Query 036466
Match_columns 727
No_of_seqs 264 out of 3866
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-62 9.3E-67 545.6 33.3 491 5-511 114-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-57 9.6E-62 534.7 47.5 632 3-696 134-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-37 2.5E-42 317.3 14.3 279 54-340 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.5E-23 1.2E-27 245.0 18.2 283 403-692 69-367 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.2E-23 1.4E-27 244.5 14.8 258 422-692 156-439 (968)
6 KOG4194 Membrane glycoprotein 99.8 3.7E-20 8E-25 187.3 4.5 298 422-725 94-407 (873)
7 PLN03210 Resistant to P. syrin 99.8 2.1E-18 4.6E-23 205.6 19.1 267 422-696 550-884 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 4.6E-21 1E-25 195.0 -3.9 266 422-694 95-375 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.2E-19 2.6E-24 183.7 3.6 278 403-695 125-430 (873)
10 KOG0444 Cytoskeletal regulator 99.8 3.1E-20 6.7E-25 189.0 -3.2 247 425-689 73-324 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 9.9E-20 2.2E-24 176.3 -4.9 263 422-694 152-541 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 9.7E-19 2.1E-23 169.6 -7.1 253 420-694 58-310 (565)
13 PRK04841 transcriptional regul 99.6 1.1E-13 2.4E-18 164.4 25.0 302 42-393 7-333 (903)
14 PRK00411 cdc6 cell division co 99.5 3.4E-12 7.4E-17 136.0 27.8 311 38-366 19-358 (394)
15 cd00116 LRR_RI Leucine-rich re 99.5 2.7E-15 5.8E-20 155.7 0.1 262 424-692 17-318 (319)
16 PRK15370 E3 ubiquitin-protein 99.5 8.3E-14 1.8E-18 155.3 10.7 226 430-694 199-428 (754)
17 COG3899 Predicted ATPase [Gene 99.5 2E-12 4.3E-17 147.3 21.0 317 50-391 1-385 (849)
18 TIGR02928 orc1/cdc6 family rep 99.4 1.2E-11 2.6E-16 130.4 22.9 312 42-367 8-351 (365)
19 COG2909 MalT ATP-dependent tra 99.4 1.3E-11 2.7E-16 132.8 22.6 311 39-395 9-341 (894)
20 PRK15387 E3 ubiquitin-protein 99.4 9.3E-13 2E-17 146.0 13.8 216 430-693 242-457 (788)
21 PF01637 Arch_ATPase: Archaeal 99.4 8.5E-13 1.8E-17 130.2 10.4 199 51-260 1-234 (234)
22 KOG0617 Ras suppressor protein 99.4 7.8E-15 1.7E-19 126.0 -3.6 148 420-570 46-194 (264)
23 KOG0618 Serine/threonine phosp 99.4 1.9E-14 4.2E-19 154.3 -1.7 254 426-691 41-320 (1081)
24 KOG0618 Serine/threonine phosp 99.4 3.6E-14 7.8E-19 152.3 0.2 243 430-694 219-489 (1081)
25 KOG0617 Ras suppressor protein 99.4 9E-15 2E-19 125.7 -5.0 151 428-582 31-183 (264)
26 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 145.1 11.0 223 430-693 178-400 (754)
27 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.7E-19 149.6 -4.5 276 435-720 3-317 (319)
28 PRK15387 E3 ubiquitin-protein 99.4 6.5E-12 1.4E-16 139.4 14.6 244 422-724 216-459 (788)
29 TIGR03015 pepcterm_ATPase puta 99.3 2E-10 4.3E-15 115.6 22.2 184 76-264 43-242 (269)
30 PRK00080 ruvB Holliday junctio 99.3 7.3E-11 1.6E-15 121.6 17.2 270 44-366 20-310 (328)
31 TIGR00635 ruvB Holliday juncti 99.3 1E-10 2.2E-15 119.8 17.6 264 49-366 4-289 (305)
32 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.9E-18 134.2 -3.9 261 431-694 68-359 (498)
33 PTZ00112 origin recognition co 99.3 7.5E-10 1.6E-14 120.2 23.5 312 46-366 752-1086(1164)
34 PF05729 NACHT: NACHT domain 99.3 6.2E-11 1.3E-15 109.9 12.6 146 77-228 1-163 (166)
35 KOG4237 Extracellular matrix p 99.1 1.2E-11 2.7E-16 120.7 -0.8 277 433-720 49-356 (498)
36 COG1474 CDC6 Cdc6-related prot 99.1 1.3E-07 2.8E-12 97.3 27.6 304 46-367 14-335 (366)
37 KOG3207 Beta-tubulin folding c 99.0 3.4E-11 7.3E-16 119.4 0.2 108 427-534 118-232 (505)
38 COG2256 MGS1 ATPase related to 99.0 4.1E-09 8.9E-14 104.4 13.3 179 45-255 20-207 (436)
39 KOG4341 F-box protein containi 99.0 9.2E-12 2E-16 122.6 -5.4 300 403-718 138-457 (483)
40 PRK14961 DNA polymerase III su 99.0 3.1E-08 6.7E-13 103.3 19.6 196 46-259 13-219 (363)
41 PRK13342 recombination factor 99.0 1.3E-08 2.8E-13 108.2 16.2 184 46-262 9-198 (413)
42 PF05496 RuvB_N: Holliday junc 98.9 1.3E-08 2.9E-13 94.2 13.3 192 42-266 17-227 (233)
43 PRK07003 DNA polymerase III su 98.9 4.7E-08 1E-12 106.2 19.5 202 47-264 14-225 (830)
44 TIGR03420 DnaA_homol_Hda DnaA 98.9 2.2E-08 4.7E-13 97.9 15.7 175 54-264 22-205 (226)
45 PRK14960 DNA polymerase III su 98.9 7.1E-08 1.5E-12 103.7 20.5 197 46-258 12-217 (702)
46 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3E-15 115.0 0.0 209 450-670 118-339 (505)
47 PRK04195 replication factor C 98.9 1.3E-07 2.9E-12 102.6 23.0 257 45-339 10-271 (482)
48 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3.1E-15 111.9 -0.4 160 422-582 22-223 (382)
49 KOG1909 Ran GTPase-activating 98.9 2E-10 4.3E-15 110.9 0.5 235 403-669 30-310 (382)
50 PF13191 AAA_16: AAA ATPase do 98.9 3.1E-09 6.7E-14 100.4 8.1 63 50-117 1-63 (185)
51 PRK12402 replication factor C 98.9 5.1E-08 1.1E-12 101.7 17.5 205 47-262 13-228 (337)
52 PF13401 AAA_22: AAA domain; P 98.9 5.1E-09 1.1E-13 92.6 8.3 118 75-194 3-125 (131)
53 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.2E-15 119.7 -3.7 190 456-691 78-270 (722)
54 PRK14949 DNA polymerase III su 98.9 7.2E-08 1.6E-12 106.9 17.5 188 46-260 13-220 (944)
55 PRK00440 rfc replication facto 98.9 2.6E-07 5.6E-12 95.7 20.9 190 44-261 12-204 (319)
56 PRK08691 DNA polymerase III su 98.9 2.8E-07 6.2E-12 100.1 21.3 184 46-260 13-220 (709)
57 PRK06893 DNA replication initi 98.8 1.5E-07 3.2E-12 91.4 16.9 156 76-264 39-207 (229)
58 PRK12323 DNA polymerase III su 98.8 1.6E-07 3.4E-12 100.8 17.8 199 47-259 14-224 (700)
59 PRK14957 DNA polymerase III su 98.8 1.9E-07 4.2E-12 100.4 18.4 188 47-262 14-223 (546)
60 PRK14964 DNA polymerase III su 98.8 2.6E-07 5.7E-12 97.9 19.0 186 46-258 10-215 (491)
61 KOG4341 F-box protein containi 98.8 2.3E-10 4.9E-15 113.0 -3.7 258 431-697 139-417 (483)
62 PLN03025 replication factor C 98.8 1.9E-07 4.2E-12 95.8 17.5 189 45-260 9-200 (319)
63 PRK07471 DNA polymerase III su 98.8 1.6E-07 3.4E-12 96.9 16.5 204 44-261 14-239 (365)
64 PRK14963 DNA polymerase III su 98.8 2.1E-07 4.6E-12 100.1 18.0 198 47-258 12-215 (504)
65 PRK14956 DNA polymerase III su 98.8 1.1E-07 2.3E-12 99.5 15.1 200 45-257 14-219 (484)
66 KOG4658 Apoptotic ATPase [Sign 98.8 2.2E-09 4.7E-14 122.3 2.8 127 430-557 523-651 (889)
67 PTZ00202 tuzin; Provisional 98.8 3.6E-07 7.8E-12 92.5 17.8 172 42-228 255-434 (550)
68 KOG2028 ATPase related to the 98.8 9.8E-08 2.1E-12 92.8 13.3 178 49-254 138-330 (554)
69 PRK09112 DNA polymerase III su 98.8 2.1E-07 4.6E-12 95.4 16.5 202 44-261 18-241 (351)
70 PRK05896 DNA polymerase III su 98.8 3.1E-07 6.7E-12 98.9 18.2 200 45-261 12-222 (605)
71 PRK14962 DNA polymerase III su 98.8 3.1E-07 6.8E-12 97.9 18.1 193 45-264 10-223 (472)
72 PRK14958 DNA polymerase III su 98.8 2.7E-07 5.9E-12 99.5 17.4 186 47-259 14-219 (509)
73 PRK07994 DNA polymerase III su 98.8 2.2E-07 4.8E-12 101.5 16.8 198 46-260 13-220 (647)
74 TIGR02397 dnaX_nterm DNA polym 98.7 7.2E-07 1.6E-11 93.8 20.2 190 45-262 10-220 (355)
75 PRK08727 hypothetical protein; 98.7 6.3E-07 1.4E-11 87.2 18.1 155 76-260 41-204 (233)
76 PRK06645 DNA polymerase III su 98.7 6.2E-07 1.4E-11 96.0 19.2 199 45-257 17-226 (507)
77 PRK14951 DNA polymerase III su 98.7 3.9E-07 8.5E-12 99.4 17.8 200 47-260 14-225 (618)
78 TIGR00678 holB DNA polymerase 98.7 4.9E-07 1.1E-11 85.2 16.3 164 60-255 3-186 (188)
79 cd00009 AAA The AAA+ (ATPases 98.7 1.5E-07 3.2E-12 85.2 12.3 124 52-195 1-130 (151)
80 PRK14969 DNA polymerase III su 98.7 6E-07 1.3E-11 97.6 18.8 187 47-260 14-221 (527)
81 PRK08903 DnaA regulatory inact 98.7 4.3E-07 9.3E-12 88.6 15.9 177 49-264 18-203 (227)
82 KOG2120 SCF ubiquitin ligase, 98.7 3.1E-10 6.7E-15 106.9 -6.1 180 477-668 185-374 (419)
83 PRK05564 DNA polymerase III su 98.7 4.2E-07 9.2E-12 93.1 16.3 181 49-259 4-189 (313)
84 KOG0532 Leucine-rich repeat (L 98.7 5.5E-10 1.2E-14 114.4 -5.2 134 422-560 113-246 (722)
85 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 3E-13 92.4 4.4 125 427-555 16-147 (175)
86 PF13173 AAA_14: AAA domain 98.7 7.9E-08 1.7E-12 84.1 9.0 121 77-219 3-126 (128)
87 PRK14955 DNA polymerase III su 98.7 7.6E-07 1.7E-11 94.0 17.9 204 47-260 14-228 (397)
88 PRK07940 DNA polymerase III su 98.7 7.4E-07 1.6E-11 92.8 17.2 194 49-260 5-213 (394)
89 PRK13341 recombination factor 98.7 6.2E-07 1.3E-11 100.3 17.7 181 45-258 24-215 (725)
90 PRK09111 DNA polymerase III su 98.6 9.6E-07 2.1E-11 96.7 17.8 203 45-261 20-234 (598)
91 PF05621 TniB: Bacterial TniB 98.6 1.4E-06 3.1E-11 84.9 16.5 207 49-258 34-259 (302)
92 COG2255 RuvB Holliday junction 98.6 1.7E-06 3.7E-11 82.0 16.3 191 42-265 19-228 (332)
93 KOG2120 SCF ubiquitin ligase, 98.6 9.1E-10 2E-14 103.8 -5.6 181 502-691 186-373 (419)
94 KOG2982 Uncharacterized conser 98.6 8E-09 1.7E-13 97.6 0.6 212 500-724 70-291 (418)
95 PRK08084 DNA replication initi 98.6 1.5E-06 3.3E-11 84.6 16.4 180 49-264 23-213 (235)
96 PRK14952 DNA polymerase III su 98.6 2.4E-06 5.3E-11 93.0 19.5 202 46-264 10-224 (584)
97 KOG0989 Replication factor C, 98.6 7.2E-07 1.6E-11 85.4 13.3 194 45-264 32-234 (346)
98 PRK07133 DNA polymerase III su 98.6 1.8E-06 4E-11 95.0 18.4 192 47-258 16-217 (725)
99 PRK14970 DNA polymerase III su 98.6 2.1E-06 4.6E-11 90.3 18.3 187 46-259 14-208 (367)
100 PRK14953 DNA polymerase III su 98.6 3.2E-06 6.9E-11 90.8 19.7 187 47-261 14-221 (486)
101 COG3903 Predicted ATPase [Gene 98.6 3.3E-07 7.2E-12 91.8 10.7 293 75-394 13-316 (414)
102 KOG1259 Nischarin, modulator o 98.6 2.6E-08 5.6E-13 94.2 2.5 62 424-486 176-246 (490)
103 PRK14959 DNA polymerase III su 98.6 2.4E-06 5.3E-11 92.6 17.6 200 47-264 14-225 (624)
104 PRK08451 DNA polymerase III su 98.6 4.1E-06 8.8E-11 89.8 19.1 185 46-261 11-219 (535)
105 PRK09087 hypothetical protein; 98.5 3.2E-06 6.9E-11 81.5 16.1 148 76-264 44-199 (226)
106 PF00308 Bac_DnaA: Bacterial d 98.5 2.5E-06 5.4E-11 81.9 15.2 192 51-264 11-212 (219)
107 PRK14087 dnaA chromosomal repl 98.5 3.9E-06 8.5E-11 89.5 18.0 174 76-264 141-323 (450)
108 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 101.5 6.3 183 426-625 112-295 (394)
109 PRK06305 DNA polymerase III su 98.5 4.4E-06 9.5E-11 89.2 18.2 186 46-258 14-220 (451)
110 PRK14950 DNA polymerase III su 98.5 5.4E-06 1.2E-10 91.9 19.6 200 47-262 14-223 (585)
111 TIGR01242 26Sp45 26S proteasom 98.5 6E-07 1.3E-11 94.0 11.3 184 46-253 119-327 (364)
112 PRK07764 DNA polymerase III su 98.5 3.7E-06 8.1E-11 95.4 17.7 193 48-257 14-218 (824)
113 PRK14954 DNA polymerase III su 98.5 6.6E-06 1.4E-10 90.3 19.1 201 47-257 14-225 (620)
114 KOG1259 Nischarin, modulator o 98.5 4.7E-08 1E-12 92.5 1.7 203 425-671 209-413 (490)
115 PRK03992 proteasome-activating 98.5 1E-06 2.2E-11 92.5 11.8 182 47-252 129-335 (389)
116 PRK05642 DNA replication initi 98.5 1.1E-05 2.3E-10 78.6 18.0 159 76-264 45-212 (234)
117 KOG2227 Pre-initiation complex 98.5 3.6E-06 7.9E-11 85.3 14.6 217 46-264 147-376 (529)
118 COG3267 ExeA Type II secretory 98.5 9.2E-06 2E-10 76.3 16.2 185 75-264 50-249 (269)
119 PRK14948 DNA polymerase III su 98.5 1E-05 2.2E-10 89.5 19.5 201 46-261 13-223 (620)
120 COG4886 Leucine-rich repeat (L 98.5 1.3E-07 2.9E-12 100.9 4.7 195 434-648 97-292 (394)
121 PRK14971 DNA polymerase III su 98.4 1.2E-05 2.5E-10 89.0 19.7 184 47-258 15-220 (614)
122 PF14516 AAA_35: AAA-like doma 98.4 1.3E-05 2.9E-10 82.3 18.7 206 45-266 7-245 (331)
123 PHA02544 44 clamp loader, smal 98.4 7.1E-06 1.5E-10 84.6 16.1 155 43-226 15-171 (316)
124 PRK06647 DNA polymerase III su 98.4 1.5E-05 3.3E-10 87.0 19.1 195 47-258 14-218 (563)
125 PRK05563 DNA polymerase III su 98.4 2E-05 4.3E-10 86.5 19.9 197 45-258 12-218 (559)
126 PRK14965 DNA polymerase III su 98.4 1.3E-05 2.7E-10 88.5 18.4 189 46-262 13-223 (576)
127 PF05673 DUF815: Protein of un 98.4 1.9E-05 4.1E-10 74.6 16.7 130 42-198 20-154 (249)
128 TIGR03345 VI_ClpV1 type VI sec 98.4 3E-06 6.6E-11 97.4 13.8 188 46-254 184-390 (852)
129 TIGR02903 spore_lon_C ATP-depe 98.4 8E-06 1.7E-10 90.7 16.5 49 45-99 150-198 (615)
130 PF14580 LRR_9: Leucine-rich r 98.4 1.5E-07 3.4E-12 85.6 2.4 138 438-581 5-149 (175)
131 TIGR02639 ClpA ATP-dependent C 98.3 6.9E-06 1.5E-10 93.8 14.5 158 49-228 182-358 (731)
132 CHL00181 cbbX CbbX; Provisiona 98.3 5.6E-05 1.2E-09 75.7 19.2 166 50-231 24-212 (287)
133 KOG2543 Origin recognition com 98.3 1.8E-05 3.9E-10 78.3 15.1 171 48-227 5-192 (438)
134 PRK06620 hypothetical protein; 98.3 2.2E-05 4.8E-10 75.0 15.6 143 77-262 45-191 (214)
135 TIGR02881 spore_V_K stage V sp 98.3 1.9E-05 4.1E-10 78.6 15.6 165 50-230 7-193 (261)
136 TIGR02880 cbbX_cfxQ probable R 98.3 4.9E-05 1.1E-09 76.2 18.3 165 50-230 23-210 (284)
137 PLN03150 hypothetical protein; 98.3 1.2E-06 2.5E-11 98.2 7.1 106 455-560 420-527 (623)
138 PRK00149 dnaA chromosomal repl 98.3 4.8E-05 1E-09 82.1 19.3 164 75-261 147-323 (450)
139 PLN03150 hypothetical protein; 98.3 1.3E-06 2.9E-11 97.7 7.3 107 478-584 419-527 (623)
140 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.3E-11 64.5 4.2 60 633-692 1-60 (61)
141 PRK14088 dnaA chromosomal repl 98.2 0.00014 3.1E-09 77.6 20.2 164 76-261 130-306 (440)
142 TIGR00362 DnaA chromosomal rep 98.2 7.3E-05 1.6E-09 79.7 17.9 165 76-261 136-311 (405)
143 CHL00095 clpC Clp protease ATP 98.2 8.2E-06 1.8E-10 94.4 11.3 159 49-227 179-353 (821)
144 PTZ00361 26 proteosome regulat 98.2 6.6E-06 1.4E-10 86.5 9.4 162 49-230 183-369 (438)
145 PRK14086 dnaA chromosomal repl 98.2 0.00013 2.9E-09 79.0 19.3 163 77-262 315-490 (617)
146 PRK05707 DNA polymerase III su 98.2 4.4E-05 9.6E-10 77.8 14.9 172 74-260 20-203 (328)
147 PRK11034 clpA ATP-dependent Cl 98.1 2.2E-05 4.8E-10 88.5 13.4 160 49-228 186-362 (758)
148 PRK12422 chromosomal replicati 98.1 0.00021 4.6E-09 76.1 19.9 156 76-254 141-307 (445)
149 cd01128 rho_factor Transcripti 98.1 3.6E-06 7.7E-11 81.8 6.0 89 77-166 17-114 (249)
150 PTZ00454 26S protease regulato 98.1 2.4E-05 5.2E-10 81.8 12.3 189 48-260 144-358 (398)
151 PRK07399 DNA polymerase III su 98.1 0.00019 4.1E-09 72.8 18.3 197 49-260 4-221 (314)
152 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.6E-11 62.3 4.6 59 430-488 1-60 (61)
153 PRK10536 hypothetical protein; 98.1 5.8E-05 1.3E-09 72.4 13.4 134 46-194 52-212 (262)
154 KOG0733 Nuclear AAA ATPase (VC 98.1 6.8E-05 1.5E-09 78.6 14.7 182 48-253 189-395 (802)
155 TIGR03346 chaperone_ClpB ATP-d 98.1 3.2E-05 7E-10 89.8 13.7 160 49-228 173-349 (852)
156 PF10443 RNA12: RNA12 protein; 98.1 0.0004 8.7E-09 71.2 19.4 204 54-270 1-288 (431)
157 TIGR03689 pup_AAA proteasome A 98.1 2.1E-05 4.6E-10 84.0 10.7 172 47-228 180-378 (512)
158 PRK15386 type III secretion pr 98.0 2.3E-05 5E-10 80.4 10.0 136 499-667 50-187 (426)
159 PF00004 AAA: ATPase family as 98.0 1.2E-05 2.5E-10 71.0 7.0 96 79-194 1-111 (132)
160 PRK08769 DNA polymerase III su 98.0 0.00032 7E-09 70.8 17.7 177 56-261 11-209 (319)
161 TIGR00602 rad24 checkpoint pro 98.0 4.9E-05 1.1E-09 83.5 12.3 57 42-99 77-133 (637)
162 PRK11331 5-methylcytosine-spec 98.0 2.7E-05 5.8E-10 80.9 9.4 119 49-179 175-297 (459)
163 PRK09376 rho transcription ter 98.0 1.7E-05 3.8E-10 80.3 7.8 101 60-166 158-267 (416)
164 COG1223 Predicted ATPase (AAA+ 98.0 0.00013 2.8E-09 68.3 12.7 162 48-230 120-299 (368)
165 KOG1514 Origin recognition com 98.0 0.00023 4.9E-09 76.2 15.9 213 46-264 393-625 (767)
166 CHL00176 ftsH cell division pr 98.0 0.00023 5E-09 78.9 16.8 188 47-258 181-393 (638)
167 PRK10865 protein disaggregatio 98.0 9.5E-05 2.1E-09 85.6 14.4 161 48-228 177-354 (857)
168 PRK08058 DNA polymerase III su 97.9 0.00024 5.3E-09 73.0 15.3 162 51-226 7-180 (329)
169 COG1222 RPT1 ATP-dependent 26S 97.9 0.00015 3.2E-09 71.5 12.6 179 50-253 152-356 (406)
170 smart00382 AAA ATPases associa 97.9 9.6E-05 2.1E-09 66.0 10.0 89 77-169 3-92 (148)
171 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00032 7E-09 81.0 16.4 137 48-194 565-718 (852)
172 PRK06871 DNA polymerase III su 97.9 0.00097 2.1E-08 67.5 17.9 178 58-257 11-200 (325)
173 KOG0991 Replication factor C, 97.9 8.4E-05 1.8E-09 68.3 9.0 153 44-229 22-186 (333)
174 KOG0531 Protein phosphatase 1, 97.8 4.5E-06 9.8E-11 89.3 0.7 105 426-534 91-196 (414)
175 PF13177 DNA_pol3_delta2: DNA 97.8 0.0003 6.5E-09 64.0 12.4 122 53-196 1-143 (162)
176 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 75.8 10.0 138 425-582 47-187 (426)
177 PRK07993 DNA polymerase III su 97.8 0.0011 2.4E-08 67.9 17.6 180 57-258 10-202 (334)
178 TIGR01241 FtsH_fam ATP-depende 97.8 0.00022 4.7E-09 78.1 13.3 192 45-260 51-267 (495)
179 TIGR00767 rho transcription te 97.8 7.4E-05 1.6E-09 76.3 8.8 90 77-167 169-267 (415)
180 COG0593 DnaA ATPase involved i 97.8 0.0022 4.9E-08 66.2 19.6 138 75-233 112-262 (408)
181 PLN00020 ribulose bisphosphate 97.8 0.00033 7.2E-09 70.3 12.7 156 74-255 146-333 (413)
182 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00039 8.4E-09 80.9 15.4 139 48-194 564-717 (852)
183 PF07693 KAP_NTPase: KAP famil 97.8 0.0016 3.5E-08 67.5 18.6 145 54-201 1-220 (325)
184 PRK08116 hypothetical protein; 97.8 0.0002 4.3E-09 71.1 10.8 104 77-195 115-221 (268)
185 KOG2982 Uncharacterized conser 97.7 6.3E-06 1.4E-10 78.4 0.1 80 607-687 199-285 (418)
186 TIGR02902 spore_lonB ATP-depen 97.7 0.00016 3.4E-09 79.2 11.0 175 48-230 64-278 (531)
187 PRK06090 DNA polymerase III su 97.7 0.0023 5.1E-08 64.6 18.2 177 57-260 11-201 (319)
188 KOG0734 AAA+-type ATPase conta 97.7 0.00046 9.9E-09 71.3 12.9 160 49-228 304-484 (752)
189 COG2607 Predicted ATPase (AAA+ 97.7 0.00059 1.3E-08 63.5 12.4 113 42-181 53-166 (287)
190 COG2812 DnaX DNA polymerase II 97.7 8.7E-05 1.9E-09 78.8 8.1 192 48-255 15-215 (515)
191 COG0542 clpA ATP-binding subun 97.7 0.00014 3E-09 80.4 9.8 128 47-182 489-620 (786)
192 COG5238 RNA1 Ran GTPase-activa 97.7 1.1E-05 2.3E-10 75.8 1.1 135 425-560 25-197 (388)
193 TIGR00763 lon ATP-dependent pr 97.7 0.00025 5.3E-09 81.8 12.1 167 49-228 320-505 (775)
194 COG5238 RNA1 Ran GTPase-activa 97.7 2.2E-05 4.8E-10 73.8 2.8 219 421-670 49-316 (388)
195 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0013 2.8E-08 65.4 15.6 110 78-195 23-161 (262)
196 CHL00195 ycf46 Ycf46; Provisio 97.7 0.0003 6.4E-09 75.5 11.7 183 49-253 228-428 (489)
197 PRK08181 transposase; Validate 97.7 0.00025 5.5E-09 69.8 10.3 101 77-195 107-209 (269)
198 PF14532 Sigma54_activ_2: Sigm 97.7 5.1E-05 1.1E-09 67.3 4.8 108 52-195 1-110 (138)
199 KOG0531 Protein phosphatase 1, 97.7 9.4E-06 2E-10 86.8 -0.0 126 429-559 71-197 (414)
200 KOG0744 AAA+-type ATPase [Post 97.6 0.00055 1.2E-08 66.4 11.4 81 76-166 177-261 (423)
201 KOG1859 Leucine-rich repeat pr 97.6 1.6E-06 3.4E-11 92.1 -6.2 54 526-582 166-219 (1096)
202 KOG1859 Leucine-rich repeat pr 97.6 8.7E-07 1.9E-11 93.9 -8.2 127 550-696 166-294 (1096)
203 PRK04296 thymidine kinase; Pro 97.6 0.0002 4.2E-09 67.3 8.2 112 77-195 3-116 (190)
204 TIGR02639 ClpA ATP-dependent C 97.6 0.001 2.2E-08 76.4 15.4 123 48-181 453-579 (731)
205 COG1373 Predicted ATPase (AAA+ 97.6 0.0014 3.1E-08 69.0 15.0 168 53-259 21-191 (398)
206 TIGR01243 CDC48 AAA family ATP 97.6 0.00082 1.8E-08 77.4 14.3 182 48-253 452-656 (733)
207 PRK12377 putative replication 97.6 0.00018 4E-09 69.9 7.6 102 76-194 101-205 (248)
208 PRK10865 protein disaggregatio 97.6 0.00047 1E-08 80.0 12.1 126 48-181 567-696 (857)
209 PRK08939 primosomal protein Dn 97.6 0.00044 9.5E-09 69.8 10.4 122 53-194 135-260 (306)
210 KOG0730 AAA+-type ATPase [Post 97.6 0.0021 4.5E-08 68.7 15.5 185 45-253 430-636 (693)
211 PF00158 Sigma54_activat: Sigm 97.6 0.00021 4.6E-09 65.2 7.1 133 51-195 1-144 (168)
212 KOG1947 Leucine rich repeat pr 97.5 1.3E-05 2.8E-10 88.4 -1.4 244 426-698 184-444 (482)
213 KOG1947 Leucine rich repeat pr 97.5 1.1E-05 2.3E-10 89.0 -2.1 216 451-697 186-417 (482)
214 PF07728 AAA_5: AAA domain (dy 97.5 6.1E-05 1.3E-09 67.1 3.1 90 79-181 2-91 (139)
215 PF04665 Pox_A32: Poxvirus A32 97.5 0.00036 7.7E-09 66.8 8.2 34 78-113 15-48 (241)
216 TIGR01243 CDC48 AAA family ATP 97.5 0.00068 1.5E-08 78.0 12.0 183 48-254 177-381 (733)
217 PRK06964 DNA polymerase III su 97.5 0.0039 8.5E-08 63.7 16.1 93 155-260 132-225 (342)
218 COG0470 HolB ATPase involved i 97.5 0.00092 2E-08 69.3 12.0 125 50-194 2-148 (325)
219 PRK06526 transposase; Provisio 97.5 0.00034 7.4E-09 68.6 8.1 101 76-195 98-201 (254)
220 TIGR02974 phageshock_pspF psp 97.5 0.0008 1.7E-08 69.0 10.9 130 51-194 1-143 (329)
221 KOG0739 AAA+-type ATPase [Post 97.5 0.0022 4.7E-08 61.5 12.6 180 49-253 133-334 (439)
222 KOG3665 ZYG-1-like serine/thre 97.4 2.9E-05 6.4E-10 86.7 0.0 156 500-667 121-285 (699)
223 PRK07952 DNA replication prote 97.4 0.00094 2E-08 64.8 10.1 118 57-194 84-204 (244)
224 PRK13531 regulatory ATPase Rav 97.4 0.001 2.2E-08 70.0 10.9 154 50-227 21-193 (498)
225 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00028 6.2E-09 71.4 6.6 50 50-99 52-101 (361)
226 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0018 3.9E-08 68.3 12.5 159 51-229 513-693 (802)
227 PHA02244 ATPase-like protein 97.4 0.0011 2.5E-08 67.1 10.8 125 48-194 95-230 (383)
228 CHL00095 clpC Clp protease ATP 97.4 0.001 2.2E-08 77.3 12.0 138 48-195 508-662 (821)
229 PF01695 IstB_IS21: IstB-like 97.4 0.00027 6E-09 65.3 5.9 102 76-195 47-150 (178)
230 KOG2228 Origin recognition com 97.4 0.0029 6.2E-08 62.1 12.7 175 49-228 24-219 (408)
231 PRK04132 replication factor C 97.4 0.0042 9.2E-08 70.6 16.0 162 81-262 569-733 (846)
232 COG0542 clpA ATP-binding subun 97.4 0.00069 1.5E-08 75.2 9.4 160 49-228 170-346 (786)
233 KOG0652 26S proteasome regulat 97.4 0.0045 9.8E-08 58.1 13.2 50 49-98 171-227 (424)
234 PRK09183 transposase/IS protei 97.4 0.00037 7.9E-09 68.9 6.6 101 77-195 103-206 (259)
235 PRK06921 hypothetical protein; 97.4 0.0012 2.6E-08 65.4 10.1 37 76-114 117-154 (266)
236 TIGR01817 nifA Nif-specific re 97.4 0.0014 3E-08 72.7 11.8 136 46-195 193-341 (534)
237 KOG2035 Replication factor C, 97.3 0.001 2.2E-08 63.3 8.8 183 51-257 15-225 (351)
238 PF02562 PhoH: PhoH-like prote 97.3 0.00061 1.3E-08 63.7 7.2 129 54-194 5-155 (205)
239 PRK11034 clpA ATP-dependent Cl 97.3 0.0015 3.2E-08 74.1 11.6 123 48-181 457-583 (758)
240 PRK10787 DNA-binding ATP-depen 97.3 0.0015 3.3E-08 74.6 11.5 167 48-228 321-506 (784)
241 COG0466 Lon ATP-dependent Lon 97.3 0.0012 2.7E-08 71.2 9.9 169 46-228 320-508 (782)
242 PF12799 LRR_4: Leucine Rich r 97.3 0.00027 6E-09 47.9 3.3 35 430-464 1-35 (44)
243 KOG0735 AAA+-type ATPase [Post 97.3 0.0055 1.2E-07 66.0 14.2 192 46-262 405-618 (952)
244 KOG0741 AAA+-type ATPase [Post 97.3 0.0031 6.8E-08 65.3 12.1 134 74-226 536-684 (744)
245 PRK08699 DNA polymerase III su 97.2 0.0043 9.3E-08 63.3 13.0 71 156-227 114-184 (325)
246 PRK11608 pspF phage shock prot 97.2 0.00084 1.8E-08 68.9 7.8 135 49-195 6-151 (326)
247 cd01120 RecA-like_NTPases RecA 97.2 0.002 4.3E-08 59.0 9.5 39 78-118 1-39 (165)
248 cd01394 radB RadB. The archaea 97.2 0.0018 3.9E-08 62.6 9.2 42 75-118 18-59 (218)
249 PRK11889 flhF flagellar biosyn 97.2 0.0077 1.7E-07 61.6 13.8 114 75-190 240-357 (436)
250 PRK12608 transcription termina 97.2 0.0031 6.8E-08 64.2 11.1 103 57-165 119-230 (380)
251 PRK09361 radB DNA repair and r 97.2 0.0019 4E-08 62.9 9.3 39 75-115 22-60 (225)
252 PRK08118 topology modulation p 97.1 0.00075 1.6E-08 61.8 5.8 34 78-111 3-37 (167)
253 KOG0731 AAA+-type ATPase conta 97.1 0.0096 2.1E-07 65.9 15.0 188 46-256 308-520 (774)
254 PRK06835 DNA replication prote 97.1 0.0028 6.1E-08 64.5 10.3 103 77-195 184-289 (329)
255 COG0464 SpoVK ATPases of the A 97.1 0.0051 1.1E-07 67.6 13.0 161 49-229 242-424 (494)
256 TIGR02237 recomb_radB DNA repa 97.1 0.0017 3.6E-08 62.4 8.2 46 74-122 10-55 (209)
257 KOG0735 AAA+-type ATPase [Post 97.1 0.0059 1.3E-07 65.7 12.6 183 49-255 667-871 (952)
258 PRK15429 formate hydrogenlyase 97.1 0.0018 4E-08 74.0 9.8 134 49-195 376-521 (686)
259 PRK06067 flagellar accessory p 97.1 0.0029 6.3E-08 61.9 9.9 116 74-194 23-164 (234)
260 PTZ00301 uridine kinase; Provi 97.1 0.0018 3.8E-08 61.5 8.0 23 76-98 3-25 (210)
261 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.013 2.7E-07 52.5 12.9 117 78-197 4-140 (159)
262 PRK05022 anaerobic nitric oxid 97.1 0.0019 4.2E-08 70.8 9.4 135 47-195 185-332 (509)
263 KOG1051 Chaperone HSP104 and r 97.1 0.0039 8.4E-08 70.4 11.6 122 49-181 562-686 (898)
264 KOG1644 U2-associated snRNP A' 97.1 0.001 2.2E-08 60.3 5.6 13 569-581 137-149 (233)
265 PRK09354 recA recombinase A; P 97.1 0.009 2E-07 60.8 13.1 85 74-165 58-148 (349)
266 KOG1969 DNA replication checkp 97.1 0.0023 4.9E-08 69.1 9.0 87 74-180 324-412 (877)
267 PRK10820 DNA-binding transcrip 97.1 0.0063 1.4E-07 66.8 13.0 135 47-195 202-349 (520)
268 TIGR01650 PD_CobS cobaltochela 97.1 0.017 3.6E-07 58.1 14.7 113 48-178 44-157 (327)
269 KOG2170 ATPase of the AAA+ sup 97.0 0.015 3.2E-07 56.4 13.3 106 55-180 92-203 (344)
270 PF03215 Rad17: Rad17 cell cyc 97.0 0.0039 8.5E-08 67.4 10.8 54 45-99 15-68 (519)
271 COG1484 DnaC DNA replication p 97.0 0.0032 7E-08 61.8 9.3 80 76-172 105-184 (254)
272 cd01393 recA_like RecA is a b 97.0 0.0042 9.1E-08 60.5 10.1 88 75-165 18-124 (226)
273 KOG2004 Mitochondrial ATP-depe 97.0 0.0017 3.6E-08 69.9 7.5 171 46-228 408-596 (906)
274 KOG0727 26S proteasome regulat 97.0 0.017 3.6E-07 54.2 13.1 159 50-228 156-339 (408)
275 cd00544 CobU Adenosylcobinamid 97.0 0.0014 2.9E-08 59.9 6.1 79 79-164 2-82 (169)
276 PF00448 SRP54: SRP54-type pro 97.0 0.0034 7.3E-08 59.0 8.9 90 76-167 1-95 (196)
277 PF07724 AAA_2: AAA domain (Cd 97.0 0.00046 1E-08 63.2 3.0 90 76-180 3-104 (171)
278 PRK14974 cell division protein 97.0 0.008 1.7E-07 61.3 12.2 116 75-192 139-261 (336)
279 PRK05541 adenylylsulfate kinas 97.0 0.0012 2.6E-08 61.4 5.8 37 75-113 6-42 (176)
280 PRK12726 flagellar biosynthesi 97.0 0.011 2.4E-07 60.3 12.8 92 74-167 204-297 (407)
281 COG0572 Udk Uridine kinase [Nu 97.0 0.0043 9.4E-08 58.0 9.1 25 74-98 6-30 (218)
282 PRK07261 topology modulation p 97.0 0.0018 3.9E-08 59.6 6.7 65 78-165 2-67 (171)
283 PRK07132 DNA polymerase III su 96.9 0.036 7.9E-07 55.6 16.0 171 57-259 4-184 (299)
284 PTZ00494 tuzin-like protein; P 96.9 0.13 2.7E-06 53.1 19.4 173 43-228 365-544 (664)
285 cd00983 recA RecA is a bacter 96.9 0.0033 7.1E-08 63.4 8.5 85 74-165 53-143 (325)
286 TIGR02012 tigrfam_recA protein 96.9 0.0033 7.1E-08 63.3 8.5 85 74-165 53-143 (321)
287 KOG0651 26S proteasome regulat 96.9 0.0031 6.7E-08 61.1 7.6 105 74-198 164-284 (388)
288 KOG0729 26S proteasome regulat 96.9 0.011 2.4E-07 55.8 11.0 51 49-99 177-234 (435)
289 PRK10733 hflB ATP-dependent me 96.9 0.0097 2.1E-07 67.0 12.9 162 49-230 152-337 (644)
290 PRK14722 flhF flagellar biosyn 96.9 0.012 2.5E-07 60.7 12.3 90 76-167 137-227 (374)
291 PRK00771 signal recognition pa 96.9 0.018 3.8E-07 61.0 13.6 89 75-166 94-186 (437)
292 PRK05703 flhF flagellar biosyn 96.9 0.019 4.1E-07 61.0 13.8 103 76-180 221-326 (424)
293 cd03115 SRP The signal recogni 96.8 0.014 3.1E-07 54.0 11.5 88 78-167 2-94 (173)
294 PF13207 AAA_17: AAA domain; P 96.8 0.00083 1.8E-08 58.0 2.9 22 78-99 1-22 (121)
295 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.013 2.9E-07 70.6 13.4 26 74-99 1628-1653(2281)
296 cd01122 GP4d_helicase GP4d_hel 96.8 0.019 4E-07 57.7 13.1 87 76-166 30-122 (271)
297 PRK12723 flagellar biosynthesi 96.8 0.011 2.4E-07 61.5 11.6 105 75-181 173-282 (388)
298 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.005 1.1E-07 60.4 8.7 56 75-131 18-77 (235)
299 COG4608 AppF ABC-type oligopep 96.8 0.0088 1.9E-07 57.6 9.8 123 76-201 39-176 (268)
300 PRK06696 uridine kinase; Valid 96.8 0.0015 3.4E-08 63.2 4.8 44 53-99 2-45 (223)
301 cd01124 KaiC KaiC is a circadi 96.8 0.011 2.4E-07 55.6 10.5 44 79-126 2-45 (187)
302 PF12799 LRR_4: Leucine Rich r 96.8 0.0017 3.7E-08 44.0 3.5 34 454-488 2-35 (44)
303 PF10236 DAP3: Mitochondrial r 96.8 0.056 1.2E-06 54.9 16.2 50 209-258 258-307 (309)
304 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.011 2.5E-07 57.7 10.8 49 74-126 19-67 (237)
305 TIGR03499 FlhF flagellar biosy 96.8 0.0066 1.4E-07 60.9 9.1 88 75-164 193-281 (282)
306 PF13604 AAA_30: AAA domain; P 96.7 0.0029 6.4E-08 59.7 6.2 102 76-192 18-128 (196)
307 PRK12724 flagellar biosynthesi 96.7 0.0094 2E-07 61.9 10.2 100 76-179 223-325 (432)
308 COG2884 FtsE Predicted ATPase 96.7 0.022 4.8E-07 51.4 11.0 61 141-201 141-203 (223)
309 PRK05480 uridine/cytidine kina 96.7 0.011 2.4E-07 56.6 10.2 26 74-99 4-29 (209)
310 COG1126 GlnQ ABC-type polar am 96.7 0.022 4.7E-07 52.7 11.1 60 143-202 142-203 (240)
311 TIGR02238 recomb_DMC1 meiotic 96.7 0.0056 1.2E-07 62.0 8.3 57 75-132 95-155 (313)
312 KOG3665 ZYG-1-like serine/thre 96.7 0.0011 2.3E-08 74.5 3.1 149 404-555 123-282 (699)
313 PRK15455 PrkA family serine pr 96.7 0.0012 2.5E-08 70.5 3.1 49 50-98 77-125 (644)
314 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.027 5.8E-07 54.9 12.6 115 75-194 19-165 (229)
315 cd01131 PilT Pilus retraction 96.6 0.0044 9.6E-08 58.7 6.6 110 78-198 3-112 (198)
316 TIGR02329 propionate_PrpR prop 96.6 0.0081 1.7E-07 65.5 9.1 133 49-195 212-358 (526)
317 PRK04328 hypothetical protein; 96.6 0.02 4.3E-07 56.4 11.1 86 75-165 22-138 (249)
318 PRK05973 replicative DNA helic 96.6 0.019 4.2E-07 55.2 10.6 113 76-195 64-193 (237)
319 KOG0736 Peroxisome assembly fa 96.6 0.011 2.4E-07 64.3 9.7 104 44-167 667-776 (953)
320 COG4618 ArpD ABC-type protease 96.6 0.025 5.4E-07 59.0 11.8 56 145-200 480-537 (580)
321 PF08423 Rad51: Rad51; InterP 96.6 0.0067 1.5E-07 59.8 7.6 55 76-131 38-96 (256)
322 cd03214 ABC_Iron-Siderophores_ 96.6 0.019 4.1E-07 53.5 10.2 119 77-198 26-161 (180)
323 KOG0737 AAA+-type ATPase [Post 96.6 0.025 5.5E-07 56.5 11.2 186 43-254 86-296 (386)
324 TIGR00382 clpX endopeptidase C 96.5 0.025 5.4E-07 59.3 11.9 51 48-98 76-138 (413)
325 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.0081 1.8E-07 57.5 7.8 121 76-201 29-160 (213)
326 KOG0728 26S proteasome regulat 96.5 0.042 9.1E-07 51.6 11.8 157 51-227 148-330 (404)
327 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0062 1.3E-07 61.2 6.8 50 49-98 61-110 (358)
328 PRK08233 hypothetical protein; 96.5 0.0076 1.6E-07 56.4 7.0 24 76-99 3-26 (182)
329 COG0465 HflB ATP-dependent Zn 96.5 0.032 7E-07 60.5 12.4 166 43-228 144-333 (596)
330 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.016 3.4E-07 55.9 8.9 121 77-199 31-203 (254)
331 KOG4579 Leucine-rich repeat (L 96.4 0.00022 4.7E-09 60.2 -3.1 102 431-534 28-133 (177)
332 PRK08533 flagellar accessory p 96.4 0.03 6.6E-07 54.3 11.1 48 76-127 24-71 (230)
333 KOG2739 Leucine-rich acidic nu 96.4 0.0017 3.6E-08 61.6 2.2 104 452-557 42-152 (260)
334 smart00534 MUTSac ATPase domai 96.4 0.017 3.6E-07 54.1 9.0 22 78-99 1-22 (185)
335 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.016 3.4E-07 57.5 9.2 40 75-116 35-74 (259)
336 COG1419 FlhF Flagellar GTP-bin 96.4 0.042 9.1E-07 56.3 12.2 106 75-182 202-310 (407)
337 cd03238 ABC_UvrA The excision 96.4 0.027 5.8E-07 51.9 10.0 113 76-198 21-152 (176)
338 PF01583 APS_kinase: Adenylyls 96.4 0.0055 1.2E-07 54.5 5.2 36 76-113 2-37 (156)
339 PRK15424 propionate catabolism 96.4 0.014 3E-07 63.6 9.2 133 49-194 219-372 (538)
340 PLN03187 meiotic recombination 96.4 0.025 5.4E-07 57.9 10.4 57 75-132 125-185 (344)
341 COG1618 Predicted nucleotide k 96.4 0.0034 7.4E-08 54.8 3.5 24 76-99 5-28 (179)
342 COG1124 DppF ABC-type dipeptid 96.4 0.048 1E-06 51.5 11.2 56 146-201 150-208 (252)
343 TIGR00064 ftsY signal recognit 96.3 0.022 4.8E-07 56.6 9.7 92 74-167 70-166 (272)
344 cd03283 ABC_MutS-like MutS-lik 96.3 0.025 5.4E-07 53.5 9.7 22 77-98 26-47 (199)
345 PRK10867 signal recognition pa 96.3 0.044 9.5E-07 58.0 12.3 91 74-166 98-194 (433)
346 cd01133 F1-ATPase_beta F1 ATP 96.3 0.011 2.3E-07 58.0 7.2 51 77-129 70-122 (274)
347 PF03308 ArgK: ArgK protein; 96.3 0.0069 1.5E-07 58.0 5.7 53 57-113 14-66 (266)
348 PRK05800 cobU adenosylcobinami 96.3 0.013 2.8E-07 53.7 7.4 80 78-164 3-85 (170)
349 KOG3347 Predicted nucleotide k 96.3 0.0045 9.8E-08 53.1 4.0 73 77-159 8-80 (176)
350 PRK09270 nucleoside triphospha 96.3 0.016 3.5E-07 56.3 8.5 25 74-98 31-55 (229)
351 TIGR00390 hslU ATP-dependent p 96.3 0.01 2.3E-07 61.3 7.3 51 48-98 11-69 (441)
352 PRK05342 clpX ATP-dependent pr 96.3 0.016 3.5E-07 61.0 8.9 51 48-98 70-130 (412)
353 COG4088 Predicted nucleotide k 96.3 0.056 1.2E-06 49.4 10.9 22 77-98 2-23 (261)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.04 8.7E-07 49.1 10.2 102 77-198 27-130 (144)
355 PRK11388 DNA-binding transcrip 96.3 0.01 2.2E-07 67.5 7.9 133 48-195 324-467 (638)
356 KOG0726 26S proteasome regulat 96.3 0.051 1.1E-06 52.3 11.1 51 49-99 185-242 (440)
357 cd03230 ABC_DR_subfamily_A Thi 96.3 0.02 4.4E-07 52.9 8.6 117 77-199 27-159 (173)
358 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.022 4.8E-07 54.0 8.9 120 76-202 29-158 (204)
359 COG0714 MoxR-like ATPases [Gen 96.3 0.0091 2E-07 61.7 6.9 110 49-181 24-138 (329)
360 KOG1970 Checkpoint RAD17-RFC c 96.3 0.094 2E-06 55.3 13.9 45 54-98 87-132 (634)
361 PLN03186 DNA repair protein RA 96.3 0.025 5.5E-07 57.9 9.9 56 75-131 122-181 (342)
362 COG1875 NYN ribonuclease and A 96.3 0.029 6.4E-07 55.9 9.8 129 54-194 229-387 (436)
363 KOG0742 AAA+-type ATPase [Post 96.3 0.022 4.7E-07 57.4 9.0 26 74-99 382-407 (630)
364 PRK12727 flagellar biosynthesi 96.3 0.024 5.3E-07 60.5 9.9 90 75-166 349-439 (559)
365 cd03247 ABCC_cytochrome_bd The 96.3 0.02 4.3E-07 53.3 8.5 116 77-198 29-160 (178)
366 COG1066 Sms Predicted ATP-depe 96.3 0.013 2.9E-07 59.3 7.5 83 75-166 92-179 (456)
367 KOG4579 Leucine-rich repeat (L 96.3 0.00059 1.3E-08 57.7 -1.6 92 424-517 47-139 (177)
368 KOG0743 AAA+-type ATPase [Post 96.2 0.076 1.6E-06 54.9 12.9 153 77-264 236-413 (457)
369 COG1136 SalX ABC-type antimicr 96.2 0.063 1.4E-06 51.0 11.5 59 143-201 148-209 (226)
370 cd03216 ABC_Carb_Monos_I This 96.2 0.02 4.3E-07 52.3 8.1 114 77-198 27-145 (163)
371 cd00984 DnaB_C DnaB helicase C 96.2 0.057 1.2E-06 53.1 12.0 40 76-116 13-52 (242)
372 COG0468 RecA RecA/RadA recombi 96.2 0.02 4.4E-07 56.4 8.5 89 74-165 58-151 (279)
373 KOG1644 U2-associated snRNP A' 96.2 0.007 1.5E-07 55.1 4.8 101 455-557 44-149 (233)
374 cd03228 ABCC_MRP_Like The MRP 96.2 0.034 7.3E-07 51.3 9.5 118 76-199 28-159 (171)
375 TIGR02236 recomb_radA DNA repa 96.2 0.027 5.9E-07 57.6 9.7 56 75-131 94-153 (310)
376 PF00485 PRK: Phosphoribulokin 96.2 0.017 3.8E-07 54.5 7.6 22 78-99 1-22 (194)
377 TIGR02655 circ_KaiC circadian 96.2 0.032 6.9E-07 60.8 10.6 62 58-127 249-310 (484)
378 TIGR00959 ffh signal recogniti 96.2 0.049 1.1E-06 57.6 11.6 91 75-166 98-193 (428)
379 KOG0738 AAA+-type ATPase [Post 96.2 0.048 1.1E-06 54.8 10.7 51 49-99 212-268 (491)
380 PTZ00035 Rad51 protein; Provis 96.2 0.04 8.8E-07 56.6 10.7 68 59-131 105-176 (337)
381 PRK10923 glnG nitrogen regulat 96.1 0.022 4.8E-07 62.4 9.5 133 49-195 138-283 (469)
382 TIGR02239 recomb_RAD51 DNA rep 96.1 0.026 5.5E-07 57.5 9.2 68 59-131 83-154 (316)
383 PF13238 AAA_18: AAA domain; P 96.1 0.0036 7.9E-08 54.6 2.7 21 79-99 1-21 (129)
384 KOG0730 AAA+-type ATPase [Post 96.1 0.055 1.2E-06 58.3 11.7 182 49-254 184-386 (693)
385 PRK05439 pantothenate kinase; 96.1 0.042 9.1E-07 55.2 10.3 79 74-156 84-166 (311)
386 PRK07667 uridine kinase; Provi 96.1 0.014 3E-07 55.1 6.6 37 59-99 4-40 (193)
387 COG5635 Predicted NTPase (NACH 96.1 0.0096 2.1E-07 69.4 6.6 183 76-265 222-427 (824)
388 TIGR00708 cobA cob(I)alamin ad 96.1 0.05 1.1E-06 49.3 9.7 119 77-197 6-142 (173)
389 cd01121 Sms Sms (bacterial rad 96.1 0.025 5.4E-07 58.8 8.9 40 75-116 81-120 (372)
390 PF06309 Torsin: Torsin; Inte 96.1 0.036 7.9E-07 46.9 8.1 50 49-101 25-78 (127)
391 cd03223 ABCD_peroxisomal_ALDP 96.1 0.06 1.3E-06 49.3 10.5 115 77-197 28-150 (166)
392 PRK05201 hslU ATP-dependent pr 96.1 0.013 2.8E-07 60.6 6.6 51 48-98 14-72 (443)
393 PRK06731 flhF flagellar biosyn 96.1 0.074 1.6E-06 52.5 11.7 113 76-190 75-191 (270)
394 PF06745 KaiC: KaiC; InterPro 96.1 0.017 3.6E-07 56.2 7.2 85 75-164 18-124 (226)
395 COG1703 ArgK Putative periplas 96.1 0.0087 1.9E-07 58.1 4.9 67 59-129 38-104 (323)
396 PF13479 AAA_24: AAA domain 96.1 0.022 4.7E-07 54.7 7.8 32 76-117 3-34 (213)
397 TIGR01818 ntrC nitrogen regula 96.1 0.042 9.2E-07 60.0 11.1 135 49-195 134-279 (463)
398 TIGR00150 HI0065_YjeE ATPase, 96.0 0.0085 1.8E-07 51.8 4.4 40 56-99 6-45 (133)
399 cd03246 ABCC_Protease_Secretio 96.0 0.031 6.8E-07 51.6 8.6 115 77-198 29-159 (173)
400 cd02025 PanK Pantothenate kina 96.0 0.026 5.7E-07 54.2 8.3 22 78-99 1-22 (220)
401 PRK13695 putative NTPase; Prov 96.0 0.011 2.3E-07 54.9 5.4 22 78-99 2-23 (174)
402 PRK06547 hypothetical protein; 96.0 0.009 2E-07 54.8 4.7 26 74-99 13-38 (172)
403 PRK04301 radA DNA repair and r 96.0 0.039 8.5E-07 56.6 9.9 56 75-131 101-160 (317)
404 COG0563 Adk Adenylate kinase a 96.0 0.0096 2.1E-07 54.9 4.7 22 78-99 2-23 (178)
405 cd01125 repA Hexameric Replica 96.0 0.052 1.1E-06 53.2 10.2 22 78-99 3-24 (239)
406 cd03222 ABC_RNaseL_inhibitor T 96.0 0.059 1.3E-06 49.7 9.9 107 77-199 26-136 (177)
407 cd02019 NK Nucleoside/nucleoti 95.9 0.0055 1.2E-07 46.5 2.4 22 78-99 1-22 (69)
408 PRK05917 DNA polymerase III su 95.9 0.13 2.8E-06 51.1 12.5 118 57-195 5-135 (290)
409 PF03969 AFG1_ATPase: AFG1-lik 95.9 0.021 4.6E-07 59.0 7.4 107 74-194 60-167 (362)
410 TIGR03880 KaiC_arch_3 KaiC dom 95.9 0.058 1.3E-06 52.3 10.1 40 75-116 15-54 (224)
411 PF13671 AAA_33: AAA domain; P 95.9 0.0065 1.4E-07 54.2 3.2 21 78-98 1-21 (143)
412 PF13481 AAA_25: AAA domain; P 95.9 0.048 1E-06 51.5 9.2 40 78-117 34-81 (193)
413 COG2842 Uncharacterized ATPase 95.9 0.096 2.1E-06 51.1 11.0 130 39-181 62-191 (297)
414 PRK07276 DNA polymerase III su 95.9 0.44 9.6E-06 47.5 16.1 70 154-226 103-173 (290)
415 PRK09519 recA DNA recombinatio 95.9 0.11 2.3E-06 58.7 13.1 97 59-165 46-148 (790)
416 KOG2739 Leucine-rich acidic nu 95.8 0.0025 5.3E-08 60.5 0.3 107 426-534 39-153 (260)
417 PF00154 RecA: recA bacterial 95.8 0.017 3.7E-07 58.1 6.2 85 75-166 52-142 (322)
418 cd02027 APSK Adenosine 5'-phos 95.8 0.022 4.8E-07 51.0 6.4 22 78-99 1-22 (149)
419 PHA00729 NTP-binding motif con 95.8 0.012 2.7E-07 55.7 4.9 25 75-99 16-40 (226)
420 COG1120 FepC ABC-type cobalami 95.8 0.081 1.7E-06 51.4 10.5 124 76-200 28-204 (258)
421 TIGR00554 panK_bact pantothena 95.8 0.051 1.1E-06 54.2 9.4 25 74-98 60-84 (290)
422 cd03229 ABC_Class3 This class 95.8 0.038 8.1E-07 51.4 8.1 120 77-199 27-165 (178)
423 cd03284 ABC_MutS1 MutS1 homolo 95.8 0.024 5.2E-07 54.4 6.9 22 77-98 31-52 (216)
424 PRK14723 flhF flagellar biosyn 95.8 0.15 3.2E-06 57.5 13.8 89 76-166 185-274 (767)
425 PRK00889 adenylylsulfate kinas 95.8 0.023 4.9E-07 52.7 6.6 25 75-99 3-27 (175)
426 PF00910 RNA_helicase: RNA hel 95.8 0.0057 1.2E-07 51.3 2.1 21 79-99 1-21 (107)
427 PRK06762 hypothetical protein; 95.7 0.0078 1.7E-07 55.3 3.1 24 76-99 2-25 (166)
428 PF07726 AAA_3: ATPase family 95.7 0.0043 9.3E-08 52.6 1.2 26 79-106 2-27 (131)
429 TIGR02915 PEP_resp_reg putativ 95.7 0.029 6.3E-07 60.9 8.1 133 49-195 139-284 (445)
430 KOG0736 Peroxisome assembly fa 95.7 0.24 5.2E-06 54.5 14.3 178 52-254 404-598 (953)
431 PF13245 AAA_19: Part of AAA d 95.7 0.02 4.3E-07 44.3 4.7 23 77-99 11-33 (76)
432 PF12775 AAA_7: P-loop contain 95.7 0.0036 7.8E-08 62.2 0.7 139 76-228 33-193 (272)
433 PRK13765 ATP-dependent proteas 95.7 0.015 3.2E-07 64.6 5.4 77 46-132 28-104 (637)
434 COG1643 HrpA HrpA-like helicas 95.7 0.091 2E-06 59.9 11.6 133 55-199 52-209 (845)
435 PRK14527 adenylate kinase; Pro 95.7 0.012 2.5E-07 55.6 4.0 25 75-99 5-29 (191)
436 TIGR01425 SRP54_euk signal rec 95.6 0.16 3.5E-06 53.4 12.7 40 75-116 99-138 (429)
437 TIGR02868 CydC thiol reductant 95.6 0.11 2.4E-06 57.9 12.4 23 76-98 361-383 (529)
438 PRK10416 signal recognition pa 95.6 0.075 1.6E-06 54.1 10.0 91 75-167 113-208 (318)
439 TIGR00235 udk uridine kinase. 95.6 0.011 2.4E-07 56.5 3.8 26 74-99 4-29 (207)
440 TIGR00416 sms DNA repair prote 95.6 0.035 7.6E-07 59.5 7.8 54 57-116 79-132 (454)
441 COG1116 TauB ABC-type nitrate/ 95.6 0.057 1.2E-06 51.4 8.2 22 77-98 30-51 (248)
442 KOG0924 mRNA splicing factor A 95.6 0.13 2.8E-06 55.4 11.5 135 76-214 371-529 (1042)
443 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.11 2.3E-06 49.9 10.3 112 76-201 31-160 (222)
444 PRK15453 phosphoribulokinase; 95.6 0.078 1.7E-06 52.0 9.3 78 74-153 3-88 (290)
445 TIGR02858 spore_III_AA stage I 95.6 0.1 2.3E-06 51.6 10.4 115 75-198 110-232 (270)
446 cd02028 UMPK_like Uridine mono 95.6 0.025 5.4E-07 52.5 5.8 22 78-99 1-22 (179)
447 PTZ00088 adenylate kinase 1; P 95.5 0.011 2.4E-07 56.9 3.5 22 78-99 8-29 (229)
448 PF03193 DUF258: Protein of un 95.5 0.019 4E-07 51.4 4.5 36 55-99 23-58 (161)
449 PRK10463 hydrogenase nickel in 95.5 0.055 1.2E-06 53.5 8.2 87 74-166 102-195 (290)
450 PRK05986 cob(I)alamin adenolsy 95.5 0.094 2E-06 48.3 9.1 119 76-197 22-160 (191)
451 TIGR01420 pilT_fam pilus retra 95.5 0.04 8.7E-07 57.1 7.7 109 77-196 123-231 (343)
452 PRK10875 recD exonuclease V su 95.5 0.058 1.3E-06 59.9 9.2 114 76-192 167-299 (615)
453 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.062 1.4E-06 48.7 8.1 117 77-200 26-145 (157)
454 cd02029 PRK_like Phosphoribulo 95.5 0.04 8.7E-07 53.5 6.9 76 78-155 1-84 (277)
455 PRK14721 flhF flagellar biosyn 95.4 0.091 2E-06 55.3 10.0 90 75-166 190-280 (420)
456 COG0467 RAD55 RecA-superfamily 95.4 0.036 7.7E-07 55.2 6.9 51 74-128 21-71 (260)
457 cd03215 ABC_Carb_Monos_II This 95.4 0.079 1.7E-06 49.4 8.7 23 77-99 27-49 (182)
458 PRK11823 DNA repair protein Ra 95.4 0.047 1E-06 58.6 8.0 53 58-116 66-118 (446)
459 TIGR03574 selen_PSTK L-seryl-t 95.4 0.045 9.8E-07 54.0 7.4 21 79-99 2-22 (249)
460 PF08433 KTI12: Chromatin asso 95.4 0.05 1.1E-06 53.8 7.6 23 77-99 2-24 (270)
461 PRK04040 adenylate kinase; Pro 95.4 0.012 2.7E-07 54.9 3.2 24 76-99 2-25 (188)
462 COG4619 ABC-type uncharacteriz 95.4 0.48 1E-05 42.1 12.4 21 78-98 31-51 (223)
463 COG4181 Predicted ABC-type tra 95.4 0.67 1.5E-05 41.4 13.3 85 119-203 122-215 (228)
464 KOG0740 AAA+-type ATPase [Post 95.3 0.11 2.4E-06 53.9 10.0 25 74-98 184-208 (428)
465 cd03243 ABC_MutS_homologs The 95.3 0.093 2E-06 49.9 9.0 22 77-98 30-51 (202)
466 PF00006 ATP-synt_ab: ATP synt 95.3 0.039 8.5E-07 52.4 6.2 47 78-128 17-64 (215)
467 PF13306 LRR_5: Leucine rich r 95.3 0.085 1.8E-06 45.9 8.0 37 425-462 7-44 (129)
468 COG2274 SunT ABC-type bacterio 95.3 0.12 2.5E-06 58.5 10.8 53 146-198 618-672 (709)
469 cd03233 ABC_PDR_domain1 The pl 95.3 0.23 4.9E-06 47.2 11.4 24 76-99 33-56 (202)
470 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.17 3.7E-06 49.7 10.8 123 77-199 26-180 (246)
471 PRK03846 adenylylsulfate kinas 95.2 0.028 6.1E-07 53.3 5.1 25 74-98 22-46 (198)
472 PF09848 DUF2075: Uncharacteri 95.2 0.059 1.3E-06 56.2 7.9 40 77-116 2-41 (352)
473 COG4107 PhnK ABC-type phosphon 95.2 0.27 5.8E-06 43.7 10.4 23 77-99 33-55 (258)
474 TIGR00764 lon_rel lon-related 95.2 0.034 7.5E-07 62.0 6.4 76 47-132 16-91 (608)
475 COG0529 CysC Adenylylsulfate k 95.2 0.03 6.6E-07 49.9 4.7 26 74-99 21-46 (197)
476 cd03280 ABC_MutS2 MutS2 homolo 95.2 0.037 7.9E-07 52.6 5.8 21 77-97 29-49 (200)
477 PRK09302 circadian clock prote 95.2 0.14 3E-06 56.6 11.1 99 58-165 17-140 (509)
478 PF13086 AAA_11: AAA domain; P 95.2 0.038 8.2E-07 54.0 6.1 22 78-99 19-40 (236)
