score=26.33 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=0.0
Q ss_pred CCCcchhhhhh
Q 036465 1 MPQVDLETLVS 11 (284)
Q Consensus 1 MPQvDLEsLv~ 11 (284)
|||+|..++.+
T Consensus 1 mPQfd~~~~~s 11 (155)
T PRK06569 1 MPQFDIATYYS 11 (155)
T ss_pred CCCCchhhhhH
No 7
>MTH00102 ATP8 ATP synthase F0 subunit 8; Validated
Probab=7.62 E-value=1.7e+02 Score=22.25 Aligned_cols=5 Identities=80% Similarity=1.404 Sum_probs=0.0
Q ss_pred CCCcc
Q 036465 1 MPQVD 5 (284)
Q Consensus 1 MPQvD 5 (284)
|||+|
T Consensus 1 MPQLn 5 (67)
T MTH00102 1 MPQLD 5 (67)
T ss_pred CCCCC
No 8
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=6.77 E-value=1.5e+02 Score=31.04 Aligned_cols=15 Identities=47% Similarity=0.902 Sum_probs=0.0
Q ss_pred CCCccccccc-ccccC
Q 036465 259 GEPVGLGGMT-RFASG 273 (284)
Q Consensus 259 ~eppGlggM~-RFaSG 273 (284)
+.|+||+||+ |||+|
T Consensus 348 G~tVgIvgnn~kf~~G 363 (536)
T KOG0540|consen 348 GRTVGIVGNNPKFAGG 363 (536)
T ss_pred CEEEEEeccCchhccc
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=6.70 E-value=2.1e+02 Score=24.98 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=0.0
Q ss_pred CCCcchhhhhh
Q 036465 1 MPQVDLETLVS 11 (284)
Q Consensus 1 MPQvDLEsLv~ 11 (284)
|||+|+.++..
T Consensus 22 mp~ld~~t~~~ 32 (181)
T PRK13454 22 MPQLDFSTFPN 32 (181)
T ss_pred CCCCcHHhcch
No 10
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=6.32 E-value=2.7e+02 Score=20.79 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=0.0
Q ss_pred Ccchhhhhhcc--CCCCCCccccC
Q 036465 3 QVDLETLVSAC--AEPKSRAHHDA 24 (284)
Q Consensus 3 QvDLEsLv~~~--aG~~~dCEt~a 24 (284)
+++-|+++-.. -||.||||-++
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeec
Done!