BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036466
(727 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 440 SAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDI-- 497
+ + LP L L L+ N ++ LP SI L L+ L++ C EL ELP+ +
Sbjct: 114 AGLXELPDTXQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 498 -------RYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVL 550
+ LV+L+ + L + I L +L+ L I N L L I L L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKL 231
Query: 551 RSLVVNACPRLNLLPPAMKYLSSLERLIFDECESL 585
L + C L PP + L+RLI +C +L
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 432 LRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICE---------LQSLQTL 482
L L L + + LP + +L +LR L + ++ +LP + L +LQ+L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 483 NLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFE 542
L + + LP I L +L+ + S L I L L L + C L
Sbjct: 189 RL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 543 DIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLS 586
+ L+ L++ C L LP + L+ LE+L C +LS
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 642 DCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPL 701
D LP + + LE L + P L +LP + L L+ L+I CP L E +PL
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 702 TGED 705
D
Sbjct: 171 ASTD 174
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 415 ERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSIC 474
E T + + I+ ++L+ L + NS + L + +L +L LDL G ++ P
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 475 ELQSLQTLNLGDCLELEELPKDIRYLVSL 503
L+ L L DC L LP DI L L
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 635 LQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGM 677
L+TL + P ALP S+ L L L I CP+L+ LPE +
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPL 170
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 648 ALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694
+LP S+ +L+ L++L I P LS+L +HHL L+ L + C AL
Sbjct: 197 SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 46/243 (18%)
Query: 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV--ALIMATMRGTTGYNLQ 213
R LL++DDVW+ +W +L +IL+TTR V +++ +L
Sbjct: 237 RSLLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 214 ELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDW 273
+ + LSLF+ K +L + I+++C+G PL V +G+LL + W
Sbjct: 288 KEKGLEILSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--W 338
Query: 274 EY----VRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASV 325
EY +++ ++R++ + + A+ +S + L +K + SI KD + +
Sbjct: 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398
Query: 326 HLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRS-FFQDLGDLLPGLEVFNFQIHDLM 384
L LW + EE+E+I +E ++S F D + F + +HDL
Sbjct: 399 VLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNG-----KSFRYYLHDLQ 441
Query: 385 HDL 387
D
Sbjct: 442 VDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 46/243 (18%)
Query: 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV--ALIMATMRGTTGYNLQ 213
R LL++DDVW+ +W +L +IL+TTR V +++ +L
Sbjct: 243 RSLLILDDVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 214 ELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDW 273
+ + LSLF+ K +L + I+++C+G PL V +G+LL + W
Sbjct: 294 KEKGLEILSLFVNM-------KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--W 344
Query: 274 EY----VRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASV 325
EY +++ ++R++ + + A+ +S + L +K + SI KD + +
Sbjct: 345 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 404
Query: 326 HLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRS-FFQDLGDLLPGLEVFNFQIHDLM 384
L LW + EE+E+I +E ++S F D + F + +HDL
Sbjct: 405 VLCILW--------DMETEEVEDI----LQEFVNKSLLFCDRNG-----KSFRYYLHDLQ 447
Query: 385 HDL 387
D
Sbjct: 448 VDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 50/245 (20%)
Query: 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV--ALIMATMRGTTGYNLQ 213
R LL++DDVW DP W +L +IL+TTR V +++ L
Sbjct: 237 RSLLILDDVW--DP--W-----VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 214 ELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDW 273
+ LSLF+ K +L I+++C+G PL V +G+LL + W
Sbjct: 288 REKGLEILSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR--W 338
Query: 274 EY----VRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASV 325
Y +++ ++R++ + + A+ +S + L +K + SI KD + +
Sbjct: 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398
Query: 326 HLVQLWMAHGLLQSPNKNEELENIGMRYFKE---LCSRSFFQDLGDLLPGLEVFNFQIHD 382
L LW + EE+E+I + + C+R+ + F + +HD
Sbjct: 399 VLCVLW--------DLETEEVEDILQEFVNKSLLFCNRNG-----------KSFCYYLHD 439
Query: 383 LMHDL 387
L D
Sbjct: 440 LQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 52/246 (21%)
Query: 156 RYLLVMDDVWNEDP---RAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNL 212
R LL++DDVW DP +A+ +LL ++ S V + + + G +
Sbjct: 244 RSLLILDDVW--DPWVLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEI 301
Query: 213 QELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHD 272
LSLF+ K +L I+++C+G PL V +G+LL +
Sbjct: 302 --------LSLFVNM-------KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR-- 344