479 COG1102 Cmk Cytidylate kinase 95.2 0.013 2.9E-07 51.2 2.4 42 78-132 2-43 (179)
480 cd00227 CPT Chloramphenicol (C 95.1 0.015 3.3E-07 53.9 2.9 23 77-99 3-25 (175)
481 TIGR01447 recD exodeoxyribonuc 95.1 0.09 1.9E-06 58.3 9.3 24 76-99 160-183 (586)
482 PF03266 NTPase_1: NTPase; In 95.1 0.021 4.5E-07 52.2 3.7 22 79-100 2-23 (168)
483 COG0194 Gmk Guanylate kinase [ 95.1 0.018 4E-07 52.0 3.2 24 76-99 4-27 (191)
484 PRK09544 znuC high-affinity zi 95.1 0.2 4.3E-06 49.4 10.9 24 76-99 30-53 (251)
485 PRK03839 putative kinase; Prov 95.1 0.016 3.5E-07 54.0 2.9 22 78-99 2-23 (180)
486 PRK06995 flhF flagellar biosyn 95.1 0.12 2.5E-06 55.4 9.5 89 76-166 256-345 (484)
487 cd01129 PulE-GspE PulE/GspE Th 95.1 0.066 1.4E-06 53.1 7.3 96 55-167 66-161 (264)
488 PRK09302 circadian clock prote 95.1 0.14 3E-06 56.5 10.7 61 58-126 259-319 (509)
489 TIGR01360 aden_kin_iso1 adenyl 95.1 0.019 4E-07 54.0 3.3 23 76-98 3-25 (188)
490 TIGR03575 selen_PSTK_euk L-ser 95.1 0.08 1.7E-06 54.0 8.0 21 79-99 2-22 (340)
491 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.18 3.9E-06 47.8 10.1 54 146-199 113-168 (200)
492 COG2204 AtoC Response regulato 95.0 0.099 2.2E-06 55.2 8.8 122 46-181 138-261 (464)
493 COG1127 Ttg2A ABC-type transpo 95.0 0.24 5.1E-06 46.9 10.2 56 144-199 152-211 (263)
494 COG1117 PstB ABC-type phosphat 95.0 0.22 4.8E-06 46.1 9.8 43 48-98 13-55 (253)
495 PRK13543 cytochrome c biogenes 95.0 0.32 6.8E-06 46.8 11.8 23 77-99 38-60 (214)
496 PRK11361 acetoacetate metaboli 95.0 0.076 1.7E-06 57.9 8.4 134 50-195 144-288 (457)
497 PRK14737 gmk guanylate kinase; 95.0 0.022 4.8E-07 53.1 3.5 25 75-99 3-27 (186)
498 cd01134 V_A-ATPase_A V/A-type 95.0 0.15 3.2E-06 51.6 9.4 47 77-127 158-205 (369)
499 cd01135 V_A-ATPase_B V/A-type 95.0 0.091 2E-06 51.5 7.8 89 77-165 70-176 (276)
500 COG4133 CcmA ABC-type transpor 95.0 0.34 7.3E-06 44.0 10.6 22 77-98 29-50 (209)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-62 Score=545.58 Aligned_cols=491 Identities=30% Similarity=0.495 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccc-cccccCCCccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEc
Q 036466 5 IKKIRERFDEIANMVGKFNLTQRLDDHRR-VVQEEREPTHSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVG 83 (727)
Q Consensus 5 i~~~~~~l~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G 83 (727)
+..+.+++..+...+..+..+........ ..+.+..+..+...... ||.+..++.+.+.|... +..+++|+|
T Consensus 114 ~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~G 186 (889)
T KOG4658|consen 114 SYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYG 186 (889)
T ss_pred hHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEEC
Confidence 34455566666555555554442111111 11111222222222233 99999999999999884 237999999
Q ss_pred CCCCcHHHHHHHHhcchh-hHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHHhCCceEEEE
Q 036466 84 IGGLGKTALAKLLYNDQR-VEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN--HGNLDPDRLQKVLRDSLNGKRYLLV 160 (727)
Q Consensus 84 ~~GiGKTtLa~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~Llv 160 (727)
|||+||||||++++++.. ++.+|+.++||.+++.++...++++++..++... +.....++....+.+.|+++|++||
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 999999999999999877 8999999999999999999999999999996532 2333347888999999999999999
Q ss_pred EcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHH
Q 036466 161 MDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLV 240 (727)
Q Consensus 161 lDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (727)
+||+|+.. +|+.+...++....|++|++|||+.+++... .+....++++.|+.+|||++|++.++.......+..+
T Consensus 267 LDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~--m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~ 342 (889)
T KOG4658|consen 267 LDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRA--MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIE 342 (889)
T ss_pred Eecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhcc--ccCCccccccccCccccHHHHHHhhccccccccccHH
Confidence 99999876 6999988888887899999999999998752 2234789999999999999999999877666666689
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhccccccc----cCCCChhHHHHHhhhcCChhHHHHHhHhccC
Q 036466 241 KIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLR----QAPDDILPALRLSYDQLPPHLKQCFAYCSIF 316 (727)
Q Consensus 241 ~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f 316 (727)
++|++++++|+|+|+|+.++|..|+.+....+|+.+.+....... ...+.+..++..||+.|+++.|.||+|||+|
T Consensus 343 ~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalF 422 (889)
T KOG4658|consen 343 ELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALF 422 (889)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999886655522 2235788999999999999999999999999
Q ss_pred CCCCccChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhc---
Q 036466 317 PKDYEFASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAK--- 393 (727)
Q Consensus 317 ~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~--- 393 (727)
|+++.++...++.+|+|+|+++........++++..++.+|++++|+......+ ...+|.|||++|++|.++++
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~---~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG---RKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc---ceeEEEeeHHHHHHHHHHhcccc
Confidence 999999999999999999999997778888999999999999999999876443 56789999999999999999
Q ss_pred --CcEEEecCC----------------------------------CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEe
Q 036466 394 --GECLTVNST----------------------------------GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVL 437 (727)
Q Consensus 394 --~~~~~~~~~----------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 437 (727)
++..+.... .+++++.+..... ........+|..+|.|++||+
T Consensus 500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred ccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEEC
Confidence 555444431 2233333321100 011122233445555555555
Q ss_pred cCCC-ccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc
Q 036466 438 TNSA-IEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK 511 (727)
Q Consensus 438 ~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 511 (727)
++|. +..+|+.++.+.|||+|+++++. +..+|..+.++..|.+||+..+.....+|.....+.+|++|.+...
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5433 23455555555555555555544 4455555555555555555544444444444444555555555433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-57 Score=534.69 Aligned_cols=632 Identities=22% Similarity=0.344 Sum_probs=425.0
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccccccc---ccccc--CCCccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeE
Q 036466 3 PQIKKIRERFDEIANMVGKFNLTQRLDDHRR---VVQEE--REPTHSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVS 77 (727)
Q Consensus 3 ~~i~~~~~~l~~v~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~ 77 (727)
+++++||++|.+|++..+ |........... .+... .-...++.+...+|||+++++++..++... .++.+
T Consensus 134 ~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCceE
Confidence 579999999999999988 444321111100 01101 112334455678999999999999988643 25689
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec---CCC------------CHHHHHHHHHHHhcCCCCCCCChH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS---EDS------------GKRQIMTKIINSVTGGNHGNLDPD 142 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~---~~~------------~~~~~~~~ll~~l~~~~~~~~~~~ 142 (727)
+|+|+||||+||||||+++++ +...+|++.+|++.. ... ....++.+++.++........ .
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~ 284 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI--Y 284 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc--C
Confidence 999999999999999999998 677889888877521 100 012345555555533211111 1
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHH
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLS 222 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 222 (727)
. ...+++.++++|+||||||+|+.+ +|+.+.......++|++||||||+..+...... ...++++.+++++|++
T Consensus 285 ~-~~~~~~~L~~krvLLVLDdv~~~~--~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~---~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 285 H-LGAMEERLKHRKVLIFIDDLDDQD--VLDALAGQTQWFGSGSRIIVITKDKHFLRAHGI---DHIYEVCLPSNELALE 358 (1153)
T ss_pred C-HHHHHHHHhCCeEEEEEeCCCCHH--HHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCC---CeEEEecCCCHHHHHH
Confidence 1 145677888999999999997643 666766554455789999999999988754432 3789999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhccccccccCCCChhHHHHHhhhcC
Q 036466 223 LFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQL 302 (727)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 302 (727)
+|++.||+...+ .....+++.+|++.|+|+|+|+.++|+.|+++ ...+|+........ .....+..+++.||+.|
T Consensus 359 LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 359 MFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhcc
Confidence 999999876443 45577889999999999999999999999875 57899988765433 22357999999999999
Q ss_pred Ch-hHHHHHhHhccCCCCCccChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHh
Q 036466 303 PP-HLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIH 381 (727)
Q Consensus 303 ~~-~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h 381 (727)
++ .+|.+|+++|+|+.+..++ .+..|++.+.+.. ...++.|++++|++... ..+.||
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~--------~~~~MH 491 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE--------DIVEMH 491 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC--------CeEEhh
Confidence 86 5999999999998876554 4667777654332 23388999999998732 258999
Q ss_pred hHHHHHHHHHhcCcE-------EEecC------------CCCeeEEEeccCCCc--------------------------
Q 036466 382 DLMHDLALLVAKGEC-------LTVNS------------TGRVRTILFPIDDER-------------------------- 416 (727)
Q Consensus 382 ~li~~~~~~~~~~~~-------~~~~~------------~~~~~~l~~~~~~~~-------------------------- 416 (727)
+++|++++.++.++. +.... ...++.+.+......
T Consensus 492 dLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~ 571 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD 571 (1153)
T ss_pred hHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc
Confidence 999999999976542 11110 012222222110000
Q ss_pred ---chhhhhhhhhc-----------------------CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccC
Q 036466 417 ---TSQSFVTSCIS-----------------------KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLP 470 (727)
Q Consensus 417 ---~~~~~~~~~~~-----------------------~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 470 (727)
.....++..|. .+.+|+.|++.++.+..+|..+..+++|++|++++|...+.+|
T Consensus 572 ~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 572 QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 00000111111 2345566666666666666666677788888887776666666
Q ss_pred ccccCCCCCCEeecCCCCCCcccChhhcccccCceeEeccc-ccccccccCCCCCCCcEEeccccCCchhhhhhcc----
Q 036466 471 NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTK-QKSLLESGIGCLSSLRFLMISNCGNLEYLFEDID---- 545 (727)
Q Consensus 471 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~---- 545 (727)
. ++.+++|++|++++|..+..+|..+.++.+|+.|++++| .+..+|..+ .+++|+.|++++|..+..+|....
T Consensus 652 ~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 652 D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCe
Confidence 4 677788888888887777778877888888888888765 344555443 566777777777654443332110
Q ss_pred ----------------------------------------------CCCCcCeeecccCcCCCcCccccccCcccceeec
Q 036466 546 ----------------------------------------------QLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIF 579 (727)
Q Consensus 546 ----------------------------------------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 579 (727)
.+++|+.|++++|.....+|..+.++++|+.|++
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 0124445555555544455555555666666666
Q ss_pred cccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccc
Q 036466 580 DECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEAL 659 (727)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L 659 (727)
++|..+.. ++... .+++|+.|+|++|..+..+|.. .++|+.|+|++|. ++.+|.++..+++|
T Consensus 810 s~C~~L~~-----------LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n~-i~~iP~si~~l~~L 871 (1153)
T PLN03210 810 ENCINLET-----------LPTGI-NLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRTG-IEEVPWWIEKFSNL 871 (1153)
T ss_pred CCCCCcCe-----------eCCCC-CccccCEEECCCCCcccccccc-----ccccCEeECCCCC-CccChHHHhcCCCC
Confidence 65544432 12221 4556666666666655555432 3567777777664 44567778888899
Q ss_pred ccccccccccccccCccCCCCCccCeeeccCCcchhh
Q 036466 660 ENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 660 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
+.|++++|+.+..+|..+..+++|+.+++++|+.+..
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 9999999988888888888888999999999988864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-37 Score=317.33 Aligned_cols=279 Identities=36% Similarity=0.611 Sum_probs=219.8
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG 133 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~ 133 (727)
||.++++|.++|.... .+.++|+|+|+||+||||||++++++...+.+|+.++|++++...+..+++.+++.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998853 568999999999999999999999976788999999999999999999999999999976
Q ss_pred CCC---CCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCce
Q 036466 134 GNH---GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGY 210 (727)
Q Consensus 134 ~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~ 210 (727)
... ...+.++....+.+.+.++++||||||+|+.. .|+.+...++....+++||||||+..+...... ....+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~--~~~~~ 152 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGG--TDKVI 152 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHS--CEEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccccccccccc--ccccc
Confidence 532 45678889999999999999999999997554 777777777666679999999999876654432 13789
Q ss_pred ecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhcccccccc---C
Q 036466 211 NLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLRQ---A 287 (727)
Q Consensus 211 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~~---~ 287 (727)
++++|+.+|++++|.+.++.......+...+.+++|++.|+|+|+|+.++|+.++.+.....|+...+........ .
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999986654222334456789999999999999999999996655778898877654433322 3
Q ss_pred CCChhHHHHHhhhcCChhHHHHHhHhccCCCCCccChHHHHHHHHhcccccCC
Q 036466 288 PDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSP 340 (727)
Q Consensus 288 ~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~ 340 (727)
...+..++..||+.|+++.|.||.++|+||+++.++...++.+|+++|++...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 45699999999999999999999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=5.5e-23 Score=245.01 Aligned_cols=283 Identities=19% Similarity=0.195 Sum_probs=170.2
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcc-ccccccC-CCCcCcEEeccCCccccccCccccCCCCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIE-VLPRKMG-NLKQLRHLDLSGNRKIKKLPNSICELQSLQ 480 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 480 (727)
.+++.+.+....- ....+..|..+++|++|++++|.+. .+|..+. .+.+|++|++++|.+.+.+|. ..+++|+
T Consensus 69 ~~v~~L~L~~~~i---~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNI---SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCc---cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 4566666542211 1123455677777888888777775 5565433 677777777777766555553 3466677
Q ss_pred EeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCc
Q 036466 481 TLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 481 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
+|++++|...+.+|..++++++|++|++++|.+. ..|..++.+++|++|++++|.....+|..+..+++|+.|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 7777776666666666777777777777776655 555566667777777777666555666666666777777776666
Q ss_pred CCCcCccccccCcccceeeccccccccccc-------------cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchh
Q 036466 560 RLNLLPPAMKYLSSLERLIFDECESLSLSL-------------NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQW 626 (727)
Q Consensus 560 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 626 (727)
..+.+|..+..+++|++|++++|....... ...+...+.++..+..+++|++|+|++|.....+|..
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 655666666666667777666653211000 0000111223334444556666666666555555555
Q ss_pred hhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 627 LLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 627 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus 304 ~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 304 V--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred H--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 4 455666666666666555566556666666666666666655666666666666666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=6.2e-23 Score=244.51 Aligned_cols=258 Identities=22% Similarity=0.227 Sum_probs=156.2
Q ss_pred hhhhhcCCCcceEEEecCCCcc-ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIE-VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYL 500 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 500 (727)
.+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+.++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3455667777777777777665 556667777777777777777666667667777777777777766666677777777
Q ss_pred ccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeec
Q 036466 501 VSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIF 579 (727)
Q Consensus 501 ~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 579 (727)
++|++|++++|.+. ..|..++.+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 77777777777665 45556667777777777776655556666666777777777776666666666666677777777
Q ss_pred cccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCC--------------
Q 036466 580 DECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPN-------------- 645 (727)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~-------------- 645 (727)
++|... +..+..+..+++|+.|+|++|.....+|..+ +.+++|+.|++++|.+
T Consensus 316 ~~n~~~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 316 FSNNFT-----------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred CCCccC-----------CcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 665322 1122333344455555555554444444433 3344455555544444
Q ss_pred ----------ccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 646 ----------FMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 646 ----------~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 44444444445555555555555444455445555555555555543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-20 Score=187.32 Aligned_cols=298 Identities=18% Similarity=0.139 Sum_probs=185.5
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
....|.++++|+.+++.+|.++.+|.......||+.|+|.+|.+.+.-.+.+..++.|++|||+.|.+...--..+..-.
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV 173 (873)
T ss_pred cHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence 34567899999999999999999998777778899999998875444445677888899999998654433224555567
Q ss_pred cCceeEeccccccccc-ccCCCCCCCcEEeccccCCchhhh-hhccCCCCcCeeecccCcCCCcCccccccCcccceeec
Q 036466 502 SLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCGNLEYLF-EDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIF 579 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 579 (727)
++++|++++|.++.+. ..+..+.+|..|+|+.|.. +.+| .+|..+++|+.|+|..|..-..--..+..+++|+.|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 8899999999888444 3567778888888888644 4444 56777888888888887642211234566777777777
Q ss_pred cccccccccccc------------cccccCCC-CCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCc
Q 036466 580 DECESLSLSLNM------------EMKEEGSH-HDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNF 646 (727)
Q Consensus 580 ~~~~~l~~~~~~------------~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~ 646 (727)
..|+.-...-.. +.+...++ ..-+.+++.|++|+|+.|.....-+..+ .-+++|+.|+|+.|.+.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc
Confidence 665433222000 00000000 1112244455555555553322222222 23455666666555444
Q ss_pred cccCccCccccccccccccccccccccC-ccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeecccccccC
Q 036466 647 MALPGSLKDLEALENLVIGICPKLSSLP-EGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKSS 725 (727)
Q Consensus 647 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (727)
.--+.+|..++.|++|+|+.|.. +.+. ..+..+++|+.|+++.|.. .+|...+...+.-+-.+..+.++||+||++
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred cCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCceeeec
Confidence 33344555566666666665542 2221 2345667888888887764 233444555566677888899999999875
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=2.1e-18 Score=205.57 Aligned_cols=267 Identities=24% Similarity=0.396 Sum_probs=170.2
Q ss_pred hhhhhcCCCcceEEEecCCCcc-------ccccccCCCC-cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIE-------VLPRKMGNLK-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEEL 493 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 493 (727)
....|..|++|+.|.+.++... .+|..+..++ +|+.|.+.++. ...+|..+ ...+|+.|++.+|. +..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-cccc
Confidence 3456899999999999765321 3555555543 57777777765 55666655 45677777777643 4456
Q ss_pred ChhhcccccCceeEecccc-cccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCc
Q 036466 494 PKDIRYLVSLRMFVVTTKQ-KSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLS 572 (727)
Q Consensus 494 ~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 572 (727)
+..+..+++|+.|+++++. +..+| .++.+++|++|++.+|..+..+|..+..+++|+.|++++|..++.+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 6666677777777776554 33333 46666777777777777777777777777777777777776666666544 566
Q ss_pred ccceeeccccccccccccc---------cccccCCCCC------------------------------CCCCCceeeEEE
Q 036466 573 SLERLIFDECESLSLSLNM---------EMKEEGSHHD------------------------------RKNVGSHLRTLY 613 (727)
Q Consensus 573 ~L~~L~l~~~~~l~~~~~~---------~~~~~~~~~~------------------------------~~~~~~~L~~L~ 613 (727)
+|+.|++++|..+...... ..+....++. ....+++|+.|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 6777777766543221000 0000000110 111234777788
Q ss_pred ecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccccc--------------------cc
Q 036466 614 VARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLS--------------------SL 673 (727)
Q Consensus 614 L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------~l 673 (727)
|++|..+..+|..+ +.+++|+.|+|++|...+.+|... ++++|+.|++++|..+. .+
T Consensus 785 Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 785 LSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred CCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 88877777777776 667788888888877777777644 56666666666665443 34
Q ss_pred CccCCCCCccCeeeccCCcchhh
Q 036466 674 PEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 674 ~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
|.++..+++|+.|++++|++++.
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCc
Confidence 55667788899999999888865
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=4.6e-21 Score=194.98 Aligned_cols=266 Identities=25% Similarity=0.358 Sum_probs=197.4
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCcccc-CCCCCCEeecCCCCCCcccChhhccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYL 500 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l 500 (727)
+|+.+-+++-|.+||||+|.+...|..+...+++-+|+|++|+ +..+|..+. +++.|-+|||+. +.+..+|...+.+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence 3444557899999999999999999999889999999999887 777886544 788888999987 5577888888999
Q ss_pred ccCceeEeccccccccc-ccCCCCCCCcEEeccccC-CchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceee
Q 036466 501 VSLRMFVVTTKQKSLLE-SGIGCLSSLRFLMISNCG-NLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLI 578 (727)
Q Consensus 501 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 578 (727)
..|+.|.+++|.+...- ..+..+++|++|.+++.+ .+..+|.++..+.+|..++++.|.. ..+|..+.++++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheec
Confidence 99999999998776211 234456778888888765 4467888888899999999987654 57788888899999999
Q ss_pred cccccccccc-----------ccccccccCCCCCCCCCCceeeEEEecCCCC-CCCcchhhhcCCCCcccEEEecCCCCc
Q 036466 579 FDECESLSLS-----------LNMEMKEEGSHHDRKNVGSHLRTLYVARLTP-LLELPQWLLQGSSKTLQTLAIGDCPNF 646 (727)
Q Consensus 579 l~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~~~L~~L~L~~~~~~ 646 (727)
|++|....+. .+.+-+....+|+....++.|+.|.+.+|.. ..-+|+.+ +.+.+|+.+..++| .+
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~L 328 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KL 328 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-cc
Confidence 9988643321 1122233445566666666666666666543 22445555 56677777777655 45
Q ss_pred cccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 647 MALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 647 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
.-.|..++.+++|+.|.|+.|.++ .+|+++.-++.|+.|++.+||++
T Consensus 329 ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 667778888888888888876644 47888888889999999988887
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-19 Score=183.67 Aligned_cols=278 Identities=17% Similarity=0.134 Sum_probs=187.5
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
+++..+.+... .....-...++.++.|++||||.|.+..+|. .|..-.++++|+|++|.+.+.-...|..+.+|.+
T Consensus 125 ghl~~L~L~~N---~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 125 GHLEKLDLRHN---LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred cceeEEeeecc---ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 45566655421 1222334567778999999999999987775 4666688999999999865544456778889999
Q ss_pred eecCCCCCCcccChhhcccccCceeEecccccccc-cccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcC
Q 036466 482 LNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL-ESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPR 560 (727)
Q Consensus 482 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 560 (727)
|.|+.|.+..-.+..|.++++|+.|++..|++... ...+..+++|+.|.|..|+...--..+|-.|.+++.|+|..|..
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 99998766655557888899999999999999854 55678888999999888654332234566778888888887766
Q ss_pred CCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhh------------
Q 036466 561 LNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLL------------ 628 (727)
Q Consensus 561 ~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~------------ 628 (727)
...-..++.+++.|+.|++++|..-.+ ..+....+++|+.|+|+.|....--+..+.
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~ri-----------h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRI-----------HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred hhhhcccccccchhhhhccchhhhhee-----------ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 443345677788888888887643222 245555666777777776643221111110
Q ss_pred ----------cCCCCcccEEEecCCCCcccc---CccCccccccccccccccccccccC-ccCCCCCccCeeeccCCcch
Q 036466 629 ----------QGSSKTLQTLAIGDCPNFMAL---PGSLKDLEALENLVIGICPKLSSLP-EGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 629 ----------~~~~~~L~~L~L~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~c~~l 694 (727)
...+.+|++|+|.+|.+...+ ...|.++++|+.|.+.||+ ++++| .++.++++|+.|++.+|+.-
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcce
Confidence 023456677777666544322 2235667777777777765 45555 35677888888888887754
Q ss_pred h
Q 036466 695 C 695 (727)
Q Consensus 695 ~ 695 (727)
.
T Consensus 430 S 430 (873)
T KOG4194|consen 430 S 430 (873)
T ss_pred e
Confidence 3
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=3.1e-20 Score=189.03 Aligned_cols=247 Identities=22% Similarity=0.294 Sum_probs=189.7
Q ss_pred hhcCCCcceEEEecCCCcc--ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccC-hhhcccc
Q 036466 425 CISKSKSLRVLVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP-KDIRYLV 501 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~ 501 (727)
.+..++.||.+.+..|.+. .+|+.+.++..|+.|+|++|. +.+.|..+.+.+++..|+|++|+ +..+| ..+.++.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhH
Confidence 3567888999999888877 688888899999999999998 77888888888999999999854 55566 5667889
Q ss_pred cCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcC-CCcCccccccCcccceeecc
Q 036466 502 SLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPR-LNLLPPAMKYLSSLERLIFD 580 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~ 580 (727)
.|-.|++++|++..+|+.+..+.+|++|+|++|+....-...+..+.+|+.|.+++.+. +..+|.++..+.+|..++++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 99999999999999999999999999999999876554445566677788888887654 45788888889999999998
Q ss_pred ccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccc
Q 036466 581 ECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALE 660 (727)
Q Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 660 (727)
.|+ + -.+|...-...+|+.|.|++|.. +.+.... +.+.+|++|++|.|. ++.+|..++.+++|+
T Consensus 231 ~N~-L-----------p~vPecly~l~~LrrLNLS~N~i-teL~~~~--~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 231 ENN-L-----------PIVPECLYKLRNLRRLNLSGNKI-TELNMTE--GEWENLETLNLSRNQ-LTVLPDAVCKLTKLT 294 (1255)
T ss_pred ccC-C-----------CcchHHHhhhhhhheeccCcCce-eeeeccH--HHHhhhhhhccccch-hccchHHHhhhHHHH
Confidence 752 2 22356666777899999998843 3443333 345688888888875 567788788888888
Q ss_pred cccccccccc-cccCccCCCCCccCeeecc
Q 036466 661 NLVIGICPKL-SSLPEGMHHLTTLKTLAIE 689 (727)
Q Consensus 661 ~L~l~~~~~~-~~l~~~l~~l~~L~~L~l~ 689 (727)
.|.+.+|++. +.+|..++.+.+|+.+...
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 8888777665 4567777766666665443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=9.9e-20 Score=176.35 Aligned_cols=263 Identities=23% Similarity=0.254 Sum_probs=152.6
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
.|..+..|.++..+++.+|.+..+|+..-.++.|++|+...|- .+.+|+.++.+.+|+-|++..|+ +..+| .|..|.
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs 228 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCS 228 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccH
Confidence 3444555556666666666666555554446666666665553 55566666666666666665532 33444 455555
Q ss_pred cCceeEecccccccccccCC-CCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecc
Q 036466 502 SLRMFVVTTKQKSLLESGIG-CLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFD 580 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 580 (727)
.|..|+++.|.+..+|...+ .++++..|++..| .++++|..+.-+.+|..|++++|.. +.+|..++++ +|+.|.+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhc
Confidence 55555555555554443322 4455555555542 3344444444455555555554332 3444444444 44444443
Q ss_pred cccccccc------------------------------------------------------------------------
Q 036466 581 ECESLSLS------------------------------------------------------------------------ 588 (727)
Q Consensus 581 ~~~~l~~~------------------------------------------------------------------------ 588 (727)
+++--++.
T Consensus 306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh
Confidence 33110000
Q ss_pred -------------------------------ccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccE
Q 036466 589 -------------------------------LNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQT 637 (727)
Q Consensus 589 -------------------------------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~ 637 (727)
....++..+..+..+...++|..|+|++| .+.++|..+ +.+..|+.
T Consensus 386 ~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~ 462 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQT 462 (565)
T ss_pred hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhhe
Confidence 00011112223445556679999999876 677888877 66777999
Q ss_pred EEecCCCCcc----------------------ccC-ccCccccccccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 638 LAIGDCPNFM----------------------ALP-GSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 638 L~L~~~~~~~----------------------~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
|+|+.|.+-. .++ ..+.+|.+|..|+|.+|. +..+|..++++.+|++|+++|||-=
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCccC
Confidence 9999875521 222 236788999999999875 6778999999999999999999854
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=9.7e-19 Score=169.57 Aligned_cols=253 Identities=29% Similarity=0.333 Sum_probs=212.5
Q ss_pred hhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcc
Q 036466 420 SFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRY 499 (727)
Q Consensus 420 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 499 (727)
....+-+.++..|.+|++++|....+|++++.+..+..++.++|. ...+|+.+..+.+|..|+.++|. ...+|..++.
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~ 135 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGR 135 (565)
T ss_pred hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHH
Confidence 344556788999999999999999999999999999999999988 77899999999999999999854 4566778889
Q ss_pred cccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeec
Q 036466 500 LVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIF 579 (727)
Q Consensus 500 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 579 (727)
+..|..++.++|+++..|..+..+.+|..+.+.+| .+..+|+..-.++.|++|+...| .++.+|..++.+.+|+.|++
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYL 213 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHh
Confidence 99999999999999999999999999999999885 45566666556999999998765 45789999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccc
Q 036466 580 DECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEAL 659 (727)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L 659 (727)
..++... +| .+.+|+.|+.|+++.| +...+|.... ..+++|..|||..|. +++.|..++-+.+|
T Consensus 214 ~~Nki~~------------lP-ef~gcs~L~Elh~g~N-~i~~lpae~~-~~L~~l~vLDLRdNk-lke~Pde~clLrsL 277 (565)
T KOG0472|consen 214 RRNKIRF------------LP-EFPGCSLLKELHVGEN-QIEMLPAEHL-KHLNSLLVLDLRDNK-LKEVPDEICLLRSL 277 (565)
T ss_pred hhccccc------------CC-CCCccHHHHHHHhccc-HHHhhHHHHh-cccccceeeeccccc-cccCchHHHHhhhh
Confidence 8864432 23 7889999999998876 5566666663 578999999998884 67888889999999
Q ss_pred ccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 660 ENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 660 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
++|++++|. +..+|..++++ .|+.|-+.|||.=
T Consensus 278 ~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 278 ERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhcccCCc-cccCCcccccc-eeeehhhcCCchH
Confidence 999999875 66789899999 9999999999973
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.59 E-value=1.1e-13 Score=164.42 Aligned_cols=302 Identities=14% Similarity=0.124 Sum_probs=189.7
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-CCH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-SGK 120 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-~~~ 120 (727)
..+|..+..++-|.+..+.|.+. ...++++|+|++|.||||++.++... ++.++|+++... .+.
T Consensus 7 ~~~p~~~~~~~~R~rl~~~l~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~ 71 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLAKLSGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQP 71 (903)
T ss_pred cCCCCCccccCcchHHHHHHhcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCH
Confidence 34555566788999866666431 34679999999999999999988752 225889998644 455
Q ss_pred HHHHHHHHHHhcCCCCC-------------CCChHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHHHHHHhhc-CCCC
Q 036466 121 RQIMTKIINSVTGGNHG-------------NLDPDRLQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLLL-GGAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~~~~~l~-~~~~ 184 (727)
..++..++..+...... ..+...+...+...+. +.+++|||||++..+......+...+. ...+
T Consensus 72 ~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~ 151 (903)
T PRK04841 72 ERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPE 151 (903)
T ss_pred HHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCC
Confidence 66667777766311100 0122233333333333 579999999999887656555555544 4456
Q ss_pred CCEEEEecCchHHHH--HHhhcCCCCceecC----CCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 185 GSKILVTTRSNKVAL--IMATMRGTTGYNLQ----ELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 185 ~~~iliTsr~~~~~~--~~~~~~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+.++|||||...-.. ..... .....+. +|+.+|+.+||..... . ....+.+.++++.|+|.|+++.
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~--~~~~~l~~~~l~f~~~e~~~ll~~~~~---~---~~~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVR--DQLLEIGSQQLAFDHQEAQQFFDQRLS---S---PIEAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhc--CcceecCHHhCCCCHHHHHHHHHhccC---C---CCCHHHHHHHHHHhCChHHHHH
Confidence 778889999742111 11111 1334455 9999999999986531 1 1234567899999999999999
Q ss_pred HHHhhhcCCCChhhHHHHHhcccccccc-CCCChhHHHH-HhhhcCChhHHHHHhHhccCCCCCccChHHHHHHHHhccc
Q 036466 259 TVGSLLYGSTDEHDWEYVRDNDIWKLRQ-APDDILPALR-LSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGL 336 (727)
Q Consensus 259 ~~a~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~ 336 (727)
.++..+.+....... .. ..+.. ....+...+. ..++.||+..++++..+|+++ .+... +.. .+
T Consensus 224 l~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l 288 (903)
T PRK04841 224 LIALSARQNNSSLHD--SA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RV 288 (903)
T ss_pred HHHHHHhhCCCchhh--hh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HH
Confidence 998777443211000 00 01111 1234555444 348999999999999999986 33322 222 11
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhc
Q 036466 337 LQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAK 393 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~ 393 (727)
... +.+...+.+|.+.+++....... ...|+.|+++++++.....
T Consensus 289 ~~~--------~~~~~~L~~l~~~~l~~~~~~~~----~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 289 TGE--------ENGQMRLEELERQGLFIQRMDDS----GEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred cCC--------CcHHHHHHHHHHCCCeeEeecCC----CCEEehhHHHHHHHHHHHH
Confidence 111 12467899999999975432211 1247789999999988763
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=3.4e-12 Score=136.01 Aligned_cols=311 Identities=14% Similarity=0.094 Sum_probs=184.5
Q ss_pred cCCCccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 38 EREPTHSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 38 ~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
.+.+-.+...|..|+||++++++|...+.....+ ..+..+.|+|++|+|||++++++++........-..+|+++...
T Consensus 19 ~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 19 DEEVLEPDYVPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred ChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 3444455556778999999999999998654322 34456899999999999999999985333332234668888887
Q ss_pred CCHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHHhC--CceEEEEEcCCCCCC----hhhHHHHHHhhcCCCCC--CE
Q 036466 118 SGKRQIMTKIINSVTGGN--HGNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNED----PRAWGELKSLLLGGAEG--SK 187 (727)
Q Consensus 118 ~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~----~~~~~~~~~~l~~~~~~--~~ 187 (727)
.+...++..++.++.... ....+.++..+.+.+.+. +++++||||++|... ...+..+...+.. .++ ..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~ 175 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIG 175 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEE
Confidence 788899999999986522 233456677777777765 357999999997643 2223333332222 223 33
Q ss_pred EEEecCchHHHHHH----hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHc----CCchHHHHH
Q 036466 188 ILVTTRSNKVALIM----ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKC----RGIPLAVRT 259 (727)
Q Consensus 188 iliTsr~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~ 259 (727)
+|.++......... ...-....+.+++++.++..+++...+...... .....++++.+++.+ |..+.++.+
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 56665544332221 111123568999999999999999876332111 111223344444444 456677766
Q ss_pred HHhhhc----CCC---ChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCCC--CCccChHHHHHH
Q 036466 260 VGSLLY----GST---DEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPK--DYEFASVHLVQL 330 (727)
Q Consensus 260 ~a~~l~----~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~--~~~~~~~~l~~~ 330 (727)
+-.+.. ... ............ -...+...+..||.+.|.++..++...+ ...+....+...
T Consensus 255 l~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~ 324 (394)
T PRK00411 255 LRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEE 324 (394)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 543321 111 112222111110 1233456789999999999888775542 123444444332
Q ss_pred H--HhcccccCCCCCchHHHHHHHHHHHHHhCCcceec
Q 036466 331 W--MAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDL 366 (727)
Q Consensus 331 w--~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 366 (727)
. +++.. +...-.+...-.++..|.+.++|...
T Consensus 325 y~~l~~~~----~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 325 YKELCEEL----GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHc----CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 22111 11111234567799999999999864
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.7e-15 Score=155.66 Aligned_cols=262 Identities=19% Similarity=0.109 Sum_probs=169.9
Q ss_pred hhhcCCCcceEEEecCCCcc-----ccccccCCCCcCcEEeccCCccc------cccCccccCCCCCCEeecCCCCCCcc
Q 036466 424 SCISKSKSLRVLVLTNSAIE-----VLPRKMGNLKQLRHLDLSGNRKI------KKLPNSICELQSLQTLNLGDCLELEE 492 (727)
Q Consensus 424 ~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~ 492 (727)
..+..+++|+.++++++.++ .++..+...+.+++++++++... ..++..+..+++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44556677999999999874 35556677788999999887643 12344566788999999998877665
Q ss_pred cChhhccccc---CceeEecccccc-----cccccCCCC-CCCcEEeccccCCc----hhhhhhccCCCCcCeeecccCc
Q 036466 493 LPKDIRYLVS---LRMFVVTTKQKS-----LLESGIGCL-SSLRFLMISNCGNL----EYLFEDIDQLSVLRSLVVNACP 559 (727)
Q Consensus 493 ~~~~l~~l~~---L~~L~l~~~~~~-----~~~~~~~~l-~~L~~L~l~~~~~~----~~l~~~l~~l~~L~~L~l~~~~ 559 (727)
.+..+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++|... ..+...+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5555555555 999999988876 222334555 78999999988654 2345566777889999998887
Q ss_pred CCC----cCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhh---cCCC
Q 036466 560 RLN----LLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLL---QGSS 632 (727)
Q Consensus 560 ~~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~---~~~~ 632 (727)
..+ .++..+..+++|++|++++|..-.. ....+...+..+++|+.|++++|.........+. ....
