Query 036465
Match_columns 284
No_of_seqs 40 out of 42
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 22:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f8v_D Mature capsid protein g 5.6 2.6E+02 0.009 19.2 1.6 15 186-200 2-16 (40)
2 2rps_A Chemokine; peptide, imm 4.9 2.1E+02 0.0071 18.9 0.6 12 265-276 9-20 (32)
3 3or1_C Sulfite reductase GAMA; 4.6 1.3E+02 0.0046 23.8 -0.5 10 98-107 92-102 (105)
4 1zla_K Latent nuclear antigen; 4.6 2.5E+02 0.0086 17.6 0.8 13 260-276 2-14 (26)
5 4b6m_A Tubulin-specific chaper 4.5 2.4E+02 0.0082 21.6 0.9 8 34-41 77-84 (84)
6 2i3f_A Glycolipid transfer-lik 3.8 2.6E+02 0.0087 24.4 0.5 16 47-64 197-212 (224)
7 3pvl_B Usher syndrome type-1G 3.7 2.4E+02 0.0083 22.5 0.3 7 262-268 16-22 (96)
8 1nov_D Nodamura virus coat pro 3.7 3.9E+02 0.013 18.7 1.3 15 186-200 2-16 (44)
9 2z2q_B Coat protein gamma; wil 3.7 4E+02 0.014 18.7 1.3 15 186-200 2-16 (44)
10 2gia_B MRP1, mitochondrial RNA 3.6 1.8E+02 0.0061 25.3 -0.6 13 1-13 69-81 (187)
No 1
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=5.63 E-value=2.6e+02 Score=19.23 Aligned_cols=15 Identities=7% Similarity=0.279 Sum_probs=13.0
Q ss_pred chhHHHHHHHhhcCC
Q 036465 186 GLFASLKTIFRLRKG 200 (284)
Q Consensus 186 G~~asv~aifR~~~~ 200 (284)
-||+-|++|+..+-+
T Consensus 2 ~mWErVk~ilks~l~ 16 (40)
T 1f8v_D 2 KFWEGVLRVLNQISG 16 (40)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHH
Confidence 489999999998776
No 2
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=4.86 E-value=2.1e+02 Score=18.91 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.1
Q ss_pred ccccccccCCCC
Q 036465 265 GGMTRFASGRRS 276 (284)
Q Consensus 265 ggM~RFaSGRRs 276 (284)
|||++..+|+=.
T Consensus 9 ~~M~~L~~gqC~ 20 (32)
T 2rps_A 9 DGMQMLRSGQCV 20 (32)
T ss_dssp TTEEECSSSCEE
T ss_pred CCCceecccccC
Confidence 799999999854
No 3
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=4.63 E-value=1.3e+02 Score=23.76 Aligned_cols=10 Identities=50% Similarity=1.046 Sum_probs=7.9
Q ss_pred eE-EEccCCCC
Q 036465 98 TS-IIGLPKPQ 107 (284)
Q Consensus 98 Aa-IiGLP~~q 107 (284)
|+ |-|||+|.
T Consensus 92 a~kiAGLPKP~ 102 (105)
T 3or1_C 92 ACKMAGLPKPT 102 (105)
T ss_dssp HHHHHTCCCCC
T ss_pred HHHHhCCCCCC
Confidence 44 99999974
No 4
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=4.61 E-value=2.5e+02 Score=17.59 Aligned_cols=13 Identities=46% Similarity=0.925 Sum_probs=9.0
Q ss_pred CCcccccccccccCCCC
Q 036465 260 EPVGLGGMTRFASGRRS 276 (284)
Q Consensus 260 eppGlggM~RFaSGRRs 276 (284)
.|||+ |..|||-.
T Consensus 2 appgm----rlrsgrst 14 (26)
T 1zla_K 2 APPGM----RLRSGRST 14 (26)
T ss_pred CCCcc----eeecCccc
Confidence 46774 78888854
No 5
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=4.53 E-value=2.4e+02 Score=21.56 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=6.5
Q ss_pred CCCCCCce
Q 036465 34 PDLPPDSF 41 (284)
Q Consensus 34 pd~PPES~ 41 (284)
-|+|||.|
T Consensus 77 gd~Ppe~f 84 (84)
T 4b6m_A 77 GDFPPEVF 84 (84)
T ss_dssp CCCCCCCC
T ss_pred CCcCCCCC
Confidence 57999986
No 6
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=3.80 E-value=2.6e+02 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.8
Q ss_pred Cccccccccceeeccccc
Q 036465 47 AEFDWFDRNAFYERKESQ 64 (284)
Q Consensus 47 ~e~~Wsd~navyERddSt 64 (284)
++.+|.|. ||.|+||.
T Consensus 197 ~d~~~~~~--~~~~~~~~ 212 (224)
T 2i3f_A 197 EDQCWGDE--VYQRKDSS 212 (224)
T ss_dssp CSSCCCCT--TTTSSSTT
T ss_pred CCcccchH--hhcccchH
Confidence 46789884 89999985
No 7
>3pvl_B Usher syndrome type-1G protein; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Homo sapiens}
Probab=3.74 E-value=2.4e+02 Score=22.47 Aligned_cols=7 Identities=57% Similarity=0.885 Sum_probs=6.3
Q ss_pred ccccccc
Q 036465 262 VGLGGMT 268 (284)
Q Consensus 262 pGlggM~ 268 (284)
||||.|.
T Consensus 16 PGLG~mV 22 (96)
T 3pvl_B 16 PGLGTMV 22 (96)
T ss_pred CCCccee
Confidence 9999995
No 8
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=3.71 E-value=3.9e+02 Score=18.73 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=12.1
Q ss_pred chhHHHHHHHhhcCC
Q 036465 186 GLFASLKTIFRLRKG 200 (284)
Q Consensus 186 G~~asv~aifR~~~~ 200 (284)
-||+-|++|+..+-+
T Consensus 2 ~mWErVk~ilks~l~ 16 (44)
T 1nov_D 2 TFWERVRSILKSGLN 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 489999999987654
No 9
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=3.68 E-value=4e+02 Score=18.66 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.3
Q ss_pred chhHHHHHHHhhcCC
Q 036465 186 GLFASLKTIFRLRKG 200 (284)
Q Consensus 186 G~~asv~aifR~~~~ 200 (284)
-||+-|++|+..+-+
T Consensus 2 ~~WErVk~ilks~l~ 16 (44)
T 2z2q_B 2 SMWERVKSIIKSSLA 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 489999999987664
No 10
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=3.64 E-value=1.8e+02 Score=25.34 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=0.0
Q ss_pred CCCcchhhhhhcc
Q 036465 1 MPQVDLETLVSAC 13 (284)
Q Consensus 1 MPQvDLEsLv~~~ 13 (284)
|-+|||--|||+|
T Consensus 69 ~RHvDLA~lV~V~ 81 (187)
T 2gia_B 69 LRHVDLAYLVGVC 81 (187)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eeecchhhheeeh
Done!