Query: 273 WEY----VRDNDIWKLRQAP----DDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFAS 324
W Y +++ ++R++ + + A+ +S + L +K + SI KD + +
Sbjct: 345 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 404
Query: 325 VHLVQLWMAHGLLQSPNKNEELENIGMRYFKE---LCSRSFFQDLGDLLPGLEVFNFQIH 381
L LW + EE+E+I + + C+R+ + F + +H
Sbjct: 405 KVLCVLW--------DLETEEVEDILQEFVNKSLLFCNRNG-----------KSFCYYLH 445
Query: 382 DLMHDL 387
DL D
Sbjct: 446 DLQVDF 451
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 425 CISKSKSLRVLVLTNSAIEV-LPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLN 483
C + +L+ L L N+ +P + N +L L LS N +P+S+ L L+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 484 LGDCLELEELPKDIRYLVSLRMFVVTTKQ-KSLLESGIGCLSSLRFLMISN---CGNLEY 539
L + E+P+++ Y+ +L ++ + SG+ ++L ++ +SN G +
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 540 LFEDIDQLSVLR 551
++ L++L+
Sbjct: 506 WIGRLENLAILK 517
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 425 CISKSKSLRVLVLTNSAIEV-LPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLN 483
C + +L+ L L N+ +P + N +L L LS N +P+S+ L L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 484 LGDCLELEELPKDIRYLVSLRMFVVTTKQ-KSLLESGIGCLSSLRFLMISN---CGNLEY 539
L + E+P+++ Y+ +L ++ + SG+ ++L ++ +SN G +
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 540 LFEDIDQLSVLR 551
++ L++L+
Sbjct: 509 WIGRLENLAILK 520
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 178 LLLGGAEGSKILVTTR---SNKVALIMATMRGTTG--YNLQELPYKDCLSLFMKCAFKVG 232
L++G GS+I+ T SN + M + +++Q LP D L + F +
Sbjct: 87 LVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLP--DELRIE---KFGMP 141
Query: 233 QEKHPNLVKIGEKIVEK-----CRGIPLAVRTVGSLLYGSTD 269
+ NL K+G +IV K I + +T GS+ YGSTD
Sbjct: 142 ADVKDNLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTD 183
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 178 LLLGGAEGSKILVTTR---SNKVALIMATMRGTTG--YNLQELPYKDCLSLFMKCAFKVG 232
L++G GS+I+ T SN + M + +++Q LP D L + F +
Sbjct: 87 LVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLP--DELRIE---KFGMP 141
Query: 233 QEKHPNLVKIGEKIVEK-----CRGIPLAVRTVGSLLYGSTD 269
+ NL K+G +IV K I + +T GS+ YGSTD
Sbjct: 142 ADVKDNLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGSTD 183
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 244 EKIVEKCRGIPLAVRTVGSLLYGST-------DEHDWEYVRDNDIWKLRQA 287
+ E+ R + LA TVGS LYG+ D DW YV + + R A
Sbjct: 69 NAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSA 119
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 244 EKIVEKCRGIPLAVRTVGSLLYGST-------DEHDWEYVRDNDIWKLRQA 287
+ E+ R + LA TVGS LYG+ D DW YV + + R A
Sbjct: 69 NAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSA 119
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 244 EKIVEKCRGIPLAVRTVGSLLYGST-------DEHDWEYVRDNDIWKLRQA 287
+ E+ R + LA TVGS LYG+ D DW YV + + R A
Sbjct: 69 NAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSA 119
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 244 EKIVEKCRGIPLAVRTVGSLLYGST-------DEHDWEYVRDNDIWKLRQA 287
+ E+ R + LA TVGS LYG+ D DW YV + + R A
Sbjct: 69 NAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSA 119
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 115 SEDSGKRQIMTKIINSVTGGNHGNLDPDRL-QKVLRDSLNGKRYLLVMDDVWNED----P 169
+ED ++I TK TG DP +L K+ +D + RYLL MD +W + P
Sbjct: 232 NEDGDIKRISTKEWAKSTG-----YDPVKLFTKLFKDDI---RYLLTMDKLWRKRKPPVP 283
Query: 170 RAWGELKS 177
W E++S
Sbjct: 284 LDWAEVQS 291
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 413 DDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNS 472
D+++ S+ S +S + S +L T++ LP + ++ LDL N KIK +P
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNIL--TDTIFRCLPPR------IKVLDLHSN-KIKSIPKQ 439
Query: 473 ICELQSLQTLNLGDCLELEELPKDI 497
+ +L++LQ LN+ +L+ +P I
Sbjct: 440 VVKLEALQELNVASN-QLKSVPDGI 463
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 115 SEDSGKRQIMTKIINSVTGGNHGNLDPDRL-QKVLRDSLNGKRYLLVMDDVWNED----P 169
+ED ++I TK TG DP +L K+ +D + RYLL MD +W + P
Sbjct: 250 NEDGDIKRISTKEWAKSTG-----YDPVKLFTKLFKDDI---RYLLTMDKLWRKRKPPVP 301
Query: 170 RAWGELKS 177
W E++S
Sbjct: 302 LDWAEVQS 309
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 115 SEDSGKRQIMTKIINSVTGGNHGNLDPDRL-QKVLRDSLNGKRYLLVMDDVWNED----P 169
+ED ++I TK TG DP +L K+ +D + RYLL MD +W + P
Sbjct: 230 NEDGDIKRISTKEWAKSTG-----YDPVKLFTKLFKDDI---RYLLTMDKLWRKRKPPVP 281
Query: 170 RAWGELKS 177
W E++S
Sbjct: 282 LDWAEVQS 289
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 633 KTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSS--LPEGMHHLTTLKTLAIEE 690
KT+ L C N + +E LE V C KLSS LP T LKT+ +
Sbjct: 275 KTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTLP------TALKTIQVYA 328
Query: 691 CPALCERCKPLTGEDWPK-IAHIPQIVFDGEMI 722
+ CK L+ +PK I I F+G I
Sbjct: 329 ----FKNCKALSTISYPKSITLIESGAFEGSSI 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,329,952
Number of Sequences: 62578
Number of extensions: 804420
Number of successful extensions: 2112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2067
Number of HSP's gapped (non-prelim): 82
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)