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 643 2333445556888888888743211 0111223345567888888888754331111111 0124
Q ss_pred CcccEEEecCCCCcc----ccCccCccccccccccccccccccc----cCccCCCC-CccCeeeccCCc
Q 036466 633 KTLQTLAIGDCPNFM----ALPGSLKDLEALENLVIGICPKLSS----LPEGMHHL-TTLKTLAIEECP 692 (727)
Q Consensus 633 ~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----l~~~l~~l-~~L~~L~l~~c~ 692 (727)
++|++|++++|.+.. .+...+..+++|+.|++++|..... +...+... +.|++++|.++|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 678888888886541 2334455567888888888876643 33334444 678888887765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=8.3e-14 Score=155.33 Aligned_cols=226 Identities=21% Similarity=0.277 Sum_probs=168.3
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|+.|++++|.+..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|... .+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 579999999999999887664 589999999987 556776543 47999999987654 6776653 589999999
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
+|.+..+|..+. ++|++|++++| .+..+|..+. ++|+.|++++|... .+|..+ +++|+.|.+++|....
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~--- 339 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS--- 339 (754)
T ss_pred CCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc---
Confidence 999998776553 58999999997 4455665442 47899999988764 456543 3689999998874221
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
++..+ +++|+.|+|++|.. ..+|..+ .++|+.|+|++|.+. .+|..+. ..|+.|++++|.+
T Consensus 340 ---------LP~~l--~~sL~~L~Ls~N~L-~~LP~~l----p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 340 ---------LPASL--PPELQVLDVSKNQI-TVLPETL----PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred ---------CChhh--cCcccEEECCCCCC-CcCChhh----cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCc
Confidence 22222 36899999999854 4677654 368999999998654 5666443 4799999999875
Q ss_pred ccccCcc----CCCCCccCeeeccCCcch
Q 036466 670 LSSLPEG----MHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 670 ~~~l~~~----l~~l~~L~~L~l~~c~~l 694 (727)
. .+|.. .+.++++..|++.+||.-
T Consensus 401 ~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 401 V-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred c-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4 66653 344588999999999963
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.48 E-value=2e-12 Score=147.29 Aligned_cols=317 Identities=15% Similarity=0.180 Sum_probs=189.9
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceE---EEEecCC---CCHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKI---WICVSED---SGKRQI 123 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---~~~~~~~---~~~~~~ 123 (727)
.++||+.+++.|...+.....+ ...++.+.|.+|||||+++++|... ..+.+...+ |-..... ....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g---~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKG---RGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCC---CeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 3789999999999999887644 3459999999999999999999984 333322111 1111111 122234
Q ss_pred HHHHHHHhcCC------------------------------------CCC-----CCChHH-----HHHHHHHHh-CCce
Q 036466 124 MTKIINSVTGG------------------------------------NHG-----NLDPDR-----LQKVLRDSL-NGKR 156 (727)
Q Consensus 124 ~~~ll~~l~~~------------------------------------~~~-----~~~~~~-----~~~~l~~~l-~~~~ 156 (727)
+++++.++... .++ +..... ....+.-.. +++|
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 44444444100 000 000111 111222222 3469
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCC---C---CCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGA---E---GSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~---~---~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
+++|+||++|.|......+...+.... . ..-.+.|.+.. .............+.+.||+..+...+.......
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 999999999999877777665554432 1 22222333322 2222223334478999999999999999987633
Q ss_pred CCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCC------CChhhHHHHHhccccccccCCCChhHHHHHhhhcCCh
Q 036466 231 VGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGS------TDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPP 304 (727)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 304 (727)
.. ....+....|++++.|+|+++..+.+.+.+. .+...|..-. .........+++.+.+....++||.
T Consensus 235 ~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~--~~i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 235 TK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI--ASLGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred cc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH--HhcCCchhhHHHHHHHHHHHhcCCH
Confidence 22 2234567899999999999999999999763 2333443211 1111122223466679999999999
Q ss_pred hHHHHHhHhccCCCCCccChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecC--CCCCCCcee-hhhHh
Q 036466 305 HLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLG--DLLPGLEVF-NFQIH 381 (727)
Q Consensus 305 ~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~~~-~~~~h 381 (727)
..|+++...||+...|+.+.-. ..+ .+....++....+.|....++-..+ ......... +-..|
T Consensus 309 ~t~~Vl~~AA~iG~~F~l~~La--~l~-----------~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNRFDLDTLA--ALA-----------EDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCccCCHHHHH--HHH-----------hhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 9999999999998777755332 222 1123455666666666555554221 111111222 34778
Q ss_pred hHHHHHHHHH
Q 036466 382 DLMHDLALLV 391 (727)
Q Consensus 382 ~li~~~~~~~ 391 (727)
+.+++.+-..
T Consensus 376 ~~vqqaaY~~ 385 (849)
T COG3899 376 DRVQQAAYNL 385 (849)
T ss_pred HHHHHHHhcc
Confidence 8888777443
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=1.2e-11 Score=130.43 Aligned_cols=312 Identities=13% Similarity=0.105 Sum_probs=178.1
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-cC---CceEEEEecCC
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-HF---ELKIWICVSED 117 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~f---~~~~~~~~~~~ 117 (727)
-.+...|..|+||++++++|..++.....+ .....+.|+|++|+|||++++++++...... .. -..+|+++...
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 334445568999999999999998764322 3456799999999999999999998432111 11 13568888887
Q ss_pred CCHHHHHHHHHHHhcC--CC--CCCCChHHHHHHHHHHhC--CceEEEEEcCCCCCC---hhhHHHHHHhh-cCCC--CC
Q 036466 118 SGKRQIMTKIINSVTG--GN--HGNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNED---PRAWGELKSLL-LGGA--EG 185 (727)
Q Consensus 118 ~~~~~~~~~ll~~l~~--~~--~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~---~~~~~~~~~~l-~~~~--~~ 185 (727)
.+...++..++.++.. .. ....+..+....+.+.+. +++++||||++|... ...+..+.... .... ..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 7888999999999842 11 122344555566666653 467999999998762 11122222211 1111 23
Q ss_pred CEEEEecCchHHHHHH----hhcCCCCceecCCCChhhHHHHHHHhhccCCCC--CChhHHHHHHHHHHHcCCchHHHHH
Q 036466 186 SKILVTTRSNKVALIM----ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQE--KHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 186 ~~iliTsr~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
..+|.++......... ...-....+.+++++.+|..+++..++...... ..+...+.+.+++..+.|.+.....
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 4455555444322111 111112568999999999999999876421111 1222223445566777788754433
Q ss_pred HHhhh-----cCCCChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCC--CCCccChHHHHHHH-
Q 036466 260 VGSLL-----YGSTDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYEFASVHLVQLW- 331 (727)
Q Consensus 260 ~a~~l-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~--~~~~~~~~~l~~~w- 331 (727)
+.... ......-..+.+..... .. -.......+..|+.+.+.++..++.+. .+..+...++...+
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~-~~------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQE-KI------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHH-HH------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 32221 11111111111110000 00 122344567899999988877766432 23345555555532
Q ss_pred --HhcccccCCCCCchHHHHHHHHHHHHHhCCcceecC
Q 036466 332 --MAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 332 --~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 367 (727)
....-+. ...+.....++..|...|++....
T Consensus 319 ~~~~~~~~~-----~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDIGVD-----PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhcCCC-----CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2211111 223566788999999999999753
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.44 E-value=1.3e-11 Score=132.77 Aligned_cols=311 Identities=18% Similarity=0.199 Sum_probs=201.2
Q ss_pred CCCccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 39 REPTHSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 39 ~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
+.+..+|..+...+-|.+.++.|.+. ...|.++|..|+|.||||++.+.+. ....-..+.|+++.+..
T Consensus 9 ~sk~~~P~~~~~~v~R~rL~~~L~~~---------~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~d 76 (894)
T COG2909 9 PSKLVRPVRPDNYVVRPRLLDRLRRA---------NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESD 76 (894)
T ss_pred ccccCCCCCcccccccHHHHHHHhcC---------CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCcc
Confidence 34455666677788898866665542 4679999999999999999998875 22333568899987555
Q ss_pred -CHHHHHHHHHHHhcCC-------------CCCCCChHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHHHHHHhh-cC
Q 036466 119 -GKRQIMTKIINSVTGG-------------NHGNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLL-LG 181 (727)
Q Consensus 119 -~~~~~~~~ll~~l~~~-------------~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~~~~~l-~~ 181 (727)
++..+...++..+... .....+...+.+.+...++ .+++.+||||.+-........-...+ ..
T Consensus 77 ndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~ 156 (894)
T COG2909 77 NDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH 156 (894)
T ss_pred CCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh
Confidence 5556667777666421 1122345556666655554 36899999999887655665544444 44
Q ss_pred CCCCCEEEEecCchHHHHHHhhcCCCCce----ecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 182 GAEGSKILVTTRSNKVALIMATMRGTTGY----NLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 182 ~~~~~~iliTsr~~~~~~~~~~~~~~~~~----~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
..++..+|||||...-.......-..... +.-.|+.+|+.++|.... ..+-.+..++.+.+.++|=+-|+
T Consensus 157 ~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~------~l~Ld~~~~~~L~~~teGW~~al 230 (894)
T COG2909 157 APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG------SLPLDAADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC------CCCCChHHHHHHHhhcccHHHHH
Confidence 56789999999986432211100001112 223489999999998754 12233456789999999999999
Q ss_pred HHHHhhhcCCCChhhHHHHHhccccccccCCCChhH-HHHHhhhcCChhHHHHHhHhccCCCCCccChHHHHHHHHhccc
Q 036466 258 RTVGSLLYGSTDEHDWEYVRDNDIWKLRQAPDDILP-ALRLSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGL 336 (727)
Q Consensus 258 ~~~a~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~l~~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~ 336 (727)
.+++-.++++.....-.. .+.+..+-+.+ +..-.+++||++.|.++..+|+++. |.. .++...
T Consensus 231 ~L~aLa~~~~~~~~q~~~-------~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~~-eL~~~L----- 294 (894)
T COG2909 231 QLIALALRNNTSAEQSLR-------GLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FND-ELCNAL----- 294 (894)
T ss_pred HHHHHHccCCCcHHHHhh-------hccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hhH-HHHHHH-----
Confidence 999988873332211110 11111122222 3445689999999999999999842 221 122111
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhHHHHHHHHHhcCc
Q 036466 337 LQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDLMHDLALLVAKGE 395 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~ 395 (727)
.. ++.+..++++|.+++++-..-+.. ...|+.|+++.+|.+...+.+
T Consensus 295 tg--------~~ng~amLe~L~~~gLFl~~Ldd~----~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 295 TG--------EENGQAMLEELERRGLFLQRLDDE----GQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred hc--------CCcHHHHHHHHHhCCCceeeecCC----CceeehhHHHHHHHHhhhccc
Confidence 11 123668899999999987654332 237999999999998887654
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=9.3e-13 Score=146.00 Aligned_cols=216 Identities=26% Similarity=0.211 Sum_probs=125.4
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|++|++++|.++.+|.. .++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|+.|+++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECC
Confidence 4555555555555555432 2345555555554 3333331 1345555555543 2234431 3456666666
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
+|.+..+|.. ..+|+.|.+++|. +..+|.. ..+|+.|++++|... .+|.. ..+|+.|++++|.-
T Consensus 311 ~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L----- 374 (788)
T PRK15387 311 DNQLASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRL----- 374 (788)
T ss_pred CCccccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccc-----
Confidence 6666654432 2345555555543 2334321 135777777766543 34432 23556666655421
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
..++. ...+|+.|+|++|.. ..+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|.
T Consensus 375 -------~~LP~---l~~~L~~LdLs~N~L-t~LP~l-----~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~Nq- 433 (788)
T PRK15387 375 -------TSLPA---LPSGLKELIVSGNRL-TSLPVL-----PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQ- 433 (788)
T ss_pred -------ccCcc---cccccceEEecCCcc-cCCCCc-----ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCc-
Confidence 11222 235789999998854 445532 36799999999875 456653 3578899999987
Q ss_pred ccccCccCCCCCccCeeeccCCcc
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
++.+|..+..+++|+.|++++||.
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCC
Confidence 457898889999999999999985
No 21
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.41 E-value=8.5e-13 Score=130.15 Aligned_cols=199 Identities=21% Similarity=0.223 Sum_probs=105.2
Q ss_pred eeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH---
Q 036466 51 IIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI--- 127 (727)
Q Consensus 51 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l--- 127 (727)
|+||++++++|.+++.. +..+.++|+|+.|+|||+|++++... .+.....++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~------~~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GPSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hcCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhh-HHHHHHHH
Confidence 79999999999999976 23568999999999999999999984 32221234455554433222 22222
Q ss_pred -------HHHhc---CC-C------CCCCChHHHHHHHHHHhC--CceEEEEEcCCCCCC------hhhHHHHHHhhcC-
Q 036466 128 -------INSVT---GG-N------HGNLDPDRLQKVLRDSLN--GKRYLLVMDDVWNED------PRAWGELKSLLLG- 181 (727)
Q Consensus 128 -------l~~l~---~~-~------~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~------~~~~~~~~~~l~~- 181 (727)
...+. .. . ............+.+.+. +++++|||||++... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11121 11 0 011122223333333332 245999999997655 1122233333333
Q ss_pred -CCCCCEEEEecCchHHHHHH-----hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 182 -GAEGSKILVTTRSNKVALIM-----ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 182 -~~~~~~iliTsr~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
......+|++.......... ........+.+++|+.+++.+++...+... .. .+...+..+++++.+||+|.
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~-~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IK-LPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hc-ccCCHHHHHHHHHHhCCCHH
Confidence 23344455555444443321 112223559999999999999999876433 11 12345667999999999999
Q ss_pred HHHHH
Q 036466 256 AVRTV 260 (727)
Q Consensus 256 al~~~ 260 (727)
.|..+
T Consensus 230 ~l~~~ 234 (234)
T PF01637_consen 230 YLQEL 234 (234)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98753
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=7.8e-15 Score=126.03 Aligned_cols=148 Identities=30% Similarity=0.470 Sum_probs=125.2
Q ss_pred hhhhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCc-ccChhhc
Q 036466 420 SFVTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELE-ELPKDIR 498 (727)
Q Consensus 420 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~ 498 (727)
...++.+..+++|++|++++|.++.+|.+++.+++|+.|++..|+ ...+|..|+.+|.|+.||+.+|+..+ .+|..|-
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 345667788899999999999999999999999999999998887 66788889999999999999877654 5788888
Q ss_pred ccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcccccc
Q 036466 499 YLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKY 570 (727)
Q Consensus 499 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 570 (727)
.+..|+.|+++.|.+..+|+.++++++|+.|.+..| .+-.+|..++.+..|+.|.+.+|.. ..+|..+++
T Consensus 125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl-~vlppel~~ 194 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRL-TVLPPELAN 194 (264)
T ss_pred HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccccee-eecChhhhh
Confidence 899999999999999999999999999999999885 4556888899999999999988765 456665554
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.9e-14 Score=154.32 Aligned_cols=254 Identities=26% Similarity=0.333 Sum_probs=162.5
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
..++-.|++|++++|.+...|..+..+.+|+.|+++.|. +.+.|.+..++.+|++|+|.+ +....+|..+..+.+|+.
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccc
Confidence 334556999999999999999999999999999999876 778888899999999999974 788999999999999999
Q ss_pred eEecccccccccccCCCCCCCcEEeccccCCchhhh-------------------hhccCCCCcCeeecccCcCCCcCcc
Q 036466 506 FVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLF-------------------EDIDQLSVLRSLVVNACPRLNLLPP 566 (727)
Q Consensus 506 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-------------------~~l~~l~~L~~L~l~~~~~~~~~~~ 566 (727)
|+++.|.+...|..+..++.++.+..++|..+..++ ..+..+.+ .|++..|... ..
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~ 193 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VL 193 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hh
Confidence 999999999999888888888888888763222222 11222222 2444444332 11
Q ss_pred ccccCcccceeecccccccccccccc-----ccccCC--CCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEE
Q 036466 567 AMKYLSSLERLIFDECESLSLSLNME-----MKEEGS--HHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLA 639 (727)
Q Consensus 567 ~l~~l~~L~~L~l~~~~~l~~~~~~~-----~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~ 639 (727)
.+..+.+|+.+....+....+...+. ...... .....+...+|+.++++.+ .+..+|+|+ +.|++|+.++
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi--~~~~nle~l~ 270 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWI--GACANLEALN 270 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHH--HhcccceEec
Confidence 12233344444333322111110000 000000 1112223346666666665 345556665 5666777777
Q ss_pred ecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCC
Q 036466 640 IGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEEC 691 (727)
Q Consensus 640 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c 691 (727)
...|.+ ..+|.-+....+|+.|++.+|. ++-+|..++.++.|+.|++..|
T Consensus 271 ~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 271 ANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 766544 4555555566667777766664 4455666666777777777654
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-14 Score=152.30 Aligned_cols=243 Identities=22% Similarity=0.223 Sum_probs=135.7
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
++|+.|+...|.+..+- ......+|++++++++. ...+|++++.+.+|+.++...|.. ..+|..+....+|+.|.+.
T Consensus 219 ~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeec-cccccccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhh
Confidence 44555555555544221 11223456666666665 445566666666666666665433 5566666666666666666
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhh-cc-------------------------CCCCcCeeecccCcCCCc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFED-ID-------------------------QLSVLRSLVVNACPRLNL 563 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~-------------------------~l~~L~~L~l~~~~~~~~ 563 (727)
.|.+..+|...+.++.|++|+|..|+ +..+|.. +. .++.|+.|.+.+|.....
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 66666666666666666666666643 2222211 11 123455555555555444
Q ss_pred CccccccCcccceeeccccccccccccccccccCCCC-CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecC
Q 036466 564 LPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHH-DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGD 642 (727)
Q Consensus 564 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~ 642 (727)
.-..+.+..+|+.|+|++|.-- .++ ........|++|+|+|| .+..+|..+ .+++.|++|...+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~------------~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv--a~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLN------------SFPASKLRKLEELEELNLSGN-KLTTLPDTV--ANLGRLHTLRAHS 439 (1081)
T ss_pred chhhhccccceeeeeecccccc------------cCCHHHHhchHHhHHHhcccc-hhhhhhHHH--HhhhhhHHHhhcC
Confidence 4444555666666666665211 111 22334456666666666 344555555 4566666666665
Q ss_pred CCCccccCccCccccccccccccccccccc-cCccCCCCCccCeeeccCCcch
Q 036466 643 CPNFMALPGSLKDLEALENLVIGICPKLSS-LPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 643 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~~c~~l 694 (727)
|. +..+| .+..++.|+.+|++.|.+..- +|..+ -.|+|++|+++||+.+
T Consensus 440 N~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 440 NQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred Cc-eeech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCccc
Confidence 53 34455 467777788888876655432 23222 2278888888888753
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=9e-15 Score=125.65 Aligned_cols=151 Identities=28% Similarity=0.423 Sum_probs=105.9
Q ss_pred CCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 428 KSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 428 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
.+.+++.|-+++|.+..+|+.+..+.+|+.|++.+|+ +..+|.+++.+++|+.|+++- +.+..+|..|+.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 5667777777777777777777777777777777666 667777777777777777765 34556677777777777777
Q ss_pred ecccccc--cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 508 VTTKQKS--LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 508 l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
++.|.+. .+|..+..++.|+.|.++.| .++.+|..++.+++|+.|.+.+|..+ .+|..++.++.|++|++.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777666 56666666666777777663 55667777777777777777766553 56667777777777766654
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.6e-12 Score=145.09 Aligned_cols=223 Identities=20% Similarity=0.264 Sum_probs=167.1
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEec
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVT 509 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 509 (727)
.+...|+++++.++.+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|.+ ..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECc
Confidence 467899999999998887654 589999999997 557887553 5899999998764 46776553 589999999
Q ss_pred ccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccc
Q 036466 510 TKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSL 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 589 (727)
+|.+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.+ +.+|..+ .++|+.|++++|....
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l--p~sL~~L~Ls~N~Lt~--- 318 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSI-RTLPAHL--PSGITHLNVQSNSLTA--- 318 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCcc-ccCcccc--hhhHHHHHhcCCcccc---
Confidence 999998776553 58999999976 4556776553 5899999999865 4566543 2478889988864321
Q ss_pred cccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccccccccccc
Q 036466 590 NMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 669 (727)
++.. ..++|+.|++++|. +..+|..+ +++|+.|+|++|++ ..+|..+ .++|+.|+|++|.+
T Consensus 319 ---------LP~~--l~~sL~~L~Ls~N~-Lt~LP~~l----~~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 319 ---------LPET--LPPGLKTLEAGENA-LTSLPASL----PPELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred ---------CCcc--ccccceeccccCCc-cccCChhh----cCcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcC
Confidence 1221 23689999999985 45577654 47999999999975 4566544 36899999999974
Q ss_pred ccccCccCCCCCccCeeeccCCcc
Q 036466 670 LSSLPEGMHHLTTLKTLAIEECPA 693 (727)
Q Consensus 670 ~~~l~~~l~~l~~L~~L~l~~c~~ 693 (727)
..+|..+ ..+|+.|++++|..
T Consensus 380 -t~LP~~l--~~sL~~LdLs~N~L 400 (754)
T PRK15370 380 -TNLPENL--PAALQIMQASRNNL 400 (754)
T ss_pred -CCCCHhH--HHHHHHHhhccCCc
Confidence 4677654 24799999999863
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=1.7e-14 Score=149.61 Aligned_cols=276 Identities=18% Similarity=0.106 Sum_probs=179.4
Q ss_pred EEecCCCcc--ccccccCCCCcCcEEeccCCcccc----ccCccccCCCCCCEeecCCCCCC------cccChhhccccc
Q 036466 435 LVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIK----KLPNSICELQSLQTLNLGDCLEL------EELPKDIRYLVS 502 (727)
Q Consensus 435 L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~ 502 (727)
|+|..+.+. .....+..+.+|+.|++++|.+.. .++..+...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 233345567779999999998533 35566777888999999986554 223456777889
Q ss_pred CceeEecccccc-cccccCCCC---CCCcEEeccccCCc----hhhhhhccCC-CCcCeeecccCcCCC----cCccccc
Q 036466 503 LRMFVVTTKQKS-LLESGIGCL---SSLRFLMISNCGNL----EYLFEDIDQL-SVLRSLVVNACPRLN----LLPPAMK 569 (727)
Q Consensus 503 L~~L~l~~~~~~-~~~~~~~~l---~~L~~L~l~~~~~~----~~l~~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~ 569 (727)
|+.|++++|.+. ..+..+..+ ++|++|++++|... ..+...+..+ ++|+.|++++|.... .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999999886 222233333 55999999998654 2344556677 899999999998653 2344566
Q ss_pred cCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCc----chhhhcCCCCcccEEEecCCCC
Q 036466 570 YLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLEL----PQWLLQGSSKTLQTLAIGDCPN 645 (727)
Q Consensus 570 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l----~~~~~~~~~~~L~~L~L~~~~~ 645 (727)
.+++|++|++++|..-.. ....+...+...++|++|+|++|.....- ...+ ..+++|++|++++|.+
T Consensus 163 ~~~~L~~L~l~~n~l~~~-------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~L~~L~ls~n~l 233 (319)
T cd00116 163 ANRDLKELNLANNGIGDA-------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--ASLKSLEVLNLGDNNL 233 (319)
T ss_pred hCCCcCEEECcCCCCchH-------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--cccCCCCEEecCCCcC
Confidence 678899999998743210 00111222334579999999998644222 2222 4678999999999976
Q ss_pred ccccCccC-----ccccccccccccccccc----cccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCcc-CCCCce
Q 036466 646 FMALPGSL-----KDLEALENLVIGICPKL----SSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKI-AHIPQI 715 (727)
Q Consensus 646 ~~~~~~~l-----~~l~~L~~L~l~~~~~~----~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~ 715 (727)
...-...+ ...+.|++|++++|... ..+...+..+++|+.+++++|+.-.+++..... .+... .++..+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~~~~ 312 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNELESL 312 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCchhhc
Confidence 54211111 13479999999999765 223344566789999999998876554332221 22222 455555
Q ss_pred eeccc
Q 036466 716 VFDGE 720 (727)
Q Consensus 716 ~~~~~ 720 (727)
.+.++
T Consensus 313 ~~~~~ 317 (319)
T cd00116 313 WVKDD 317 (319)
T ss_pred ccCCC
Confidence 55543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=6.5e-12 Score=139.39 Aligned_cols=244 Identities=22% Similarity=0.240 Sum_probs=169.8
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
+|.++. ++|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+.|++++|. +..+|.. +.
T Consensus 216 LP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~ 282 (788)
T PRK15387 216 LPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPAL---PS 282 (788)
T ss_pred CCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhc---hh
Confidence 444443 4789999999999988863 5789999999987 5566653 3688999998865 4455543 35
Q ss_pred cCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccc
Q 036466 502 SLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDE 581 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 581 (727)
+|+.|++++|.+..+|. .+++|+.|++++|. +..+|.. ..+|+.|.+++|.. +.+|.. +.+|+.|++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCc-cccCCCC---cccccccccccCcc-cccccc---ccccceEecCC
Confidence 78889999999987775 34789999999974 4455542 24688888888765 346642 35799999998
Q ss_pred cccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCcccccccc
Q 036466 582 CESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALEN 661 (727)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 661 (727)
|.-.. ++. ...+|+.|++++|. +..+|.. ..+|+.|++++|.+. .+|.. .++|+.
T Consensus 352 N~Ls~------------LP~---lp~~L~~L~Ls~N~-L~~LP~l-----~~~L~~LdLs~N~Lt-~LP~l---~s~L~~ 406 (788)
T PRK15387 352 NQLAS------------LPT---LPSELYKLWAYNNR-LTSLPAL-----PSGLKELIVSGNRLT-SLPVL---PSELKE 406 (788)
T ss_pred CccCC------------CCC---CCcccceehhhccc-cccCccc-----ccccceEEecCCccc-CCCCc---ccCCCE
Confidence 63221 222 23578889998875 4456642 357999999998654 56643 368999
Q ss_pred ccccccccccccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccccccc
Q 036466 662 LVIGICPKLSSLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGEMIKS 724 (727)
Q Consensus 662 L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (727)
|++++|.+ ..+|.. +.+|+.|++++|.. + .+.. .+..+.++..|++.+|.+.+
T Consensus 407 LdLS~N~L-ssIP~l---~~~L~~L~Ls~NqL-t----~LP~-sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 407 LMVSGNRL-TSLPML---PSGLLSLSVYRNQL-T----RLPE-SLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred EEccCCcC-CCCCcc---hhhhhhhhhccCcc-c----ccCh-HHhhccCCCeEECCCCCCCc
Confidence 99999874 457743 45788999998763 2 1221 23356677788888887764
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=2e-10 Score=115.63 Aligned_cols=184 Identities=21% Similarity=0.201 Sum_probs=116.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH----H
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRD----S 151 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~----~ 151 (727)
...++|+|++|+||||+++.++..... ..+ .+.|+ +....+..+++..++..++... ...+.......+.+ .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~-~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLET-EGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999874221 111 12233 2333466788888888875442 22332333333333 2
Q ss_pred -hCCceEEEEEcCCCCCChhhHHHHHHhhcCC---CCCCEEEEecCchHHHHHHh-------hcCCCCceecCCCChhhH
Q 036466 152 -LNGKRYLLVMDDVWNEDPRAWGELKSLLLGG---AEGSKILVTTRSNKVALIMA-------TMRGTTGYNLQELPYKDC 220 (727)
Q Consensus 152 -l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~---~~~~~iliTsr~~~~~~~~~-------~~~~~~~~~l~~l~~~~~ 220 (727)
..+++.++|+||+|..+...++.+....... .....|++|.... ...... .......+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2567899999999998766666665433221 2233455555432 221111 011135678999999999
Q ss_pred HHHHHHhhccCCCCC-ChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 221 LSLFMKCAFKVGQEK-HPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 221 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.+++...+...+... .....+.++.|++.++|.|..++.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988775443221 23445788999999999999999998776
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.30 E-value=7.3e-11 Score=121.58 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=149.7
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI 123 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 123 (727)
.|....+|+|+++.++.+..++...... ...++.+.|+|++|+|||++|+.+++. ....+ .++... .......
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHH
Confidence 3445567999999999999888642111 134567899999999999999999873 22211 122111 1111112
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC------------------C-CC
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG------------------G-AE 184 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~------------------~-~~ 184 (727)
+..++..+ +...+|+||+++.......+.+...+.. . .+
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 22222221 2345777777766543222222222211 0 12
Q ss_pred CCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 185 GSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 185 ~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.+-|..|++...+...+.. +....+.+++++.++..+++.+.+...+. ...++.+..|++.|+|.|..+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~s-Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD-RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH-hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 3445556664433322211 12356899999999999999988755433 2345678999999999998776666544
Q ss_pred cCCCChhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHh-HhccCCCCCccChHHHHHHHHhcccccCCCCC
Q 036466 265 YGSTDEHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYEFASVHLVQLWMAHGLLQSPNKN 343 (727)
Q Consensus 265 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~-~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~ 343 (727)
. .|........ -....-......+...+..|++..+..+. .+..|..+ ++....+...+ ..
T Consensus 227 ~------~~a~~~~~~~-I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~---- 288 (328)
T PRK00080 227 R------DFAQVKGDGV-ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE---- 288 (328)
T ss_pred H------HHHHHcCCCC-CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC----
Confidence 2 1111110000 00000011223345566788888888886 55556544 45544443322 11
Q ss_pred chHHHHHHHHHH-HHHhCCcceec
Q 036466 344 EELENIGMRYFK-ELCSRSFFQDL 366 (727)
Q Consensus 344 ~~~~~~~~~~l~-~L~~~~ll~~~ 366 (727)
..++++..++ .|++.+|++..
T Consensus 289 --~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 289 --ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred --CcchHHHHhhHHHHHcCCcccC
Confidence 1234555677 89999999754
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.29 E-value=1e-10 Score=119.84 Aligned_cols=264 Identities=14% Similarity=0.125 Sum_probs=144.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
.+|+|+++.++.|..++...... ...+..++++|++|+|||+||+.+++. ....+ .++....... ...+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~-~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEK-PGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcC-chhHHHHH
Confidence 46999999999999988643211 133556889999999999999999873 22221 1111111111 11122222
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC-------------------CCCCCEEE
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG-------------------GAEGSKIL 189 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~-------------------~~~~~~il 189 (727)
..+ +...++++|+++.......+.+...+.. ..+.+-|.
T Consensus 77 ~~~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 77 TNL----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred Hhc----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 222 2234666777655443333333222210 11244455
Q ss_pred EecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCC
Q 036466 190 VTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTD 269 (727)
Q Consensus 190 iTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~ 269 (727)
.|++...+...... +....+.+++++.++..+++.+.+...+. ...++.+..|++.|+|.|..+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s-R~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~---- 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD-RFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVR---- 206 (305)
T ss_pred ecCCccccCHHHHh-hcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHH----
Confidence 56665433322211 12356799999999999999987754322 23456778999999999987766665431
Q ss_pred hhhHHHHHhcccccc-ccCCCChhHHHHHhhhcCChhHHHHHh-HhccCCCCCccChHHHHHHHHhcccccCCCCCchHH
Q 036466 270 EHDWEYVRDNDIWKL-RQAPDDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYEFASVHLVQLWMAHGLLQSPNKNEELE 347 (727)
Q Consensus 270 ~~~w~~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~~~~~~~~-~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~ 347 (727)
........... ...-......+...+..++..++..+. .++.+..+ ++....+.... | . ..
T Consensus 207 ----~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~------~~ 269 (305)
T TIGR00635 207 ----DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E------DA 269 (305)
T ss_pred ----HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C------Cc
Confidence 11100000000 000011122244557788888888777 44556433 44443333222 1 1 12
Q ss_pred HHHHHHHH-HHHhCCcceec
Q 036466 348 NIGMRYFK-ELCSRSFFQDL 366 (727)
Q Consensus 348 ~~~~~~l~-~L~~~~ll~~~ 366 (727)
..+...++ .|++++++...
T Consensus 270 ~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred chHHHhhhHHHHHcCCcccC
Confidence 34566677 69999999643
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-13 Score=134.18 Aligned_cols=261 Identities=18% Similarity=0.167 Sum_probs=153.9
Q ss_pred cceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccC-hhhcccccCceeEe
Q 036466 431 SLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELP-KDIRYLVSLRMFVV 508 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 508 (727)
....++|..|.|..+|+ .|+.+++|+.|+|++|.+...-|.+|..+++|.+|-+.+++.+..+| ..|..+..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45566677777776654 46667777777777776544556666667666666555555555555 35666677777766
Q ss_pred ccccccc-ccccCCCCCCCcEEeccccCCchhhhh-hccCCCCcCeeecccCcCCC------------cCccccccCccc
Q 036466 509 TTKQKSL-LESGIGCLSSLRFLMISNCGNLEYLFE-DIDQLSVLRSLVVNACPRLN------------LLPPAMKYLSSL 574 (727)
Q Consensus 509 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L 574 (727)
.-|++.. ....+..+++|..|.+..|. ...++. .+..+..++.+.+..|.+.- ..|..++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6666652 22345566666666666642 233333 45555555555555443211 011111111111
Q ss_pred ceeecccccccccc--------------ccccc-cccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEE
Q 036466 575 ERLIFDECESLSLS--------------LNMEM-KEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLA 639 (727)
Q Consensus 575 ~~L~l~~~~~l~~~--------------~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~ 639 (727)
....+.+...-... ..... .+.-.-...+..+++|+.|+|++|.....-+.++ .....+++|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh--cchhhhhhhh
Confidence 11111110000000 00000 0111111235577899999999997666666666 5677899999
Q ss_pred ecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCcch
Q 036466 640 IGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECPAL 694 (727)
Q Consensus 640 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~~l 694 (727)
|..|.+...-...|.++..|+.|+|.+|.+..--|..+..+.+|.+|.+-.||--
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9998765544556889999999999999888777778888899999999777754
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.27 E-value=7.5e-10 Score=120.16 Aligned_cols=312 Identities=10% Similarity=0.012 Sum_probs=168.9
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH---hcC--CceEEEEecCCCCH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE---EHF--ELKIWICVSEDSGK 120 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f--~~~~~~~~~~~~~~ 120 (727)
..|..+.|||+|+++|..+|.....+. ....++.|+|++|+|||++++.|....... ... -.++|++|....+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 445789999999999999997754332 234577899999999999999998753221 112 23568888887788
Q ss_pred HHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHhC---CceEEEEEcCCCCCChhhHHHHHHhhcC-CCCCCEEEE--ecC
Q 036466 121 RQIMTKIINSVTGGNH-GNLDPDRLQKVLRDSLN---GKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSKILV--TTR 193 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~-~~~~~~~~~~~l~~~l~---~~~~LlvlDd~~~~~~~~~~~~~~~l~~-~~~~~~ili--Tsr 193 (727)
..++..+..++....+ ......+....+...+. ....+||||++|......-+.+...+.. ...+++|+| ++.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 8899999988854332 23334445555555442 2346999999976542222223322321 223455444 343
Q ss_pred chHH----HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCC-ChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCC
Q 036466 194 SNKV----ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEK-HPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGST 268 (727)
Q Consensus 194 ~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~ 268 (727)
...+ ...+........+..++++.++..+++..++....... ....+-+|+.++...|-.-.||.++-.+.....
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 2111 11121111224577899999999999999885432111 222333334444444555666666554443211
Q ss_pred Ch-hhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCCCC---CccChHHHHHHH--HhcccccCCCC
Q 036466 269 DE-HDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKD---YEFASVHLVQLW--MAHGLLQSPNK 342 (727)
Q Consensus 269 ~~-~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~---~~~~~~~l~~~w--~~~~~~~~~~~ 342 (727)
.. -.-+.+.... .. .....+.-....||.+.|-++..+....+. ..+....+.... +++..-...+.
T Consensus 991 gskVT~eHVrkAl-ee------iE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv 1063 (1164)
T PTZ00112 991 GQKIVPRDITEAT-NQ------LFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM 1063 (1164)
T ss_pred CCccCHHHHHHHH-HH------HHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC
Confidence 10 0000000000 00 011123345577899888877755543222 235554443332 22200000111
Q ss_pred CchHHHHHHHHHHHHHhCCcceec
Q 036466 343 NEELENIGMRYFKELCSRSFFQDL 366 (727)
Q Consensus 343 ~~~~~~~~~~~l~~L~~~~ll~~~ 366 (727)
....+ ....++.+|...|+|-..
T Consensus 1064 ~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1064 CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CCcHH-HHHHHHHHHHhcCeEEec
Confidence 11223 566677888888877653
No 34
>PF05729 NACHT: NACHT domain
Probab=99.25 E-value=6.2e-11 Score=109.86 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=92.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceEEEEecCCCCHH---HHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKIWICVSEDSGKR---QIMTKIINSVTGGNHGNLDPDRLQKVLR 149 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~~~~~~~~l~ 149 (727)
|+++|+|.+|+||||++++++........ +...+|.......... .+...+..+.... ...... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---IAPIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc---hhhhHH---HHH
Confidence 57999999999999999999986443332 3455677665544332 2333333333211 111111 222
Q ss_pred HHh-CCceEEEEEcCCCCCChhh-------HHHHHH-hhcC-CCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhh
Q 036466 150 DSL-NGKRYLLVMDDVWNEDPRA-------WGELKS-LLLG-GAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKD 219 (727)
Q Consensus 150 ~~l-~~~~~LlvlDd~~~~~~~~-------~~~~~~-~l~~-~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~ 219 (727)
..+ ..++++||||++|+..... +..+.. .+.. ..++++++||+|................+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 4689999999998764311 223333 3333 36789999999998775433333334679999999999
Q ss_pred HHHHHHHhh
Q 036466 220 CLSLFMKCA 228 (727)
Q Consensus 220 ~~~l~~~~~ 228 (727)
..+++.+++
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998875
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=1.2e-11 Score=120.68 Aligned_cols=277 Identities=16% Similarity=0.158 Sum_probs=184.8
Q ss_pred eEEEecCCCccccccccCCCCcCcEEeccCCccccccC-ccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecc-
Q 036466 433 RVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTT- 510 (727)
Q Consensus 433 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 510 (727)
-.++.++..+..+|..+. ..-..+.|..|. ++.+| .+|+.+++|+.|||+.|.+...-|..|..+.+|..|-+.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 355666777777777654 345678888887 56666 5788999999999999888888889999999998887776
Q ss_pred cccccccc-cCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCcc-ccccCcccceeecccccccccc
Q 036466 511 KQKSLLES-GIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPP-AMKYLSSLERLIFDECESLSLS 588 (727)
Q Consensus 511 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~~ 588 (727)
|+++.+|. .++.+..|+.|.+.-|...-.....+..+++|+.|.+.+|.. ..++. .+..+.+++.+++.-++..-+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCcccccc
Confidence 89987775 578888898888876544444457788999999999998764 34444 6677788888888766522111
Q ss_pred --------ccccc-cccC---------------CCCCCCCCCc--eeeEEEecCCCCCCCcchhhhcCCCCcccEEEecC
Q 036466 589 --------LNMEM-KEEG---------------SHHDRKNVGS--HLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGD 642 (727)
Q Consensus 589 --------~~~~~-~~~~---------------~~~~~~~~~~--~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~ 642 (727)
..+.. ...| .+......+. .+.+--.+.|......|..- ...+|+|++|+|++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c-f~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC-FKKLPNLRKLNLSN 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH-HhhcccceEeccCC
Confidence 00000 0001 1111111111 22111222332333333322 26789999999999
Q ss_pred CCCccccCccCccccccccccccccccccccC-ccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeeccc
Q 036466 643 CPNFMALPGSLKDLEALENLVIGICPKLSSLP-EGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFDGE 720 (727)
Q Consensus 643 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (727)
|.+...-+.+|.+...+++|.|..|++- .+. -.+.+++.|+.|++++|..-+ +...-+.....+..+++.+|
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~-----~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITT-----VAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEE-----EecccccccceeeeeehccC
Confidence 9887777888999999999999998743 332 346789999999999987532 23333444455555555543
No 36
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-07 Score=97.32 Aligned_cols=304 Identities=17% Similarity=0.125 Sum_probs=177.4
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..|..+.+|+++++++...|.+.-.+ ..+.-+.|+|.+|+|||+.++.++........-..++|++|....+.-+++.
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34445999999999999998877544 3344599999999999999999999432222222278999999999999999
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCC--ceEEEEEcCCCCCChhhHHHHHHhhcCCC-CCCEE--EEecCchHHHHH
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNG--KRYLLVMDDVWNEDPRAWGELKSLLLGGA-EGSKI--LVTTRSNKVALI 200 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-~~~~i--liTsr~~~~~~~ 200 (727)
.++++++..+..+....+....+.+.+.. +.+++|+|+++.......+.+...+.... ..++| |..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 99999986666667777888888887754 78999999997754322233444444322 23443 333333322222
Q ss_pred H----hhcCCCCceecCCCChhhHHHHHHHhhccC---CCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhc--CC--CC
Q 036466 201 M----ATMRGTTGYNLQELPYKDCLSLFMKCAFKV---GQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLY--GS--TD 269 (727)
Q Consensus 201 ~----~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~--~~--~~ 269 (727)
. ...-....+..++-+.+|-..++..++... +........-.|...++..|-.-.|+..+-.+.. +. ..
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCC
Confidence 1 122223458899999999999998877432 2222223333333333333344455554433321 10 00
Q ss_pred hhhHHHHHhccccccccCCCChhHHHHHhhhcCChhHHHHHhHhccCCCCCccChHHHHH--HHHhcccccCCCCCchHH
Q 036466 270 EHDWEYVRDNDIWKLRQAPDDILPALRLSYDQLPPHLKQCFAYCSIFPKDYEFASVHLVQ--LWMAHGLLQSPNKNEELE 347 (727)
Q Consensus 270 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~la~f~~~~~~~~~~l~~--~w~~~~~~~~~~~~~~~~ 347 (727)
...-+..... ...--.....-.+..|+.+.+-.+..++... .++....+-. .++.+.+-. .+
T Consensus 252 ~v~~~~v~~a-------~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~-------~~ 315 (366)
T COG1474 252 KVSEDHVREA-------QEEIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT-------SQ 315 (366)
T ss_pred CcCHHHHHHH-------HHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc-------hH
Confidence 0000000000 0001112334457888888887776666554 3333333322 222221111 23
Q ss_pred HHHHHHHHHHHhCCcceecC
Q 036466 348 NIGMRYFKELCSRSFFQDLG 367 (727)
Q Consensus 348 ~~~~~~l~~L~~~~ll~~~~ 367 (727)
.....++.+|...+++....
T Consensus 316 ~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 316 RRFSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHHHHHhcCeEEeee
Confidence 34556788888888887543
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.4e-11 Score=119.36 Aligned_cols=108 Identities=25% Similarity=0.187 Sum_probs=57.5
Q ss_pred cCCCcceEEEecCCCcccccc--ccCCCCcCcEEeccCCcccc--ccCccccCCCCCCEeecCCCCCCcccChh-hcccc
Q 036466 427 SKSKSLRVLVLTNSAIEVLPR--KMGNLKQLRHLDLSGNRKIK--KLPNSICELQSLQTLNLGDCLELEELPKD-IRYLV 501 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~ 501 (727)
++++.|+.+.|.++.+...+. -...|++++.|++++|-+.. .+-.....+|+|+.|+++.|......... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888777765442 34557777777777764332 12233445677777777766544322111 11344
Q ss_pred cCceeEecccccc--cccccCCCCCCCcEEecccc
Q 036466 502 SLRMFVVTTKQKS--LLESGIGCLSSLRFLMISNC 534 (727)
Q Consensus 502 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~ 534 (727)
.|+.|.++.|.++ .+...+..+|+|+.|.+..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 5555555555554 22223334455555555544
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=4.1e-09 Score=104.38 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=107.5
Q ss_pred CCCCCceeecchhH---HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 45 FVRPSDIIGRYEDG---EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 45 ~~~~~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
|..-.++||-+..+ .-|.+++.. +......+||+||+||||||+-++. ..... |..++...+-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~-----f~~~sAv~~gv 86 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA------GHLHSMILWGPPGTGKTTLARLIAG--TTNAA-----FEALSAVTSGV 86 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc------CCCceeEEECCCCCCHHHHHHHHHH--hhCCc-----eEEeccccccH
Confidence 33344566655544 335555544 4567788999999999999998887 33333 34444433333
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE--ecCchHHHH
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVAL 199 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili--Tsr~~~~~~ 199 (727)
.-+++++..- -.....+++.+|++|+++.-+..+.+.+...+ -.|.-++| ||.++...-
T Consensus 87 kdlr~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~l 147 (436)
T COG2256 87 KDLREIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFEL 147 (436)
T ss_pred HHHHHHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeee
Confidence 3333333332 01122378999999999876654444443333 34665555 777664433
Q ss_pred HHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCC----hhHHHHHHHHHHHcCCchH
Q 036466 200 IMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKH----PNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 200 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~i~~~~~g~Pl 255 (727)
.-.......++.+++|+.+|..+++.+........-. ...+++.+.++..++|--.
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 2222334488999999999999999984432222111 1234567788888888553
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.00 E-value=9.2e-12 Score=122.60 Aligned_cols=300 Identities=17% Similarity=0.175 Sum_probs=183.4
Q ss_pred CCeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCccc---cccccCCCCcCcEEeccCCcccccc-Cc-cccCCC
Q 036466 403 GRVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIEV---LPRKMGNLKQLRHLDLSGNRKIKKL-PN-SICELQ 477 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~l~ 477 (727)
++++.+.+.. ........+......|++++.|++.++.-.. +-..-..|++|++|++..|..++.. -+ ....++
T Consensus 138 g~lk~LSlrG-~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRG-CRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccc-cccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4555555542 1223334455556678888888887776221 1111235788888888887655421 12 233578
Q ss_pred CCCEeecCCCCCCcc--cChhhcccccCceeEecccccc---cccccCCCCCCCcEEeccccCCchhhh--hhccCCCCc
Q 036466 478 SLQTLNLGDCLELEE--LPKDIRYLVSLRMFVVTTKQKS---LLESGIGCLSSLRFLMISNCGNLEYLF--EDIDQLSVL 550 (727)
Q Consensus 478 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~l~--~~l~~l~~L 550 (727)
+|.+|++++|.-+.. +-...+.+..++.+.+.+|.-. .+...-..+.-+..+++..|..++... ..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888888888865543 2233455555666655543221 111222344445566666776554322 223346678
Q ss_pred CeeecccCcCCCcCc-ccc-ccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhh
Q 036466 551 RSLVVNACPRLNLLP-PAM-KYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLL 628 (727)
Q Consensus 551 ~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 628 (727)
+.|..++|...+..+ ..+ .++.+|+.|-++.|..++.. .+.....++..|+.|++..|....+....-.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---------GFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---------hhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 888888877654332 222 35678888888888765533 2234455777888888888866555533334
Q ss_pred cCCCCcccEEEecCCCCcccc-----CccCccccccccccccccccccc-cCccCCCCCccCeeeccCCcchhhhcCCCC
Q 036466 629 QGSSKTLQTLAIGDCPNFMAL-----PGSLKDLEALENLVIGICPKLSS-LPEGMHHLTTLKTLAIEECPALCERCKPLT 702 (727)
Q Consensus 629 ~~~~~~L~~L~L~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 702 (727)
..+||.|+.|.|+.|..++.. ..+-..+..|+.+.|++|+.+.+ .-..+..+++|+.+++.+|..+.+-.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~---- 443 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA---- 443 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh----
Confidence 467889999999988776643 33345677888999999988754 33556778999999999888764431
Q ss_pred CCCCCccCCCCceeec
Q 036466 703 GEDWPKIAHIPQIVFD 718 (727)
Q Consensus 703 ~~~~~~~~~~~~~~~~ 718 (727)
+-.-..|+|+++++
T Consensus 444 --i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 444 --ISRFATHLPNIKVH 457 (483)
T ss_pred --hHHHHhhCccceeh
Confidence 11344688888775
No 40
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=3.1e-08 Score=103.27 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=117.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-.+++|.+..++.|.+.+... .-++.+.++|++|+||||+|+.++....-...+.. ..+..-....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHH
Confidence 33457899999999999988762 34567899999999999999999874211110000 0000000011
Q ss_pred HHHHHh----cCCCC-CCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 126 KIINSV----TGGNH-GNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 126 ~ll~~l----~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
++.... ..-+. .....++..+ +.+.+ .+++-++|+|+++......++.+...+-...+.+++|++|.+.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 111000 00000 0011222111 11111 2345699999999888777778888877666677777776543
Q ss_pred H-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 196 K-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 196 ~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
. +.... ......+++.+++.++..+++...+...+.. ..++.+..|++.++|.|..+..
T Consensus 160 ~~l~~tI--~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 160 EKIPKTI--LSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HhhhHHH--HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 22221 1223789999999999999998876544322 2346678899999998864433
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=1.3e-08 Score=108.20 Aligned_cols=184 Identities=15% Similarity=0.177 Sum_probs=111.3
Q ss_pred CCCCceeecchhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 46 VRPSDIIGRYEDGEK---IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
....+|+|++..+.. |.+++.. .....+.++|++|+||||+|+.++.. .... |+.++......+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~ 75 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVK 75 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHH
Confidence 344579999988776 8887765 34557889999999999999999873 2222 233322211112
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE--ecCchHHHH
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRD-SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVAL 199 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili--Tsr~~~~~~ 199 (727)
..++++... .. ...+++.+|+||+++.....+.+.+...+.. +..++| ||.+....-
T Consensus 76 ~ir~ii~~~-----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l 135 (413)
T PRK13342 76 DLREVIEEA-----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEV 135 (413)
T ss_pred HHHHHHHHH-----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhc
Confidence 222222222 11 1134678999999988776555556555543 444444 344332211
Q ss_pred HHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 200 IMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 200 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
..........+.+.+++.++..+++.+.+............+....+++.++|.+..+.-+..
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111122337899999999999999988653321110123356678899999999976654443
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.95 E-value=1.3e-08 Score=94.21 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=106.6
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
...|..-.+|+|-+..++.+.-++.... .+++....+.+||+||+||||||+-+++ +....| ....+....-.
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~----~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF----KITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E----EEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe----EeccchhhhhH
Confidence 4445566789999999998876664321 1124567899999999999999998887 333333 12111111111
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC--------CCCCE------
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG--------AEGSK------ 187 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~--------~~~~~------ 187 (727)
..+..++..+ +++-+|++|+++.....+.+.+...+-+. +++++
T Consensus 90 ~dl~~il~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 90 GDLAAILTNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp HHHHHHHHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred HHHHHHHHhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 2222222222 23457888999988766666666555431 33222
Q ss_pred -----EEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 188 -----ILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 188 -----iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
|=-|||...+...+.. +..-...++-.+.+|-.+++.+.+..-+ .+-..+.+.+|++.+.|-|--..-+..
T Consensus 148 ~~FTligATTr~g~ls~pLrd-RFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD-RFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT-TSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh-hcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 3357776544332211 1112347999999999999988663322 344567889999999999988777776
Q ss_pred hhcC
Q 036466 263 LLYG 266 (727)
Q Consensus 263 ~l~~ 266 (727)
.+++
T Consensus 224 rvrD 227 (233)
T PF05496_consen 224 RVRD 227 (233)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 6643
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=4.7e-08 Score=106.17 Aligned_cols=202 Identities=13% Similarity=0.136 Sum_probs=122.0
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-.+++|.+..++.|.+++... .-.+.++++|+.|+||||+|+.+++...-....+. ..| +.-.....
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PC----G~C~sCr~ 81 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPC----GVCRACRE 81 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCC----cccHHHHH
Confidence 3457899999999999998762 34567789999999999999988874211111000 000 00001111
Q ss_pred HHHH----hc-CCCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 127 IINS----VT-GGNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 127 ll~~----l~-~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
+... +. .........+++.+.+.... .++.-++|||+++......++.++..|-...+..++|++|.+...
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1000 00 00001112222222222211 234458889999999887888888877666667888888776432
Q ss_pred HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch-HHHHHHHhhh
Q 036466 198 ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP-LAVRTVGSLL 264 (727)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~~l 264 (727)
.. .........+.++.++.++..+.+.+.....+. ....+.+..|++.++|.. -++.++-..+
T Consensus 162 Ip-~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 162 IP-VTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred cc-chhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 111223378999999999999999887644332 234567789999999866 4665544433
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.94 E-value=2.2e-08 Score=97.90 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG 133 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~ 133 (727)
.+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++. ........+|+++...... ...++
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~~~----- 85 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPEVL----- 85 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHHHH-----
Confidence 45577777777643 34568999999999999999999874 3333344567766432110 01111
Q ss_pred CCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChh-h-HHHHHHhhcC-CCCCCEEEEecCchHHH------HHHhhc
Q 036466 134 GNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPR-A-WGELKSLLLG-GAEGSKILVTTRSNKVA------LIMATM 204 (727)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-~-~~~~~~~l~~-~~~~~~iliTsr~~~~~------~~~~~~ 204 (727)
..+.+ .-+|||||++..... . ...+...+.. ...+.++|+|++..... ......
T Consensus 86 ----------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 86 ----------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ----------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11222 238999999876432 1 3334433322 12234788888753211 111111
Q ss_pred CCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 205 RGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 205 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.....+++++++.++...+++......+. ....+.+..+.+.+.|+|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 12367999999999999999876533322 2234667888889999999888775544
No 45
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=7.1e-08 Score=103.70 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=119.2
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-.+++|.+..++.|.+++... .-.+.+.++|++|+||||+|+.+++...-....... .++.-...+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~-------pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST-------PCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC-------CCccCHHHH
Confidence 34457899999999999999762 345788999999999999999888742111100000 000001111
Q ss_pred HHHHHhcC-----CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH
Q 036466 126 KIINSVTG-----GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 126 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~ 196 (727)
.+...-.. ........+++.+.+... ..++.-++|||+++.......+.+...+-...++.++|++|.+..
T Consensus 80 ~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 11100000 000011222222222211 124556899999999887788888888776656777887776543
Q ss_pred HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 197 VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
... .........+.+++++.++..+++.+.+...+.. ...+.+..|++.++|.+..+.
T Consensus 160 kIp-~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 160 KLP-ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhh-HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 221 1111234889999999999999998877554432 334667889999999774443
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-10 Score=115.04 Aligned_cols=209 Identities=21% Similarity=0.184 Sum_probs=93.2
Q ss_pred CCCCcCcEEeccCCccccccC--ccccCCCCCCEeecCCCCCCcc--cChhhcccccCceeEeccccccccccc--CCCC
Q 036466 450 GNLKQLRHLDLSGNRKIKKLP--NSICELQSLQTLNLGDCLELEE--LPKDIRYLVSLRMFVVTTKQKSLLESG--IGCL 523 (727)
Q Consensus 450 ~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~l 523 (727)
+++.+|+...+..+. .+..+ .....|++++.|||+.|-+... +......+++|+.|+++.|.+..+... -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 344555555555544 22222 1233455666666655433322 223445556666666666655522221 1234
Q ss_pred CCCcEEeccccCCc-hhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCC
Q 036466 524 SSLRFLMISNCGNL-EYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDR 602 (727)
Q Consensus 524 ~~L~~L~l~~~~~~-~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 602 (727)
+.|+.|.++.|... ..+...+..+|+|+.|.+..|............++.|++|+|+++..++.. ....
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~----------~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD----------QGYK 266 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc----------cccc
Confidence 55566666665422 333344445566666666555322221222233445555555554433211 0111
Q ss_pred CCCCceeeEEEecCCCCCC-Ccchh---hhcCCCCcccEEEecCCCC--ccccCccCccccccccccccccccc
Q 036466 603 KNVGSHLRTLYVARLTPLL-ELPQW---LLQGSSKTLQTLAIGDCPN--FMALPGSLKDLEALENLVIGICPKL 670 (727)
Q Consensus 603 ~~~~~~L~~L~L~~~~~~~-~l~~~---~~~~~~~~L~~L~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 670 (727)
....+.|+.|.++.|...+ ..|.. --...+|+|++|++..|++ +.++. .+..+++|+.|.+..|++.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccchhhhhhccccccc
Confidence 2223334444443331111 00100 0013456777777777655 22222 2445566666666666554
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.94 E-value=1.3e-07 Score=102.57 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=145.0
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
|..-.+++|.++.++.|.+|+.....+ ...+.+.|+|++|+||||+|+.+++.. .|+ ++.++.+...+ .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~-~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRT-ADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEccccccc-HHHH
Confidence 344467999999999999998764322 336799999999999999999998742 122 22333333222 2233
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh----hhHHHHHHhhcCCCCCCEEEEecCchHHHHH
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP----RAWGELKSLLLGGAEGSKILVTTRSNKVALI 200 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~ 200 (727)
..++....... .....++-+||||+++.... .....+...+.. .+..+|+|+.+......
T Consensus 82 ~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 33333321110 00113567999999987532 334555555543 33446666644211111
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhcc
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDND 280 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~ 280 (727)
-........+.+.+++.++...++.+.+...+.. ...+++..|++.++|....+......+........-..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~- 221 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL- 221 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh-
Confidence 0111233679999999999999998877554433 234678999999999776665444434322211111111110
Q ss_pred ccccccCCCChhHHHHHhhhc-CChhHHHHHhHhccCCCCCccChHHHHHHHHhcccccC
Q 036466 281 IWKLRQAPDDILPALRLSYDQ-LPPHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQS 339 (727)
Q Consensus 281 ~~~~~~~~~~~~~~l~~~~~~-L~~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~ 339 (727)
...+...+++.++...+.. -.......+.. ... ....+-.|+.+.+...
T Consensus 222 --~~~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~-~~~~i~~~l~en~~~~ 271 (482)
T PRK04195 222 --GRRDREESIFDALDAVFKARNADQALEASYD-------VDE-DPDDLIEWIDENIPKE 271 (482)
T ss_pred --hcCCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccC-CHHHHHHHHHhccccc
Confidence 0023345677777766652 22222222211 112 2346778998888664
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-10 Score=111.91 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=84.7
Q ss_pred hhhhhcCCCcceEEEecCCCcc-----ccccccCCCCcCcEEeccCCcccc----ccCcc-------ccCCCCCCEeecC
Q 036466 422 VTSCISKSKSLRVLVLTNSAIE-----VLPRKMGNLKQLRHLDLSGNRKIK----KLPNS-------ICELQSLQTLNLG 485 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~-------~~~l~~L~~L~l~ 485 (727)
.-+.+..+.+++.+++++|.+. .+.+.+.+.++|+..+++.- +.+ .+|+. +-.+++|++|+||
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3344556777777777777765 23344555666777766542 122 33332 3345677777777
Q ss_pred CCCCCcccC----hhhcccccCceeEeccccccc--------------ccccCCCCCCCcEEeccccCC----chhhhhh
Q 036466 486 DCLELEELP----KDIRYLVSLRMFVVTTKQKSL--------------LESGIGCLSSLRFLMISNCGN----LEYLFED 543 (727)
Q Consensus 486 ~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~----~~~l~~~ 543 (727)
.|.+....+ ..+.++.+|++|.+.+|.++. .......-++|+++....|.. -..+...
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 776654433 234566777777777776651 111233445566665555421 1223344
Q ss_pred ccCCCCcCeeecccCcCCC----cCccccccCcccceeecccc
Q 036466 544 IDQLSVLRSLVVNACPRLN----LLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 544 l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 582 (727)
+..++.|+.+.++.|..-. .+...+.++++|+.|++.+|
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 5555666666665554321 11223344555555555443
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=2e-10 Score=110.94 Aligned_cols=235 Identities=18% Similarity=0.168 Sum_probs=159.0
Q ss_pred CCeeEEEeccCCCcc-hhhhhhhhhcCCCcceEEEecCCCcc----cccc-------ccCCCCcCcEEeccCCccccccC
Q 036466 403 GRVRTILFPIDDERT-SQSFVTSCISKSKSLRVLVLTNSAIE----VLPR-------KMGNLKQLRHLDLSGNRKIKKLP 470 (727)
Q Consensus 403 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~-------~~~~l~~L~~L~l~~~~~~~~~~ 470 (727)
..+..+.+.....+. -..++..++.+-+.|+..++++-.-. .+|+ .+..+++|++|+|+.|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 445666666544442 33456778888899999999864422 3333 35667899999999998654433
Q ss_pred c----cccCCCCCCEeecCCCCCCccc-------------ChhhcccccCceeEeccccccc-----ccccCCCCCCCcE
Q 036466 471 N----SICELQSLQTLNLGDCLELEEL-------------PKDIRYLVSLRMFVVTTKQKSL-----LESGIGCLSSLRF 528 (727)
Q Consensus 471 ~----~~~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~ 528 (727)
. .+..+..|+.|.|.+|.....- .+...+-++|+.+....|++.. +...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 3 3556889999999987654321 1234566799999999999883 2335677789999
Q ss_pred EeccccCCc----hhhhhhccCCCCcCeeecccCcCCC----cCccccccCcccceeeccccccccccccccccccCCCC
Q 036466 529 LMISNCGNL----EYLFEDIDQLSVLRSLVVNACPRLN----LLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHH 600 (727)
Q Consensus 529 L~l~~~~~~----~~l~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 600 (727)
+.+..|..- ..+...+.+|++|+.|++.+|.+.. .+...+..+++|++|.+++|--
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll---------------- 253 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL---------------- 253 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc----------------
Confidence 999997532 3456778999999999999998754 2444566677888888887711
Q ss_pred CCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc----cCccCcccccccccccccccc
Q 036466 601 DRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA----LPGSLKDLEALENLVIGICPK 669 (727)
Q Consensus 601 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 669 (727)
.+.+...+...+. ...|+|+.|.+.+|.+... +..++...+.|+.|+|++|.+
T Consensus 254 ---------------~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ---------------ENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ---------------ccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0112222222332 3478888888888876542 333455678888888888876
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.91 E-value=3.1e-09 Score=100.40 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=38.6
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
.|+||++++++|...+.. . .+...+.+.|+|++|+|||+|+++++...... ...++.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~--~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-A--QSGSPRNLLLTGESGSGKTSLLRALLDRLAER--GGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-T--SS-----EEE-B-TTSSHHHHHHHHHHHHHHH--T--EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHH-H--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEEEecc
Confidence 489999999999999962 2 22557899999999999999999999854333 222444455444
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.90 E-value=5.1e-08 Score=101.74 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=116.4
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH-HHHH-
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK-RQIM- 124 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~- 124 (727)
....++|++..++.|..++.. +..+.+.++|++|+||||+|+.+++...-...-...+++++...... ....
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhh
Confidence 345789999999999998865 23346889999999999999998874211110112345544321100 0000
Q ss_pred --HHHHHHhcCCCC-CCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH
Q 036466 125 --TKIINSVTGGNH-GNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 125 --~~ll~~l~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~ 196 (727)
......+..... .....+...+.+.... .+.+-+||+||++.........+...+....+.+++|+|+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000000 0001111111121111 12345899999988765555566666655445677887775432
Q ss_pred -HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 197 -VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 197 -~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
....+ ......+.+.+++.++..+++.+.+...+.. -..+.+..+++.++|.+-.+.....
T Consensus 167 ~~~~~L--~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 167 KLIPPI--RSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hCchhh--cCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11111 1223678999999999999998876544432 2346788999999998766654443
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.89 E-value=5.1e-09 Score=92.56 Aligned_cols=118 Identities=24% Similarity=0.306 Sum_probs=82.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHh---cCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEE---HFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS 151 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 151 (727)
..+++.|+|++|+|||++++++++...... .-..++|+.+....+..++...++.+++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999998532211 13456799998887899999999999976655556777888888888
Q ss_pred hCCce-EEEEEcCCCCC-ChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 152 LNGKR-YLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 152 l~~~~-~LlvlDd~~~~-~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
++..+ .+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 87644 59999999876 5544555544333 567778777654
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1e-10 Score=119.67 Aligned_cols=190 Identities=30% Similarity=0.397 Sum_probs=112.4
Q ss_pred cEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccccccCCCCCCCcEEeccccC
Q 036466 456 RHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCG 535 (727)
Q Consensus 456 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 535 (727)
...+++.|+ ...+|..++.+-.|+.+.+.. +....+|..+.++..|++|+++.|+++..|..++.|+ |+.|-+++ +
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-N 153 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-N 153 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-C
Confidence 344555555 345555555555565555544 2334455566666666666666666666665555555 55555555 3
Q ss_pred CchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEec
Q 036466 536 NLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVA 615 (727)
Q Consensus 536 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 615 (727)
.++.+|..++.++.|..|+.+.|.. ..+|..++++.+|+.|.++.|
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn--------------------------------- 199 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRN--------------------------------- 199 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhh---------------------------------
Confidence 4455666666666666666665543 345555666666665555543
Q ss_pred CCCCCCCcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccccccCcc---CCCCCccCeeeccCC
Q 036466 616 RLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEG---MHHLTTLKTLAIEEC 691 (727)
Q Consensus 616 ~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~---l~~l~~L~~L~l~~c 691 (727)
.+..+|..+ ..+ .|..||+|+| .+..+|.+|.+|..|++|-|.+|++. +-|.. -+...-.++|++.-|
T Consensus 200 ---~l~~lp~El--~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 200 ---HLEDLPEEL--CSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---hhhhCCHHH--hCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 334455555 333 4778888755 46677777888888888888877743 33322 234466777777777
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=7.2e-08 Score=106.90 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=119.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-------------------C
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-------------------F 106 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------f 106 (727)
..-..+||-+..++.|.+++... .-.+.+.++|++|+||||+|+.+++...-... |
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 33457999999999999998762 34567799999999999999999974211111 1
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCC
Q 036466 107 ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGS 186 (727)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~ 186 (727)
..+++++......+ +.++++...+. ..-..++.-++|||+++.......+.++..+-......
T Consensus 88 ~DviEidAas~~kV-DdIReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 88 VDLIEVDAASRTKV-DDTRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHV 150 (944)
T ss_pred ceEEEeccccccCH-HHHHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCe
Confidence 11111111100011 11122222210 01113566799999999998888888888776655667
Q ss_pred EEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 187 KILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 187 ~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
++|++|.+.. +...+ ..+...+.+++++.++..+++.+.+...+. ....+.+..|++.++|.|.-+..+
T Consensus 151 rFILaTTe~~kLl~TI--lSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 151 KFLLATTDPQKLPVTV--LSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEEECCCchhchHHH--HHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7776665533 22111 112378999999999999999887644322 234467889999999988644433
No 55
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=2.6e-07 Score=95.66 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=115.2
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe--cCCCCHH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV--SEDSGKR 121 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~--~~~~~~~ 121 (727)
.|..-.+++|+++.++.+..++... ..+.+.++|++|+||||+++.++.... ...+. ..++.+ ......
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~- 82 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI- 82 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch-
Confidence 3344466899999999999998652 234579999999999999999987421 11121 122332 221111
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHH
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALI 200 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~ 200 (727)
+...+.+.++....+ .....+-++++|+++.........+...+....+.+.+|+++... .....
T Consensus 83 ~~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 83 DVIRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchh
Confidence 112222222211000 001235689999998776555566776666555567777766432 11111
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.. .....+++.+++.++...++...+...+.. ..++.+..+++.++|.+.-+....
T Consensus 149 l~--sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 149 IQ--SRCAVFRFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred HH--HHhheeeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 122578999999999999999877554432 234678899999999887654433
No 56
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=2.8e-07 Score=100.15 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=117.5
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-------------------cC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-------------------HF 106 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f 106 (727)
..-.+++|.+..++.|..++... .-.+.+.++|++|+||||+|+.+++...-.. .|
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCc
Confidence 34457999999999999998762 3456899999999999999998887311111 01
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCC
Q 036466 107 ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGG 182 (727)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~ 182 (727)
..++.++... ....+.+.+.+... ..+++-++|||+++.......+.+...+-..
T Consensus 88 ~DvlEidaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP 146 (709)
T PRK08691 88 VDLLEIDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (709)
T ss_pred cceEEEeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC
Confidence 1111111111 11122222222211 1245568999999988876777788877665
Q ss_pred CCCCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 183 AEGSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 183 ~~~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
...+++|++|.+.. +...+. .....+.+++++.++...++.+.+...+.. ...+.+..|++.++|.+.-+..+
T Consensus 147 p~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 55677777765432 211111 122678899999999999999877554432 34467889999999988554433
No 57
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=1.5e-07 Score=91.42 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=94.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
.+.+.|+|++|+|||+|++.+++. .......+.|++.... .....++ .+.++ +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~---------------------~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAV---------------------LENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHH---------------------Hhhcc-c
Confidence 357899999999999999999984 3333445667766321 0001111 11111 2
Q ss_pred eEEEEEcCCCCCC-hhhHHH-HHHhhcCC-CCCCEE-EEecCc---------hHHHHHHhhcCCCCceecCCCChhhHHH
Q 036466 156 RYLLVMDDVWNED-PRAWGE-LKSLLLGG-AEGSKI-LVTTRS---------NKVALIMATMRGTTGYNLQELPYKDCLS 222 (727)
Q Consensus 156 ~~LlvlDd~~~~~-~~~~~~-~~~~l~~~-~~~~~i-liTsr~---------~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 222 (727)
.-+|+|||+|... ..+|.. +...+... ..+..+ |+|+.. +.+...+ .....++++++++++.++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQLNDLTDEQKII 168 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeeeCCCCCHHHHHH
Confidence 3489999998642 234442 22323221 234455 455544 1222222 223688999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 223 LFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
++++.+...+. .-.++...-|++.+.|..-.+..+-..+
T Consensus 169 iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99988864432 2334667889999988887776655544
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=1.6e-07 Score=100.79 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=118.7
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc--CCceEEEEecCCCCHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH--FELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~ 124 (727)
.-.++||-+..++.|.+++... .-.+.+.++|+.|+||||+|+.+++...-... -..... ..++.-...
T Consensus 14 tFddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~----~PCG~C~sC 84 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA----QPCGQCRAC 84 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC----CCCcccHHH
Confidence 3457899999999999999763 34567899999999999999998874211000 000000 000000111
Q ss_pred HHHHHH----hc-CCCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 125 TKIINS----VT-GGNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 125 ~~ll~~----l~-~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
..+... +. .........+++.+.+.... .++.-++|||+++......++.+...|-....++++|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 111100 00 00001122333333332211 3455699999999998888888888776655567766666543
Q ss_pred -HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 196 -KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 196 -~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
.+...+. .....+.++.++.++..+.+.+.....+.. ...+.++.|++.++|.|.....
T Consensus 165 ~kLlpTIr--SRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 165 QKIPVTVL--SRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HhhhhHHH--HHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2222111 122789999999999999998876443322 2345678899999999864443
No 59
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.9e-07 Score=100.44 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=118.4
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH-------------------hcCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE-------------------EHFE 107 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~ 107 (727)
.-.+++|.+..++.|..++... .-.+.+.++|++|+||||+|+.+++...-. +.|.
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 3457899999999999998762 345678899999999999999998732110 1122
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCC
Q 036466 108 LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGS 186 (727)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~ 186 (727)
.+++++.....++.+ .++++.. +... ..+++-++|+|+++.......+.+...+-.....+
T Consensus 89 dlieidaas~~gvd~-ir~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 89 DLIEIDAASRTGVEE-TKEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ceEEeecccccCHHH-HHHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 222222211111111 1222222 1111 22456699999999888778888888887655566
Q ss_pred EEEEecCc-hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHHHh
Q 036466 187 KILVTTRS-NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTVGS 262 (727)
Q Consensus 187 ~iliTsr~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 262 (727)
.+|++|.+ ..+...+ ......+++.+++.++..+++.+.+...+. ....+.+..|++.++|.+. ++..+-.
T Consensus 151 ~fIL~Ttd~~kil~tI--~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 151 KFILATTDYHKIPVTI--LSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred eEEEEECChhhhhhhH--HHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66654443 3232221 223378999999999999999886654432 2344667889999999664 5554433
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.6e-07 Score=97.90 Aligned_cols=186 Identities=18% Similarity=0.194 Sum_probs=120.3
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh------------------h-HhcC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR------------------V-EEHF 106 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~------------------~-~~~f 106 (727)
..-.+++|-+..++.|.+++... .-++.+.++|++|+||||+|+.++.... + .+.+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC
Confidence 34467899999999999888662 3456899999999999999998876210 0 0112
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCC
Q 036466 107 ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGS 186 (727)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~ 186 (727)
..++.++.....++.+ .++++...... -..++.=++|+|+++.......+.+...+-...+.+
T Consensus 85 ~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 85 PDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred CCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2233333332222222 22222222100 012345689999999888878888888887766777
Q ss_pred EEEEecCc-hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 187 KILVTTRS-NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 187 ~iliTsr~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
++|++|.. ..+...+ ......+++++++.++..+.+.+.+...+.. ...+.+..|++.++|.+..+.
T Consensus 148 ~fIlatte~~Kl~~tI--~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 148 KFILATTEVKKIPVTI--ISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEEEeCChHHHHHHH--HHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 77766643 3332222 1233789999999999999999887554432 334667899999999886443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=2.3e-10 Score=112.96 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=176.6
Q ss_pred cceEEEecCCCcc---ccccccCCCCcCcEEeccCCccccc--cCccccCCCCCCEeecCCCCCCcccC--hhhcccccC
Q 036466 431 SLRVLVLTNSAIE---VLPRKMGNLKQLRHLDLSGNRKIKK--LPNSICELQSLQTLNLGDCLELEELP--KDIRYLVSL 503 (727)
Q Consensus 431 ~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L 503 (727)
.|+.|.+.++.-. .+-.....++++++|++.+|..++. +.+.-.+|++|+.|++..|..+.... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 6777777776633 3333456788999999998875542 22223468889999998877665432 244578889
Q ss_pred ceeEecccccc---cccccCCCCCCCcEEeccccCCch--hhhhhccCCCCcCeeecccCcCCCcCc--cccccCcccce
Q 036466 504 RMFVVTTKQKS---LLESGIGCLSSLRFLMISNCGNLE--YLFEDIDQLSVLRSLVVNACPRLNLLP--PAMKYLSSLER 576 (727)
Q Consensus 504 ~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~ 576 (727)
.+|+++.+... .+......+..++.+.+.+|...+ .+...-+.++.+..+++.+|..++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99988866433 222234455567777666775432 333333445566677777776554332 12235678999
Q ss_pred eeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc--cCccCc
Q 036466 577 LIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA--LPGSLK 654 (727)
Q Consensus 577 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~ 654 (727)
|+.++|..++... +.....++.+|+.|-+++|..+++........+++.|+.+++.+|..... +..--.
T Consensus 299 l~~s~~t~~~d~~---------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 299 LCYSSCTDITDEV---------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hcccCCCCCchHH---------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 9999987765431 23344567899999999999988887777778899999999998866543 333235
Q ss_pred ccccccccccccccccccc-----CccCCCCCccCeeeccCCcchhhh
Q 036466 655 DLEALENLVIGICPKLSSL-----PEGMHHLTTLKTLAIEECPALCER 697 (727)
Q Consensus 655 ~l~~L~~L~l~~~~~~~~l-----~~~l~~l~~L~~L~l~~c~~l~~~ 697 (727)
+++.|+.|+++.|..+.+. ...-.+...|+.+.+++||.+++.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 7899999999999887664 233345678999999999999775
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=1.9e-07 Score=95.80 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec--CCCCHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS--EDSGKRQ 122 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~ 122 (727)
|..-.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++... ...|.. .++... ...+. +
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~-~~~eln~sd~~~~-~ 79 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKE-AVLELNASDDRGI-D 79 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCcc-ceeeecccccccH-H
Confidence 33445789999999999888765 2334578999999999999999987321 112211 122221 11111 2
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHHH
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIM 201 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~~ 201 (727)
..++.+..+...... ...++.-++|||+++.........+...+-.....+++++++... .+...+
T Consensus 80 ~vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 80 VVRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 223332222110000 001345689999999887666666666664444567777766442 111111
Q ss_pred hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 202 ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 202 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
. .....++++++++++..+.+...+...+..- ..+.+..+++.++|....+...
T Consensus 147 ~--SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 147 Q--SRCAIVRFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred H--HhhhcccCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1126799999999999999988775544332 2466789999999977555433
No 63
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.6e-07 Score=96.92 Aligned_cols=204 Identities=12% Similarity=0.064 Sum_probs=122.8
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEE---EEecCCCCH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIW---ICVSEDSGK 120 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~---~~~~~~~~~ 120 (727)
.|.....++|.++..+.|.+.+... .-+....++|+.|+||+|+|..+++...-+........ ......++.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 3444567999999999999998763 44668999999999999999988874211111100000 000000001
Q ss_pred HHHHHHHHHHhcCC---------C-----CCCCChHHHHHHHHHHhC-----CceEEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 121 RQIMTKIINSVTGG---------N-----HGNLDPDRLQKVLRDSLN-----GKRYLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 121 ~~~~~~ll~~l~~~---------~-----~~~~~~~~~~~~l~~~l~-----~~~~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
-...+.+...-.+. + ......+++. .+.+.+. +.+-++|||+++..+....+.+...+..
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 11112221111100 0 0112334432 2333332 4567999999999998888888888876
Q ss_pred CCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 182 GAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 182 ~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
..+++.+|++|........ ........+.+.+++.++..+++.+... .. ..+.+..++..++|.|.....+.
T Consensus 168 pp~~~~~IL~t~~~~~llp-ti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~----~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLP-TIRSRCRKLRLRPLAPEDVIDALAAAGP---DL----PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchH-HhhccceEEECCCCCHHHHHHHHHHhcc---cC----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 6566767777766533211 1223447899999999999999987531 11 11223678999999998765543
No 64
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=2.1e-07 Score=100.05 Aligned_cols=198 Identities=16% Similarity=0.170 Sum_probs=117.5
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-.+++|-+..++.|..++... .-.+.+.++|++|+||||+|+.+++...-.+.+...+|.+.+- ..+......
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc-~~i~~~~h~ 85 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC-LAVRRGAHP 85 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh-HHHhcCCCC
Confidence 3356899999999999998763 3456789999999999999999987532222221111211100 000000000
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHH
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALI 200 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~ 200 (727)
-+..+... .....+.+.+ +.+.+ .+++-++|||+++......+..+...+-...+.+.+|+++... .+...
T Consensus 86 dv~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 86 DVLEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ceEEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000000 0111222111 12111 2355688999999887777888888887655566666555433 22111
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+ ......+.+.+++.++..+++.+.+...+.. ...+.+..|++.++|.+--+.
T Consensus 163 I--~SRc~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 163 I--LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred H--hcceEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 1223789999999999999999887554433 234678899999999996554
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.1e-07 Score=99.51 Aligned_cols=200 Identities=15% Similarity=0.091 Sum_probs=117.6
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
|..-.+++|-+..+..|..++... .-.+.+.++|++|+||||+|+.+++...-..... ...|....+-..+.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~ 85 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEIT 85 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHH
Confidence 334467899999999999998763 2345789999999999999999987421111000 01111111111111
Q ss_pred HHHHHHhcCCCC-CCCChHHHHH---HHHHH-hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-hHHH
Q 036466 125 TKIINSVTGGNH-GNLDPDRLQK---VLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKVA 198 (727)
Q Consensus 125 ~~ll~~l~~~~~-~~~~~~~~~~---~l~~~-l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-~~~~ 198 (727)
......+..-.. .....+.+.+ .+... ..++.-++|||+++......++.+...+-.......+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 111001100000 0111222222 22111 2345669999999999888888888877554455655555544 2222
Q ss_pred HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 199 LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
..+ ......+.+.+++.++..+++.+.+...+. ....+++..|++.++|.+.-.
T Consensus 166 ~TI--~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETI--LSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHH--HhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHH
Confidence 211 112377999999999999999887755443 234567899999999998433
No 66
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=2.2e-09 Score=122.31 Aligned_cols=127 Identities=30% Similarity=0.372 Sum_probs=66.7
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCcc-ccccC-ccccCCCCCCEeecCCCCCCcccChhhcccccCceeE
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRK-IKKLP-NSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFV 507 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 507 (727)
...+.+.+.++.+..++... .++.|+.|-+..|.. ...++ ..|..++.|+.||+++|.....+|..++.+.+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 34455555555554443322 233455555555531 22222 2244455666666665555556666666666666666
Q ss_pred ecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeeccc
Q 036466 508 VTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNA 557 (727)
Q Consensus 508 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~ 557 (727)
++.+.+..+|.++.++..|.+|++..+.....++..+..+.+|++|.+..
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66666655555666666666666655554444444444455566655543
No 67
>PTZ00202 tuzin; Provisional
Probab=98.78 E-value=3.6e-07 Score=92.54 Aligned_cols=172 Identities=11% Similarity=0.200 Sum_probs=106.8
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
...|.+++.|+||++++..|...|..... ..+++++|+|++|+|||||++.+..... + ..++++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 45567788999999999999999976432 2457999999999999999999986321 1 13343333 579
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh----C--CceEEEEEcCCCCCC--hhhHHHHHHhhcCCCCCCEEEEecC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSL----N--GKRYLLVMDDVWNED--PRAWGELKSLLLGGAEGSKILVTTR 193 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l----~--~~~~LlvlDd~~~~~--~~~~~~~~~~l~~~~~~~~iliTsr 193 (727)
+++..++.+|+.+.. ..-.++...|.+.+ . +++.+||+-== +.+ ...+++....-.+ ..-|.|++---
T Consensus 324 ElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~d-rr~ch~v~evp 399 (550)
T PTZ00202 324 DTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACD-RRLCHVVIEVP 399 (550)
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHcc-chhheeeeeeh
Confidence 999999999986322 22233444444433 2 44455554322 221 1123333322222 23566776544
Q ss_pred chHHHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 194 SNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.+++.......+...-+.++.|+.++|.+|-++..
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 33333222233334678999999999999988754
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=9.8e-08 Score=92.78 Aligned_cols=178 Identities=18% Similarity=0.241 Sum_probs=113.4
Q ss_pred CceeecchhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 49 SDIIGRYEDGEK---IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 49 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
+++||.+..+-+ |..++.+ .....+.+||++|+||||||+-++..... ....||..+.........+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq------~~ipSmIlWGppG~GKTtlArlia~tsk~----~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ------NRIPSMILWGPPGTGKTTLARLIASTSKK----HSYRFVELSATNAKTNDVR 207 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc------CCCCceEEecCCCCchHHHHHHHHhhcCC----CceEEEEEeccccchHHHH
Confidence 456666554433 4444444 45678899999999999999988874222 2356888888777677777
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE--ecCchHHHHHHhh
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKVALIMAT 203 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili--Tsr~~~~~~~~~~ 203 (727)
+++++- .-...+.+++.+|++|+++.-...+. -.+|+.-..|..++| ||.++.+.-....
T Consensus 208 ~ife~a---------------q~~~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 208 DIFEQA---------------QNEKSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHH---------------HHHHhhhcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCccchhHHH
Confidence 777764 22233557889999999965432221 122343344665554 7777766544443
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhc---cCCC-----CC--ChhHHHHHHHHHHHcCCch
Q 036466 204 MRGTTGYNLQELPYKDCLSLFMKCAF---KVGQ-----EK--HPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 204 ~~~~~~~~l~~l~~~~~~~l~~~~~~---~~~~-----~~--~~~~~~~~~~i~~~~~g~P 254 (727)
.....++.++.|..++...++.+... ..+. +. ......+.+-++..|+|-.
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 44458899999999999999987442 1111 10 1234456677777787754
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.1e-07 Score=95.40 Aligned_cols=202 Identities=12% Similarity=0.132 Sum_probs=122.8
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh--cCCceEEEEecCCCCHH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE--HFELKIWICVSEDSGKR 121 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~~~~~~~~~~~~ 121 (727)
.|.....++|.++....|...+... .-+..+.|+|+.|+||||+|+.++....-.. .+... .....+...
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCC
Confidence 4445567899999999999999762 4466899999999999999999887421111 01100 000011111
Q ss_pred HHHHHHHHHhc-------CC--C-----CCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCC
Q 036466 122 QIMTKIINSVT-------GG--N-----HGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGG 182 (727)
Q Consensus 122 ~~~~~ll~~l~-------~~--~-----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~ 182 (727)
...+.+...-. .+ . ......+++. .+.+.+ .++.-++|||+++..+....+.+...+-..
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 22333322211 00 0 0112234433 333333 245669999999999888888888888665
Q ss_pred CCCCEEEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 183 AEGSKILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 183 ~~~~~iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
..+..+|++|... .+.... ......+.+.+++.++..+++.+.+.... ...+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptI--rSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTI--RSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHH--HhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455555544433 232222 12337899999999999999988432111 224557889999999998665543
No 70
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=3.1e-07 Score=98.85 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
|..-..++|++..++.|.+++... .-++.+.++|++|+||||+|+.+++...-...... ..++.....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-------~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-------DCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCcccHHH
Confidence 334457899999999999998662 33568999999999999999999874211111100 001111111
Q ss_pred HHHHHHhcCC-----CCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 125 TKIINSVTGG-----NHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 125 ~~ll~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
+.+....... .......+++.+.+... ..+++=++|+|+++......+..+...+-...+.+.+|++|...
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1111111000 00011122221111110 11233369999999888777888888776655566665555433
Q ss_pred -HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHHH
Q 036466 196 -KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTVG 261 (727)
Q Consensus 196 -~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a 261 (727)
.+.... ......+++.+++.++....+...+...+.. ...+.+..+++.++|.+. |+..+-
T Consensus 160 ~KLl~TI--~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 160 QKIPLTI--ISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhHHH--HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 222221 1223789999999999999999876543322 224567889999999775 444433
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=3.1e-07 Score=97.91 Aligned_cols=193 Identities=18% Similarity=0.189 Sum_probs=115.1
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-------------------
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH------------------- 105 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------- 105 (727)
|..-.+++|.+...+.|...+... .-++.+.++|++|+||||+|+.++....-...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 344467999999988888888652 33467899999999999999999874211110
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCC
Q 036466 106 FELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEG 185 (727)
Q Consensus 106 f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~ 185 (727)
+..+..++.....+..+ .+++...... .-..+++-++|+|+++.......+.+...+....+.
T Consensus 85 ~~dv~el~aa~~~gid~-iR~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 85 FMDVIELDAASNRGIDE-IRKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred CCccEEEeCcccCCHHH-HHHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 00111122211111111 1122111100 001235669999999887666667777777654445
Q ss_pred CEEEEecCc-hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc-hHHHHHHHhh
Q 036466 186 SKILVTTRS-NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI-PLAVRTVGSL 263 (727)
Q Consensus 186 ~~iliTsr~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~~ 263 (727)
+.+|++|.. ..+.... ......+.+.+++.++....+.+.+...+.. ...+++..|++.++|. +.++..+-..
T Consensus 148 vv~Ilattn~~kl~~~L--~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 148 VVFVLATTNLEKVPPTI--ISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEEEeCChHhhhHHH--hcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555544433 3232222 2234789999999999999998877543322 2346678899877654 5676666543
Q ss_pred h
Q 036466 264 L 264 (727)
Q Consensus 264 l 264 (727)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 3
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.7e-07 Score=99.52 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=118.5
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH-------------------hcCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE-------------------EHFE 107 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~ 107 (727)
.-.++||-+..++.|.+++... .-+....++|++|+||||+|+.++....-. +.+.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 3457899999999999999763 345678999999999999999888742111 1122
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCE
Q 036466 108 LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSK 187 (727)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ 187 (727)
.++.++......+.+ .++++..+... -..++.-++|||+++.......+.+...+-...+.++
T Consensus 89 d~~eidaas~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 89 DLFEVDAASRTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred eEEEEcccccCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222333222222222 22233222100 0123456889999999888788888888876666777
Q ss_pred EEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 188 ILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 188 iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
+|++|.+. .+... .......+.+++++.++..+.+.+.+...+.. ...+.+..|++.++|.+.-+..
T Consensus 152 fIlattd~~kl~~t--I~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVT--VLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHH--HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHH
Confidence 77665443 22211 11223778999999999998888776554433 2345678899999998854443
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=2.2e-07 Score=101.52 Aligned_cols=198 Identities=13% Similarity=0.138 Sum_probs=119.4
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-.++||-+..++.|.+.+... .-.+.+.++|+.|+||||+|+.++....-...+.. ..+..-...+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHH
Confidence 34467999999999999999762 33567899999999999999999874211111000 0011111111
Q ss_pred HHHHHhcC-----CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH
Q 036466 126 KIINSVTG-----GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 126 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~ 196 (727)
.+...-.. ........++..+.+... ..++.-++|||+++.......+.+...+-...+.+++|++|.+..
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 11100000 000011222222222111 234566999999999988888888888776656666666665532
Q ss_pred -HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 197 -VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 197 -~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
+...+ ......+.+++++.++..+++.+.....+.. ...+.+..|++.++|.+.-...+
T Consensus 161 kLl~TI--~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 161 KLPVTI--LSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccchHH--HhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22111 1123789999999999999998876443322 23466788999999988644433
No 74
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.75 E-value=7.2e-07 Score=93.78 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=118.8
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh--------------------
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-------------------- 104 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------- 104 (727)
|..-.+++|.++.++.|.+++... .-.+.+.++|++|+|||++|+.++....-..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 344457899999999999998652 3456789999999999999998887421110
Q ss_pred cCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCC
Q 036466 105 HFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAE 184 (727)
Q Consensus 105 ~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~ 184 (727)
+++ +.+++...... .+..++++..+...+ ..+++-++|+|+++.........+...+....+
T Consensus 85 ~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 85 SLD-VIEIDAASNNG-VDDIREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred CCC-EEEeeccccCC-HHHHHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 111 12222111111 111222333221100 113445888999988776677778777755555
Q ss_pred CCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 185 GSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 185 ~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
.+.+|+++.+.. +..... .....++..+++.++..+++...+...+.. ..++.+..+++.++|.|..+.....
T Consensus 147 ~~~lIl~~~~~~~l~~~l~--sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 147 HVVFILATTEPHKIPATIL--SRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred ceeEEEEeCCHHHHHHHHH--hheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 666666665443 222222 123678999999999999998877544332 2346778899999999976665443
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.74 E-value=6.3e-07 Score=87.18 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=91.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.|+|++|+|||.|++.+++. .......+.|++..+ ....+. +.+.. + .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~ 93 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EG 93 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hc
Confidence 346999999999999999999884 333334566776422 111111 11111 1 12
Q ss_pred eEEEEEcCCCCCC-hhhHH-HHHHhhcC-CCCCCEEEEecCchHHHH------HHhhcCCCCceecCCCChhhHHHHHHH
Q 036466 156 RYLLVMDDVWNED-PRAWG-ELKSLLLG-GAEGSKILVTTRSNKVAL------IMATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 156 ~~LlvlDd~~~~~-~~~~~-~~~~~l~~-~~~~~~iliTsr~~~~~~------~~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
.-+|||||++... ...+. .+...+.. ...+..+|+|++...-.. ..........+++++++.++..+++++
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999997642 11222 22332222 123566999998632211 111211236899999999999999998
Q ss_pred hhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 227 CAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
.+...+. .-..+.+.-|++.++|..-.+.-+
T Consensus 174 ~a~~~~l---~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 174 RAQRRGL---ALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHcCC---CCCHHHHHHHHHhCCCCHHHHHHH
Confidence 7644322 234466788888888766655433
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=6.2e-07 Score=95.97 Aligned_cols=199 Identities=14% Similarity=0.158 Sum_probs=118.6
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCc-eEEEEecCCCCHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFEL-KIWICVSEDSGKRQI 123 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~ 123 (727)
|..-.+++|-+..+..|..++... .-.+.+.++|++|+||||+|+.++....-...... -.+..|... ..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~ 87 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TN 87 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hH
Confidence 334457899999999999888662 33568999999999999999999874211110000 000001000 00
Q ss_pred HHHHHHHhcC-----CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec-C
Q 036466 124 MTKIINSVTG-----GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT-R 193 (727)
Q Consensus 124 ~~~ll~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs-r 193 (727)
...+...... ........+++.+.+... +.+++-++|+|+++......++.+...+-...+.+.+|++| +
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 1111000000 000112223333322221 12456689999999988888888888887666666666544 4
Q ss_pred chHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 194 SNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
...+..... .....+++.+++.++..+++.+.+...+.. ...+++..|++.++|.+.-+
T Consensus 168 ~~kI~~tI~--SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 168 VQKIPATII--SRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHhhHHHH--hcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 333333222 223679999999999999999887554432 23466788999999977444
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=3.9e-07 Score=99.45 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=118.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~ 124 (727)
.-.++||-+..++.|.+++... .-.+.+.++|+.|+||||+|+.++....-.... .+...- .++.-...
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~----pCg~C~~C 84 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT----PCGVCQAC 84 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC----CCCccHHH
Confidence 3457899999999999998763 345678999999999999999987632111000 000000 01111111
Q ss_pred HHHHHHhcC-----CCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-
Q 036466 125 TKIINSVTG-----GNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS- 194 (727)
Q Consensus 125 ~~ll~~l~~-----~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~- 194 (727)
+.+...-.. ........+++.+.+.... .++.-++|||+++......++.+...+-.....+++|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111100000 0001122223322222211 134458899999999888888888777665556666665544
Q ss_pred hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 195 NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
..+... .......+.+++++.++..+++.+.+...+.. ...+.+..|++.++|.+.-+..+
T Consensus 165 ~kil~T--IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVT--VLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHH--HHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222221 12233889999999999999999877544433 23466788999999987555433
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.73 E-value=4.9e-07 Score=85.24 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-------------------cCCceEEEEecCCCCH
Q 036466 60 KIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-------------------HFELKIWICVSEDSGK 120 (727)
Q Consensus 60 ~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~~~~~~~~~~~ 120 (727)
.|.+.+... .-+..+.++|++|+|||++|+.++....-.. .+....++........
T Consensus 3 ~l~~~i~~~-----~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG-----RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK 77 (188)
T ss_pred HHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC
Confidence 345555441 3357899999999999999999887421110 1111122221111111
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHH
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVAL 199 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~ 199 (727)
.+..+++...+.... ..+.+-++|+|+++.......+.+...+-...+.+.+|++++.. .+..
T Consensus 78 ~~~i~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQVRELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 122222222221100 12356689999998888777888888887655667777766543 2222
Q ss_pred HHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 200 IMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 200 ~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
... .....+.+.+++.++..+++.+. +. .++.+..+++.++|.|.
T Consensus 142 ~i~--sr~~~~~~~~~~~~~~~~~l~~~----gi-----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIR--SRCQVLPFPPLSEEALLQWLIRQ----GI-----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHH--hhcEEeeCCCCCHHHHHHHHHHc----CC-----CHHHHHHHHHHcCCCcc
Confidence 221 23378999999999999999886 11 23668899999999885
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.72 E-value=1.5e-07 Score=85.24 Aligned_cols=124 Identities=18% Similarity=0.127 Sum_probs=74.0
Q ss_pred eecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 52 IGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
+|+++++..+...+... ..+.+.|+|++|+|||++++++++... .....++|+++................
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999888652 346899999999999999999998432 222445666665433222111111100
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC------CCCCEEEEecCch
Q 036466 132 TGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG------AEGSKILVTTRSN 195 (727)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~------~~~~~iliTsr~~ 195 (727)
............++.++++||++.........+...+... ..+..+|+|+...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223346789999999865333333344433332 3577888888754
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6e-07 Score=97.62 Aligned_cols=187 Identities=17% Similarity=0.205 Sum_probs=116.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH-------------------hcCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE-------------------EHFE 107 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~ 107 (727)
.-.+++|-+..++.|..++... .-.+.+.++|++|+||||+|+.++....-. +.|.
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3356899999999999998762 345678999999999999999998742111 0111
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCE
Q 036466 108 LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSK 187 (727)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ 187 (727)
.+++++......+ +..++++...... -..+++-++|+|+++.......+.+...+-.....+.
T Consensus 89 d~~ei~~~~~~~v-d~ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 89 DLIEVDAASNTQV-DAMRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred ceeEeeccccCCH-HHHHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1222221111111 1122222222100 0124566899999998887778888888876555666
Q ss_pred EEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHH
Q 036466 188 ILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTV 260 (727)
Q Consensus 188 iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 260 (727)
+|++|.+. .+...+ ......+.+++++.++..+++.+.+...+.. ...+.+..|++.++|.+. ++..+
T Consensus 152 fIL~t~d~~kil~tI--~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTV--LSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66655443 221111 1112788999999999999998876544332 234667889999999875 44444
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.71 E-value=4.3e-07 Score=88.57 Aligned_cols=177 Identities=18% Similarity=0.131 Sum_probs=103.4
Q ss_pred Ccee-ecchhH-HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 49 SDII-GRYEDG-EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 49 ~~~v-Gr~~~~-~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
..|+ |...+. ..+.++.... ...+.+.|+|++|+|||+||+.+++. ....-....|+++.... . .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~---~---~ 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL---L---A 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH---H---H
Confidence 3444 554443 4444444321 23457999999999999999999884 22222344566654321 0 0
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-CCCC-EEEEecCchHHHHH----
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-AEGS-KILVTTRSNKVALI---- 200 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-~~~~-~iliTsr~~~~~~~---- 200 (727)
+ ... ...-++|+||++..+......+...+... ..+. .+|+|++.......
T Consensus 85 ----~------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 85 ----F------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred ----H------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 0 011 22347889999876543444444444321 1233 46666664321110
Q ss_pred -HhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 201 -MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 201 -~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.........+.++++++++..+++.+.....+. ...+++.+.+++...|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111112368999999999888888765433232 2334677889999999999988877665
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.1e-10 Score=106.90 Aligned_cols=180 Identities=18% Similarity=0.101 Sum_probs=117.4
Q ss_pred CCCCEeecCCCCCC-cccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhh--hhhccCCCCcCe
Q 036466 477 QSLQTLNLGDCLEL-EELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYL--FEDIDQLSVLRS 552 (727)
Q Consensus 477 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l--~~~l~~l~~L~~ 552 (727)
..|+.|||+...+. ..+...+..|.+|+.|.+.++++. .+...+.+-.+|+.|+++.|+.++.- --.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46999999874443 245567889999999999999998 44556777889999999999877643 345778999999
Q ss_pred eecccCcCCCcCc-ccccc-CcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCc-chhhhc
Q 036466 553 LVVNACPRLNLLP-PAMKY-LSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLEL-PQWLLQ 629 (727)
Q Consensus 553 L~l~~~~~~~~~~-~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-~~~~~~ 629 (727)
|++++|....... ..+.+ -++|..|++++|..--.. ..+.-....|++|.+|||+.|..+++- ...+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--------sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-- 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--------SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-- 334 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--------hHHHHHHHhCCceeeeccccccccCchHHHHH--
Confidence 9999998654322 22232 256888888887442111 011222345667777777776555442 1122
Q ss_pred CCCCcccEEEecCCCCccccCc---cCccccccccccccccc
Q 036466 630 GSSKTLQTLAIGDCPNFMALPG---SLKDLEALENLVIGICP 668 (727)
Q Consensus 630 ~~~~~L~~L~L~~~~~~~~~~~---~l~~l~~L~~L~l~~~~ 668 (727)
..++.|++|+++.|..+ +|. .+...|.|.+|++.+|-
T Consensus 335 ~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 45666777777776543 222 24566677777776663
No 83
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.2e-07 Score=93.07 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=118.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh----hHhcCCceEEEEe-cCCCCHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR----VEEHFELKIWICV-SEDSGKRQI 123 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~~~~~-~~~~~~~~~ 123 (727)
.+++|-+..++.|.+++... .-++...++|+.|+||||+|+.++.... ...+.|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998662 3456889999999999999999987421 1233444334331 11112222
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhh
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMAT 203 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~ 203 (727)
.+++...+...+ ..+++=++|+|+++......++.+...+-...+++.+|++|.+.+.... +.
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~-TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILD-TI 140 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH-HH
Confidence 333333331110 1135568888999888888899999999887778888888865432211 11
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 204 MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 204 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
......+.+.+++.++...++.+... + ...+.+..++..++|.|.-+..
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--D-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--C-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 12237899999999999998876541 1 1124467889999998875543
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=5.5e-10 Score=114.40 Aligned_cols=134 Identities=28% Similarity=0.415 Sum_probs=73.0
Q ss_pred hhhhhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccc
Q 036466 422 VTSCISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLV 501 (727)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 501 (727)
.+.+++++..|.++||+.|.+..+|..++.|+ |+.|.+++|+ ++.+|..++.++.|..||.++| .+..+|..++++.
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~ 189 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLT 189 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHH
Confidence 34455555555666666665555555555444 5555555554 4455555555555555555542 3444555555566
Q ss_pred cCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcC
Q 036466 502 SLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPR 560 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 560 (727)
+|+.|.+..|++..+|..++.++ |..|++++ +.+..+|-.+.+|+.|+.|-|.+|..
T Consensus 190 slr~l~vrRn~l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCCC
Confidence 66666666665555555555332 55555544 34455555556666666665555544
No 85
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.4e-08 Score=92.36 Aligned_cols=125 Identities=28% Similarity=0.368 Sum_probs=41.2
Q ss_pred cCCCcceEEEecCCCccccccccC-CCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhh-cccccCc
Q 036466 427 SKSKSLRVLVLTNSAIEVLPRKMG-NLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDI-RYLVSLR 504 (727)
Q Consensus 427 ~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~ 504 (727)
.++..++.|+|.+|.|..+. .+. .+.+|+.|++++|. +..++ .+..+++|++|++++|.+. .+...+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 35567788888888887764 454 57888888888887 44554 4677888888888876544 444334 4678888
Q ss_pred eeEeccccccccc--ccCCCCCCCcEEeccccCCch---hhhhhccCCCCcCeeec
Q 036466 505 MFVVTTKQKSLLE--SGIGCLSSLRFLMISNCGNLE---YLFEDIDQLSVLRSLVV 555 (727)
Q Consensus 505 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~---~l~~~l~~l~~L~~L~l 555 (727)
.|++++|.+..+. ..+..+++|+.|++.+|+... +-...+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888876332 234556677777776664322 12233455566666654
No 86
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=7.9e-08 Score=84.09 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=79.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
++++|+|+.|+||||++++++.+.. ....++|+++...........+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCC
Confidence 5899999999999999999997432 3345677776543221100000 2233333333467
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHH---hhcCCCCceecCCCChhh
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIM---ATMRGTTGYNLQELPYKD 219 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~---~~~~~~~~~~l~~l~~~~ 219 (727)
.+++||+++... .|......+.+..+..+|++|+......... ...+....+++.||+-.|
T Consensus 63 ~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 889999997765 7888888887766778999999876555321 122233567899988776
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.6e-07 Score=94.01 Aligned_cols=204 Identities=14% Similarity=0.161 Sum_probs=118.2
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE-ecCCCCHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC-VSEDSGKRQIMT 125 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~ 125 (727)
.-..++|.+..++.|..++... .-+..+.++|++|+||||+|+.+++...-...+....|.. ....++.-...+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 3457899999999999998762 3356789999999999999999887422111110000000 000111111111
Q ss_pred HHHHHhcC-----CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec-Cch
Q 036466 126 KIINSVTG-----GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT-RSN 195 (727)
Q Consensus 126 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs-r~~ 195 (727)
.+...-.. ........+++.+..... ..+.+-++|+|+++......++.+..++....+.+.+|+++ +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11111000 000111123333322222 12345688999999888778888888887666666666555 333
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
.+..... .....+++.+++.++..+++...+...+. ....+.+..+++.++|.+--+...
T Consensus 169 kl~~tl~--sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIA--SRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322211 11267899999999999999887644332 233567899999999988654443
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=7.4e-07 Score=92.76 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=112.2
Q ss_pred CceeecchhHHHHHHHHhcCCC----CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD----GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~----~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
..++|-+..++.|.+++..... ....-++.+.++|++|+|||++|+.++....-.... ...| +.-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~C----g~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGC----GECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCC----CCCHHH
Confidence 4588999999999999976421 001146789999999999999999987631111000 0000 000111
Q ss_pred HHHHHHhcC------CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 125 TKIINSVTG------GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 125 ~~ll~~l~~------~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
+.+...-.+ ++......+++.+.+... ..+++-++|||+++.......+.+...+-...+++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111100000 000111222222222111 1234558888999998877777787777665566666666655
Q ss_pred h-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 195 N-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
. .+...+. .....+.+.+++.++..+++.+.. +. ..+.+..++..++|.|.....+
T Consensus 157 ~~~llpTIr--SRc~~i~f~~~~~~~i~~~L~~~~---~~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIR--SRCRHVALRTPSVEAVAEVLVRRD---GV-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHH--hhCeEEECCCCCHHHHHHHHHHhc---CC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 3322221 233789999999999999987532 11 1355788999999999755443
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.68 E-value=6.2e-07 Score=100.29 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=103.8
Q ss_pred CCCCCceeecchhHH---HHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 45 FVRPSDIIGRYEDGE---KIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
|..-.+|+|.+..+. .|.+.+.. .....+.++|++|+||||+|+.+++. ....|. .+++.. ....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~ 91 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK 91 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH
Confidence 344467899999885 56666654 34456899999999999999999873 333331 111110 0111
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh--CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEE--ecCchHH
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSL--NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILV--TTRSNKV 197 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ili--Tsr~~~~ 197 (727)
+ .+ +......+.+ .+++.++|||+++.......+.+...+.. +..++| ||.+...
T Consensus 92 d-ir-----------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~ 150 (725)
T PRK13341 92 D-LR-----------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYF 150 (725)
T ss_pred H-HH-----------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHh
Confidence 1 11 1111111111 24567999999988765555555544432 444444 3333321
Q ss_pred HHHHhhcCCCCceecCCCChhhHHHHHHHhhccC----CCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 198 ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKV----GQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
.-.-........+.+++++.++...++.+.+... +.......+++...|++.+.|..--+.
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1111111223679999999999999998866410 011123345677889999988754433
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=9.6e-07 Score=96.70 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=121.5
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC--ceEEEEecCCCCHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE--LKIWICVSEDSGKRQ 122 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~ 122 (727)
|....+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++...-..... ...+..|. .-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccH
Confidence 344567999999999999999762 3456899999999999999999987421111110 00000111 111
Q ss_pred HHHHHHHHhcCC-----CCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecC
Q 036466 123 IMTKIINSVTGG-----NHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTR 193 (727)
Q Consensus 123 ~~~~ll~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr 193 (727)
-.+.+...-... .......+++.+.+... ..+++-++|+|+++.......+.+...+-...+.+.+|++|.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 111111111100 00112233322222111 113445789999998887778888888876666777766553
Q ss_pred -chHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 194 -SNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
...+...+. .....+.++.++.++...++.+.+...+.. ...+.+..|++.++|.+.-+....
T Consensus 171 e~~kll~tI~--SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 171 EIRKVPVTVL--SRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred ChhhhhHHHH--hheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333222221 223789999999999999999877544332 234677899999999986554433
No 91
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.63 E-value=1.4e-06 Score=84.93 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=130.9
Q ss_pred Cceeecc---hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHH
Q 036466 49 SDIIGRY---EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~---~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~ 121 (727)
+..+|-. +.++.|.+.+..+.. ...+.+.|+|.+|.|||++++++........ ..-.++++.....++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4566644 345556666666532 3456799999999999999999997422111 11246788888999999
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC-ceEEEEEcCCCCC------ChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG-KRYLLVMDDVWNE------DPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~------~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
.+...++.+++.+...............+.++. +.=+||||+++.. ++.+......++.+...-+-|.+-|++
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999987765556666666666666665 4568999999763 233444455556555555656666654
Q ss_pred hHHHHHHh--hcCCCCceecCCCChhhHH-HHHHHhh--ccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 195 NKVALIMA--TMRGTTGYNLQELPYKDCL-SLFMKCA--FKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 195 ~~~~~~~~--~~~~~~~~~l~~l~~~~~~-~l~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
...+-... ....+..+.++.+..++-. .|+.... ..-..+..-...+.+..|+..++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 32221111 1223467788887766543 3333222 122233334456788999999999875444
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.7e-06 Score=81.96 Aligned_cols=191 Identities=17% Similarity=0.193 Sum_probs=119.8
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
+..|..-.+|+|-++..++|.=++..+- .+....--+.++|+||.||||||.-+++ +....+ -+..+....-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~----k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL----KITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe----EecccccccCh
Confidence 4445556789999998888877665432 2234566899999999999999998887 333322 22222221222
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhc--------CCCCCCEEE----
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLL--------GGAEGSKIL---- 189 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~--------~~~~~~~il---- 189 (727)
..+..++..+ +..=++++|+++.......+-+...+- ..++++|.+
T Consensus 92 gDlaaiLt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 92 GDLAAILTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred hhHHHHHhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 3333333333 123366778887766544443333332 235555533
Q ss_pred -------EecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 190 -------VTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 190 -------iTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
-|||...+...+.. +..-...++-.+.+|-.+++.+.+..-+. .-.++.+.+|++...|-|.-..-+.+
T Consensus 150 ppFTLIGATTr~G~lt~PLrd-RFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD-RFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH-hcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 58887655544432 23456788888999999999887744332 23446789999999999987776666
Q ss_pred hhc
Q 036466 263 LLY 265 (727)
Q Consensus 263 ~l~ 265 (727)
..+
T Consensus 226 RVR 228 (332)
T COG2255 226 RVR 228 (332)
T ss_pred HHH
Confidence 654
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.1e-10 Score=103.82 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred cCceeEecccccc--cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCc--cccccCccccee
Q 036466 502 SLRMFVVTTKQKS--LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLP--PAMKYLSSLERL 577 (727)
Q Consensus 502 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L 577 (727)
.|++||+++..++ ..-..+..|.+|+.|.+.++..-+.+...+..-.+|+.|+++.|..++... -.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555555555544 222234445555555555544444444445555555555555555443322 123445555555
Q ss_pred eccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCC-CcchhhhcCCCCcccEEEecCCCCccc-cCccCcc
Q 036466 578 IFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLL-ELPQWLLQGSSKTLQTLAIGDCPNFMA-LPGSLKD 655 (727)
Q Consensus 578 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~ 655 (727)
+++.|.-.+.. -........++|+.|+|+|+...- .-....+...||+|.+|||++|..++. ....+..
T Consensus 266 NlsWc~l~~~~---------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTEK---------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred CchHhhccchh---------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 55555322111 000111122355555555552111 001111224555555555555543332 1112344
Q ss_pred ccccccccccccccccc-cCccCCCCCccCeeeccCC
Q 036466 656 LEALENLVIGICPKLSS-LPEGMHHLTTLKTLAIEEC 691 (727)
Q Consensus 656 l~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~~c 691 (727)
++.|++|+++.|+.+.. --..+...|+|.+|++-+|
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55555555555554321 0012334455555555543
No 94
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=8e-09 Score=97.56 Aligned_cols=212 Identities=17% Similarity=0.127 Sum_probs=116.0
Q ss_pred cccCceeEecccccc---cccccCCCCCCCcEEeccccCCchhhhhhc-cCCCCcCeeecccCcC-CCcCccccccCccc
Q 036466 500 LVSLRMFVVTTKQKS---LLESGIGCLSSLRFLMISNCGNLEYLFEDI-DQLSVLRSLVVNACPR-LNLLPPAMKYLSSL 574 (727)
Q Consensus 500 l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L 574 (727)
+..++.+++.+|.++ .+...+..+|.|++|++++|.....+. .+ ....+|+.|.+.+... .......+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 344455555555554 222334455555555555543222111 11 1234566665555332 11222334455666
Q ss_pred ceeeccccccccccccccccccCCCCCCCC-CCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcc-ccCcc
Q 036466 575 ERLIFDECESLSLSLNMEMKEEGSHHDRKN-VGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFM-ALPGS 652 (727)
Q Consensus 575 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~ 652 (727)
++|+++.|+.-..... . .... -.+.+++|++-+|.........-+...+||+..+-++.|++-+ .-.+.
T Consensus 149 telHmS~N~~rq~n~D-----d----~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLD-----D----NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhhhccchhhhhccc-----c----ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence 6666665522111000 0 0011 1235666666666443333222233568999999999997644 23445
Q ss_pred Ccccccccccccccccccc--ccCccCCCCCccCeeeccCCcchhhhcCCCCCCCCCccCCCCceeec-cccccc
Q 036466 653 LKDLEALENLVIGICPKLS--SLPEGMHHLTTLKTLAIEECPALCERCKPLTGEDWPKIAHIPQIVFD-GEMIKS 724 (727)
Q Consensus 653 l~~l~~L~~L~l~~~~~~~--~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 724 (727)
...+|.+-.|+|+.+.+-. ++ +.+..++.|..|.+.++|.+...-. .......|+++++|.+. |+.|.+
T Consensus 220 se~~p~~~~LnL~~~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASV-DALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred CCCCCcchhhhhcccccccHHHH-HHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEecCcccch
Confidence 6677888888888775432 22 4577899999999999998855322 23334578999999999 666654
No 95
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.61 E-value=1.5e-06 Score=84.61 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=102.8
Q ss_pred Cceeecc-hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 49 SDIIGRY-EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 49 ~~~vGr~-~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
..++|.. ..+..+.++... ...+.+.|+|++|+|||+|++.+++. .......+.|+.+..... .
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~------~~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~---- 87 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQ------EHSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---F---- 87 (235)
T ss_pred ccccCccHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---h----
Confidence 3344633 344444444432 22357999999999999999988873 333333456776642100 0
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-hhhHHH-HHHhhcC--CCCCCEEEEecCchHHH-----
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-PRAWGE-LKSLLLG--GAEGSKILVTTRSNKVA----- 198 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~~~~~-~~~~l~~--~~~~~~iliTsr~~~~~----- 198 (727)
..+..+.+.+ --+++|||++... ...|+. +...+.. ...+.++|+||+.....
T Consensus 88 -------------~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 88 -------------VPEVLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred -------------hHHHHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 0111111111 1378899997643 123332 2222222 12234799999865322
Q ss_pred -HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 199 -LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 199 -~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
..........+++++++++++-.+++++.+...+ ....++.+.-|++.+.|..-.+..+...+
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1111222237899999999999999988664332 23345677888898888777766555444
No 96
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2.4e-06 Score=93.01 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=118.8
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.++....-....+ +..|+ .-...+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg----~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCG----VCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccc----ccHHHH
Confidence 33457899999999999999762 3456789999999999999999987421100000 00000 001111
Q ss_pred HHHHHhc-------CCCCCCCChHHHHH---HHHHH-hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 126 KIINSVT-------GGNHGNLDPDRLQK---VLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 126 ~ll~~l~-------~~~~~~~~~~~~~~---~l~~~-l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
.+...-. .........++..+ .+... ..+++-++|||+++.......+.+...+-.....+.+|++|..
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1110000 00000011222211 11111 1234558899999999888888888888776666666655543
Q ss_pred h-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH-HHHHHHhhh
Q 036466 195 N-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL-AVRTVGSLL 264 (727)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~~l 264 (727)
. .+...+. .....+....++.++..+++.+.+...+.. ...+.+..|++.++|.+. ++..+-..+
T Consensus 158 ~~kll~TI~--SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 158 PEKVLPTIR--SRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHhhHHHHH--HhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 2222221 223789999999999999998877554432 234567889999999774 555544433
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.61 E-value=7.2e-07 Score=85.40 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=121.3
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceE-EEEecCCCCHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKI-WICVSEDSGKRQI 123 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~ 123 (727)
|....+++|-+..++.|.+.+.. ...+..+.||++|.|||+.|+.+++...-...|...+ =.+++...++. +
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-v 104 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-V 104 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-c
Confidence 34456799999999999999976 2356889999999999999998887432233443322 12222221111 1
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHh---CC---ce-EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSL---NG---KR-YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l---~~---~~-~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~ 196 (727)
.++-...+ +.+.... .+ .+ =+||||+++.+....|..++..+-..+..++.++.+..-+
T Consensus 105 vr~Kik~f--------------akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 105 VREKIKNF--------------AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred hhhhhcCH--------------HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChh
Confidence 11110000 0010000 01 12 4889999999999999999999988777777665554321
Q ss_pred -HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 197 -VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 197 -~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
+...+ ...-..+.-++|.+++...-++..+..++.+. ..++.+.|++.++|--.-...+...+
T Consensus 171 rii~pi--~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 171 RIIRPL--VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred hCChHH--HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 11111 01126788999999999999998886666553 34677899999998654444333333
No 98
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.8e-06 Score=95.00 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-..++|.+..++.|..++... .-.+...++|++|+||||+|+.++....-....+ .+-.|.. ...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~-------C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQE-------CIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhH-------HHH
Confidence 3456899999999999999763 3456789999999999999999987311111000 0000000 000
Q ss_pred HHHH----hcCCCCCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec-CchH
Q 036466 127 IINS----VTGGNHGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT-RSNK 196 (727)
Q Consensus 127 ll~~----l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs-r~~~ 196 (727)
.... +..........+++.+ +.+.. .+++-++|+|+++......+..+...+-...+.+.+|++| +...
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0000 0000000011222211 21211 2455688999999888778888888776654555555444 4333
Q ss_pred HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 197 VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+.... ......+.+.+++.++..+.+...+...+.. ...+++..+++.++|.+.-+.
T Consensus 161 Ll~TI--~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 161 IPLTI--LSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred hhHHH--HhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 32221 1223789999999999999998866444332 234567889999999775433
No 99
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.1e-06 Score=90.31 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=113.6
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH------hcCCceEEEEecCCC-
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE------EHFELKIWICVSEDS- 118 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------~~f~~~~~~~~~~~~- 118 (727)
..-.+++|.+..++.+.+++... .-++.+.++|++|+|||++|+.+++..... ..|...+ +......
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~ 87 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASN 87 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccC
Confidence 33456899999999999999762 345689999999999999999997742111 1122211 1111110
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-hHH
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NKV 197 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-~~~ 197 (727)
...+...+++.++...+ ..+++-++|+|+++......+..+...+....+.+.+|+++.. ..+
T Consensus 88 ~~~~~i~~l~~~~~~~p----------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDIRNLIDQVRIPP----------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHHHHHHHHHhhcc----------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11122223333221100 1134457999999877766677777766554445556555533 222
Q ss_pred HHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 198 ALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
..... .....++.++++.++...++...+...+.. -..+++..+++.++|.+-.+..
T Consensus 152 ~~~l~--sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~---i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 152 IPTIL--SRCQIFDFKRITIKDIKEHLAGIAVKEGIK---FEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred CHHHH--hcceeEecCCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHHHH
Confidence 22211 123678999999999999998877554432 2346778899999997764443
No 100
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.2e-06 Score=90.80 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=114.8
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh-Hh------------------cCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV-EE------------------HFE 107 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~------------------~f~ 107 (727)
.-..++|.+..+..|..++... .-.+...++|++|+||||+|+.++....- .+ .+.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 3456899999999999999762 33567789999999999999988873210 00 011
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCC
Q 036466 108 LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGS 186 (727)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~ 186 (727)
.+++++.....++. ..+.+.. .+... ..+++-++|+|+++.......+.+...+....+..
T Consensus 89 d~~eidaas~~gvd-~ir~I~~-----------------~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 89 DLIEIDAASNRGID-DIRALRD-----------------AVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred cEEEEeCccCCCHH-HHHHHHH-----------------HHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 11222111111111 0111111 11110 12456699999999887777778887776655555
Q ss_pred EEEEec-CchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 187 KILVTT-RSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 187 ~iliTs-r~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.+|++| +...+..... .....+.+.+++.++...++.+.+...+.. ...+++..+++.++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~--SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTIL--SRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHH--HhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555554 3332222211 123689999999999999998877544432 234667889999999876555444
No 101
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=3.3e-07 Score=91.83 Aligned_cols=293 Identities=18% Similarity=0.215 Sum_probs=189.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC-CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF-ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
..|.+.++|.+||||||++-.+.. .+..| +.+.++++.+..+...+.-.+...++....+. +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 367899999999999999977775 55566 55678888888788888888888776544332 223345555556
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChh-hHHHHHHHhhccCC
Q 036466 154 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYK-DCLSLFMKCAFKVG 232 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~~ 232 (727)
.++.++++||..... ..-....-.+....+.-.++.|+|+.... .+...+.++.++.. ++.++|...+....
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCchhHHHHHHHHHhc
Confidence 689999999984322 12233444444455666788899876432 23367778888776 68888766553322
Q ss_pred CCC--ChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhHHHHHhccccccccCC-------CChhHHHHHhhhcCC
Q 036466 233 QEK--HPNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDEHDWEYVRDNDIWKLRQAP-------DDILPALRLSYDQLP 303 (727)
Q Consensus 233 ~~~--~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~w~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~L~ 303 (727)
... ..........|.+..+|.|+++...++..+.-.. ..-....+.....+.+.. ......+..||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 222 3345567789999999999999999988865322 222222222222222222 346778899999999
Q ss_pred hhHHHHHhHhccCCCCCccChHHHHHHHHhcccccCCCCCchHHHHHHHHHHHHHhCCcceecCCCCCCCceehhhHhhH
Q 036466 304 PHLKQCFAYCSIFPKDYEFASVHLVQLWMAHGLLQSPNKNEELENIGMRYFKELCSRSFFQDLGDLLPGLEVFNFQIHDL 383 (727)
Q Consensus 304 ~~~~~~~~~la~f~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~h~l 383 (727)
.-++..+..++.|...|.... ..|.+-|-.. ....-.....+-.+++++++.-..... .-.|+.-+-
T Consensus 239 gwe~~~~~rLa~~~g~f~~~l----~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~----~a~~Rl~eT 305 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLGL----ALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLG----RARYRLLET 305 (414)
T ss_pred hHHHHHhcchhhhhhhhcccH----HHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhh----HHHHHHHHH
Confidence 999999999999988877662 2333333211 011223445566777888886654332 335777777
Q ss_pred HHHHHHHHhcC
Q 036466 384 MHDLALLVAKG 394 (727)
Q Consensus 384 i~~~~~~~~~~ 394 (727)
.+.|...+..+
T Consensus 306 ~r~YalaeL~r 316 (414)
T COG3903 306 GRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHh
Confidence 77777666543
No 102
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=2.6e-08 Score=94.16 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=35.1
Q ss_pred hhhcCCCcceEEEecCCCcc---------ccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCC
Q 036466 424 SCISKSKSLRVLVLTNSAIE---------VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGD 486 (727)
Q Consensus 424 ~~~~~~~~L~~L~l~~~~~~---------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 486 (727)
..+.-|..|..|-+++..-. .+|-.+.-+++|+.+.++.|. ...+-.....-|.|+++.++.
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHN 246 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeec
Confidence 33444677888877765421 123334556777888887776 333333222335677777654
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.4e-06 Score=92.62 Aligned_cols=200 Identities=14% Similarity=0.184 Sum_probs=118.5
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-.+++|-+..++.|.+++... .-...+.++|++|+||||+|+.+++...-...... ..++.-...+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~ 81 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRK 81 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHH
Confidence 3456899999999999988762 23568889999999999999998874211110000 00111111111
Q ss_pred HHHHhcCC-----CCCCCChHHHHHHHHHH-----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-h
Q 036466 127 IINSVTGG-----NHGNLDPDRLQKVLRDS-----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-N 195 (727)
Q Consensus 127 ll~~l~~~-----~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-~ 195 (727)
+...-... .......+++.. +.+. ..+++-++|||+++.......+.+...+-...+...+|++|.. .
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 11110000 000111122111 2111 1245668999999998877788888877654455666665554 3
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch-HHHHHHHhhh
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP-LAVRTVGSLL 264 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~~l 264 (727)
.+...+. .....+.+++++.++..+++...+...+.. ...+.+..|++.++|.+ .++..+...+
T Consensus 161 kll~TI~--SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIV--SRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHH--hhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3332211 223688999999999999998876544322 23467788999999965 6777665444
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=4.1e-06 Score=89.84 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=118.8
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc------------------CC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH------------------FE 107 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------f~ 107 (727)
..-.+++|-+..++.|..++... .-+++..++|++|+||||+|+.++....-... +.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 34457899999999999998662 34567799999999999999988863210000 10
Q ss_pred -ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCC
Q 036466 108 -LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGG 182 (727)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~ 182 (727)
.++.++.... ...+++.+.+.+. ..+++-++|+|+++.......+.+...+-..
T Consensus 86 ~dv~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 86 IDIIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred CeEEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 1111111111 1122222222221 0134568899999999887888888888766
Q ss_pred CCCCEEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 183 AEGSKILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 183 ~~~~~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.+.+++|+++.+.. +.... ......+.+.+++.++..+.+.+.+...+.. ..++++..|++.++|.+.-+....
T Consensus 145 p~~t~FIL~ttd~~kL~~tI--~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATI--LSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCceEEEEEECChhhCchHH--HhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 66777777665531 11111 1223789999999999999998877554432 234678899999999885555443
No 105
>PRK09087 hypothetical protein; Validated
Probab=98.54 E-value=3.2e-06 Score=81.49 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=91.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
.+.+.|+|++|+|||+|++.++... ...|++.. .+..+++..+ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 4579999999999999999777531 12244331 1222222221 01
Q ss_pred eEEEEEcCCCCC--ChhhHHHHHHhhcCCCCCCEEEEecCchHHHH------HHhhcCCCCceecCCCChhhHHHHHHHh
Q 036466 156 RYLLVMDDVWNE--DPRAWGELKSLLLGGAEGSKILVTTRSNKVAL------IMATMRGTTGYNLQELPYKDCLSLFMKC 227 (727)
Q Consensus 156 ~~LlvlDd~~~~--~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~------~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 227 (727)
-+|++||++.. ++.++..+...+.. .|..+|+|++...-.. ..........+++++++.++-.+++++.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999754 33344444444433 3667888887432211 1111223478999999999999999988
Q ss_pred hccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 228 AFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
+...+. .-.+++..-|++.+.|..-.+..+...+
T Consensus 166 ~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL---YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC---CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754322 2335677888888888887777544444
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.53 E-value=2.5e-06 Score=81.94 Aligned_cols=192 Identities=17% Similarity=0.176 Sum_probs=105.3
Q ss_pred eeec-chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 51 IIGR-YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 51 ~vGr-~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
++|- .+..-.....+.... +.....+.|||++|+|||.|.+++++.......-..++|++ ..++...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 3464 333334444444421 12344689999999999999999998432222223466764 4456666666
Q ss_pred HhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-hhHHH-HHHhhcC-CCCCCEEEEecCchHHH------HH
Q 036466 130 SVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-RAWGE-LKSLLLG-GAEGSKILVTTRSNKVA------LI 200 (727)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-~~~~~-~~~~l~~-~~~~~~iliTsr~~~~~------~~ 200 (727)
.+.. ... ..+.+.+++ -=+|+|||++.... ..|.. +...+.. ...|.++|+|++..... ..
T Consensus 82 ~~~~-----~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRD-----GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHT-----TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHc-----ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 5532 122 233333332 34788999976532 22222 2222221 12467899999653110 11
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.......-.+++++.++++..+++++.+...+.. ..+++++-|++.+.+..-.+..+...+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1122234689999999999999999988554433 345677888888888777776655444
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=3.9e-06 Score=89.51 Aligned_cols=174 Identities=12% Similarity=0.062 Sum_probs=105.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.|+|.+|+|||.|++++++.......-..++|++ ..++...+...+.... ...+.+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 45689999999999999999987322222223445653 3456666666653210 11233333333 3
Q ss_pred eEEEEEcCCCCCC--hhhHHHHHHhhcC-CCCCCEEEEecCchHH-HHH-----HhhcCCCCceecCCCChhhHHHHHHH
Q 036466 156 RYLLVMDDVWNED--PRAWGELKSLLLG-GAEGSKILVTTRSNKV-ALI-----MATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 156 ~~LlvlDd~~~~~--~~~~~~~~~~l~~-~~~~~~iliTsr~~~~-~~~-----~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
.-+||+||++... ....+.+...+.. ...+..||+|+..... ... .......-.+.+++++.++..+++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478899997653 2122233333322 1234468888765321 111 11122236788999999999999998
Q ss_pred hhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 227 CAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.+...+.. ....++++.-|++.+.|.|-.+.-+...+
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 87543321 13446788999999999998888776554
No 108
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=1.1e-07 Score=101.47 Aligned_cols=183 Identities=30% Similarity=0.362 Sum_probs=137.9
Q ss_pred hcCCCcceEEEecCCCccccccccCCCC-cCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCc
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLK-QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 504 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 504 (727)
+...+.++.|++.++.+..++....... +|+.|+++.|. +..+|..+..+++|+.|+++.| .+..+|...+.+.+|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 3445789999999999999988777775 99999999988 6666666889999999999885 4556676666889999
Q ss_pred eeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccc
Q 036466 505 MFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECES 584 (727)
Q Consensus 505 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 584 (727)
.|++++|.+..+|.....+..|+++.+++|. ....+..+..++++..|.+.+|.. ..++..+..+++++.|+++.|..
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccchhccccccceeccccccc
Confidence 9999999999888776777789999998864 334556677788888888776654 33466677788888888887643
Q ss_pred ccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcch
Q 036466 585 LSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQ 625 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 625 (727)
... .. .....+++.|+++++......+.
T Consensus 268 ~~i------------~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 268 SSI------------SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccc------------cc-ccccCccCEEeccCccccccchh
Confidence 321 11 45556777888777765554443
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=4.4e-06 Score=89.16 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC----Cc-------------
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF----EL------------- 108 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f----~~------------- 108 (727)
..-.+++|.+..+..|.+++... .-.+.+.++|++|+||||+|+.++....-.... .+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 34457899999999999999762 335678899999999999999988742111000 00
Q ss_pred -eEEEEecC--CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCC
Q 036466 109 -KIWICVSE--DSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEG 185 (727)
Q Consensus 109 -~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~ 185 (727)
.-|+.+.+ ..++ +..+++...+. ..-..+.+-++|+|+++.......+.+..++-...+.
T Consensus 89 ~~d~~~i~g~~~~gi-d~ir~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 89 SLDVLEIDGASHRGI-EDIRQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred CCceEEeeccccCCH-HHHHHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 00111111 0011 11111111110 0001245668899999887766677777777765556
Q ss_pred CEEEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 186 SKILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 186 ~~iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+.+|++|... .+...+ ......+++.+++.++...++.+.+...+.. ...+.+..+++.++|.+.-+.
T Consensus 152 ~~~Il~t~~~~kl~~tI--~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 152 VKFFLATTEIHKIPGTI--LSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDAE 220 (451)
T ss_pred ceEEEEeCChHhcchHH--HHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 6676666432 222111 1223789999999999999998876443322 234677899999999775443
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=5.4e-06 Score=91.91 Aligned_cols=200 Identities=13% Similarity=0.146 Sum_probs=120.1
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-.+++|.+..++.|..++... .-.+.+.++|++|+||||+|+.++....-..... -...++.....+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~ 82 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRA 82 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHH
Confidence 3457999999999999988762 2346789999999999999999987321000000 0001112222233
Q ss_pred HHHHhcCC-----CCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-H
Q 036466 127 IINSVTGG-----NHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-K 196 (727)
Q Consensus 127 ll~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~ 196 (727)
+....... .......+++.+.+... ..+++-++|||+++.......+.+..++-...+.+.+|+++.+. .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 32221110 00112223322222111 11345689999998888777888888876655666666665442 2
Q ss_pred HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 197 VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
+...+ ......+.+..++.++...++...+...+.. ...+.+..+++.++|.+..+.....
T Consensus 163 ll~tI--~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 163 VPATI--LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhHHH--HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22222 1223678999999999999998876544332 2346778999999999876554443
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.51 E-value=6e-07 Score=94.03 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCC-------CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDG-------ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
....++.|++++++++.+++..+... .-..++-+.++|++|+|||++|+.++.. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 33456889999999999887543110 1123567999999999999999999873 33332 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhh---cC--C
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLL---LG--G 182 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l---~~--~ 182 (727)
.++...... .........+...-...+.+|+||+++... ......+...+ .. .
T Consensus 190 --~~l~~~~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKYIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHhhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111111110 011111122222223467899999996531 11112222222 21 1
Q ss_pred CCCCEEEEecCchHHH-HHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 183 AEGSKILVTTRSNKVA-LIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 183 ~~~~~iliTsr~~~~~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
..+.+||.||...... .... .......+.++..+.++..++|+............ ....+++.+.|.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~ 327 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGA 327 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCC
Confidence 3467788888754322 1111 11223578999999999999998876443222111 135677777664
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=3.7e-06 Score=95.36 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=115.1
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
-.++||.+..++.|..++... .-.+.++++|+.|+||||+|+.+++...-....... .| +.-...+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pC----g~C~sC~~~ 81 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PC----GECDSCVAL 81 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CC----cccHHHHHH
Confidence 356899999999999999762 335678999999999999999998742111100000 00 000001111
Q ss_pred HHHhc-------CCCCCCCChHHHHHHHHH----HhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-
Q 036466 128 INSVT-------GGNHGNLDPDRLQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN- 195 (727)
Q Consensus 128 l~~l~-------~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~- 195 (727)
...-. .........+++.+...+ -..++.-++|||+++.......+.++..+-.....+.+|++|.+.
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 00000 000001122222221111 122445578899999998888888888887766666666655433
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
.+...+ ......|++..++.++..+++.+.+...+.. ...+.+..|++.++|.+..+
T Consensus 162 kLl~TI--rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTI--RSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHH--HhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 222222 1233789999999999999998876443322 23456688999999988433
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=6.6e-06 Score=90.33 Aligned_cols=201 Identities=14% Similarity=0.184 Sum_probs=116.2
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE-ecCCCCHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC-VSEDSGKRQIMT 125 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~ 125 (727)
.-..++|-+..++.|.+++... .-...+.++|++|+||||+|+.+++...-....+...|.. ....++.-...+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 3457899999999999988662 3356799999999999999998887422111111000110 000111111111
Q ss_pred HHHHHhcC-----CCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-h
Q 036466 126 KIINSVTG-----GNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-N 195 (727)
Q Consensus 126 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-~ 195 (727)
.+...-.. ........+++.+.+.+. ..+.+-++|+|+++.......+.+..++-...+.+.+|+++.. .
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11110000 000111233333322222 1234457899999988877788888888776556665555533 3
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
.+...+ ......++..+++.++...++.+.+...+.. ...+.++.+++.++|..--+
T Consensus 169 kLl~TI--~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 169 KIPATI--ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhhHHH--HhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHH
Confidence 222221 2233789999999999999998876543322 23467789999999966533
No 114
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=4.7e-08 Score=92.48 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=116.2
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCC-CCCCcccChhhcccccC
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGD-CLELEELPKDIRYLVSL 503 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L 503 (727)
-+.-+++|+.+.++.+.-..+......-+.|+.+..+... +...|. +-....+..+-... ....+.....+..++.|
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred chHHhhhhheeeeeccchhheeceeecCchhheeeeeccc-cccccc-ccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 3445577888888887755444333334667888777544 222221 22222222221111 11112222344556778
Q ss_pred ceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccccc
Q 036466 504 RMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECE 583 (727)
Q Consensus 504 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 583 (727)
+.+++++|.++.+.....-.|.++.|++++|.... + ..+..+++|..|++++|... .+..+-..+.++++|.+++|.
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 88888888888777777777888888888864432 3 34777888888888877543 222333345555555555431
Q ss_pred cccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCcc-ccCccCccccccccc
Q 036466 584 SLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFM-ALPGSLKDLEALENL 662 (727)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L 662 (727)
+.++.. + +.+=+|+.|++++|++-. .-...++++|.|+.+
T Consensus 364 ------------------------------------iE~LSG-L--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 364 ------------------------------------IETLSG-L--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred ------------------------------------Hhhhhh-h--HhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 111111 1 345567888888776432 123457788888888
Q ss_pred ccccccccc
Q 036466 663 VIGICPKLS 671 (727)
Q Consensus 663 ~l~~~~~~~ 671 (727)
.|.+|++..
T Consensus 405 ~L~~NPl~~ 413 (490)
T KOG1259|consen 405 RLTGNPLAG 413 (490)
T ss_pred hhcCCCccc
Confidence 888887543
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.47 E-value=1e-06 Score=92.55 Aligned_cols=182 Identities=17% Similarity=0.135 Sum_probs=99.5
Q ss_pred CCCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
...++.|++++++++.+.+..+.. .+-..++.|.++|++|+|||++|+.+++. .... |+.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 345678999999999988743211 11134677999999999999999999873 2222 222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-----------ChhhHHHHHHhh---cC--CC
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-----------DPRAWGELKSLL---LG--GA 183 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~~~~~~~~~~l---~~--~~ 183 (727)
.++ +... .+.....+...+...-...+.+|+||+++.. +......+...+ .. ..
T Consensus 199 -~~l----~~~~-----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SEL----VQKF-----IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHH----hHhh-----ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 1111 1111111222222222346789999999753 111111222322 21 12
Q ss_pred CCCEEEEecCchHHH-HHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC
Q 036466 184 EGSKILVTTRSNKVA-LIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG 252 (727)
Q Consensus 184 ~~~~iliTsr~~~~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 252 (727)
.+..||.||...... ..+.. ......+.++..+.++..++|+............. ...+++.+.|
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g 335 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEG 335 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCC
Confidence 356677777654322 22211 12246799999999999999998764332222111 3456666655
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=98.47 E-value=1.1e-05 Score=78.57 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=93.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.|+|++|+|||.|++.+++. ....-..++|++... +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999998873 333334566776532 1111 0 1122222222
Q ss_pred eEEEEEcCCCCCC-hhhHHH-HHHhhcC-CCCCCEEEEecCchHHHHH------HhhcCCCCceecCCCChhhHHHHHHH
Q 036466 156 RYLLVMDDVWNED-PRAWGE-LKSLLLG-GAEGSKILVTTRSNKVALI------MATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 156 ~~LlvlDd~~~~~-~~~~~~-~~~~l~~-~~~~~~iliTsr~~~~~~~------~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
. ++|+||++... ...|.. +...+.. ...|..+|+|++...-... .........++++++++++..+++++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67889997542 123332 3333322 1246678888875432111 01111236789999999999999996
Q ss_pred hhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 227 CAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
.+...+ ....+++..-|++.+.|..-.+..+...+
T Consensus 178 ka~~~~---~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG---LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC---CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654332 22335777888888888877766555444
No 117
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=3.6e-06 Score=85.30 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=135.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..+...+||+.+.+.+..++....+. .....+-|.|.+|.|||.+...++.+......-..++|+.+..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 45678999999999999999776543 4567899999999999999999998543333334668999988778888999
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCC--ceEEEEEcCCCCCChhhHHHHHH-hhcCCCCCCEEEEecCchHH-----
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNG--KRYLLVMDDVWNEDPRAWGELKS-LLLGGAEGSKILVTTRSNKV----- 197 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~~~~-~l~~~~~~~~iliTsr~~~~----- 197 (727)
.++..+...........+....+.+.... ..+|+|+|+.|......-..+.. +.+...+++++|+.---..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 99888732222222224455555555544 46899999986542111112222 22345677776653321111
Q ss_pred -HHHHh--hcCCCCceecCCCChhhHHHHHHHhhccCCCCC-C-hhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 198 -ALIMA--TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEK-H-PNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 198 -~~~~~--~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
...+. .......+..++.+.++..++|+.+........ . ...+-.|++++...|-+-.|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 122346788899999999999998774333222 1 1233334444444555555555554443
No 118
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.46 E-value=9.2e-06 Score=76.26 Aligned_cols=185 Identities=15% Similarity=0.182 Sum_probs=115.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH---
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS--- 151 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~--- 151 (727)
..+.+.++|.-|+|||++.+.+.... .+. ....-+...+..+...+...++.++.. ..........+.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~~d-~~~~v~i~~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--NED-QVAVVVIDKPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--CCC-ceEEEEecCcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHHHHHH
Confidence 34589999999999999999444421 111 111222334455777889999999865 2333444333443333
Q ss_pred -h-CCce-EEEEEcCCCCCChhhHHHHHHhhcCCCCC---CEEEEecCch----HHHHHHh-hcCCCCc-eecCCCChhh
Q 036466 152 -L-NGKR-YLLVMDDVWNEDPRAWGELKSLLLGGAEG---SKILVTTRSN----KVALIMA-TMRGTTG-YNLQELPYKD 219 (727)
Q Consensus 152 -l-~~~~-~LlvlDd~~~~~~~~~~~~~~~l~~~~~~---~~iliTsr~~----~~~~~~~-~~~~~~~-~~l~~l~~~~ 219 (727)
. ++++ ..+++|+++.......+.++........+ -+|+..-..+ ....... ....... |.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 3 3455 99999999887666666655544322111 2233332221 0000111 1111233 9999999999
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 220 CLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
+..|++....+.+.+..-...++...|+....|.|.+++.++...
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 999999988777666555566778899999999999999887544
No 119
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1e-05 Score=89.50 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=118.4
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-..++|.+..++.|..++... .-.+.+.++|++|+||||+|+.++....-... +... ...++.-...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~-~~~~----~~~Cg~C~~C~ 82 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNS-DKPT----PEPCGKCELCR 82 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCc-CCCC----CCCCcccHHHH
Confidence 34457899999999999998763 23457899999999999999999874211110 0000 01111122222
Q ss_pred HHHHHhcC-----CCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-
Q 036466 126 KIINSVTG-----GNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN- 195 (727)
Q Consensus 126 ~ll~~l~~-----~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~- 195 (727)
.+...... ........+.+.+.+.... .+++-++|||+++.......+.+...+-.....+.+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 22222111 0001122333333332211 1345588999999988778888888887654556555555433
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.+...+ ......+....++.++....+.+.+...+.. ...+.+..+++.++|.+..+....
T Consensus 163 ~llpTI--rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 163 RVLPTI--ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hhhHHH--HhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222211 1223778889999999998888766443322 223567899999999886554433
No 120
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.3e-07 Score=100.87 Aligned_cols=195 Identities=25% Similarity=0.277 Sum_probs=105.8
Q ss_pred EEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCC-CCCEeecCCCCCCcccChhhcccccCceeEecccc
Q 036466 434 VLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQ-SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQ 512 (727)
Q Consensus 434 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 512 (727)
.+++..+.+...+..+..+..++.|++..+. +..+++....+. +|+.|+++.| .+..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 4566666654333344455667777777666 555665555553 6777777663 344555566667777777777777
Q ss_pred cccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccccccccccccc
Q 036466 513 KSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNME 592 (727)
Q Consensus 513 ~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 592 (727)
+..++...+.+++|+.|.+++| .+..+|.....+..|+.|.+++|... ..+..+..+.++..+.+..+....
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~------ 246 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED------ 246 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee------
Confidence 7766655556667777777664 44555554444555667766665422 333445555555555544332111
Q ss_pred ccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc
Q 036466 593 MKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA 648 (727)
Q Consensus 593 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~ 648 (727)
++.....+++++.|++++|. .++++. + +...+++.|+++++.....
T Consensus 247 ------~~~~~~~l~~l~~L~~s~n~-i~~i~~-~--~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 247 ------LPESIGNLSNLETLDLSNNQ-ISSISS-L--GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------ccchhccccccceecccccc-cccccc-c--cccCccCEEeccCcccccc
Confidence 12333344455555555542 222222 2 3445555555555544433
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.2e-05 Score=89.02 Aligned_cols=184 Identities=13% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh---------------------Hhc
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV---------------------EEH 105 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~---------------------~~~ 105 (727)
.-.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.++....- ..+
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 3357899999999999999762 34567899999999999999888873210 011
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCC
Q 036466 106 FELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEG 185 (727)
Q Consensus 106 f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~ 185 (727)
|+. ..++...... .+..++++.++.... ..+++=++|||+++.......+.+...+-...+.
T Consensus 90 ~n~-~~ld~~~~~~-vd~Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 90 YNI-HELDAASNNS-VDDIRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred Cce-EEecccccCC-HHHHHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 221 1222211111 122223333221110 1123447899999998877888888888776566
Q ss_pred CEEEEec-CchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 186 SKILVTT-RSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 186 ~~iliTs-r~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+.+|++| +...+...+. .....++..+++.++...++.+.+...+.. ...+.+..|++.++|...-+.
T Consensus 152 tifIL~tt~~~kIl~tI~--SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 152 AIFILATTEKHKILPTIL--SRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred eEEEEEeCCchhchHHHH--hhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 6666555 3333332221 223789999999999999998877554432 233567889999999775443
No 122
>PF14516 AAA_35: AAA-like domain
Probab=98.44 E-value=1.3e-05 Score=82.30 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=122.6
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-----CC
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-----SG 119 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-----~~ 119 (727)
+.+.+.+|.|...-+++.+.+.++ ...+.|.|+..+|||+|...+.+. .+..--..+++++... .+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCC
Confidence 344456789997777788777653 248999999999999999999884 3333234557877542 24
Q ss_pred HHHHHHHHHHHhc----CCCC-------CCCChHHHHHHHHHHh-C--CceEEEEEcCCCCCCh--hhHHHHHHhhcC--
Q 036466 120 KRQIMTKIINSVT----GGNH-------GNLDPDRLQKVLRDSL-N--GKRYLLVMDDVWNEDP--RAWGELKSLLLG-- 181 (727)
Q Consensus 120 ~~~~~~~ll~~l~----~~~~-------~~~~~~~~~~~l~~~l-~--~~~~LlvlDd~~~~~~--~~~~~~~~~l~~-- 181 (727)
...+++.++..+. .... ...........+.+.+ . +++++|+||+++..-. ....++...++.
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 5555555555442 2110 0112223344444432 2 5899999999976421 111233333322
Q ss_pred -CC---C--C-CEEEE-ecCchHHHHHH--hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcC
Q 036466 182 -GA---E--G-SKILV-TTRSNKVALIM--ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCR 251 (727)
Q Consensus 182 -~~---~--~-~~ili-Tsr~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (727)
.. + . -++++ .+......... ........+++++|+.+|+..|+++.... .. ....++|...++
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~---~~~~~~l~~~tg 230 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS---QEQLEQLMDWTG 230 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC---HHHHHHHHHHHC
Confidence 11 1 1 12222 22111111100 11222367999999999999999876422 11 233799999999
Q ss_pred CchHHHHHHHhhhcC
Q 036466 252 GIPLAVRTVGSLLYG 266 (727)
Q Consensus 252 g~Plal~~~a~~l~~ 266 (727)
|||+.+..++..+..
T Consensus 231 GhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 231 GHPYLVQKACYLLVE 245 (331)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999965
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.41 E-value=7.1e-06 Score=84.59 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=91.5
Q ss_pred cCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 43 HSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 43 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
-.|..-.+++|.++..+.+..++... ..+.++.++|++|+|||++|+.+++. ... ...+++... .. .+
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~-~~ 82 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CR-ID 82 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-cc-HH
Confidence 34445567899999999999998752 34568888999999999999999873 211 223444443 12 22
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCCCCCCEEEEecCchHHH-HH
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVA-LI 200 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~-~~ 200 (727)
..+..+..+... . ...+.+-++|||+++.. .......+...+.....++++|+|+...... ..
T Consensus 83 ~i~~~l~~~~~~--------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~ 147 (316)
T PHA02544 83 FVRNRLTRFAST--------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEP 147 (316)
T ss_pred HHHHHHHHHHHh--------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHH
Confidence 222212111000 0 01134568899999876 3323334444454445677888888654321 11
Q ss_pred HhhcCCCCceecCCCChhhHHHHHHH
Q 036466 201 MATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
.. .....+.++..+.++..+++..
T Consensus 148 l~--sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 148 LR--SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HH--hhceEEEeCCCCHHHHHHHHHH
Confidence 11 1235677777888887766554
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=1.5e-05 Score=87.01 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=116.7
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
.-.+++|-+..++.|..++... .-.+.+.++|+.|+||||+|+.++....-...... ..|... ...++
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~ 81 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKS 81 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHH
Confidence 3457899999999999999762 34568999999999999999999874211110000 000000 00011
Q ss_pred HHHHhcC-----CCCCCCChHHHHHHHHH----HhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc-hH
Q 036466 127 IINSVTG-----GNHGNLDPDRLQKVLRD----SLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-NK 196 (727)
Q Consensus 127 ll~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-~~ 196 (727)
+...-.. ........+++.+.... -..+++-++|+|+++......++.+...+-...+.+.+|++|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 1100000 00001122222222211 11245568899999998877888888887765566666665543 22
Q ss_pred HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 197 VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
+...+ ......+...+++.++..+++.+.+...+.. ..++++..|++.++|.+..+.
T Consensus 162 L~~tI--~SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 162 LPATI--KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hHHHH--HHhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 22221 1223678999999999999998877544332 334677889999999885443
No 125
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2e-05 Score=86.55 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=115.3
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
|..-.+++|.+..++.|.+++... .-.+...++|+.|+|||++|+.++....-...-+. ..++.-...
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHH
Confidence 334467999999999999999763 34567889999999999999998863111110000 011111111
Q ss_pred HHHHHHhcCC-----CCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 125 TKIINSVTGG-----NHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 125 ~~ll~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
+.+....... .......++..+.+.+. ..++.-++|||+++......+..+...+-...+.+.+|++|...
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1111110000 00011222222222111 12456688999999888778888888776654555555544332
Q ss_pred -HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 196 -KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 196 -~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
.+...+ ......++..+++.++....+...+...+.. ...+.+..|++.++|.+..+.
T Consensus 160 ~ki~~tI--~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 160 HKIPATI--LSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hhCcHHH--HhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 222211 1223678899999999999998877544332 234667888999998775443
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=88.53 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=115.6
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-------------------C
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-------------------F 106 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------f 106 (727)
..-.+++|.+..++.|.+++... .-.+...++|+.|+||||+|+.++....-... +
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 33457999999999999998762 34567899999999999999998874111110 0
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCC
Q 036466 107 ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS-LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEG 185 (727)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~ 185 (727)
..++.++......+.+ .+++...+ ... ..++.=++|||+++.......+.+...+-...+.
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~-----------------~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~ 149 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENV-----------------KYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH 149 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHH-----------------HhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC
Confidence 0011111111111111 12222211 100 1134457889999988877888888888765566
Q ss_pred CEEEEecCc-hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch-HHHHHHHh
Q 036466 186 SKILVTTRS-NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP-LAVRTVGS 262 (727)
Q Consensus 186 ~~iliTsr~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~ 262 (727)
+.+|++|.+ ..+...+. .....++.++++.++....+...+...+.. ...+.+..|++.++|.. .++..+-.
T Consensus 150 ~~fIl~t~~~~kl~~tI~--SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 150 VKFIFATTEPHKVPITIL--SRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred eEEEEEeCChhhhhHHHH--HhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666655543 33332211 123788999999999999888766444322 23466788999999976 45555433
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.39 E-value=1.9e-05 Score=74.62 Aligned_cols=130 Identities=28% Similarity=0.354 Sum_probs=79.0
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.+.++....++|.+++.+.|.+-...-..+ .+..-+.+||..|+|||++++++......++ .--|.+...
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~---- 89 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE---- 89 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH----
Confidence 444556678999999999998776554433 4566788999999999999999988432222 112222211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCC----CCCCEEEEecCchH
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG----AEGSKILVTTRSNK 196 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~----~~~~~iliTsr~~~ 196 (727)
.-.+...+.+.++. ...+++|++||+-- .....+..+.+.|-.. ..+..|..||-.++
T Consensus 90 ---------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 90 ---------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 11222233333332 24689999999832 2334566666666542 33555666776555
Q ss_pred HH
Q 036466 197 VA 198 (727)
Q Consensus 197 ~~ 198 (727)
+.
T Consensus 153 Lv 154 (249)
T PF05673_consen 153 LV 154 (249)
T ss_pred cc
Confidence 44
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.39 E-value=3e-06 Score=97.36 Aligned_cols=188 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceE-EEEecCCCCH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKI-WICVSEDSGK 120 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~-~~~~~~~~~~ 120 (727)
..-..++||+.++.++...|... ....++++|++|+||||+|+.++........ .+..+ .++.+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-
Confidence 33467899999999999988662 2345779999999999999999984211100 11222 232221000
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCCC-------hhhHH-HHHHhhcCCCCCCEEEEe
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNED-------PRAWG-ELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~-------~~~~~-~~~~~l~~~~~~~~iliT 191 (727)
+......-...+...+.+.. .+.+++|+||+++... ..+.. .+...+.. ...++|-+
T Consensus 257 ------------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 257 ------------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred ------------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 00000000111222222222 1468999999996642 11111 12222222 23566666
Q ss_pred cCchHHHHH----HhhcCCCCceecCCCChhhHHHHHHHhhccCCC-CCChhHHHHHHHHHHHcCCch
Q 036466 192 TRSNKVALI----MATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQ-EKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 192 sr~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 254 (727)
|...+.... ....+.++.+.+++++.+++.++++.....-.. .......++...+++.+.+..
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 665433211 112234578999999999999997544322111 112233455667777776543
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.38 E-value=8e-06 Score=90.70 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
|.....++|++..+..+.+.+.. .....++|+|++|+||||+|+.++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 34445789999999998887754 23457999999999999999998864
No 130
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=1.5e-07 Score=85.55 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=48.9
Q ss_pred cCCCccccccccCCCCcCcEEeccCCccccccCcccc-CCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccc
Q 036466 438 TNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL 516 (727)
Q Consensus 438 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 516 (727)
..+.|...+. +-++.++++|++++|. +..+. .++ .+.+|+.|++++|.+. .+. .+..+++|+.|++++|.++.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-
T ss_pred cccccccccc-cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc
Confidence 3444444432 4456678999999988 44443 355 5788999999986544 443 577789999999999999877
Q ss_pred cccC-CCCCCCcEEeccccCC--chhhhhhccCCCCcCeeecccCcCCCcC---ccccccCcccceeeccc
Q 036466 517 ESGI-GCLSSLRFLMISNCGN--LEYLFEDIDQLSVLRSLVVNACPRLNLL---PPAMKYLSSLERLIFDE 581 (727)
Q Consensus 517 ~~~~-~~l~~L~~L~l~~~~~--~~~l~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~ 581 (727)
...+ ..+++|++|.+++|.. +..+ ..+..+++|+.|++.+|+....- ...+..+|+|+.|+-..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5444 3588999999988743 2222 45677899999999998765321 12355678888877554
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.32 E-value=6.9e-06 Score=93.84 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=87.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh---cC-CceEE-EEecCCCCHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE---HF-ELKIW-ICVSEDSGKRQI 123 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~~~-~~~~~~~~~~~~ 123 (727)
..++||++++.++.+.|... ...-++++|++|+|||++|+.++....... .+ +..+| ++++ .+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HH
Confidence 46899999999999888652 334578999999999999999998421111 11 22333 2211 11
Q ss_pred HHHHHHHhcCCCCCCCChHH-HHHHHHHHhCCceEEEEEcCCCCCC--------hhh-HHHHHHhhcCCCCCCEEEEecC
Q 036466 124 MTKIINSVTGGNHGNLDPDR-LQKVLRDSLNGKRYLLVMDDVWNED--------PRA-WGELKSLLLGGAEGSKILVTTR 193 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~~~--------~~~-~~~~~~~l~~~~~~~~iliTsr 193 (727)
+. +.... .+.++ +...+.+.-...+.+|+||+++..- ..+ .+.+...+.. ...++|-+|.
T Consensus 250 ----~a---~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt 319 (731)
T TIGR02639 250 ----LA---GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTT 319 (731)
T ss_pred ----hh---hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecC
Confidence 10 00011 11222 2222222223457899999997431 011 1122222222 2345555555
Q ss_pred chHHHH----HHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 194 SNKVAL----IMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 194 ~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
..+... ..........+.++.++.+++.++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 433211 11122344789999999999999998654
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=98.31 E-value=5.6e-05 Score=75.70 Aligned_cols=166 Identities=12% Similarity=0.144 Sum_probs=86.0
Q ss_pred ceeecchhHHHHHHHHh--------c-CCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 50 DIIGRYEDGEKIIELLT--------Q-TSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~--------~-~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.++|-++..+++.++.. . ..-..+.....+.++|++|+|||++|+.++......+.-...-|+.++ .
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~ 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----R 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----H
Confidence 47787666665544421 1 000111223458899999999999999998732111111111133333 1
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC---------ChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE---------DPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
.+ +.....+. ........+.+. ..-+|+||+++.. .......+...+.....+.+||++
T Consensus 100 ~~----l~~~~~g~-----~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 DD----LVGQYIGH-----TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred HH----HHHHHhcc-----chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12 22222111 111222233332 2359999999753 112223344444444455667777
Q ss_pred cCchHHHHHHh-----hcCCCCceecCCCChhhHHHHHHHhhccC
Q 036466 192 TRSNKVALIMA-----TMRGTTGYNLQELPYKDCLSLFMKCAFKV 231 (727)
Q Consensus 192 sr~~~~~~~~~-----~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 231 (727)
+.......... .......+..++++.+|..+++.+.+...
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 65433221110 11223679999999999999998877443
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.31 E-value=1.8e-05 Score=78.27 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
.+.+.+|+.++..|..++..... .-+..|.|+|.+|.|||.+++++.+.. --..+|+++.+.++.+.+++++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 45688999999999999866431 245677999999999999999999853 1234699999999999999999
Q ss_pred HHHhcCCCCCCCChH-------HHHHHHHH--HhC--CceEEEEEcCCCCCCh---hhHHHHHHhh-cCCCCCCEEEEec
Q 036466 128 INSVTGGNHGNLDPD-------RLQKVLRD--SLN--GKRYLLVMDDVWNEDP---RAWGELKSLL-LGGAEGSKILVTT 192 (727)
Q Consensus 128 l~~l~~~~~~~~~~~-------~~~~~l~~--~l~--~~~~LlvlDd~~~~~~---~~~~~~~~~l-~~~~~~~~iliTs 192 (727)
+.+.+..+.++...+ .....+.+ ... ++.++||+|+++.... .-+..+.+.- .-..+.. +|+++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEe
Confidence 999963333322221 22223333 111 3589999999966432 1122222211 1123333 44444
Q ss_pred CchHHHHHH--hhcCCCCceecCCCChhhHHHHHHHh
Q 036466 193 RSNKVALIM--ATMRGTTGYNLQELPYKDCLSLFMKC 227 (727)
Q Consensus 193 r~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~l~~~~ 227 (727)
...-..... .......++..+.-+.+|...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 432222111 12223356788899999999999763
No 134
>PRK06620 hypothetical protein; Validated
Probab=98.31 E-value=2.2e-05 Score=74.95 Aligned_cols=143 Identities=14% Similarity=0.033 Sum_probs=84.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
+.+.|||++|+|||+|++.+++.. . ..|+.... .. . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~-----~~~~~~~~------~~-----------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--N-----AYIIKDIF------FN-----------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--C-----CEEcchhh------hc-----------------h-------hHH-hcC
Confidence 679999999999999999776632 1 12221000 00 0 001 123
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH----HHHhhcCCCCceecCCCChhhHHHHHHHhhccCC
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA----LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVG 232 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 232 (727)
-++++||++..+...+..+...+.. .|..+|+|++..... .........-.++++++++++..+++++.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788899985543334444443433 456788888754221 1112222235899999999999888888764322
Q ss_pred CCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 233 QEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
. .-.+++++-|++.+.|.--.+.-+-.
T Consensus 165 l---~l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 165 V---TISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred C---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 23346677888888776665554433
No 135
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.30 E-value=1.9e-05 Score=78.58 Aligned_cols=165 Identities=13% Similarity=0.150 Sum_probs=83.4
Q ss_pred ceeecchhHHHHHHHHhcC---------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 50 DIIGRYEDGEKIIELLTQT---------SDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~---------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.++|.+...+++.+..... .-...+....+.++|++|+||||+|+.++......+......++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788777766665442111 001123346788999999999999999987321111111112333321
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC--------hhhHHHHHHhhcCCCCCCEEEEec
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED--------PRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--------~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
.++ .... .........+.+.+. ...+|+||+++... ......+...+........+++++
T Consensus 83 ~~l----~~~~-----~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADL----VGEY-----IGHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHh----hhhh-----ccchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111 1111 111112222333222 23588999997632 112233444343333334455555
Q ss_pred CchHHHHHH----h-hcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 193 RSNKVALIM----A-TMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 193 r~~~~~~~~----~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
...+..... . .......+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 443221110 0 1111256899999999999999987743
No 136
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.29 E-value=4.9e-05 Score=76.19 Aligned_cols=165 Identities=12% Similarity=0.140 Sum_probs=86.0
Q ss_pred ceeecchhHHHHHHHHh---c------CCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 50 DIIGRYEDGEKIIELLT---Q------TSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~---~------~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.++|-++..+++.+... - ..-....+..-+.++|++|+|||++|+.++......+.....-|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 47787766666554321 0 0000011233689999999999999988876321111111112333321
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC---------ChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE---------DPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
.+ ++..+.+. ........+.+. .+-+|+||+++.. .......+...+.....+.+||++
T Consensus 99 ~~----l~~~~~g~-----~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 99 DD----LVGQYIGH-----TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred HH----HhHhhccc-----chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12 22222111 112222333332 3468899999743 122234455555544456667776
Q ss_pred cCchHHHHHHh-----hcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 192 TRSNKVALIMA-----TMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 192 sr~~~~~~~~~-----~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
+.......... .......+.+++++.+|..+++...+..
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 65432221110 0111357999999999999999887744
No 137
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.2e-06 Score=98.21 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=63.4
Q ss_pred CcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccc
Q 036466 455 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISN 533 (727)
Q Consensus 455 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 533 (727)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.++ .+|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455666666655556666666666666666666555566666666666666666666665 4555566666666666666
Q ss_pred cCCchhhhhhccCC-CCcCeeecccCcC
Q 036466 534 CGNLEYLFEDIDQL-SVLRSLVVNACPR 560 (727)
Q Consensus 534 ~~~~~~l~~~l~~l-~~L~~L~l~~~~~ 560 (727)
|.....+|..+..+ .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 65555566555442 3455666666543
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.28 E-value=4.8e-05 Score=82.11 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=97.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL 152 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l 152 (727)
....+.|+|++|+|||+|++.+++. ....+ -.++|+++. ++..++...+.. ... ..+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~~----~~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NTM----EEFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----CcH----HHHHHHH
Confidence 3456999999999999999999984 43333 235566442 334444444421 112 2233333
Q ss_pred CCceEEEEEcCCCCCCh-----hhHHHHHHhhcCCCCCCEEEEecCchHHH-----HH-HhhcCCCCceecCCCChhhHH
Q 036466 153 NGKRYLLVMDDVWNEDP-----RAWGELKSLLLGGAEGSKILVTTRSNKVA-----LI-MATMRGTTGYNLQELPYKDCL 221 (727)
Q Consensus 153 ~~~~~LlvlDd~~~~~~-----~~~~~~~~~l~~~~~~~~iliTsr~~~~~-----~~-~~~~~~~~~~~l~~l~~~~~~ 221 (727)
+ +.-+|+|||++.... .++..+...+.. .+..+|+|+...... .. .........+++++.+.++..
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 344889999976421 122222222322 244578877654211 11 112222357999999999999
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 222 SLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
+++++.+...+ ....++++..|++.++|..-.+.-+.
T Consensus 287 ~il~~~~~~~~---~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 287 AILKKKAEEEG---IDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 99999875432 22345678889999998877655443
No 139
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.3e-06 Score=97.68 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCCEeecCCCCCCcccChhhcccccCceeEecccccc-cccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecc
Q 036466 478 SLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKS-LLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVN 556 (727)
Q Consensus 478 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~ 556 (727)
.++.|+|++|...+.+|..+..+.+|+.|++++|.+. .+|..++.+++|+.|++++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778899988888889999999999999999999887 677788999999999999988777888889999999999999
Q ss_pred cCcCCCcCccccccC-cccceeecccccc
Q 036466 557 ACPRLNLLPPAMKYL-SSLERLIFDECES 584 (727)
Q Consensus 557 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 584 (727)
+|.+.+.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 998888888877653 4567777777644
No 140
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.5e-06 Score=64.53 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=43.1
Q ss_pred CcccEEEecCCCCccccCccCccccccccccccccccccccCccCCCCCccCeeeccCCc
Q 036466 633 KTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSSLPEGMHHLTTLKTLAIEECP 692 (727)
Q Consensus 633 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~c~ 692 (727)
|+|++|++++|.+....+..|.++++|++|++++|....--+..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 567888888875444334567788888888888776554444567788888888888875
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=0.00014 Score=77.62 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=97.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
...+.|+|++|+|||+|++.+++. ....+ ..++|+++ .++..++...+.. ...+ .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~-----~~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKE-----GKLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhc-----ccHH----HHHHHHH
Confidence 445999999999999999999984 33332 24567654 3455555555521 1222 2333333
Q ss_pred CceEEEEEcCCCCCC-----hhhHHHHHHhhcCCCCCCEEEEecC-chHHHHHH-----hhcCCCCceecCCCChhhHHH
Q 036466 154 GKRYLLVMDDVWNED-----PRAWGELKSLLLGGAEGSKILVTTR-SNKVALIM-----ATMRGTTGYNLQELPYKDCLS 222 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~-----~~~~~~~~~~l~~~~~~~~iliTsr-~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~ 222 (727)
.+.-+|++||++... +.++..+...+.. .+..+|+||. .+.....+ ........+.+++.+.+...+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 345689999997531 1122233222322 2446888774 33222111 112223578999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 223 LFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
++++.+...+. .-.++.+.-|++.+.|.--.+.-+.
T Consensus 271 IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 271 IARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHHHHH
Confidence 99988743322 2234677888888888766555443
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.18 E-value=7.3e-05 Score=79.69 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
...+.|+|++|+|||.|++++++. ..... -.++|+++ .++..++...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999984 33332 23556643 34444555554221 2222 233332
Q ss_pred CceEEEEEcCCCCCChh--hHHHHHHhhcCC-CCCCEEEEecCchHHH-HH-----HhhcCCCCceecCCCChhhHHHHH
Q 036466 154 GKRYLLVMDDVWNEDPR--AWGELKSLLLGG-AEGSKILVTTRSNKVA-LI-----MATMRGTTGYNLQELPYKDCLSLF 224 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~--~~~~~~~~l~~~-~~~~~iliTsr~~~~~-~~-----~~~~~~~~~~~l~~l~~~~~~~l~ 224 (727)
. .-+|+|||++..... ....+...+... ..+..+|+|+...... .. .........+.+++.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348889999764321 112222222211 1345678877643211 11 111222256899999999999999
Q ss_pred HHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 225 MKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
++.+...+. ...++.+..|++.+.|..-.+.-+.
T Consensus 278 ~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 278 QKKAEEEGL---ELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 988754332 2235677888999988877655443
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.18 E-value=8.2e-06 Score=94.39 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=87.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH---hcC-CceEEEEecCCCCHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE---EHF-ELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~~~~~~~~~~~~~~~ 124 (727)
..++||+++++++.+.|... ....+.++|++|+|||++|+.++...... ... +..+|. +. ...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l~----~~~-- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-LD----IGL-- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-ee----HHH--
Confidence 45899999999999999763 23457899999999999999998842111 011 233442 11 111
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-------hhhHHHH-HHhhcCCCCCCEEEEecCchH
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-------PRAWGEL-KSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------~~~~~~~-~~~l~~~~~~~~iliTsr~~~ 196 (727)
-+.+....+.-.+.+...+.+....++++|+||+++... ......+ ...+.. ...++|.+|...+
T Consensus 246 -----l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~e 318 (821)
T CHL00095 246 -----LLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDE 318 (821)
T ss_pred -----HhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHH
Confidence 111111121111122233333333468999999995321 0011122 222222 2355666666554
Q ss_pred HHHHH----hhcCCCCceecCCCChhhHHHHHHHh
Q 036466 197 VALIM----ATMRGTTGYNLQELPYKDCLSLFMKC 227 (727)
Q Consensus 197 ~~~~~----~~~~~~~~~~l~~l~~~~~~~l~~~~ 227 (727)
..... ........+.+...+.+++.++++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43211 11223467889999999998888653
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.17 E-value=6.6e-06 Score=86.50 Aligned_cols=162 Identities=19% Similarity=0.157 Sum_probs=91.7
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.++.|.+.+++++.+++..+.. ..-..++.++++|++|+|||++|+.++.. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 4567999999999988753211 01134567999999999999999999983 33332 222111
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------h---hhHHHHHHhhcC--CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------P---RAWGELKSLLLG--GAEG 185 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~---~~~~~~~~~l~~--~~~~ 185 (727)
++.. .. .......+...+.......+.+|+||+++... . ..+..+...+.. ...+
T Consensus 252 eL~~----k~-----~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQ----KY-----LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhh----hh-----cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 11 11111122233333334578999999985321 0 011222222222 1335
Q ss_pred CEEEEecCchHHHHH-Hh-hcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 186 SKILVTTRSNKVALI-MA-TMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 186 ~~iliTsr~~~~~~~-~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
..||.||........ +. .......+.+...+.++..++|......
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 678877765433322 21 1123467899999999999999876533
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=0.00013 Score=79.00 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcC--CceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHF--ELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
..++|+|.+|+|||.|++.+++. ....+ -.++|++. .++..++...+.. ... ..+.+.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccH----HHHHHHhhc
Confidence 35899999999999999999984 33322 34556643 3444455444421 111 223333322
Q ss_pred ceEEEEEcCCCCCCh-----hhHHHHHHhhcCCCCCCEEEEecCchH--HH---H-HHhhcCCCCceecCCCChhhHHHH
Q 036466 155 KRYLLVMDDVWNEDP-----RAWGELKSLLLGGAEGSKILVTTRSNK--VA---L-IMATMRGTTGYNLQELPYKDCLSL 223 (727)
Q Consensus 155 ~~~LlvlDd~~~~~~-----~~~~~~~~~l~~~~~~~~iliTsr~~~--~~---~-~~~~~~~~~~~~l~~l~~~~~~~l 223 (727)
.=+|+|||++.... .++..+...+.. .+..|||||+... +. . ........-.+++...+.+.-.++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e--~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHN--ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHh--cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 34788999976522 222233333332 3456888887631 11 1 111223346789999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 224 FMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
+++.+...+.. ...+++.-|++.+.+..-.|.-+..
T Consensus 455 L~kka~~r~l~---l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 455 LRKKAVQEQLN---APPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHhcCCC---CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99887543322 2346677777877776655554443
No 146
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.4e-05 Score=77.78 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=98.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC-------CC-CCCCChHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG-------GN-HGNLDPDRLQ 145 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~-~~~~~~~~~~ 145 (727)
.-++.+.++|+.|+|||++|+.++....-....+. ..++.-...+.+...-.+ .. ......+++.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 45678999999999999999999874211110000 000000111111110000 00 0112333333
Q ss_pred HHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHH
Q 036466 146 KVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCL 221 (727)
Q Consensus 146 ~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 221 (727)
+.+.... .+++=++|||+++.+.....+.+...+-...+++.+|++|.+...... +.......+.+.+++.+++.
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~-TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLP-TIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcH-HHHhhceeeeCCCcCHHHHH
Confidence 3222211 123335567999999988888888888776667777777766533211 11122378999999999999
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 222 SLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
+++..... . ...+.+..++..++|.|.....+
T Consensus 172 ~~L~~~~~--~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 172 QWLQQALP--E-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHhcc--c-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 99986431 1 11234567789999999755444
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=2.2e-05 Score=88.50 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=89.4
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-c---CCceEEEEecCCCCHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-H---FELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~---f~~~~~~~~~~~~~~~~~~ 124 (727)
..++||++++.++.+.|... ....+.++|++|+|||++|+.++....... . .+..+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 46899999999999988773 223467899999999999999987421111 1 12333321 111
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCC--------ChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNE--------DPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~--------~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
.+ +.+....+ +.++....+.+.+ +..+.+|+||+++.. .+.+...+...+... ...++|-+|...
T Consensus 252 -~l---laG~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 -SL---LAGTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred -HH---hcccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 11 11111111 2222222222222 346789999999642 112222223322222 235566565554
Q ss_pred HHHHH----HhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 196 KVALI----MATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 196 ~~~~~----~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
+.... ....+.++.+.++..+.+++.++++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43211 1112345789999999999999998654
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=0.00021 Score=76.11 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=90.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.|+|++|+|||+|++.+++. .......++|++. .++...+...+... . .+.+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456899999999999999999984 3333344566643 34444555554211 1 123333333 3
Q ss_pred eEEEEEcCCCCCCh-----hhHHHHHHhhcCCCCCCEEEEecCch-HHH----HHH-hhcCCCCceecCCCChhhHHHHH
Q 036466 156 RYLLVMDDVWNEDP-----RAWGELKSLLLGGAEGSKILVTTRSN-KVA----LIM-ATMRGTTGYNLQELPYKDCLSLF 224 (727)
Q Consensus 156 ~~LlvlDd~~~~~~-----~~~~~~~~~l~~~~~~~~iliTsr~~-~~~----~~~-~~~~~~~~~~l~~l~~~~~~~l~ 224 (727)
.-++++||++.... .++..+...+.. .+..||+||... ... ..+ ........+.+.+++.++..+++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 44788899966421 122222222222 355688888542 111 111 11222367899999999999999
Q ss_pred HHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 225 MKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
++.+...+. ...++++.-|++...+.-
T Consensus 281 ~~k~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 987754332 223455666777666554
No 149
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.13 E-value=3.6e-06 Score=81.83 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCChH------HHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED--SGKRQIMTKIINSVTGGNHGNLDPD------RLQKVL 148 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~------~~~~~l 148 (727)
..++|+|++|+|||||++++++..... +|+..+|+.+.+. .++.++++++...+.....+..... ...+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999864333 7888889887665 6888899888443322211211111 122222
Q ss_pred HHH-hCCceEEEEEcCCCC
Q 036466 149 RDS-LNGKRYLLVMDDVWN 166 (727)
Q Consensus 149 ~~~-l~~~~~LlvlDd~~~ 166 (727)
... -.++++++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 236899999999954
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.12 E-value=2.4e-05 Score=81.81 Aligned_cols=189 Identities=17% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|.+...+++.+.+..+-. .+-..++.+.++|++|+|||++|+.++.. .... |+.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~-----fi~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTAT-----FIRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEeh----
Confidence 35578999999998887643211 11134678999999999999999999873 2222 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhh----HHHHHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRA----WGELKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~----~~~~~~~l~~--~~~ 184 (727)
.++ .... .+.....+.+.+.......+.+|+||+++..- ... +..+...+.. ...
T Consensus 213 s~l----~~k~-----~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKY-----LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHh-----cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 1111 11111222233333444578999999986421 011 1122222222 124
Q ss_pred CCEEEEecCchHHH-HHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc-hHHHHHH
Q 036466 185 GSKILVTTRSNKVA-LIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI-PLAVRTV 260 (727)
Q Consensus 185 ~~~iliTsr~~~~~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 260 (727)
+..||.||...... .... .......+.++..+.++..++|+......+..... ...++++.+.|. |.-+..+
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCHHHHHHH
Confidence 56677777654322 2221 11234678999999999888888765432222111 234566666553 3334333
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00019 Score=72.77 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=115.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh-------------HhcCCceEEEEec
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV-------------EEHFELKIWICVS 115 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~~~~~~ 115 (727)
..++|.+...+.|.+.+... .-++...++|+.|+||+++|..++....- ...++-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 35889999999999999763 33579999999999999999988874211 1112223344221
Q ss_pred CCCCHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEE
Q 036466 116 EDSGKRQIMTKIINSVT--GGNHGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKI 188 (727)
Q Consensus 116 ~~~~~~~~~~~ll~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~i 188 (727)
....-...-...+...+ .........++.. .+.+.+ .+.+=++|+|+++.+.....+.+...+-... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000000111111 0111122333332 233333 2456689999999998888888888886544 4455
Q ss_pred EEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 189 LVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 189 liTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
|++|... .+.... ......+.+.++++++..+++.+...... .......++..++|.|......
T Consensus 157 ILi~~~~~~Ll~TI--~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTI--VSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHH--HhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 5555443 222222 12348899999999999999998642111 0112367889999999766543
No 152
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=4e-06 Score=62.30 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=39.8
Q ss_pred CcceEEEecCCCcccccc-ccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCC
Q 036466 430 KSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL 488 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 488 (727)
|+|++|++++|.+..+|. .|..+++|++|++++|.+...-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777777776664 56667777777777776443334566777777777777654
No 153
>PRK10536 hypothetical protein; Provisional
Probab=98.11 E-value=5.8e-05 Score=72.39 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe----cC-----
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV----SE----- 116 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~----~~----- 116 (727)
.+...+.+|......+..++.. ...|.+.|++|+|||+||.+++.+....+.|..++...- ++
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfL 123 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFL 123 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcC
Confidence 3334566799999998888865 238999999999999999998875333445554433211 00
Q ss_pred CCCHHHH----HHHHHHHhcCCCCCCCChHHHHHHH-----------HHHhCCce---EEEEEcCCCCCChhhHHHHHHh
Q 036466 117 DSGKRQI----MTKIINSVTGGNHGNLDPDRLQKVL-----------RDSLNGKR---YLLVMDDVWNEDPRAWGELKSL 178 (727)
Q Consensus 117 ~~~~~~~----~~~ll~~l~~~~~~~~~~~~~~~~l-----------~~~l~~~~---~LlvlDd~~~~~~~~~~~~~~~ 178 (727)
..+..+- +.-+.+.+..- ...+.....+ ..+++++. -+||+|+++..+..+...+.
T Consensus 124 PG~~~eK~~p~~~pi~D~L~~~----~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l-- 197 (262)
T PRK10536 124 PGDIAEKFAPYFRPVYDVLVRR----LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL-- 197 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH--
Confidence 0012211 12222222100 0001111111 12455654 49999999888765544444
Q ss_pred hcCCCCCCEEEEecCc
Q 036466 179 LLGGAEGSKILVTTRS 194 (727)
Q Consensus 179 l~~~~~~~~iliTsr~ 194 (727)
..-+.++++|++=-.
T Consensus 198 -tR~g~~sk~v~~GD~ 212 (262)
T PRK10536 198 -TRLGENVTVIVNGDI 212 (262)
T ss_pred -hhcCCCCEEEEeCCh
Confidence 344579999988643
No 154
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=6.8e-05 Score=78.56 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCceeecchhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTS------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
-.++-|.++.+++|++.+.-.. ..+-.++|-|.++|++|.|||.||++++.. ..- -|+.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~v-----Pf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGV-----PFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCC-----ceEeecch----
Confidence 4668899999999998864211 011235788999999999999999999983 322 24444432
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh------hhH-----HHHHHhhcC---C-CCCC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP------RAW-----GELKSLLLG---G-AEGS 186 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~~-----~~~~~~l~~---~-~~~~ 186 (727)
+++... .+.+.+.+.+.+.++....+++++||++|.... .+. .++...+.. . ..|.
T Consensus 258 ----eivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 122222 334455555666666667899999999976421 111 122222221 1 1133
Q ss_pred EEEE---ecCchHHHHHHhhcCC-CCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 187 KILV---TTRSNKVALIMATMRG-TTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 187 ~ili---Tsr~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
.|+| |+|...+...+...+. ++.|.+.--+..+-.++++....+...... -..++|++.+-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~----~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD----FDFKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC----cCHHHHHhcCCCc
Confidence 3443 6676666665554333 356888777777777888776644333221 1235666666553
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.09 E-value=3.2e-05 Score=89.80 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceE-EEEecCCCCHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKI-WICVSEDSGKRQI 123 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~-~~~~~~~~~~~~~ 123 (727)
..++||+.++.++...|... ....++++|++|+|||++|+.++........ ....+ +++.+. +
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~------l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA------L 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH------H
Confidence 45899999999999998662 2345678999999999999998874211100 12222 222211 1
Q ss_pred HHHHHHHhcCCCCCCCChHH-HHHHHHHHhC-CceEEEEEcCCCCCCh----hhHHHHHHhhcCC--CCCCEEEEecCch
Q 036466 124 MTKIINSVTGGNHGNLDPDR-LQKVLRDSLN-GKRYLLVMDDVWNEDP----RAWGELKSLLLGG--AEGSKILVTTRSN 195 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~-~~~~l~~~l~-~~~~LlvlDd~~~~~~----~~~~~~~~~l~~~--~~~~~iliTsr~~ 195 (727)
+. +..... +.+. +...+.+..+ +++.+|+||+++.... ..-......+.+. ....++|.+|...
T Consensus 241 ----~a---~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 ----IA---GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLD 312 (852)
T ss_pred ----hh---cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHH
Confidence 00 011111 1222 2222322222 3689999999974320 0001112222221 1234566555544
Q ss_pred HHHH----HHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 196 KVAL----IMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 196 ~~~~----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
+... .......+..+.+...+.++..++++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4322 11122345778999999999999987654
No 156
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.07 E-value=0.0004 Score=71.17 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=127.9
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHH-HHHhcchhhHhcCCceEEEEecCC---CCHHHHHHHHHH
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALA-KLLYNDQRVEEHFELKIWICVSED---SGKRQIMTKIIN 129 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~ll~ 129 (727)
|.+.+++|..||... ....|+|.||-|+||+.|+ .++..+ ...+++++|.+. .+...++..++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 678899999999874 3569999999999999999 666653 234788888543 345567777777
Q ss_pred HhcCC-----------------------CC-CCCChHH-HHHHHHH---HhC--------------------------Cc
Q 036466 130 SVTGG-----------------------NH-GNLDPDR-LQKVLRD---SLN--------------------------GK 155 (727)
Q Consensus 130 ~l~~~-----------------------~~-~~~~~~~-~~~~l~~---~l~--------------------------~~ 155 (727)
|++-- .. .....+. +...+.. .|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 76511 10 0112222 2222211 111 11
Q ss_pred eEEEEEcCCCCCC---hhhHHHHHH---hhcCCCCCCEEEEecCchHHHHHHhh---cCCCCceecCCCChhhHHHHHHH
Q 036466 156 RYLLVMDDVWNED---PRAWGELKS---LLLGGAEGSKILVTTRSNKVALIMAT---MRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 156 ~~LlvlDd~~~~~---~~~~~~~~~---~l~~~~~~~~iliTsr~~~~~~~~~~---~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
+=+|||||+..-. ..-|..+.. .+. ..+-.+||++|.+......+.. ...++.+.+...+.+.|..|...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 4489999984421 111222222 222 2345678888877655544332 23557899999999999999998
Q ss_pred hhccCCCC------------CC-----hhHHHHHHHHHHHcCCchHHHHHHHhhhcCCCCh
Q 036466 227 CAFKVGQE------------KH-----PNLVKIGEKIVEKCRGIPLAVRTVGSLLYGSTDE 270 (727)
Q Consensus 227 ~~~~~~~~------------~~-----~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~ 270 (727)
........ .. .......+..++..||--.-|..+++.++....+
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 77443111 00 1234556788999999999999999999775543
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.07 E-value=2.1e-05 Score=83.96 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH---hcCCceEEEEecC
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVE---EHFELKIWICVSE 116 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~~~~~~~ 116 (727)
.-.++.|.+++++++.+.+..+.. ..-..++-+.++|++|+|||++|+.+++..... .......|+.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 335678899999999988643210 011245679999999999999999999842111 0112334554432
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-hCCceEEEEEcCCCCCC-------hhh-----HHHHHHhhcCC-
Q 036466 117 DSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDS-LNGKRYLLVMDDVWNED-------PRA-----WGELKSLLLGG- 182 (727)
Q Consensus 117 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~-------~~~-----~~~~~~~l~~~- 182 (727)
. ++ +....+. .......+.+..++. ..+++++|+||+++..- ..+ ...+...+...
T Consensus 260 ~----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11 1110000 000111122222222 13478999999997531 011 12233333321
Q ss_pred -CCCCEEEEecCchHH-HHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 183 -AEGSKILVTTRSNKV-ALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 183 -~~~~~iliTsr~~~~-~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
..+..||.||..... ...+.. .+.+..++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 234455556544322 222211 1224569999999999999999876
No 158
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.3e-05 Score=80.40 Aligned_cols=136 Identities=26% Similarity=0.354 Sum_probs=67.1
Q ss_pred ccccCceeEecccccccccccCCCCCCCcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceee
Q 036466 499 YLVSLRMFVVTTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLI 578 (727)
Q Consensus 499 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 578 (727)
.+.++++|++++|.+..+| .-..+|++|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 3455666666666555544 122356677776666666555444 24677777777655444443 344444
Q ss_pred ccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCC--CcchhhhcCCCCcccEEEecCCCCccccCccCccc
Q 036466 579 FDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLL--ELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDL 656 (727)
Q Consensus 579 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l 656 (727)
+.++.. .....-.++|+.|.+.++.... .++.. -.++|++|++++|... .+|..+.
T Consensus 119 L~~n~~---------------~~L~~LPssLk~L~I~~~n~~~~~~lp~~----LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 119 IKGSAT---------------DSIKNVPNGLTSLSINSYNPENQARIDNL----ISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred eCCCCC---------------cccccCcchHhheeccccccccccccccc----cCCcccEEEecCCCcc-cCccccc--
Confidence 432110 0011122355666654332111 11110 1256777777777643 2332222
Q ss_pred ccccccccccc
Q 036466 657 EALENLVIGIC 667 (727)
Q Consensus 657 ~~L~~L~l~~~ 667 (727)
.+|+.|.++.|
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 46777777654
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.04 E-value=1.2e-05 Score=71.03 Aligned_cols=96 Identities=25% Similarity=0.244 Sum_probs=53.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC-ceE
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG-KRY 157 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 157 (727)
|.|+|++|+|||++|+.+++. ...+ .+.++..... ..........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELI---------------SSYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHH---------------TSSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccc---------------cccccccccccccccccccccccce
Confidence 679999999999999999984 2211 2344332210 001112222233333333333 389
Q ss_pred EEEEcCCCCCChhh-----------HHHHHHhhcCCC---CCCEEEEecCc
Q 036466 158 LLVMDDVWNEDPRA-----------WGELKSLLLGGA---EGSKILVTTRS 194 (727)
Q Consensus 158 LlvlDd~~~~~~~~-----------~~~~~~~l~~~~---~~~~iliTsr~ 194 (727)
+|+|||++...... ...+...+.... ++..+|.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999997754433 344555554432 34567777765
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00032 Score=70.82 Aligned_cols=177 Identities=13% Similarity=0.138 Sum_probs=103.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh----------------cCCceEEEEecCCCC
Q 036466 56 EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE----------------HFELKIWICVSEDSG 119 (727)
Q Consensus 56 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----------------~f~~~~~~~~~~~~~ 119 (727)
...+.+...+... .-+..+.++|+.|+||+++|..++....-.. ..+-+.|+.......
T Consensus 11 ~~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 3445566666542 4466899999999999999999887421111 011111221000000
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
- .........+++.+ +.+.+ .++.=++|||+++.+....-+.+...+-...+++.+|++|..
T Consensus 86 ~------------~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 86 G------------DKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred c------------ccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 0 00000112222222 22222 134568999999999887888888888766667777777764
Q ss_pred hH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 036466 195 NK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVG 261 (727)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 261 (727)
.. +...+ ......+.+.+++.+++.+.+... +.+ ...+..++..++|.|.....++
T Consensus 153 ~~~lLpTI--rSRCq~i~~~~~~~~~~~~~L~~~----~~~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATI--RSRCQRLEFKLPPAHEALAWLLAQ----GVS-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHH--HhhheEeeCCCcCHHHHHHHHHHc----CCC-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 32 22211 122378899999999999999753 111 2335678999999998665543
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=4.9e-05 Score=83.48 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=45.0
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.-.|....+++|.++.++++..++...... ....++++|+|++|+||||+++.++..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455566678999999999999998765322 123468999999999999999999874
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=2.7e-05 Score=80.85 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=76.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
.++++.++.++.+...+.. .+.+.++|++|+|||++|++++........++.+.|+.+.+..+..++.....
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999998864 24688999999999999999998533344566777888887766655554321
Q ss_pred HHhcCCCCCC-CChHHHHHHHHHHhC--CceEEEEEcCCCCCChhh-HHHHHHhh
Q 036466 129 NSVTGGNHGN-LDPDRLQKVLRDSLN--GKRYLLVMDDVWNEDPRA-WGELKSLL 179 (727)
Q Consensus 129 ~~l~~~~~~~-~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~-~~~~~~~l 179 (727)
- ....- ....-..+.+.++.. .+++++|||+++..+... +..+...+
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1 10000 011112223333322 368999999998877544 44554444
No 163
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.99 E-value=1.7e-05 Score=80.32 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC--CHHHHHHHHHHHhcCCCCC
Q 036466 60 KIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS--GKRQIMTKIINSVTGGNHG 137 (727)
Q Consensus 60 ~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~ 137 (727)
++++.+.+.. .-...+|+|++|+|||||++++++..... +|+..+|+.+.+.. .+.++++.+...+.....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 3455555442 22368899999999999999999864433 89999999987776 6667777776433222222
Q ss_pred CCChH------HHHHHHHHH-hCCceEEEEEcCCCC
Q 036466 138 NLDPD------RLQKVLRDS-LNGKRYLLVMDDVWN 166 (727)
Q Consensus 138 ~~~~~------~~~~~l~~~-l~~~~~LlvlDd~~~ 166 (727)
..... ...+.-... -.++.++|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 21111 111111111 246899999999953
No 164
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.98 E-value=0.00013 Score=68.32 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=91.4
Q ss_pred CCceeecchhHHH---HHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEK---IIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
-.+.+|.++.... |.++|..+..-+.=.++.|..+|++|.|||.+|+++++ +.+..| +.+.. .++.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~-----l~vka----t~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL-----LLVKA----TELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce-----EEech----HHHH
Confidence 3567887765543 66778776433233578999999999999999999998 333322 22211 1111
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHH-HhCCceEEEEEcCCCCCC------------hhhHHHHHHhhcC--CCCCCEEE
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRD-SLNGKRYLLVMDDVWNED------------PRAWGELKSLLLG--GAEGSKIL 189 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~------------~~~~~~~~~~l~~--~~~~~~il 189 (727)
.+-+. +.....+.+.+ +-+..+|++++|++|... ....+.+...+.. ...|...|
T Consensus 189 GehVG----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 GEHVG----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHhh----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111 11112222222 223479999999996531 1122233333332 24566556
Q ss_pred EecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 190 VTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 190 iTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
-.|...+.....-.......|+..--+++|..+++..++..
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 55555544433222233356777777889999999887744
No 165
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.97 E-value=0.00023 Score=76.23 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=129.8
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh---hHh---cCCceEEEEecCCCC
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR---VEE---HFELKIWICVSEDSG 119 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~---~~~---~f~~~~~~~~~~~~~ 119 (727)
..|..+-+|+.+..+|.+++...-.. ...-+.+.|.|.+|+|||..+++|++..+ .++ .|++ +.++...-..
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~ 470 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLAS 470 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecC
Confidence 35667789999999999998765433 12345999999999999999999998533 222 2332 2444445557
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-----CceEEEEEcCCCCCChhhHHHHHHhh-c-CCCCCCEEEEec
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN-----GKRYLLVMDDVWNEDPRAWGELKSLL-L-GGAEGSKILVTT 192 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDd~~~~~~~~~~~~~~~l-~-~~~~~~~iliTs 192 (727)
..++...|..++.+... ......+.+..... .+++++++|++|..-.... ++.-++ . ...+++|++|..
T Consensus 471 ~~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-dVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-DVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-HHHHHHhcCCcCCCCceEEEE
Confidence 88889999988854432 23333344444432 3578999999965421111 233333 2 246788877654
Q ss_pred Cch--HHHH-----HHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 193 RSN--KVAL-----IMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 193 r~~--~~~~-----~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
=.. .+.. ....--+...+...+.+.++-.++...+..+...-.....+-++++++...|-.-.|+.+..++.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 211 1111 11111234778899999999888888776443221123344456666666666666666555444
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.96 E-value=0.00023 Score=78.93 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=102.2
Q ss_pred CCCceeecchhHHHHHHHH---hcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 47 RPSDIIGRYEDGEKIIELL---TQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l---~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
.-.+++|.++..+++.+.+ ..+.. -....++-+.++|++|+|||++|+.++.. ...+ |+.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccH----
Confidence 3456788887777666554 22211 01133567999999999999999999873 2211 232221
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHH----HHHhhcC--CCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGE----LKSLLLG--GAE 184 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~----~~~~l~~--~~~ 184 (727)
.++.. .. .......+...+.+.....+++|+||+++... ...... +...+.. ...
T Consensus 250 s~f~~----~~-----~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVE----MF-----VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHH----Hh-----hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11111 11 01112233344555556789999999996531 112222 2222221 234
Q ss_pred CCEEEEecCchHH-HHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHH
Q 036466 185 GSKILVTTRSNKV-ALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVR 258 (727)
Q Consensus 185 ~~~iliTsr~~~~-~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~ 258 (727)
+..||.||..... ...+. .......+.+...+.++..++++..+.... .........+++.+.| .+--+.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~----~~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK----LSPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc----cchhHHHHHHHhcCCCCCHHHHH
Confidence 5566666665433 22222 112346789999999999999988763311 1122345677777776 333333
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.96 E-value=9.5e-05 Score=85.57 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-----CCc-eEEEEecCCCCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-----FEL-KIWICVSEDSGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~-~~~~~~~~~~~~~ 121 (727)
-..++||+.++.++++.|... ....++++|++|+|||++|+.++.... .+. ... +++++.+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~l---- 245 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGAL---- 245 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhhh----
Confidence 356999999999999988662 234577999999999999999988421 111 122 223333211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCCChh----hHHHHHHhhcCC--CCCCEEEEecCc
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNEDPR----AWGELKSLLLGG--AEGSKILVTTRS 194 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~----~~~~~~~~l~~~--~~~~~iliTsr~ 194 (727)
. .+....+.-...+...+.+.. .+.+++|+||+++..... .-......+.+. ....++|-+|..
T Consensus 246 --~-------ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~ 316 (857)
T PRK10865 246 --V-------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 316 (857)
T ss_pred --h-------hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCC
Confidence 0 000111111111222222222 246899999999654210 001111222221 224566666665
Q ss_pred hHHHHH----HhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 195 NKVALI----MATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 195 ~~~~~~----~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.+.... ......+..+.+..-+.+++..+++...
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 553211 1222344677888889999999887644
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00024 Score=72.98 Aligned_cols=162 Identities=11% Similarity=0.136 Sum_probs=93.8
Q ss_pred eee-cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 51 IIG-RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 51 ~vG-r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
++| -+..++.|.+.+... .-++...++|+.|+|||++|+.++....-....... .++.-...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 456 677778888887652 456788999999999999999987741111100000 0000011111100
Q ss_pred Hhc------CCCCCCCChHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HH
Q 036466 130 SVT------GGNHGNLDPDRLQKVLRDS----LNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VA 198 (727)
Q Consensus 130 ~l~------~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~ 198 (727)
.-. ..+......+++.+.+... ..+.+=++|||+++.......+.+...+-...+++.+|++|.... +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 000 0000112233333332221 123445789999998888788888888877667777777776543 22
Q ss_pred HHHhhcCCCCceecCCCChhhHHHHHHH
Q 036466 199 LIMATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
... ......+++.+++.++..+.+..
T Consensus 155 ~TI--rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTI--LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHH--HhhceeeeCCCCCHHHHHHHHHH
Confidence 111 12337899999999999888875
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00015 Score=71.47 Aligned_cols=179 Identities=20% Similarity=0.185 Sum_probs=99.9
Q ss_pred ceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
+.-|-++++++|.+.+.-+.. -.=++++-|.+||+||.|||-||++|+++ .... |+.+.+ .+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvg----SE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVG----SE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEecc----HH
Confidence 356899999999998754421 11135788999999999999999999983 3333 444432 12
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-CceEEEEEcCCCCC-----------C---hhhHHHHHHhhcCC--CCC
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLN-GKRYLLVMDDVWNE-----------D---PRAWGELKSLLLGG--AEG 185 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~-----------~---~~~~~~~~~~l~~~--~~~ 185 (727)
+.+..+ ++. ..+...+.+..+ ..+++|++|++|.. + +-...++...+..+ ...
T Consensus 221 lVqKYi----GEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQKYI----GEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHh----ccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 222222 111 123333334333 47899999999652 1 12233444445444 336
Q ss_pred CEEEEecCchHHH-HHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 186 SKILVTTRSNKVA-LIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 186 ~~iliTsr~~~~~-~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
.|||..|-..+.. .++- .-+.++.|+++.-+.+.-.++|+-..-.......-+ .+.+++.+.|.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~ 356 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGF 356 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCC
Confidence 7888766544332 2222 222346788875555555666665443322222222 34556666554
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.87 E-value=9.6e-05 Score=66.04 Aligned_cols=89 Identities=21% Similarity=0.143 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC-c
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG-K 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~-~ 155 (727)
+.+.|+|++|+||||++++++.. .......+++++............. .....................+.... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999984 2222234556655443222222211 11111111222222222333333333 3
Q ss_pred eEEEEEcCCCCCCh
Q 036466 156 RYLLVMDDVWNEDP 169 (727)
Q Consensus 156 ~~LlvlDd~~~~~~ 169 (727)
..++++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 49999999977653
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.87 E-value=0.00032 Score=80.99 Aligned_cols=137 Identities=21% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCceeecchhHHHHHHHHhcCC---CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTS---DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
....+|-+..++.+.+++.... .....+..++.++|++|+|||.+|+.++.. .-+.....+-++.+... .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~-----~ 637 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQ-----E 637 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhh-----h
Confidence 3578899999999999885431 111234457899999999999999988873 22212222333332221 1
Q ss_pred HHHHHHhcCCCCC--CCChHHHHHHHHHHhCC-ceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEE
Q 036466 125 TKIINSVTGGNHG--NLDPDRLQKVLRDSLNG-KRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILV 190 (727)
Q Consensus 125 ~~ll~~l~~~~~~--~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~ili 190 (727)
..-...+.+..+. +.... ..+.+.++. ...+|+||+++..++..++.+...+..+. ..+.||+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~---g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG---GVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hhhhccccCCCCCccccccc---chHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 1122233222111 11111 122333333 44799999999888877777777665432 3566777
Q ss_pred ecCc
Q 036466 191 TTRS 194 (727)
Q Consensus 191 Tsr~ 194 (727)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7754
No 172
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00097 Score=67.51 Aligned_cols=178 Identities=10% Similarity=0.040 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC----
Q 036466 58 GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG---- 133 (727)
Q Consensus 58 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~---- 133 (727)
-+.|.+.+... .-++...++|+.|+||+++|+.++....=...... ..++.-...+.+...-.+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEE
Confidence 34566666542 34678999999999999999999873111110000 001111111111111100
Q ss_pred ---CCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHHhhcC
Q 036466 134 ---GNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMATMR 205 (727)
Q Consensus 134 ---~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~~~~~ 205 (727)
.+......+++.+...... .++.=++|+|+++.+.....+.+...+-...+++.+|++|...+ +.... ..
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI--~S 156 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI--YS 156 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH--Hh
Confidence 0011223444333222211 23455788999999998888899988887777777777776542 22111 11
Q ss_pred CCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 206 GTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 206 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
....+.+.+++++++.+.+..... . ....+...+..++|.|...
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~----~----~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS----A----EISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc----c----ChHHHHHHHHHcCCCHHHH
Confidence 237899999999999999987531 1 1123566788899999633
No 173
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.86 E-value=8.4e-05 Score=68.33 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=85.0
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI 123 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 123 (727)
.|..-.++||-++.++.|.-.-.+ ...+-+.|.||||+||||-+..+++...-...-+.++=.+.+.
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd------- 88 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD------- 88 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc-------
Confidence 344456799999999998876655 4566799999999999999988887321111112222222222
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHh-------CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCc--
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSL-------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRS-- 194 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-------~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~-- 194 (727)
..+ .+.+...+..+. .++.=++|+|++|.+.......++..+--.+..+|..+...-
T Consensus 89 ------------eRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 89 ------------ERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred ------------ccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchh
Confidence 122 222222222211 245568999999998876666666665433334443332211
Q ss_pred ---hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhc
Q 036466 195 ---NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAF 229 (727)
Q Consensus 195 ---~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 229 (727)
+.+...| ....-..|++.+...-+...+.
T Consensus 155 KIiEPIQSRC------AiLRysklsd~qiL~Rl~~v~k 186 (333)
T KOG0991|consen 155 KIIEPIQSRC------AILRYSKLSDQQILKRLLEVAK 186 (333)
T ss_pred hhhhhHHhhh------HhhhhcccCHHHHHHHHHHHHH
Confidence 1111112 2334455666666555555443
No 174
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=4.5e-06 Score=89.26 Aligned_cols=105 Identities=31% Similarity=0.376 Sum_probs=53.9
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCce
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRM 505 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 505 (727)
+..+++|..|++.+|.+..+...+..+++|++|++++|. ++.+.. +..++.|+.|++++|.+.. + ..+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence 445566666666666665554435556666666666655 333322 4445556666665543322 1 12333555556
Q ss_pred eEeccccccccccc-CCCCCCCcEEecccc
Q 036466 506 FVVTTKQKSLLESG-IGCLSSLRFLMISNC 534 (727)
Q Consensus 506 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 534 (727)
++++.|.+..+... ...+.+++.+.+.+|
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666555544332 344555555555554
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.83 E-value=0.0003 Score=64.05 Aligned_cols=122 Identities=18% Similarity=0.143 Sum_probs=73.7
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh------------------cCCceEEEEe
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE------------------HFELKIWICV 114 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~~~~~~~ 114 (727)
|-++..+.|.+.+... .-+..+.++|+.|+||+++|..+++...-.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 5567778888888662 3456789999999999999999987421111 1222333322
Q ss_pred cCC---CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 115 SED---SGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 115 ~~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
... ..+ +-.+++...+.... ..+..=++|||+++.+.....+.++..+-....++.+|++
T Consensus 76 ~~~~~~i~i-~~ir~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKI-DQIREIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSH-HHHHHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhH-HHHHHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 211 111 11223333321110 0134568999999999988999999988877778888888
Q ss_pred cCchH
Q 036466 192 TRSNK 196 (727)
Q Consensus 192 sr~~~ 196 (727)
|++..
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 87653
No 176
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=0.0001 Score=75.79 Aligned_cols=138 Identities=22% Similarity=0.376 Sum_probs=87.7
Q ss_pred hhcCCCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCc
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLR 504 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 504 (727)
-+..|++++.|++++|.+..+|. + ..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 36667999999999999888872 2 2469999999988777777654 35899999998876666664 466
Q ss_pred eeEecccccccccccCCCC-CCCcEEeccccCCc--hhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeeccc
Q 036466 505 MFVVTTKQKSLLESGIGCL-SSLRFLMISNCGNL--EYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDE 581 (727)
Q Consensus 505 ~L~l~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 581 (727)
.|++..+.... +..+ ++|+.|.+.+++.. ..++.. -.++|+.|.+++|... .+|..+ +.+|+.|.++.
T Consensus 116 ~L~L~~n~~~~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDS----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCcc----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEEecc
Confidence 66676554332 1222 35666666443211 111111 1256888888887754 233322 24677777765
Q ss_pred c
Q 036466 582 C 582 (727)
Q Consensus 582 ~ 582 (727)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 177
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0011 Score=67.86 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=105.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc----
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT---- 132 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~---- 132 (727)
..++|.+.+... .-++...++|+.|+||+++|.+++....=...-+. ..++.-...+.+...-.
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEE
Confidence 445566666542 45678999999999999999998873110000000 00011111111111100
Q ss_pred ---CCCC-CCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHHhh
Q 036466 133 ---GGNH-GNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMAT 203 (727)
Q Consensus 133 ---~~~~-~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~~~ 203 (727)
+... .....+++.+...... .++.=++|||+++.+....-+.+...+-...+++.+|++|...+ +.....
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr- 156 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR- 156 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-
Confidence 0000 1233444433332221 23556899999999998888899988877767777777776543 322211
Q ss_pred cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 204 MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 204 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
...+.+.+.+++.+++.+.+.... +. ..+.+..++..++|.|....
T Consensus 157 -SRCq~~~~~~~~~~~~~~~L~~~~---~~-----~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 -SRCRLHYLAPPPEQYALTWLSREV---TM-----SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -hccccccCCCCCHHHHHHHHHHcc---CC-----CHHHHHHHHHHcCCCHHHHH
Confidence 123778999999999999887532 11 12346788999999996443
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.81 E-value=0.00022 Score=78.06 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=101.4
Q ss_pred CCCCCceeecchhHHHHHHHHhc---CC---CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQ---TS---DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~---~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
...-.+++|-++..+++.+.+.. +. ......++-+.++|++|+|||++|+.++.. ...+ |+.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH--
Confidence 34445688988777666655431 10 001234567999999999999999999873 2212 222221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHH----HHHhhcC--C
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGE----LKSLLLG--G 182 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~----~~~~l~~--~ 182 (727)
.++. ... .......+...+.......+.+|+||+++... ...... +...+.. .
T Consensus 122 --~~~~----~~~-----~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDFV----EMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHHH----HHH-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111 111 11122233344444445678999999996531 011112 2222211 2
Q ss_pred CCCCEEEEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHH
Q 036466 183 AEGSKILVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRT 259 (727)
Q Consensus 183 ~~~~~iliTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 259 (727)
..+..||.||.... +...+.. ...+..+.++..+.++..++++.......... ......+++.+.| .+--+..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHH
Confidence 23455666665432 2222221 12346789999999999999987663322111 1224577777776 3444443
Q ss_pred H
Q 036466 260 V 260 (727)
Q Consensus 260 ~ 260 (727)
+
T Consensus 267 l 267 (495)
T TIGR01241 267 L 267 (495)
T ss_pred H
Confidence 3
No 179
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=7.4e-05 Score=76.33 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCChH------HHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED--SGKRQIMTKIINSVTGGNHGNLDPD------RLQKVL 148 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~------~~~~~l 148 (727)
..++|+|++|+|||||++.+++... +.+|+..+|+.+.+. .++.++++.+...+.....+..... .+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 4799999999999999999998532 236888889988755 6888899988655432222221111 111222
Q ss_pred HHH-hCCceEEEEEcCCCCC
Q 036466 149 RDS-LNGKRYLLVMDDVWNE 167 (727)
Q Consensus 149 ~~~-l~~~~~LlvlDd~~~~ 167 (727)
... -.+++++|++|+++..
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 222 2468999999999543
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0022 Score=66.15 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=85.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC--ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE--LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL 152 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l 152 (727)
....+.|||+.|.|||.|++++.+. ...... .++|+ +.+.....++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4668999999999999999999984 444433 44554 345566666666522 1123444443
Q ss_pred CCceEEEEEcCCCCC--C---hhhHHHHHHhhcCCCCCCEEEEecCchHHHH------HHhhcCCCCceecCCCChhhHH
Q 036466 153 NGKRYLLVMDDVWNE--D---PRAWGELKSLLLGGAEGSKILVTTRSNKVAL------IMATMRGTTGYNLQELPYKDCL 221 (727)
Q Consensus 153 ~~~~~LlvlDd~~~~--~---~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~------~~~~~~~~~~~~l~~l~~~~~~ 221 (727)
.-=++++||++-. + +.++..+...+.. .|-.||+|++.....- ........-.+++.+.+++...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 2338889999652 2 3344444444443 3447999996532111 1111222378999999999999
Q ss_pred HHHHHhhccCCC
Q 036466 222 SLFMKCAFKVGQ 233 (727)
Q Consensus 222 ~l~~~~~~~~~~ 233 (727)
.++++.+...+.
T Consensus 251 aiL~kka~~~~~ 262 (408)
T COG0593 251 AILRKKAEDRGI 262 (408)
T ss_pred HHHHHHHHhcCC
Confidence 999987644333
No 181
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.78 E-value=0.00033 Score=70.28 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=81.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL- 152 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l- 152 (727)
..++.++|||++|.|||.+|+.++.. .... ++.++. .++ ...+...+...+.+.++.+-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e--lg~~-----~i~vsa------------~eL-~sk~vGEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK--MGIE-----PIVMSA------------GEL-ESENAGEPGKLIRQRYREAAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH--cCCC-----eEEEEH------------HHh-hcCcCCcHHHHHHHHHHHHHH
Confidence 56889999999999999999999983 2222 233321 111 11112222222222232221
Q ss_pred ----CCceEEEEEcCCCCCC------hhhH------HHHHHhhc--------------CCCCCCEEEEecCchHHH-HHH
Q 036466 153 ----NGKRYLLVMDDVWNED------PRAW------GELKSLLL--------------GGAEGSKILVTTRSNKVA-LIM 201 (727)
Q Consensus 153 ----~~~~~LlvlDd~~~~~------~~~~------~~~~~~l~--------------~~~~~~~iliTsr~~~~~-~~~ 201 (727)
++++++|+||++|..- +... ..+...+. ...++..||+||.+.... ..+
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 3579999999996521 1111 11221111 124456778888665432 222
Q ss_pred hhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 202 ATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 202 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
...+.... .+..-+.++-.++++......+.+ .....+|++..-|-|+
T Consensus 286 lRpGRfDk-~i~lPd~e~R~eIL~~~~r~~~l~-----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEK-FYWAPTREDRIGVVHGIFRDDGVS-----REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCc-eeCCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHcCCCCCc
Confidence 22222222 223346677777777655333221 2445677777777765
No 182
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.78 E-value=0.00039 Score=80.95 Aligned_cols=139 Identities=21% Similarity=0.323 Sum_probs=81.9
Q ss_pred CCceeecchhHHHHHHHHhcCCCC---CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDG---ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
...++|.+..++.+.+.+.....+ ...+..++.+.|++|+|||++|+.++.. .-..-...+.++++......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~--- 638 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKH--- 638 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccc---
Confidence 356899999999999998764211 1123467889999999999999999973 22222334455555432211
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHHHHHHhhcCC----C-------CCCEEEEec
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGK-RYLLVMDDVWNEDPRAWGELKSLLLGG----A-------EGSKILVTT 192 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~~~~~~~l~~~----~-------~~~~iliTs 192 (727)
....+.+.++.-...++ ...+...++.+ ..+|+||+++..+...+..+...+..+ . .++.||+||
T Consensus 639 --~~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 639 --SVARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --hHHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 12223222211111111 11223333223 359999999999888888888777442 1 234477777
Q ss_pred Cc
Q 036466 193 RS 194 (727)
Q Consensus 193 r~ 194 (727)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 65
No 183
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.78 E-value=0.0016 Score=67.51 Aligned_cols=145 Identities=15% Similarity=0.210 Sum_probs=83.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCC----HHHHHHHHH
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSG----KRQIMTKII 128 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~----~~~~~~~ll 128 (727)
|+...+.|.+.+.... ...+.+|+|.|.=|+|||++.+.+......... --.++|.+.....+ ...++.++.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELF 77 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHH
Confidence 4566777888887642 146789999999999999999998874333311 12233444433333 334444444
Q ss_pred HHhcCCC------------------------------C------------------------------------CCCChH
Q 036466 129 NSVTGGN------------------------------H------------------------------------GNLDPD 142 (727)
Q Consensus 129 ~~l~~~~------------------------------~------------------------------------~~~~~~ 142 (727)
.++.... . .....+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 4442100 0 000111
Q ss_pred HHHHHHHHHhC--CceEEEEEcCCCCCChhhHHHHHHhhcC--CCCCCEEEEecCchHHHHHH
Q 036466 143 RLQKVLRDSLN--GKRYLLVMDDVWNEDPRAWGELKSLLLG--GAEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 143 ~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~~~~~l~~--~~~~~~iliTsr~~~~~~~~ 201 (727)
+....+.+.+. ++++++|+||+|.........+...+.. ..++..+|+..-...+....
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAI 220 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHH
Confidence 13334444443 4789999999999766555555444432 23678777777666555444
No 184
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=0.0002 Score=71.08 Aligned_cols=104 Identities=25% Similarity=0.322 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..+.++|.+|+|||.||.++++. .......++|++ ..+++..+....... ..... ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSS--GKEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcc--ccccH----HHHHHHhcCCC
Confidence 46999999999999999999984 333333456664 344454444443211 11112 22333344334
Q ss_pred EEEEEcCCCCCChhhHHH--HHHhhcC-CCCCCEEEEecCch
Q 036466 157 YLLVMDDVWNEDPRAWGE--LKSLLLG-GAEGSKILVTTRSN 195 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~--~~~~l~~-~~~~~~iliTsr~~ 195 (727)
||||||+......+|.. +...+.. ...+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996543333432 3332222 13456689999754
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=6.3e-06 Score=78.43 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=47.0
Q ss_pred ceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccc-cCccCccccccccccccccccccccCc------cCCC
Q 036466 607 SHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMA-LPGSLKDLEALENLVIGICPKLSSLPE------GMHH 679 (727)
Q Consensus 607 ~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~------~l~~ 679 (727)
+++.++.+..|+.-+.-.. -....+|.+--|+|+.+++-+. -.+.+..++.|..|.++++++.+.+-. .++.
T Consensus 199 pnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred ccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 4555565655533221111 1124567777788887764331 123477889999999999988776532 2345
Q ss_pred CCccCeee
Q 036466 680 LTTLKTLA 687 (727)
Q Consensus 680 l~~L~~L~ 687 (727)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 66666664
No 186
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.75 E-value=0.00016 Score=79.20 Aligned_cols=175 Identities=17% Similarity=0.187 Sum_probs=91.3
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh--HhcCC-ceEEEEecCC---CCHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV--EEHFE-LKIWICVSED---SGKR 121 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~f~-~~~~~~~~~~---~~~~ 121 (727)
..+++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++.... ...|. ..-|+.+... .+..
T Consensus 64 f~~iiGqs~~i~~l~~al~~------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~ 137 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDER 137 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcc
Confidence 34699999999999987754 23446789999999999999988752111 12222 1123332211 1111
Q ss_pred HHHHHHHHHhcCCCCCCC-Ch--HHHHH-HHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC---------------
Q 036466 122 QIMTKIINSVTGGNHGNL-DP--DRLQK-VLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG--------------- 182 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~-~~--~~~~~-~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~--------------- 182 (727)
.+...++.....+..... .. ....+ ..-..-..+.-+|+||+++..+......+...+...
T Consensus 138 ~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~ 217 (531)
T TIGR02902 138 GIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPN 217 (531)
T ss_pred ccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcc
Confidence 121111111000000000 00 00000 000001224568999999998877777776655321
Q ss_pred -------------CCCCEEEEe-cCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 183 -------------AEGSKILVT-TRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 183 -------------~~~~~iliT-sr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
....++|.+ |++.. +..... .....+.+++++.+|..+++++.+..
T Consensus 218 ~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLr--sR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 218 IPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALR--SRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cccchhhhcccCcccceEEEEEecCCcccCChHHh--hhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 012356654 44322 111111 12367889999999999999887643
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0023 Score=64.59 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=103.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC---
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG--- 133 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~--- 133 (727)
..++|.+.+... .-+..+.++|+.|+||+++|+.++....=...-+. .| +.-..-+.+...-.+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~C----g~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----AC----GFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CC----CCCHHHHHHHcCCCCCEE
Confidence 344566665442 45678999999999999999998873110000000 00 000111111111000
Q ss_pred ----CC-CCCCChHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH-HHHHHh
Q 036466 134 ----GN-HGNLDPDRLQKVLRDSL-----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK-VALIMA 202 (727)
Q Consensus 134 ----~~-~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~-~~~~~~ 202 (727)
.. ......+++.+ +.+.+ .++.=++|||+++.+.....+.+...+-...+++.+|++|...+ +...+.
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 01123333332 22222 13345889999999988888899988877667777776666543 222211
Q ss_pred hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 203 TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 203 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
.....+.+.+++.+++.+.+.... .+ .+..+++.++|.|.....+
T Consensus 157 --SRCq~~~~~~~~~~~~~~~L~~~~----~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 --SRCQQWVVTPPSTAQAMQWLKGQG----IT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred --hcceeEeCCCCCHHHHHHHHHHcC----Cc-------hHHHHHHHcCCCHHHHHHH
Confidence 233789999999999999997631 11 1356788999999876554
No 188
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00046 Score=71.35 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=85.1
Q ss_pred Cceeecch---hHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 49 SDIIGRYE---DGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 49 ~~~vGr~~---~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
.+.-|-++ |++++.++|..+.. -.+.-++-|.++|++|.|||-||++++- +..-.| |...+..++
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG--EA~VPF----F~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG--EAGVPF----FYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc--ccCCCe----Eeccccchh---
Confidence 44556654 56666777766521 2235578899999999999999999997 333333 333322211
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-------h----hhHHHHHHhhcCCC--CCCEEE
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-------P----RAWGELKSLLLGGA--EGSKIL 189 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------~----~~~~~~~~~l~~~~--~~~~il 189 (727)
+++-. .....+.+.+..+-+..||+|+||++|... . ..++++..-+.... .|..||
T Consensus 375 ---Em~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 375 ---EMFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred ---hhhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 11111 111112222333334578999999996631 1 12333444444433 344344
Q ss_pred Eec-CchHHHHHHhhcCC-CCceecCCCChhhHHHHHHHhh
Q 036466 190 VTT-RSNKVALIMATMRG-TTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 190 iTs-r~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
-.| +.+.+...+..-+. +..+.++.-+..--.++|..+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 333 44455554443222 3456666666666666666554
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.00059 Score=63.47 Aligned_cols=113 Identities=22% Similarity=0.347 Sum_probs=69.5
Q ss_pred ccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 42 THSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 42 ~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
...+++-..++|.+...+.|.+-...-..| .+.--|.+||.-|+|||.|++++.+ .+...... -|.+... ..
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--DL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--HH
Confidence 333445567899999999988766554333 3455799999999999999999998 44444333 2333221 11
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCC-CCChhhHHHHHHhhcC
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVW-NEDPRAWGELKSLLLG 181 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~-~~~~~~~~~~~~~l~~ 181 (727)
.-+-.++.++ +. ..++++|+.||+- +.+...+..+...|-.
T Consensus 125 ~~Lp~l~~~L-----------------r~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 125 ATLPDLVELL-----------------RA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred hhHHHHHHHH-----------------hc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 1112222222 11 2578999999982 2333466667666654
No 190
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.72 E-value=8.7e-05 Score=78.76 Aligned_cols=192 Identities=16% Similarity=0.188 Sum_probs=116.7
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
-++++|-+..+..|...+... .-...-...|+-|+||||+||-++...--... .....++.-...+.+
T Consensus 15 F~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I 82 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEI 82 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhh
Confidence 356799999999999999773 34557888999999999999988863111110 001111111111222
Q ss_pred HHH----hcC-CCCCCCChHHHHHHHHHHh----CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 128 INS----VTG-GNHGNLDPDRLQKVLRDSL----NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 128 l~~----l~~-~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
-.. +.. +.......++..+.+.+.. .++.=+.|||+|+-.....|+.+...+-...+..+.|+.|.+..-.
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 111 000 0001112333323332222 2344588999999988889999988887766777777766654221
Q ss_pred HHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 199 LIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 199 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
.. ......+.+.++.++.++....+...+...+.. ...+++..|++..+|...
T Consensus 163 p~-TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~---~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PN-TILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN---IEEDALSLIARAAEGSLR 215 (515)
T ss_pred ch-hhhhccccccccCCCHHHHHHHHHHHHHhcCCc---cCHHHHHHHHHHcCCChh
Confidence 10 111233889999999999999998877554433 344667778888877554
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00014 Score=80.44 Aligned_cols=128 Identities=21% Similarity=0.334 Sum_probs=83.9
Q ss_pred CCCceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI 123 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 123 (727)
.....+|-+..+..+.+.+..... +...+..+....|++|||||.||++++.. .-+.=+..+-++.++ ..
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSE-----y~ 561 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSE-----YM 561 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHH-----HH
Confidence 346789999999999999865422 22345568888999999999999999873 111002233333322 34
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceE-EEEEcCCCCCChhhHHHHHHhhcCC
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRY-LLVMDDVWNEDPRAWGELKSLLLGG 182 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~~~~~~~~~~~~l~~~ 182 (727)
-+.-+..|.+.++.-..-++ .-.+-+..+.+|+ +|.||++...++..++-+...+-.+
T Consensus 562 EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 44555666555443222222 3456666677876 8889999998887788888877653
No 192
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=1.1e-05 Score=75.84 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=87.0
Q ss_pred hhcCCCcceEEEecCCCcc-----ccccccCCCCcCcEEeccCCcccc----ccC-------ccccCCCCCCEeecCCCC
Q 036466 425 CISKSKSLRVLVLTNSAIE-----VLPRKMGNLKQLRHLDLSGNRKIK----KLP-------NSICELQSLQTLNLGDCL 488 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~ 488 (727)
.+..+..+..++||+|.|. .+...+..-.+|+..+++.-. ++ .++ +.+-+||+|++.+|+.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445888899999999886 234445666778888876532 22 233 335578999999999988
Q ss_pred CCcccChh----hcccccCceeEecccccccccc--------------cCCCCCCCcEEeccccCC----chhhhhhccC
Q 036466 489 ELEELPKD----IRYLVSLRMFVVTTKQKSLLES--------------GIGCLSSLRFLMISNCGN----LEYLFEDIDQ 546 (727)
Q Consensus 489 ~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~--------------~~~~l~~L~~L~l~~~~~----~~~l~~~l~~ 546 (727)
+....|.. +++-..|.||.+++|.+..+.. ....-|.|+++.+..|.. ...+...+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 77766543 4566789999999888772221 123446677777766531 1122233444
Q ss_pred CCCcCeeecccCcC
Q 036466 547 LSVLRSLVVNACPR 560 (727)
Q Consensus 547 l~~L~~L~l~~~~~ 560 (727)
..+|+.+.+..|..
T Consensus 184 h~~lk~vki~qNgI 197 (388)
T COG5238 184 HENLKEVKIQQNGI 197 (388)
T ss_pred hcCceeEEeeecCc
Confidence 56788888877654
No 193
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.00025 Score=81.78 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=87.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|.++..+.+.+++...........+.+.++|++|+|||++|+.++.. ....| +-+.++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcC---
Confidence 457899999999888764321111123347999999999999999999983 33332 1222222222222110
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhh----HHHHHHhhcC--------C-------CCCCEEE
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRA----WGELKSLLLG--------G-------AEGSKIL 189 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~----~~~~~~~l~~--------~-------~~~~~il 189 (727)
............+.+.+.+.-...+ +|+||+++...... ...+...+.. . ..+..+|
T Consensus 392 ---~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 ---HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0111122223334444444333344 78899997764211 1222222211 0 1234444
Q ss_pred EecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 190 VTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 190 iTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.||....... -........+.+.+++.++-.+++.+..
T Consensus 468 ~TtN~~~~i~-~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIP-RPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCC-HHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554422111 1112234689999999999888887643
No 194
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=2.2e-05 Score=73.82 Aligned_cols=219 Identities=15% Similarity=0.054 Sum_probs=124.0
Q ss_pred hhhhhhcCCCcceEEEecCCCcc----ccc-------cccCCCCcCcEEeccCCccccccCc----cccCCCCCCEeecC
Q 036466 421 FVTSCISKSKSLRVLVLTNSAIE----VLP-------RKMGNLKQLRHLDLSGNRKIKKLPN----SICELQSLQTLNLG 485 (727)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~ 485 (727)
.+..++.+-++|++.+++..... .++ +.+.+|++|+..+++.|.+....|+ .++..++|..|.++
T Consensus 49 ~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~ 128 (388)
T COG5238 49 ELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN 128 (388)
T ss_pred HHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee
Confidence 34555666667777777654422 122 2355677777777777775544443 34556777777777
Q ss_pred CCCCCc----ccC---------hhhcccccCceeEecccccccccc-----cCCCCCCCcEEeccccCCchh-----hhh
Q 036466 486 DCLELE----ELP---------KDIRYLVSLRMFVVTTKQKSLLES-----GIGCLSSLRFLMISNCGNLEY-----LFE 542 (727)
Q Consensus 486 ~~~~~~----~~~---------~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~-----l~~ 542 (727)
+|.... .+. +...+-+.|+...+..|++...+. .+..-.+|+.+.+..|..-.. +..
T Consensus 129 NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~ 208 (388)
T COG5238 129 NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL 208 (388)
T ss_pred cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH
Confidence 654321 111 223455788888888888773222 233346888999888753221 123
Q ss_pred hccCCCCcCeeecccCcCCC----cCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCC
Q 036466 543 DIDQLSVLRSLVVNACPRLN----LLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLT 618 (727)
Q Consensus 543 ~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 618 (727)
.+..+.+|+.|++..|.++. .+..++...+.|++|.+.+|-- .+.
T Consensus 209 gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll-------------------------------s~~ 257 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL-------------------------------SNE 257 (388)
T ss_pred HHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh-------------------------------ccc
Confidence 34556889999998887643 2333444556677777766610 111
Q ss_pred CCCCcchhhhcCCCCcccEEEecCCCCcccc------CccC-ccccccccccccccccc
Q 036466 619 PLLELPQWLLQGSSKTLQTLAIGDCPNFMAL------PGSL-KDLEALENLVIGICPKL 670 (727)
Q Consensus 619 ~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~------~~~l-~~l~~L~~L~l~~~~~~ 670 (727)
+....-..+.....|+|..|....|...+.+ +... ..+|-|..|.+.+|.+.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1111111121234577777777766544321 2211 46778888888887654
No 195
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.70 E-value=0.0013 Score=65.35 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH--------HHh----cC-CCCCCCChHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII--------NSV----TG-GNHGNLDPDRL 144 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll--------~~l----~~-~~~~~~~~~~~ 144 (727)
.+.++|++|+|||++|+.++. .... ...++++.......+++.... .++ .. ........ .
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNW--V 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceee--c
Confidence 578999999999999999986 2221 234555555444444433221 110 00 00000000 0
Q ss_pred HHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC----------------CCCCEEEEecCch
Q 036466 145 QKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG----------------AEGSKILVTTRSN 195 (727)
Q Consensus 145 ~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~----------------~~~~~iliTsr~~ 195 (727)
...+....+ ++..+++|+++..+......+...+... .++.+||+|+...
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 011222222 3468899999988776666666666321 1356788888643
No 196
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.69 E-value=0.0003 Score=75.47 Aligned_cols=183 Identities=17% Similarity=0.115 Sum_probs=92.9
Q ss_pred CceeecchhHHHHHHHHhc----CCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQ----TSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~----~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
.++.|.+...+.+.+.... ....+-..++-+.++|++|+|||.+|+.++.. ....| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 4567776655555432211 00011134678999999999999999999873 22221 1222110
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC--------Chhh----HHHHHHhhcCCCCCCEEEEec
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE--------DPRA----WGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------~~~~----~~~~~~~l~~~~~~~~iliTs 192 (727)
+.. ...+.....+.+.+...-...+++|+||+++.. +... ...+...+.....+.-||.||
T Consensus 295 --l~~-----~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFG-----GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcc-----cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 110 011112222333333333357899999999642 1111 112233333333445566677
Q ss_pred CchH-HHHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 193 RSNK-VALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 193 r~~~-~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
.... +...+. ....+..+.++.-+.++-.++|+........... .......+++.+.|.
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~Gf 428 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKF 428 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCC
Confidence 5442 222221 1123467888888999999999877644321110 012245566666553
No 197
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.00025 Score=69.84 Aligned_cols=101 Identities=21% Similarity=0.190 Sum_probs=55.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..+.++|++|+|||.||..++.. .....-.++|+. ..+++..+.... ........ +.. + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~-----~~~~~~~~---l~~-l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVAR-----RELQLESA---IAK-L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHH-----hCCcHHHH---HHH-H-hcC
Confidence 46999999999999999999873 333333455654 344444443322 11222222 222 2 234
Q ss_pred EEEEEcCCCCCChhhH--HHHHHhhcCCCCCCEEEEecCch
Q 036466 157 YLLVMDDVWNEDPRAW--GELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~--~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
=||||||+.......+ ..+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5999999965432222 22333333221224589998764
No 198
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.67 E-value=5.1e-05 Score=67.30 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=66.8
Q ss_pred eecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh-HhcCCceEEEEecCCCCHHHHHHHHHHH
Q 036466 52 IGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV-EEHFELKIWICVSEDSGKRQIMTKIINS 130 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~ll~~ 130 (727)
||+...++++.+.+.... .....|.|+|++|+||+++|+.++..... ...|.. +++.... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------~----- 62 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------A----- 62 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------H-----
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------H-----
Confidence 578888888888887654 23446899999999999999877763221 111111 1121111 1
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC-CCCCCEEEEecCch
Q 036466 131 VTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSKILVTTRSN 195 (727)
Q Consensus 131 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~-~~~~~~iliTsr~~ 195 (727)
+.+.+ .+.-.++|+|++..+......+...+.. .....|+|.||+..
T Consensus 63 ---------------~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 63 ---------------ELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------HHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------HHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 11111 1445688999999887777777777764 36678999999754
No 199
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=9.4e-06 Score=86.84 Aligned_cols=126 Identities=26% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCcceEEEecCCCccccccccCCCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEe
Q 036466 429 SKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVV 508 (727)
Q Consensus 429 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 508 (727)
+..+..+++..|.+..+-..+..+.+|..|++..|. +..+...+..+++|++|++++|.+...- .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 344444445555554433335555666666666555 3333322455566666666654333221 3344445666666
Q ss_pred cccccccccccCCCCCCCcEEeccccCCchhhhhh-ccCCCCcCeeecccCc
Q 036466 509 TTKQKSLLESGIGCLSSLRFLMISNCGNLEYLFED-IDQLSVLRSLVVNACP 559 (727)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~~~ 559 (727)
.+|.+..+. .+..+++|+.+++.+|.... +... +..+.+|+.+.+.+|.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCc
Confidence 666665443 23335566666666543222 2111 3445555555555543
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00055 Score=66.37 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhh--HhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRV--EEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
.|++.++||||.|||+|.+++++...+ ...|.....+.+.. ..++..++.+ .+.-+..+.+.|.+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 589999999999999999999986333 34554444444432 2333333332 23445567777888777
Q ss_pred Cce--EEEEEcCCCC
Q 036466 154 GKR--YLLVMDDVWN 166 (727)
Q Consensus 154 ~~~--~LlvlDd~~~ 166 (727)
.+. +.+.+|+|..
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 655 4556888843
No 201
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1.6e-06 Score=92.06 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=26.8
Q ss_pred CcEEeccccCCchhhhhhccCCCCcCeeecccCcCCCcCccccccCcccceeecccc
Q 036466 526 LRFLMISNCGNLEYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLERLIFDEC 582 (727)
Q Consensus 526 L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 582 (727)
|.+.+.++ +.+..+..++.-++.|+.|+|++|.+... ..+..|++|++|++++|
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN 219 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc
Confidence 33334433 34444555555566666666666654321 13444555555555543
No 202
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=8.7e-07 Score=93.94 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=89.0
Q ss_pred cCeeecccCcCCCcCccccccCcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhc
Q 036466 550 LRSLVVNACPRLNLLPPAMKYLSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQ 629 (727)
Q Consensus 550 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 629 (727)
|...+.+.|.. ..+..++.-++.|+.|+|+.|+..+. +.+..|++|++|||+.|. +..+|..-.
T Consensus 166 L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~~v-------------~~Lr~l~~LkhLDlsyN~-L~~vp~l~~- 229 (1096)
T KOG1859|consen 166 LATASFSYNRL-VLMDESLQLLPALESLNLSHNKFTKV-------------DNLRRLPKLKHLDLSYNC-LRHVPQLSM- 229 (1096)
T ss_pred HhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhhhh-------------HHHHhcccccccccccch-hccccccch-
Confidence 44455554433 45556677788999999999866543 345678899999999984 344443221
Q ss_pred CCCCcccEEEecCCCCccccCccCccccccccccccccccccc--cCccCCCCCccCeeeccCCcchhh
Q 036466 630 GSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKLSS--LPEGMHHLTTLKTLAIEECPALCE 696 (727)
Q Consensus 630 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~l~~c~~l~~ 696 (727)
..| .|+.|.|.+|. .+.+-. +.++.+|+.|++++|-+.+. + ..+..+..|+.|.+.|||.-+.
T Consensus 230 ~gc-~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 230 VGC-KLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhh-hheeeeecccH-HHhhhh-HHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccccC
Confidence 234 49999999875 444543 78899999999999976532 2 2245678999999999998755
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=0.0002 Score=67.32 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=64.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhCC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHG--NLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~l~~~l~~ 154 (727)
.+++++|++|.||||++..++.+ .......++++. +..+.......++..++..... .....++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999999884 333333344442 1112222233345555321111 1234445555554 233
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 155 KRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 155 ~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
+.-+||+|+++..+..+...+...+.+ .|..|++|-+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEecCc
Confidence 456899999976654444445444433 578899998874
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.001 Score=76.38 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
....+|-+..++.+.+.+..... ....+..++.++|++|+|||++|+.++.. . +...+.++.+.....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~---- 523 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEK---- 523 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhc----
Confidence 45678999999999888864311 11123457899999999999999999873 2 223445555443221
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCce-EEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR-YLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
.....+.+........+ ....+.+.++.++ .+++||+++..+...++.+...+..
T Consensus 524 -~~~~~lig~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 524 -HTVSRLIGAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -ccHHHHhcCCCCCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11222222211111111 1123334444333 6999999999888777777776654
No 205
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.0014 Score=68.98 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=97.2
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT 132 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~ 132 (727)
.|...+.++.+.+.. ... +++|.|+-++||||+++.+... .... .+|+..-.......-+.+.++..
T Consensus 21 ~~~~~~~~l~~~~~~------~~~-i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~- 87 (398)
T COG1373 21 ERRKLLPRLIKKLDL------RPF-IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAY- 87 (398)
T ss_pred hHHhhhHHHHhhccc------CCc-EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHH-
Confidence 344555666665543 122 9999999999999999666552 1111 45554322211111112222221
Q ss_pred CCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHH---hhcCCCCc
Q 036466 133 GGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIM---ATMRGTTG 209 (727)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~---~~~~~~~~ 209 (727)
...-..++..++||.|+... .|......+.+.++. +|++|+.+....... ...+....
T Consensus 88 ----------------~~~~~~~~~yifLDEIq~v~--~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 88 ----------------IELKEREKSYIFLDEIQNVP--DWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred ----------------HHhhccCCceEEEecccCch--hHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 11111267899999997665 899999999887666 788888765443221 12334577
Q ss_pred eecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 210 YNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 210 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
+.+.||+-.|-..+.-..+ . ...... +-+-.-.+||.|.++..
T Consensus 149 ~~l~PlSF~Efl~~~~~~~-----~-~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 149 LELYPLSFREFLKLKGEEI-----E-PSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred EEECCCCHHHHHhhccccc-----c-hhHHHH-HHHHHHHhCCCcHHHhC
Confidence 8999999998766532000 0 001111 33334457889988864
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.59 E-value=0.00082 Score=77.36 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=98.3
Q ss_pred CCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|.+...+.|.+.+.-+.. ..-..++-+.++|++|+|||++|+.++.. .... |+.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~-----fi~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGAN-----FIAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEeh----
Confidence 34577888888878776642110 01124567899999999999999999983 2222 233321
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC--------h----hhHHHHHHhhcC--CCCCC
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED--------P----RAWGELKSLLLG--GAEGS 186 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--------~----~~~~~~~~~l~~--~~~~~ 186 (727)
.+ ++.. +.+.....+...+...-...+++|+||+++... . .....+...+.. ...+.
T Consensus 521 ~~----l~~~-----~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PE----ILSK-----WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----Hhhc-----ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1111 122222333344444445678999999996421 0 112223333332 22344
Q ss_pred EEEEecCchHHH-HHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 187 KILVTTRSNKVA-LIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 187 ~iliTsr~~~~~-~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
-||.||...... ..... .+....+.++..+.++..++|+........... .....+++.+.|.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~----~~l~~la~~t~g~ 656 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED----VDLEELAEMTEGY 656 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc----CCHHHHHHHcCCC
Confidence 566566544322 22221 233467889899999999998765432221111 1245667777664
No 207
>PRK12377 putative replication protein; Provisional
Probab=97.59 E-value=0.00018 Score=69.88 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=56.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.++|++|+|||.||.++++. +....-.+.|+++ .+++..+-..... ..... ..+ +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~------~~l~~~l~~~~~~----~~~~~---~~l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV------PDVMSRLHESYDN----GQSGE---KFL-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH------HHHHHHHHHHHhc----cchHH---HHH-HHh-cC
Confidence 357999999999999999999984 3333334566644 3344444333211 11111 122 222 34
Q ss_pred eEEEEEcCCCCCChhhHH--HHHHhhcCC-CCCCEEEEecCc
Q 036466 156 RYLLVMDDVWNEDPRAWG--ELKSLLLGG-AEGSKILVTTRS 194 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~~--~~~~~l~~~-~~~~~iliTsr~ 194 (727)
.=||||||+.......|. .+...+... ...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 568999999554323333 233333322 223447888864
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.58 E-value=0.00047 Score=79.96 Aligned_cols=126 Identities=19% Similarity=0.288 Sum_probs=73.7
Q ss_pred CCceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
...++|.+..++.+...+..... ....+..++.++|++|+|||++|+.++.. .-......++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~----- 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME----- 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----
Confidence 35688999999999998865321 11122357899999999999999998863 222222344555543321
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCce-EEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR-YLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
......+.+.++.....++ ...+....+.++ -+|+||+++..+...+..+...+..
T Consensus 640 ~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 1122333322221111111 122333333333 6999999998887777777776643
No 209
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.57 E-value=0.00044 Score=69.80 Aligned_cols=122 Identities=17% Similarity=0.254 Sum_probs=69.9
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT 132 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~ 132 (727)
+|........+++.....+ ...+-+.|+|++|+|||.||.++++. ....--.+.|+.+ .+++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 4555555555666543211 23467999999999999999999984 3333233455544 344444444431
Q ss_pred CCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHH--HHHhhcC-C-CCCCEEEEecCc
Q 036466 133 GGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGE--LKSLLLG-G-AEGSKILVTTRS 194 (727)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~--~~~~l~~-~-~~~~~iliTsr~ 194 (727)
. .... +.+.. + .+.=||||||+.......|.. +...+.. . ..+-.+++||.-
T Consensus 205 ~-----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22222 2 234589999997766556653 4444422 2 245568888864
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0021 Score=68.74 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=101.3
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
...-.++-|-|+...+|.+.+.-+.. -.-.+++-|.+||+||.|||++|+++++ +..-.| +.+...
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp 502 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP 502 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH
Confidence 33445566677766667655432211 1124578899999999999999999998 333333 333221
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh-------hhHHHHHHhhcC----CCCCC
Q 036466 118 SGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP-------RAWGELKSLLLG----GAEGS 186 (727)
Q Consensus 118 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-------~~~~~~~~~l~~----~~~~~ 186 (727)
+++... .+.+...+.+.++++-.-.+++|+||++|.... ..-+.+.+.|.. .....
T Consensus 503 --------EL~sk~-----vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 --------ELFSKY-----VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred --------HHHHHh-----cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 111221 233344444455555445789999999965311 112233333332 11122
Q ss_pred EEEE---ecCchHHHHHHhhc-CCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 187 KILV---TTRSNKVALIMATM-RGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 187 ~ili---Tsr~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
.|+| |-|...+...+-.- +-+..+.++.-+.+...++|+.++.+....... ...+|++.+.|.
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~v----dl~~La~~T~g~ 636 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDV----DLEELAQATEGY 636 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccc----cHHHHHHHhccC
Confidence 2333 55555555544321 234667887777778888998887544333222 235566655553
No 211
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.55 E-value=0.00021 Score=65.24 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=71.6
Q ss_pred eeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHH
Q 036466 51 IIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINS 130 (727)
Q Consensus 51 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~ 130 (727)
++|....+.++.+.+..... ....|.|+|.+|+||+.+|+.+.+.... .-..-+-++|+.. +.+.+..+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcchhhhhhhcc
Confidence 47888888888888876542 2356889999999999999999874211 1112234555543 222222222222
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCch
Q 036466 131 VTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRSN 195 (727)
Q Consensus 131 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~~ 195 (727)
-.+........ ..-.+.+. ..=.|+||+++......-..+..++... ...+|||.||...
T Consensus 74 ~~~~~~~~~~~--~~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccc--cCCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11110111110 00122222 3447889999988876666777776532 1257888888754
No 212
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.3e-05 Score=88.37 Aligned_cols=244 Identities=19% Similarity=0.151 Sum_probs=114.1
Q ss_pred hcCCCcceEEEecCCCc-cc--cccccCCCCcCcEEeccCC-cccccc----CccccCCCCCCEeecCCCCCCccc--Ch
Q 036466 426 ISKSKSLRVLVLTNSAI-EV--LPRKMGNLKQLRHLDLSGN-RKIKKL----PNSICELQSLQTLNLGDCLELEEL--PK 495 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~-~~--l~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~--~~ 495 (727)
...++.|+.+.+..+.- .. +-.....+++|+.|++++| ...... ......+++|+.|+++++..++.. ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 33467777777666542 22 2234455677777777662 211111 122334566777777766533321 11
Q ss_pred hhcccccCceeEecccc-cc--cccccCCCCCCCcEEeccccCCchh--hhhhccCCCCcCeeecccCcCCCcCcccccc
Q 036466 496 DIRYLVSLRMFVVTTKQ-KS--LLESGIGCLSSLRFLMISNCGNLEY--LFEDIDQLSVLRSLVVNACPRLNLLPPAMKY 570 (727)
Q Consensus 496 ~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 570 (727)
....+++|+.|.+.++. ++ .+......+++|++|++++|..+.. +......+++|+.|.+..+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence 22235566666655444 23 2223334555566666666654421 222233455555544333211
Q ss_pred CcccceeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCcchhhhcCCCCcccEEEecCCCCccccC
Q 036466 571 LSSLERLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLELPQWLLQGSSKTLQTLAIGDCPNFMALP 650 (727)
Q Consensus 571 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~ 650 (727)
+..++.+.+.++..... ..........+++++.+.+..+. ..+.........||+|. ..+..+
T Consensus 334 c~~l~~~~l~~~~~~~~--------d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~------- 396 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTS--------DDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELR------- 396 (482)
T ss_pred CccHHHHHHHHhhccCc--------hhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHH-------
Confidence 22233333332211110 01112334455666666666665 33332111123444442 222111
Q ss_pred ccCccccccccccccccccccccC-ccCCC-CCccCeeeccCCcchhhhc
Q 036466 651 GSLKDLEALENLVIGICPKLSSLP-EGMHH-LTTLKTLAIEECPALCERC 698 (727)
Q Consensus 651 ~~l~~l~~L~~L~l~~~~~~~~l~-~~l~~-l~~L~~L~l~~c~~l~~~~ 698 (727)
......++.|+++.|.....-. ..... +.+++.+++.+|+.+....
T Consensus 397 --~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 397 --LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred --hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 1122227888888877654421 11111 6778888888888876543
No 213
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.1e-05 Score=89.02 Aligned_cols=216 Identities=25% Similarity=0.306 Sum_probs=115.1
Q ss_pred CCCcCcEEeccCCccccc--cCccccCCCCCCEeecCCC-CCCccc----ChhhcccccCceeEecccc-cc--cccccC
Q 036466 451 NLKQLRHLDLSGNRKIKK--LPNSICELQSLQTLNLGDC-LELEEL----PKDIRYLVSLRMFVVTTKQ-KS--LLESGI 520 (727)
Q Consensus 451 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~-~~--~~~~~~ 520 (727)
.++.|+.|.+..|..... +-.....+++|+.|++++| ...... ......+.+|+.|+++.+. ++ .+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 368888888888765543 3344567888999998873 222211 2234455677777777665 33 111112
Q ss_pred CCCCCCcEEeccccCCc--hhhhhhccCCCCcCeeecccCcCCCc--CccccccCcccceeecccccccccccccccccc
Q 036466 521 GCLSSLRFLMISNCGNL--EYLFEDIDQLSVLRSLVVNACPRLNL--LPPAMKYLSSLERLIFDECESLSLSLNMEMKEE 596 (727)
Q Consensus 521 ~~l~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 596 (727)
..+++|++|.+..|..+ ..+......+++|++|++++|...+. +.....++++|+.|.+..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~-------------- 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL-------------- 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc--------------
Confidence 23667777776666533 22334445566777777777665421 2222333444544433321
Q ss_pred CCCCCCCCCCceeeEEEecCCCCCC-CcchhhhcCCCCcccEEEecCCCCccccCccCccccccccccccccccc-cccC
Q 036466 597 GSHHDRKNVGSHLRTLYVARLTPLL-ELPQWLLQGSSKTLQTLAIGDCPNFMALPGSLKDLEALENLVIGICPKL-SSLP 674 (727)
Q Consensus 597 ~~~~~~~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~l~ 674 (727)
..|..++.+.+.++.... +.........+++++.+.+..|. ..... ..+.+.+|+.+ ..+.
T Consensus 332 -------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~---------~~~~l~gc~~l~~~l~ 394 (482)
T KOG1947|consen 332 -------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG---------LELSLRGCPNLTESLE 394 (482)
T ss_pred -------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc---------hHHHhcCCcccchHHH
Confidence 114455555555554433 12222223567888888887775 22221 03444445444 2222
Q ss_pred ccCCCCCccCeeeccCCcchhhh
Q 036466 675 EGMHHLTTLKTLAIEECPALCER 697 (727)
Q Consensus 675 ~~l~~l~~L~~L~l~~c~~l~~~ 697 (727)
........++.|+++.|...+..
T Consensus 395 ~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 395 LRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHhccCCccceEecccCcccccc
Confidence 12223334888999888876553
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.53 E-value=6.1e-05 Score=67.07 Aligned_cols=90 Identities=26% Similarity=0.240 Sum_probs=50.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEE
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYL 158 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 158 (727)
|.|+|++|+|||+||+.+++. .. .....+.+....+..++....--+-........... ..+ .++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~---~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLV---RAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCC---TTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeeccccccccccccc---ccc-----cceeE
Confidence 789999999999999999973 31 123355666666666555433222111111000110 001 17899
Q ss_pred EEEcCCCCCChhhHHHHHHhhcC
Q 036466 159 LVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 159 lvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
++||+++..+...+..+...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999987776556666665543
No 215
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.51 E-value=0.00036 Score=66.77 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC 113 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~ 113 (727)
.++|.|.+|+||||++..+.. .....|..+++++
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 577899999999999999997 5677887766553
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.50 E-value=0.00068 Score=78.03 Aligned_cols=183 Identities=20% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK 120 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~ 120 (727)
-.++.|.++.++.+.+++..+.. ..-..++.+.++|++|+|||++|+.++.. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH-----
Confidence 34588999999999888743210 00123567999999999999999999873 22221 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhhcCC-CCCCEE
Q 036466 121 RQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLGG-AEGSKI 188 (727)
Q Consensus 121 ~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l~~~-~~~~~i 188 (727)
++. .. ........+...+.......+.+|+||+++... ......+...+... ..+..+
T Consensus 247 -~i~----~~-----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SK-----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----cc-----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 110 00 011112223333444444567899999986531 01122233333322 223333
Q ss_pred EE-ecCch-HHHHHHhh-cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 189 LV-TTRSN-KVALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 189 li-Tsr~~-~~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
+| +|... .+...... ......+.+...+.++..++++......... .......+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~----~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA----EDVDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc----cccCHHHHHHhCCCCC
Confidence 43 44432 22222211 1123567888888888888888654221111 1123467777787754
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0039 Score=63.66 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCC
Q 036466 155 KRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQ 233 (727)
Q Consensus 155 ~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 233 (727)
+.=++|||+++.+.....+.+...+-...+++.+|++|... .+...+. .....+.+.+++.++..+++.... .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~--SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL--SRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH--hcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 44588899999999889999999887766777666655553 3332221 123789999999999999997641 1
Q ss_pred CCChhHHHHHHHHHHHcCCchHHHHHH
Q 036466 234 EKHPNLVKIGEKIVEKCRGIPLAVRTV 260 (727)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 260 (727)
. . ...++..++|.|.....+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577789999755444
No 218
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00092 Score=69.35 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHh-------------------cCCceE
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEE-------------------HFELKI 110 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~ 110 (727)
.++|-+..+.++..+..... ..++.+.++|++|+||||+|.+++....-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777888888888887532 3345799999999999999999998422111 112233
Q ss_pred EEEecCCCC---HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCE
Q 036466 111 WICVSEDSG---KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSK 187 (727)
Q Consensus 111 ~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~ 187 (727)
.+..+.... ..+..+++.+....... .++.-++|+|+++.......+.+...+-.....+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333332222 22333333333311110 24567999999998887777777777777677888
Q ss_pred EEEecCc
Q 036466 188 ILVTTRS 194 (727)
Q Consensus 188 iliTsr~ 194 (727)
+|+++..
T Consensus 142 ~il~~n~ 148 (325)
T COG0470 142 FILITND 148 (325)
T ss_pred EEEEcCC
Confidence 8888874
No 219
>PRK06526 transposase; Provisional
Probab=97.49 E-value=0.00034 Score=68.59 Aligned_cols=101 Identities=21% Similarity=0.149 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
.+.+.++|++|+|||+||..+... .....-.+.|+ +..++..++.... ... .....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~--a~~~g~~v~f~------t~~~l~~~l~~~~-----~~~---~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR--ACQAGHRVLFA------TAAQWVARLAAAH-----HAG---RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH--HHHCCCchhhh------hHHHHHHHHHHHH-----hcC---cHHHHHHHh--cc
Confidence 346999999999999999999874 22222223343 2334444443221 111 111223322 23
Q ss_pred eEEEEEcCCCCCChh-hH-HHHHHhhcCC-CCCCEEEEecCch
Q 036466 156 RYLLVMDDVWNEDPR-AW-GELKSLLLGG-AEGSKILVTTRSN 195 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~-~~-~~~~~~l~~~-~~~~~iliTsr~~ 195 (727)
.-+|||||++..... .. ..+...+... ..+ .+|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 458999999764321 22 2233333221 223 488888764
No 220
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.47 E-value=0.0008 Score=68.98 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=73.4
Q ss_pred eeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHH
Q 036466 51 IIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINS 130 (727)
Q Consensus 51 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~ 130 (727)
++|+...+.++.+.+.... .....|.|+|.+|+||+++|+.+...... .-...+-++|.... .+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~--~~~l~~~--- 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS--ENLLDSE--- 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC--hHHHHHH---
Confidence 4788888888888877654 22346999999999999999988763211 11222345565432 2222222
Q ss_pred hcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCc
Q 036466 131 VTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRS 194 (727)
Q Consensus 131 l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~ 194 (727)
+++....... .......+. ....-.|+||+++.........+...+.... ...+||.+|..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 2111100000 000000111 1234568999999888767777777764421 24588888754
No 221
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0022 Score=61.53 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=93.7
Q ss_pred CceeecchhHHHHHHHHhcCC------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTS------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
.+..|-+...+.|.+++.-+- ++...+-+-+.++|++|.|||-||++|+.. .... |.+++. .+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSS----SD 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSS----SD 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeeh----HH
Confidence 456677777777777653221 133445789999999999999999999973 3222 333432 12
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-CceEEEEEcCCCCC-------ChhhHHHH----HHhhcC---CCCCCE
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLN-GKRYLLVMDDVWNE-------DPRAWGEL----KSLLLG---GAEGSK 187 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~-------~~~~~~~~----~~~l~~---~~~~~~ 187 (727)
+...++ ++ .+.+...+.+..+ .++-+|++|+++.. +...-..+ .-.+.. ...|.-
T Consensus 202 LvSKWm----GE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 LVSKWM----GE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHHHHh----cc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 222221 11 1223333333333 58899999999652 11111111 111222 234666
Q ss_pred EEEecCchHHHHHHhhcCCCCceecCCCChhhHH-HHHHHhhccCCCCCChhHHHHHHHHHHHcCCc
Q 036466 188 ILVTTRSNKVALIMATMRGTTGYNLQELPYKDCL-SLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGI 253 (727)
Q Consensus 188 iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 253 (727)
|+-.|..+-+....-..+....|.+ +|.+..|. .+|.-.+ +..++.-.++..+++.+.+.|.
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl---G~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL---GDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc---CCCccccchhhHHHHHhhcCCC
Confidence 6666666543332222222355555 34444444 4454433 2233333444556777777654
No 222
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=2.9e-05 Score=86.71 Aligned_cols=156 Identities=19% Similarity=0.072 Sum_probs=88.9
Q ss_pred cccCceeEecccccc--cccccC-CCCCCCcEEeccccCCc-hhhhhhccCCCCcCeeecccCcCCCcCccccccCcccc
Q 036466 500 LVSLRMFVVTTKQKS--LLESGI-GCLSSLRFLMISNCGNL-EYLFEDIDQLSVLRSLVVNACPRLNLLPPAMKYLSSLE 575 (727)
Q Consensus 500 l~~L~~L~l~~~~~~--~~~~~~-~~l~~L~~L~l~~~~~~-~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 575 (727)
-.+|++|++++...- ..+..+ ..+|+|++|.+.+-... ........++|+|..||+++++.. .+ ..+.++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHH
Confidence 357777777764433 222222 34688888887764322 233445567788888888886653 22 5677788888
Q ss_pred eeeccccccccccccccccccCCCCCCCCCCceeeEEEecCCCCCCCc--ch-hh-hcCCCCcccEEEecCCCCccccCc
Q 036466 576 RLIFDECESLSLSLNMEMKEEGSHHDRKNVGSHLRTLYVARLTPLLEL--PQ-WL-LQGSSKTLQTLAIGDCPNFMALPG 651 (727)
Q Consensus 576 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l--~~-~~-~~~~~~~L~~L~L~~~~~~~~~~~ 651 (727)
.|.+.+-..-+. .....+..+++|+.||+|.......- .. .+ ....+|+|+.||.|+......+.+
T Consensus 199 ~L~mrnLe~e~~----------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESY----------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHhccCCCCCch----------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 887776322110 11223456778888888776544322 11 11 123478888888887655444322
Q ss_pred c-Ccccccccccccccc
Q 036466 652 S-LKDLEALENLVIGIC 667 (727)
Q Consensus 652 ~-l~~l~~L~~L~l~~~ 667 (727)
. +..-|+|+.+.+-+|
T Consensus 269 ~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 269 ELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHHhCccHhhhhhhhh
Confidence 2 234456666655443
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.00094 Score=64.78 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=63.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH 136 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 136 (727)
.+..+.++..... .....+.++|.+|+|||+|+.+++.. .......++|++ ..++...+-.... .
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~-~-- 148 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFS-N-- 148 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHh-h--
Confidence 4445555554321 22347899999999999999999984 333334556664 3444444333321 0
Q ss_pred CCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHH--HHHhhcCC-CCCCEEEEecCc
Q 036466 137 GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGE--LKSLLLGG-AEGSKILVTTRS 194 (727)
Q Consensus 137 ~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~--~~~~l~~~-~~~~~iliTsr~ 194 (727)
...... .+.+.+. +.=+|||||+......+|.. +...+... ...-.+||||..
T Consensus 149 ~~~~~~----~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 SETSEE----QLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ccccHH----HHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 111222 2223333 34488889997765445553 22222221 223457888864
No 224
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.42 E-value=0.001 Score=69.98 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=84.6
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH-H
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI-I 128 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l-l 128 (727)
.++||++.++.+...+... ..|.|.|++|+|||++|+.+.........|.. ..+.- ....+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~f-ttp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRF-STPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccCccee---eeeee-cCcHHhcCcHHH
Confidence 5899999999999888653 25999999999999999999973222223322 11110 0122222211 1
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCC---ceEEEEEcCCCCCChhhHHHHHHhhcCC---------CCCCEEEEecCchH
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNG---KRYLLVMDDVWNEDPRAWGELKSLLLGG---------AEGSKILVTTRSNK 196 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~LlvlDd~~~~~~~~~~~~~~~l~~~---------~~~~~iliTsr~~~ 196 (727)
...... ..+.+...+ ..-++++|+++.........+...+... .-..++++++.++
T Consensus 89 ~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~- 156 (498)
T PRK13531 89 QALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE- 156 (498)
T ss_pred hhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-
Confidence 111000 001111111 1228999999988877777777777432 1123455544432
Q ss_pred HHH-----HHhhcCCCCceecCCCChhh-HHHHHHHh
Q 036466 197 VAL-----IMATMRGTTGYNLQELPYKD-CLSLFMKC 227 (727)
Q Consensus 197 ~~~-----~~~~~~~~~~~~l~~l~~~~-~~~l~~~~ 227 (727)
+.. ..-..+-...+.++++++++ -.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 00011112568899997544 47777653
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.42 E-value=0.00028 Score=71.37 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=43.5
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++|.++.++++.+++.....+.+...++++++|++|+||||||+.++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999998766544455689999999999999999999984
No 226
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0018 Score=68.30 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=89.6
Q ss_pred eeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH
Q 036466 51 IIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI 123 (727)
Q Consensus 51 ~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 123 (727)
+-|-++...+|.-++..+.. -+-..+.-|.+||++|+|||-||+++++ +..-+ |+.+-+.
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~N-----FisVKGP------ 579 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGAN-----FISVKGP------ 579 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCc-----eEeecCH------
Confidence 33455555556555543311 0012355699999999999999999999 33333 5555432
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----hhh------HHHHHHhhcC--CCCCCEEEE
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----PRA------WGELKSLLLG--GAEGSKILV 190 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----~~~------~~~~~~~l~~--~~~~~~ili 190 (727)
+++..- .+.+...+.+.++++-...+|+|+||++|... ... .+.+..-+.. ...|.-||-
T Consensus 580 --ELlNkY-----VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~via 652 (802)
T KOG0733|consen 580 --ELLNKY-----VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIA 652 (802)
T ss_pred --HHHHHH-----hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEe
Confidence 222222 23344455566666667789999999997631 111 1222222222 233555554
Q ss_pred ec-CchHHHHHHhh-cCCCCceecCCCChhhHHHHHHHhhc
Q 036466 191 TT-RSNKVALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAF 229 (727)
Q Consensus 191 Ts-r~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~ 229 (727)
.| |..-+...+-. -+-++...+..-..+|-.++++....
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 44 44333333322 22235667777778888888887764
No 227
>PHA02244 ATPase-like protein
Probab=97.41 E-value=0.0011 Score=67.07 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
...|+|...........+.... .....|.|+|++|+|||++|+++++. .... |+.+... .. .
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l----~~~~PVLL~GppGtGKTtLA~aLA~~--lg~p-----fv~In~l--~d-----~ 156 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIV----NANIPVFLKGGAGSGKNHIAEQIAEA--LDLD-----FYFMNAI--MD-----E 156 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecC--hH-----H
Confidence 3456776555543333332221 11235888999999999999999873 2222 3333321 11 0
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC-----------CCCCCEEEEecCc
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG-----------GAEGSKILVTTRS 194 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~-----------~~~~~~iliTsr~ 194 (727)
+...+...... ... ...+.+.. .+.-+++||+++.........+...+.. ..++.++|+|+..
T Consensus 157 ~~L~G~i~~~g-~~~--dgpLl~A~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 157 FELKGFIDANG-KFH--ETPFYEAF-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred Hhhcccccccc-ccc--chHHHHHh-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 01111000000 010 01222222 2456999999988776555555555531 1356788888865
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.001 Score=77.31 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=80.3
Q ss_pred CCceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
...++|-+..++.+.+.+..... ....+..++.++|++|+|||+||+.++.. .-+.-...+.++.+.......
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc--
Confidence 46788999999999988863211 11223456789999999999999999873 211112233444443322111
Q ss_pred HHHHHHhcCCCC--CCCChHHHHHHHHHHhCCce-EEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEE
Q 036466 125 TKIINSVTGGNH--GNLDPDRLQKVLRDSLNGKR-YLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILV 190 (727)
Q Consensus 125 ~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~ili 190 (727)
+..+.+.++ .+.+. ...+.+.++.++ .+++||+++..+...++.+...+-.+ -..+.+|+
T Consensus 584 ---~~~l~g~~~gyvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 584 ---VSKLIGSPPGYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHHhcCCCCcccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 111222211 11111 123444444455 58999999998887777777776542 13455667
Q ss_pred ecCch
Q 036466 191 TTRSN 195 (727)
Q Consensus 191 Tsr~~ 195 (727)
||...
T Consensus 658 Tsn~g 662 (821)
T CHL00095 658 TSNLG 662 (821)
T ss_pred eCCcc
Confidence 77643
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.41 E-value=0.00027 Score=65.30 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=51.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
...+.++|++|+|||.||..+++. ...+--.+.|++. .+++. .+.... ........ +.+ +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~----~l~~~~-~~~~~~~~---~~~-l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLD----ELKQSR-SDGSYEEL---LKR-LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHH----HHHCCH-CCTTHCHH---HHH-HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceec----cccccc-cccchhhh---cCc-cc-c
Confidence 457999999999999999999884 3222234556643 33333 332221 12222222 222 22 2
Q ss_pred eEEEEEcCCCCCChhhHHH--HHHhhcCCCCCCEEEEecCch
Q 036466 156 RYLLVMDDVWNEDPRAWGE--LKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~~~--~~~~l~~~~~~~~iliTsr~~ 195 (727)
.=||||||+......+|.. +...+.....+..+||||.-.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3477899997654333332 222222111123588888654
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.39 E-value=0.0029 Score=62.07 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=99.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCC-ceEEEEecCCCCH-HHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFE-LKIWICVSEDSGK-RQIMTK 126 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~~~~~~~~~~~-~~~~~~ 126 (727)
..++|-.++...+..++.+...- ++...|.|.|+.|.|||+|+.....+ ...|. ..+-+...+.... .-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 45899999999999988665321 23346889999999999999877774 23332 3333344333222 224556
Q ss_pred HHHHhc----CCCCCCCChHHHHHHHHHHhCC------ceEEEEEcCCCCCChhhHHH-HHHhh---c-CCCCCCEEEEe
Q 036466 127 IINSVT----GGNHGNLDPDRLQKVLRDSLNG------KRYLLVMDDVWNEDPRAWGE-LKSLL---L-GGAEGSKILVT 191 (727)
Q Consensus 127 ll~~l~----~~~~~~~~~~~~~~~l~~~l~~------~~~LlvlDd~~~~~~~~~~~-~~~~l---~-~~~~~~~iliT 191 (727)
+.+|+. .......+..+....+-..|+. .++++|+|++|--....-.- +-.++ . ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 666553 1111222333444555555542 36899998886532211111 12222 1 13566778899
Q ss_pred cCchHHHHHHh----hcCCCCceecCCCChhhHHHHHHHhh
Q 036466 192 TRSNKVALIMA----TMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 192 sr~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
||-........ ....-.++-++.+.-+|.+++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99754432211 11122345566677788888887654
No 231
>PRK04132 replication factor C small subunit; Provisional
Probab=97.38 E-value=0.0042 Score=70.57 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=101.0
Q ss_pred EEc--CCCCcHHHHHHHHhcchhhHhcCC-ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceE
Q 036466 81 IVG--IGGLGKTALAKLLYNDQRVEEHFE-LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRY 157 (727)
Q Consensus 81 i~G--~~GiGKTtLa~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 157 (727)
+.| |.++||||+|+.+++... ...++ .++-++++...++. ..++++..+....+. -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCE
Confidence 347 889999999999988421 12222 23455555433333 444444443211110 012346
Q ss_pred EEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCCh
Q 036466 158 LLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHP 237 (727)
Q Consensus 158 LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~ 237 (727)
++|+|++|.....+.+.+...+-.....+++|+++.+..-.. .........+.+++++.++....+...+...+..
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi-~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--- 708 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII-EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--- 708 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCc-hHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---
Confidence 999999999988788888888776556777777766542211 1111234789999999999998888766443322
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHh
Q 036466 238 NLVKIGEKIVEKCRGIPLAVRTVGS 262 (727)
Q Consensus 238 ~~~~~~~~i~~~~~g~Plal~~~a~ 262 (727)
...+.+..|++.++|.+.....+..
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2246788999999998855443333
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00069 Score=75.15 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=87.5
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC-----CceEEEEecCCCCHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF-----ELKIWICVSEDSGKRQI 123 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~ 123 (727)
...+||++|+.++++.|.... .. --+++|.+|+|||++|.-++.+. +.+.- +..++.-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KN--NPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~sL---------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KN--NPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYSL---------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CC--CCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEEe----------
Confidence 458999999999999997632 22 23568999999999998888741 12211 1122211
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCC----Ch----hhHHHHHHhhcCCCCCCEEEEecCc
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNE----DP----RAWGELKSLLLGGAEGSKILVTTRS 194 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~----~~----~~~~~~~~~l~~~~~~~~iliTsr~ 194 (727)
++..-.-+.... .+.++....+.+.+ +..+++++||.++.. .. .+-..+.......+.-..|-.||-+
T Consensus 233 --D~g~LvAGakyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 233 --DLGSLVAGAKYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred --cHHHHhcccccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH
Confidence 011111122222 23333333333333 345899999999653 10 1111222222112222234456654
Q ss_pred hHH---HHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 195 NKV---ALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 195 ~~~---~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
+.- ..-....+.++.+.+..-+.+++..+++-..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 322 1111233456899999999999999997643
No 233
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0045 Score=58.13 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=38.5
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+++-|-++++++|.+++.-+.+ -.-.+++-|.+||++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 3466889999999988754432 1123567899999999999999999887
No 234
>PRK09183 transposase/IS protein; Provisional
Probab=97.37 E-value=0.00037 Score=68.85 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..+.|+|++|+|||+||..+... .......+.|++ ..++...+-..... .. ....+.+.+ ...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 46889999999999999999763 222222344553 23333333222210 11 112232222 345
Q ss_pred EEEEEcCCCCCChhhH--HHHHHhhcCC-CCCCEEEEecCch
Q 036466 157 YLLVMDDVWNEDPRAW--GELKSLLLGG-AEGSKILVTTRSN 195 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~--~~~~~~l~~~-~~~~~iliTsr~~ 195 (727)
-++|+||++......+ ..+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 6999999975432222 2233333221 1233 88888654
No 235
>PRK06921 hypothetical protein; Provisional
Probab=97.35 E-value=0.0012 Score=65.38 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEe
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICV 114 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~ 114 (727)
...+.++|++|+|||.|+.++++. +... ...++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457999999999999999999984 3333 344567664
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.35 E-value=0.0014 Score=72.66 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
.....++|....+.++.+.+.... .....|.|+|++|+|||++|+.+..... ..-...+.++|.... ...+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~--~~~~~ 264 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALS--ETLLE 264 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCC--HHHHH
Confidence 345679999999999999887654 2234689999999999999999987421 111223455665432 22222
Q ss_pred HHHHHhcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEec
Q 036466 126 KIINSVTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTT 192 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTs 192 (727)
. .+.+....... .......+. ....-.|+||+++.........+...+.... ...++|.||
T Consensus 265 ~---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 265 S---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred H---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 2 22221110000 000000011 1234568899999888777777777775421 135888877
Q ss_pred Cch
Q 036466 193 RSN 195 (727)
Q Consensus 193 r~~ 195 (727)
...
T Consensus 339 ~~~ 341 (534)
T TIGR01817 339 NRD 341 (534)
T ss_pred CCC
Confidence 543
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.001 Score=63.26 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=109.7
Q ss_pred eeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhh----HhcCCceEEEEec-----------
Q 036466 51 IIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRV----EEHFELKIWICVS----------- 115 (727)
Q Consensus 51 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~~~~~~----------- 115 (727)
+.++++.-..+...... ...+-+.++|++|.||-|.+..+.+...- +-+-+..-|.+-+
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 66777777777776653 34567889999999999999888774211 0011122222211
Q ss_pred ----------CCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceE-EEEEcCCCCCChhhHHHHHHhhcCCCC
Q 036466 116 ----------EDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRY-LLVMDDVWNEDPRAWGELKSLLLGGAE 184 (727)
Q Consensus 116 ----------~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~~~~~~~~~~~~l~~~~~ 184 (727)
.+...+-+.++++.+.....+. ... ..+++ ++|+..++.....+...++..+-.-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-----------e~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ETQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-----------hhc-cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1122334566666665322111 111 12233 667777777666566666666655566
Q ss_pred CCEEEEecCch--HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHH
Q 036466 185 GSKILVTTRSN--KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAV 257 (727)
Q Consensus 185 ~~~iliTsr~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 257 (727)
.+|+|+...+. -+...- ...-.+.++..+++|....+.+...+.+-.- -.+.+.+|++.++|+-.-.
T Consensus 157 ~~RlIl~cns~SriIepIr---SRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIR---SRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRA 225 (351)
T ss_pred CceEEEEecCcccchhHHh---hheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHH
Confidence 78888744321 111111 1125689999999999999998876554432 2578899999999976433
No 238
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.33 E-value=0.00061 Score=63.70 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=61.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC--CC-------CHHH--
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE--DS-------GKRQ-- 122 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~--~~-------~~~~-- 122 (727)
+..+-....+++.. ..++.+.|++|+|||.||.+.+.+.-..+.|+.++++.-.- .. +..+
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 33444555555553 34899999999999999998887755668888887764211 00 0000
Q ss_pred --HHHHHHHHhcCCCCCCCChHHHHHHH------HHHhCCc---eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEe
Q 036466 123 --IMTKIINSVTGGNHGNLDPDRLQKVL------RDSLNGK---RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVT 191 (727)
Q Consensus 123 --~~~~ll~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliT 191 (727)
.+.-+...+..- ......+.+.+.= ..+++++ ..+||+|++++....++..+ +-+-+.+||+|++
T Consensus 77 ~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEe
Confidence 111111121110 0111111111000 0133443 56999999988776555444 4555679999998
Q ss_pred cCc
Q 036466 192 TRS 194 (727)
Q Consensus 192 sr~ 194 (727)
=-.
T Consensus 153 GD~ 155 (205)
T PF02562_consen 153 GDP 155 (205)
T ss_dssp E--
T ss_pred cCc
Confidence 643
No 239
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0015 Score=74.08 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCceeecchhHHHHHHHHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
...++|-++.++.|.+++..... ....+...+.++|++|+|||.+|+.++.. .. ...+.++++......
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~--- 528 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH--- 528 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc---
Confidence 34689999999999998864211 11133457899999999999999988873 22 223344544332211
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 125 TKIINSVTGGNHGNLDPDRLQKVLRDSLNGK-RYLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 125 ~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
.+..+.+.++..... .....+.+.++.+ ..+|+||+++..+...+..+...+..
T Consensus 529 --~~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 --TVSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred --cHHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 123333322111100 0111233333333 46999999999887777777776643
No 240
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.30 E-value=0.0015 Score=74.60 Aligned_cols=167 Identities=15% Similarity=0.168 Sum_probs=91.4
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
..+.+|.++..+++.+++.............+.++|++|+||||+++.++. .....| +-+.++...+..++....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch
Confidence 466899999999999888632111112335799999999999999999886 333332 123333332332221111
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhh----HHHHHHhhcCC---------------CCCCEE
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRA----WGELKSLLLGG---------------AEGSKI 188 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~----~~~~~~~l~~~---------------~~~~~i 188 (727)
+.. .+.....+.+.+.+.-. ..-+++||+++...... ...+...+... ..+..+
T Consensus 396 -~~~-----~g~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTY-----IGSMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hcc-----CCCCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 111 11122233334443222 33468899997754321 23344433321 134445
Q ss_pred EEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 189 LVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 189 liTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
|.|+....+...+ ......+.+.+++.++-.++..+..
T Consensus 469 i~TaN~~~i~~aL--l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPL--LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHH--hcceeeeecCCCCHHHHHHHHHHhh
Confidence 5555443322221 2234778999999999888887754
No 241
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0012 Score=71.19 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=92.9
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..+.+.+|-++.-+++.++|.-......-+-+.+.++|+||+|||.|++.++. ...+.|- -+.+++-.+..++-.
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRG 394 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRG 394 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhcc
Confidence 34567889999999999998533211123446999999999999999999998 4555542 233444333322210
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh----------------hhHHHHHHhhcCC---CCCC
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP----------------RAWGELKSLLLGG---AEGS 186 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------------~~~~~~~~~l~~~---~~~~ 186 (727)
+.....+.-+..+.+.+.+. +.+.=+++||++|.+.. ++-..|.+.+..- ....
T Consensus 395 ------HRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 ------HRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ------ccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 01111222233344444443 23455788999976421 1111222222211 1123
Q ss_pred EEEEecCchH-HHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 187 KILVTTRSNK-VALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 187 ~iliTsr~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.+|.|.-+-+ +.. ........+++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~--PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPA--PLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCCh--HHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2333333221 111 112334889999999999888877654
No 242
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.29 E-value=0.00027 Score=47.88 Aligned_cols=35 Identities=43% Similarity=0.586 Sum_probs=23.3
Q ss_pred CcceEEEecCCCccccccccCCCCcCcEEeccCCc
Q 036466 430 KSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGNR 464 (727)
Q Consensus 430 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 464 (727)
++|++|++++|.+..+|..+++|++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 45677777777777776666777777777777765
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0055 Score=65.98 Aligned_cols=192 Identities=15% Similarity=0.036 Sum_probs=101.4
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC--HHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG--KRQI 123 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~~ 123 (727)
+.+.+|+--...-+...+....+- -....|.|.|+.|+|||+||+++++... +..+-.+-+++|+.-.. .+.+
T Consensus 405 ~~e~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~i 479 (952)
T KOG0735|consen 405 PFEHDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKI 479 (952)
T ss_pred cCCCceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHH
Confidence 344566665555555554444431 2345799999999999999999998533 33344455777754321 1222
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC------hhhH----HHHHHhhcC-----CCCCCE-
Q 036466 124 MTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED------PRAW----GELKSLLLG-----GAEGSK- 187 (727)
Q Consensus 124 ~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~----~~~~~~l~~-----~~~~~~- 187 (727)
++. +..++.+.+...|-+|||||++... ..+| ..+...+.+ ...+.+
T Consensus 480 Qk~-----------------l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~i 542 (952)
T KOG0735|consen 480 QKF-----------------LNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKI 542 (952)
T ss_pred HHH-----------------HHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEE
Confidence 221 1233444556689999999995421 1111 112222211 123333
Q ss_pred -EEEecCchHHHHHHhh--cCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCC-chHHHHHHHh
Q 036466 188 -ILVTTRSNKVALIMAT--MRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRG-IPLAVRTVGS 262 (727)
Q Consensus 188 -iliTsr~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~ 262 (727)
+|.|..........-. .-...++.++.+...+-.++++........+. ..+...-+..+|+| .+.-+.++..
T Consensus 543 a~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 543 AVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred EEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHHHH
Confidence 4444443222111111 11124678999999998888887653322121 12223336667765 4555555543
No 244
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0031 Score=65.34 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
.....+++.|++|+|||+||.+++. ...|+++--++-..-.... .......+...+..+.+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhhc
Confidence 4578899999999999999999886 3455544332211100000 01112223344455555
Q ss_pred CceEEEEEcCCCCCC----------hhhHHHHHHhhcCCCC-CCE--EEEecCchHHHHHHhhc-CCCCceecCCCCh-h
Q 036466 154 GKRYLLVMDDVWNED----------PRAWGELKSLLLGGAE-GSK--ILVTTRSNKVALIMATM-RGTTGYNLQELPY-K 218 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~----------~~~~~~~~~~l~~~~~-~~~--iliTsr~~~~~~~~~~~-~~~~~~~l~~l~~-~ 218 (727)
+.--+||+||+...- ...+..+.-.+....| |-| |+-||....+...+... .....+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 666799999984421 0111222222322222 334 44566667776665532 2336788999887 6
Q ss_pred hHHHHHHH
Q 036466 219 DCLSLFMK 226 (727)
Q Consensus 219 ~~~~l~~~ 226 (727)
+..+.++.
T Consensus 677 ~~~~vl~~ 684 (744)
T KOG0741|consen 677 QLLEVLEE 684 (744)
T ss_pred HHHHHHHH
Confidence 77777765
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0043 Score=63.29 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=48.7
Q ss_pred eEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHh
Q 036466 156 RYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKC 227 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 227 (727)
+=++|+|+++..+....+.+...+-....++.+|++|.+....... .......+.+.+++.+++.+.+...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~t-i~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPT-IKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHH-HHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3355679999888877778888776554567677777765422211 1122378899999999999999763
No 246
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.24 E-value=0.00084 Score=68.93 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=77.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+...+.++.+.+..... ....|.|+|.+|+||+++|+.+.... ...-...+.++|.... ...+...++
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999999999988877642 23469999999999999999887521 1111223456666532 222222222
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
..-.+. ..+... .....+.. ...-.|+||+++.........+...+.... ...+||.||...
T Consensus 79 g~~~~~-~~g~~~-~~~g~l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGA-FTGAQK-RHPGRFER---ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccc-cCCccc-ccCCchhc---cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 111000 000000 00111211 233468899999888777777777764321 136888887643
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.22 E-value=0.002 Score=59.02 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
+++|+|++|+|||+++..++.. ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999999883 33334557788776543
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.19 E-value=0.0018 Score=62.64 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
.-+++.|+|.+|+||||++.+++.. ....-..++|++.....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 4579999999999999999999873 33334467788765443
No 249
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0077 Score=61.63 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
.++++++.|++|+||||++..++.. ....-..+.++++.... ...+-+......++.+-....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999999874 33332345566654432 12223334444443332223455666665555432
Q ss_pred C-ceEEEEEcCCCCCC--hhhHHHHHHhhcCCCCCCEEEE
Q 036466 154 G-KRYLLVMDDVWNED--PRAWGELKSLLLGGAEGSKILV 190 (727)
Q Consensus 154 ~-~~~LlvlDd~~~~~--~~~~~~~~~~l~~~~~~~~ili 190 (727)
. +.=++++|-..... ......+...+....|...++|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 2 23477889885543 3345555555544334333444
No 250
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0031 Score=64.24 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCc-eEEEEec-CCCCHHHHHHHHHHHhcCC
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFEL-KIWICVS-EDSGKRQIMTKIINSVTGG 134 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~~~~~~-~~~~~~~~~~~ll~~l~~~ 134 (727)
...++++.+..... -.-++|+|++|+|||||++++++.... .+-+. .+|+-+. ...++.++++.+...+...
T Consensus 119 ~~~RvID~l~PiGk-----GQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIGK-----GQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecCC-----CceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 44557777766432 235699999999999999999884222 22233 2455554 3446778888887777543
Q ss_pred CCCCCChH-----HHHHHHHHHh--CCceEEEEEcCCC
Q 036466 135 NHGNLDPD-----RLQKVLRDSL--NGKRYLLVMDDVW 165 (727)
Q Consensus 135 ~~~~~~~~-----~~~~~l~~~l--~~~~~LlvlDd~~ 165 (727)
..+..... .....+.+.+ .+++++||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 22222111 1111222222 3689999999993
No 251
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.18 E-value=0.0019 Score=62.88 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS 115 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~ 115 (727)
.-.++.|+|++|+|||+++.+++.. .......++|++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC
Confidence 4579999999999999999999874 33344667899886
No 252
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00075 Score=61.80 Aligned_cols=34 Identities=32% Similarity=0.653 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhH-hcCCceEE
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVE-EHFELKIW 111 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~~ 111 (727)
.|.|.|++|+||||+|++++...... -++|.++|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853332 33555555
No 253
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0096 Score=65.86 Aligned_cols=188 Identities=18% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCCCceeecchhHHHHHH---HHhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC
Q 036466 46 VRPSDIIGRYEDGEKIIE---LLTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG 119 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~---~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~ 119 (727)
+.-.++.|-++..++|.+ +|..+.. -...-++=+.++|++|+|||-||++++-. .. +-|+.+++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--Ag-----VPF~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AG-----VPFFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cC-----CceeeechH--
Confidence 344567887766655554 4443311 11245788999999999999999999973 22 335555442
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCCh---------------hhHHHHHHhhcCCCC
Q 036466 120 KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDP---------------RAWGELKSLLLGGAE 184 (727)
Q Consensus 120 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~---------------~~~~~~~~~l~~~~~ 184 (727)
+++..+.+. ...-+.+.+...-...|++|.+|+++.... ..++++.--+.....
T Consensus 379 ------EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ------EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ------HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 222222111 111111222222234789999999865211 112223222333322
Q ss_pred --CCEEEEecCchH-HHHHHh-hcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHH
Q 036466 185 --GSKILVTTRSNK-VALIMA-TMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLA 256 (727)
Q Consensus 185 --~~~iliTsr~~~-~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 256 (727)
+.-++-+|...+ +..... .-+.++.+.++.-+.....++|.-++...... ....++.+ ++..+-|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 233333444333 222222 22334778888888888889998776332221 22334444 88888887744
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0028 Score=64.55 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..+.++|++|+|||.||.++++. .......++|+++ .+++..+...-.. ...+.. ..+ +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~------~~l~~~l~~~~~~---~~~~~~---~~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA------DELIEILREIRFN---NDKELE---EVY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH------HHHHHHHHHHHhc---cchhHH---HHH-HHhc-cC
Confidence 57999999999999999999984 3333335667654 2333333222111 111111 112 2222 22
Q ss_pred EEEEEcCCCCCChhhHH--HHHHhhcCC-CCCCEEEEecCch
Q 036466 157 YLLVMDDVWNEDPRAWG--ELKSLLLGG-AEGSKILVTTRSN 195 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~--~~~~~l~~~-~~~~~iliTsr~~ 195 (727)
=||||||+.......|. .+...+... ..+..+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 37999999665332332 233333221 2345688888653
No 255
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0051 Score=67.63 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=89.1
Q ss_pred CceeecchhHHHHHHHHhcC---CCC----CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQT---SDG----ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~---~~~----~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
....|.+...+.+.+.+..+ .+. .-..++.+.++|++|.|||.||++++. ....+| +.+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH----
Confidence 34555565555555544322 110 113466899999999999999999998 333333 332211
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----h------hhHHHHHHhhcC--CCCCCEE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----P------RAWGELKSLLLG--GAEGSKI 188 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----~------~~~~~~~~~l~~--~~~~~~i 188 (727)
+ ++. .+.......+.+.+..+.+..+++|+||+++... . .....+...+.. ...+..|
T Consensus 311 ~----l~s-----k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 E----LLS-----KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred H----Hhc-----cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 1 111 1122333344455555556789999999996521 0 122333333432 2334444
Q ss_pred EEecCchH-HHHHHhh-cCCCCceecCCCChhhHHHHHHHhhc
Q 036466 189 LVTTRSNK-VALIMAT-MRGTTGYNLQELPYKDCLSLFMKCAF 229 (727)
Q Consensus 189 liTsr~~~-~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~ 229 (727)
|-+|-.+. +...... .+....+.++.-+.++..+.|.....
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 54554332 2222111 12346789999999999999998764
No 256
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.0017 Score=62.40 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
..-+++.|+|++|+|||+++.+++.. .......++|++... .....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~r 55 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPER 55 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHH
Confidence 34579999999999999999999874 334446788998865 44433
No 257
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0059 Score=65.72 Aligned_cols=183 Identities=18% Similarity=0.168 Sum_probs=103.2
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
.++-|..+..+.|.+.+.-+.. ..-....-|.++|++|.|||-||.+++.... .-|+++-+.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 4566777777777776654321 0001234699999999999999998887421 225665442
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHHHHHHhhcC--CCCCCEE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED-----------PRAWGELKSLLLG--GAEGSKI 188 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~~~~~l~~--~~~~~~i 188 (727)
+++..- .+.+.+.+...+.++-..+||+++||+++... ....+++...+.. ...|.-|
T Consensus 736 ----ElL~Ky-----IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ----ELLSKY-----IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred ----HHHHHH-----hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 223322 33445556666667777799999999997632 1223344444432 2345544
Q ss_pred E-EecCchHHHHHHhhcCC-CCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchH
Q 036466 189 L-VTTRSNKVALIMATMRG-TTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPL 255 (727)
Q Consensus 189 l-iTsr~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 255 (727)
+ .|||..-+...+-..+. ++.+.-+.-+..+..++++...-... .......+.++..++|.--
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~----~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL----KDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC----CccccchHHHhhhcCCCch
Confidence 4 46776544443332222 24455555566777788776542111 1112234667777776543
No 258
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.12 E-value=0.0018 Score=73.96 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=79.0
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH-H
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK-I 127 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-l 127 (727)
..++|+...+..+.+.+.... .....|.|+|++|+|||++|+.+.... ...-...+.++|.... ...+.. +
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC--hhHhhhhh
Confidence 469999999999988877653 223469999999999999999998732 1122234566666532 122222 2
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCC-----------CCCCEEEEecCch
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGG-----------AEGSKILVTTRSN 195 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~-----------~~~~~iliTsr~~ 195 (727)
+....+. ..+.. ......+.. ..+-.|+||+++.........+...+... ..+.|||.||...
T Consensus 448 fg~~~~~-~~g~~-~~~~g~le~---a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGA-FTGAS-AQRIGRFEL---ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCccccc-ccccc-cchhhHHHh---cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 2111100 01100 011112211 23457999999988876677777776432 1346888888654
No 259
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.11 E-value=0.0029 Score=61.91 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC-------------------
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG------------------- 134 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~------------------- 134 (727)
+...++.|+|++|+|||+++.+++.. ....-..++|++..+. ..++.+++ .+++-.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 34679999999999999999999863 2223456778888653 44554443 222210
Q ss_pred -CCCCCChHHHHHHHHHHhCC-ceEEEEEcCCC----CCChhhHHHHHHhhcC-CCCCCEEEEecCc
Q 036466 135 -NHGNLDPDRLQKVLRDSLNG-KRYLLVMDDVW----NEDPRAWGELKSLLLG-GAEGSKILVTTRS 194 (727)
Q Consensus 135 -~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~----~~~~~~~~~~~~~l~~-~~~~~~iliTsr~ 194 (727)
.......+.+...+.+.... ++-++|+|.+. ..+......+...+.. ...+..+++|+..
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 01112335566666666654 56689999974 1222223333222321 1234556777653
No 260
>PTZ00301 uridine kinase; Provisional
Probab=97.11 E-value=0.0018 Score=61.52 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 261
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.10 E-value=0.013 Score=52.53 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=66.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC---CCHHHHHHHHHHHh-----cCC-CCCCCChHH-----
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED---SGKRQIMTKIINSV-----TGG-NHGNLDPDR----- 143 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~ll~~l-----~~~-~~~~~~~~~----- 143 (727)
+|-|++..|.||||+|-..+. +..++--.+.++-.-+. .+....++.+ ..+ +.. .....+..+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 788999999999999988777 44444444555444333 2333333333 111 000 001111111
Q ss_pred --HHHHHHHHhCC-ceEEEEEcCCCCC---ChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 144 --LQKVLRDSLNG-KRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 144 --~~~~l~~~l~~-~~~LlvlDd~~~~---~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
..+..++.+.. +-=|+|||++-.. .....+.+.+.+....++..||+|.|...-
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 12222333333 3459999998432 233556677777777778899999998643
No 262
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.10 E-value=0.0019 Score=70.82 Aligned_cols=135 Identities=12% Similarity=0.166 Sum_probs=81.4
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....++|+...++++.+.+.... .....|.|+|.+|+||+++|+.+..... ..-...+.++|..... ..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~ 256 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAES 256 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHH
Confidence 35679999999999999987764 2345799999999999999999987321 1222345667765432 22221
Q ss_pred HHHHhcCCCCCCC--ChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecC
Q 036466 127 IINSVTGGNHGNL--DPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTR 193 (727)
Q Consensus 127 ll~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr 193 (727)
.+++...... ........+.. ...-.|+||+++.........+...+.... ...+||.||.
T Consensus 257 ---~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 257 ---ELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred ---HhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 2222110000 00000001211 123357899999988777777777775421 2468888886
Q ss_pred ch
Q 036466 194 SN 195 (727)
Q Consensus 194 ~~ 195 (727)
..
T Consensus 331 ~~ 332 (509)
T PRK05022 331 RD 332 (509)
T ss_pred CC
Confidence 54
No 263
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0039 Score=70.41 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=80.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCC--CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGES--ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
...+|-++.+..+.+++.....+-. .+.-+..+.|+.|+|||.||++++. .+-+-.+..+-++.++. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 4567888888888888876543222 2577999999999999999999987 33222233344444432 22
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHhCCce-EEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 127 IINSVTGGNHGNLDPDRLQKVLRDSLNGKR-YLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 127 ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
...+.+.+ +.....+....+.+.++.+| .+|.|||++..+......+...+..
T Consensus 633 -vskligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 -VSKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred -hhhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 33442222 22333344557788888877 5778999999887777766666654
No 264
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.08 E-value=0.001 Score=60.30 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=6.1
Q ss_pred ccCcccceeeccc
Q 036466 569 KYLSSLERLIFDE 581 (727)
Q Consensus 569 ~~l~~L~~L~l~~ 581 (727)
..+++|+.|++..
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3444555555443
No 265
>PRK09354 recA recombinase A; Provisional
Probab=97.07 E-value=0.009 Score=60.77 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCChHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-----NHGNLDPDRLQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~~~~~~~l 148 (727)
+.-+++.|+|++|+|||||+.+++.. .+..-...+|++..+..+.. .+..++.. .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34579999999999999999999874 44445667899887765542 34444311 11223455666666
Q ss_pred HHHhCC-ceEEEEEcCCC
Q 036466 149 RDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 149 ~~~l~~-~~~LlvlDd~~ 165 (727)
....++ ..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 666554 56689999984
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.06 E-value=0.0023 Score=69.07 Aligned_cols=87 Identities=24% Similarity=0.320 Sum_probs=57.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL- 152 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l- 152 (727)
++-+++.++|++|+||||||+-++++ .-| .++=++++...+...+-..+...+... ..+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNH---------------SVLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhc---------------cccc
Confidence 45689999999999999999877762 122 244555666555555555555554221 122
Q ss_pred -CCceEEEEEcCCCCCChhhHHHHHHhhc
Q 036466 153 -NGKRYLLVMDDVWNEDPRAWGELKSLLL 180 (727)
Q Consensus 153 -~~~~~LlvlDd~~~~~~~~~~~~~~~l~ 180 (727)
+++|.-+|+|++|.......+.+.+.+.
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2588899999998877655666665554
No 267
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.06 E-value=0.0063 Score=66.82 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=76.5
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....++|....+.++.+.+..... ....|.|+|.+|+||+.+|+.+.... ...-...+.++|.... .+.+..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~--~~~~e~ 273 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIP--DDVVES 273 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCC--HHHHHH
Confidence 345799999988888887765432 23358999999999999999876531 1111223456666543 222222
Q ss_pred HHHHhcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecC
Q 036466 127 IINSVTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTR 193 (727)
Q Consensus 127 ll~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr 193 (727)
.+.+....... .+.....+.. ...-.|+||+++.........+...+.... ...|||.||.
T Consensus 274 ---elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 274 ---ELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred ---HhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecC
Confidence 22221110000 0000001111 123457899999988767777777775421 1347888776
Q ss_pred ch
Q 036466 194 SN 195 (727)
Q Consensus 194 ~~ 195 (727)
..
T Consensus 348 ~~ 349 (520)
T PRK10820 348 KN 349 (520)
T ss_pred CC
Confidence 54
No 268
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.06 E-value=0.017 Score=58.11 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=60.4
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
.+.|+-..+....+..++.. .+.|.|.|++|+||||+|+.++. .....| +.+.+.......++...-
T Consensus 44 d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhcCCCc
Confidence 34566666666777777743 23599999999999999999998 333322 244454444443333321
Q ss_pred HHHhcCCCC-CCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHh
Q 036466 128 INSVTGGNH-GNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSL 178 (727)
Q Consensus 128 l~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~ 178 (727)
...+..... ..... ..+-.. ..+++.+++|+++.........+...
T Consensus 111 ~~~l~~g~~~~~f~~----GpL~~A-~~~g~illlDEin~a~p~~~~~L~~l 157 (327)
T TIGR01650 111 AIVLKDGKQITEFRD----GILPWA-LQHNVALCFDEYDAGRPDVMFVIQRV 157 (327)
T ss_pred eeeccCCcceeEEec----CcchhH-HhCCeEEEechhhccCHHHHHHHHHH
Confidence 111100000 00000 011111 13567899999987765444443333
No 269
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.04 E-value=0.015 Score=56.37 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=61.4
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC-CceE-EE---EecCCCCHHHHHHHHHH
Q 036466 55 YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF-ELKI-WI---CVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 55 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~-~~---~~~~~~~~~~~~~~ll~ 129 (727)
+..+..+..++..+ .+.++-++.++|++|+||.-+++.++++....+-- +.+- |+ ++.....+++-.
T Consensus 92 ~~Vv~alk~~~~n~---~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk----- 163 (344)
T KOG2170|consen 92 QLVVNALKSHWANP---NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK----- 163 (344)
T ss_pred HHHHHHHHHHhcCC---CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH-----
Confidence 34444455555543 35678899999999999999999988863322211 1110 11 111111111111
Q ss_pred HhcCCCCCCCChHHHHHHHHHHhCC-ceEEEEEcCCCCCChhhHHHHHHhhc
Q 036466 130 SVTGGNHGNLDPDRLQKVLRDSLNG-KRYLLVMDDVWNEDPRAWGELKSLLL 180 (727)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~~~~~~~~~~l~ 180 (727)
+++..+++..+.. ++-|+|||+++.+..+-.+.+...+.
T Consensus 164 ------------~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 164 ------------EELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ------------HHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 2333444444433 78899999999988766666655554
No 270
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.03 E-value=0.0039 Score=67.44 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 45 FVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 45 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
|....+++--.+-++++..||.....+ ....++++++|++|+||||.++.++..
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 344456777778899999999764322 234679999999999999999988873
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0032 Score=61.83 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=47.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
..-++++|++|+|||.||.++.+. ....--.+.|++ ..+++.++-..... ......+.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-c
Confidence 446999999999999999999984 333323455654 44555555555421 111122333221 2
Q ss_pred eEEEEEcCCCCCChhhH
Q 036466 156 RYLLVMDDVWNEDPRAW 172 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~~ 172 (727)
-=||||||+.......|
T Consensus 168 ~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 168 VDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCEEEEecccCccCCHH
Confidence 34889999966543333
No 272
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.0042 Score=60.50 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=51.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcC------CceEEEEecCCCCHHHHHHHHHHHhcCCC---------CCCC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHF------ELKIWICVSEDSGKRQIMTKIINSVTGGN---------HGNL 139 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~ 139 (727)
.-.++.|+|++|+|||+++.+++... .... ..++|++.....+... +.++........ ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCC
Confidence 45699999999999999999998742 2222 5678988766555433 333333321110 0112
Q ss_pred ChHHHHHHHHHHhC----CceEEEEEcCCC
Q 036466 140 DPDRLQKVLRDSLN----GKRYLLVMDDVW 165 (727)
Q Consensus 140 ~~~~~~~~l~~~l~----~~~~LlvlDd~~ 165 (727)
+.+++...+.+... .+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 34444444444432 244578888873
No 273
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0017 Score=69.87 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=90.2
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
....+.+|.++..+++.+++.-..=..+.+-+++.++|++|+|||.+|+.++. ...+.|. -+++++-.+..++-.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKG 482 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcc
Confidence 44677889999999999987532111123457999999999999999999998 4444441 234444433333211
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------------hhhHHHHHHhhcC-CCCCCEE
Q 036466 126 KIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------------PRAWGELKSLLLG-GAEGSKI 188 (727)
Q Consensus 126 ~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~~~~~~~l~~-~~~~~~i 188 (727)
. ...+.+.-+..+++.+.+. +-.+=|+.||++|... +++-..+.+.+.+ .-.=|+|
T Consensus 483 H------RRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 483 H------RRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred c------ceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 0 0111122223333333332 2234577788886521 1111122222211 1123555
Q ss_pred EEecCchHHHHH-HhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 189 LVTTRSNKVALI-MATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 189 liTsr~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
+....-..+... -........|++.+...+|-+++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 532211111100 0011233789999999999888777654
No 274
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.017 Score=54.19 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred ceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
+.-|.+-+.+++.+++.-+.. -+-++++-|.++|++|.|||.||++++++. ... |+.+.+ .+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t--~a~-----firvvg----se 224 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT--TAA-----FIRVVG----SE 224 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc--chh-----eeeecc----HH
Confidence 355777777778777654421 112467889999999999999999999852 222 343322 12
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHH-HHHhhc---CC--CCCC
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGE-LKSLLL---GG--AEGS 186 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~-~~~~l~---~~--~~~~ 186 (727)
+.+..+ ++ .+..+.+.++-.-...+.+|++|+++... ..+... +...+. .. ..+.
T Consensus 225 fvqkyl----ge-----gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nv 295 (408)
T KOG0727|consen 225 FVQKYL----GE-----GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNV 295 (408)
T ss_pred HHHHHh----cc-----CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccce
Confidence 222222 11 11223333333334578899999985521 112222 223332 22 3467
Q ss_pred EEEEecCchHH-HHHH-hhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 187 KILVTTRSNKV-ALIM-ATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 187 ~iliTsr~~~~-~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
+||..|..... ...+ ..-.-++.++.+--+..+-.-.|....
T Consensus 296 kvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred EEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 77776654322 2221 111223566666444444444555443
No 275
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.02 E-value=0.0014 Score=59.92 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC--ce
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG--KR 156 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~--~~ 156 (727)
+.|.|.+|+|||++|.+++.. .....+|+......+. ++.+.+.+-. ...+......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~-~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHR-KRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHH-HhCCCCceEeecHHHHHHHHHhcCCC
Confidence 689999999999999998863 2235667766554433 3444433321 1112223323333334444421 23
Q ss_pred EEEEEcCC
Q 036466 157 YLLVMDDV 164 (727)
Q Consensus 157 ~LlvlDd~ 164 (727)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47889997
No 276
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.0034 Score=59.03 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCC---CCCCChHHHH-HHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGN---HGNLDPDRLQ-KVLRD 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~---~~~~~~~~~~-~~l~~ 150 (727)
+++++++|+.|+||||.+.+++.....+ -..+..++..... ...+-++.+++.++.+- ....++.+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999999854333 3446677765443 44466777778776431 1222333333 34444
Q ss_pred HhCCceEEEEEcCCCCC
Q 036466 151 SLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 151 ~l~~~~~LlvlDd~~~~ 167 (727)
.-.++-=++++|-....
T Consensus 79 ~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp HHHTTSSEEEEEE-SSS
T ss_pred HhhcCCCEEEEecCCcc
Confidence 32233347888887543
No 277
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.01 E-value=0.00046 Score=63.22 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhH-hcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVE-EHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
..++.+.|++|+|||.+|+.++. ... +.....+-++++.... .+-...++..+...... .... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~---------~v~~---~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPG---------YVGA---E 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTC---------HHHH---H
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccc---------eeec---c
Confidence 46899999999999999999998 333 4445566677766544 11111122222111000 0000 0
Q ss_pred ceEEEEEcCCCCCCh-----------hhHHHHHHhhc
Q 036466 155 KRYLLVMDDVWNEDP-----------RAWGELKSLLL 180 (727)
Q Consensus 155 ~~~LlvlDd~~~~~~-----------~~~~~~~~~l~ 180 (727)
..-+|+||+++..+. ..+..+...+-
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 112999999999888 77777777664
No 278
>PRK14974 cell division protein FtsY; Provisional
Probab=97.01 E-value=0.008 Score=61.27 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCC---CCCChHH-HHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNH---GNLDPDR-LQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~---~~~~~~~-~~~~l~ 149 (727)
.+++++++|++|+||||++.+++.. ....-..++++...... ...+-++.....++.+.. ...++.. +.+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4689999999999999999999873 33322234445433221 223345556666643211 1222222 233333
Q ss_pred HHhCCceEEEEEcCCCCCC--hhhHHHHHHhhcCCCCCCEEEEec
Q 036466 150 DSLNGKRYLLVMDDVWNED--PRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~~~--~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
.......=++++|...... ...+..+........|...++|.+
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 3222223389999986652 333444443333223444455544
No 279
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.00 E-value=0.0012 Score=61.39 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC 113 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~ 113 (727)
...+|++.|++|+||||+|+.++. .....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999998 4555565655653
No 280
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.011 Score=60.30 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=58.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL 152 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l 152 (727)
.+.++++++|+.|+||||++..++.. ....-..+.++++..... ..+-++...+.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 34689999999999999999999874 322223566777654432 344555556655433223345666666665543
Q ss_pred C-CceEEEEEcCCCCC
Q 036466 153 N-GKRYLLVMDDVWNE 167 (727)
Q Consensus 153 ~-~~~~LlvlDd~~~~ 167 (727)
. +..=+|++|-....
T Consensus 282 ~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 282 YVNCVDHILIDTVGRN 297 (407)
T ss_pred hcCCCCEEEEECCCCC
Confidence 2 33467888988553
No 281
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0043 Score=57.98 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.+|+|.|.+|+||||+|+++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3468999999999999999999998
No 282
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0018 Score=59.65 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=39.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhH-hcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVE-EHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
.|+|+|++|+||||||+++....... -+.|.+.|-. .+...+.++..+.+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---------------------NWQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---------------------ccccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999987632111 1223333311 1223344556666666666655
Q ss_pred EEEEEcCCC
Q 036466 157 YLLVMDDVW 165 (727)
Q Consensus 157 ~LlvlDd~~ 165 (727)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778873
No 283
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.036 Score=55.63 Aligned_cols=171 Identities=12% Similarity=0.042 Sum_probs=98.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcch---h-----hHhcCCceEEEEe-cCCCCHHHHHHHH
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQ---R-----VEEHFELKIWICV-SEDSGKRQIMTKI 127 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~---~-----~~~~f~~~~~~~~-~~~~~~~~~~~~l 127 (727)
.++.+.+.+... .-.++..++|+.|+||+++|.+++... . ...+-+.+.+++. +....+ +-.+++
T Consensus 4 ~~~~l~~~i~~~-----~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v-d~Ir~l 77 (299)
T PRK07132 4 WIKFLDNSATQN-----KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK-SEFLSA 77 (299)
T ss_pred HHHHHHHHHHhC-----CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH-HHHHHH
Confidence 345566666542 345688899999999999999998742 0 0111112222221 111111 112233
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHHHhhcCC
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMATMRG 206 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~~~~~~~ 206 (727)
...+.-.. .-.+.+=++|+|+++.......+.+...+-..++.+.+|++|... .+.... ...
T Consensus 78 ~~~~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI--~SR 140 (299)
T PRK07132 78 INKLYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI--VSR 140 (299)
T ss_pred HHHhccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH--HhC
Confidence 33331100 001356688899998888778888888888777777777656443 222211 223
Q ss_pred CCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 036466 207 TTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRT 259 (727)
Q Consensus 207 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 259 (727)
...++..++++++..+++... +.+ .+.+..++...+|.-.|+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~~----~~~-----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLSK----NKE-----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred eEEEECCCCCHHHHHHHHHHc----CCC-----hhHHHHHHHHcCCHHHHHHH
Confidence 488999999999999888763 111 23456666666663345544
No 284
>PTZ00494 tuzin-like protein; Provisional
Probab=96.93 E-value=0.13 Score=53.14 Aligned_cols=173 Identities=11% Similarity=0.156 Sum_probs=105.9
Q ss_pred cCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 43 HSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 43 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
..+..++.+|.|+++-.-+.+.|.+.. ...+|.++++|..|.|||+|.+...... --..+||+++. .++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg---~ED 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGG---TED 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecC---Ccc
Confidence 344567789999999988888887754 2568999999999999999998887632 22356888875 466
Q ss_pred HHHHHHHHhcCCCCCC--CChHHHHHHHHHHh---CCc-eEEEE-EcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 123 IMTKIINSVTGGNHGN--LDPDRLQKVLRDSL---NGK-RYLLV-MDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~--~~~~~~~~~l~~~l---~~~-~~Llv-lDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
-++.+++.++.+..+. .-++-+.+..+..- .++ |+|++ |-+-.+.. ..+.+....-. ...-|.|++---.+
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~-RVYnE~vaLac-DrRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLG-RVYGEVVSLVS-DCQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHH-HHHHHHHHHHc-cchhheeeeechHh
Confidence 7788888887654332 22333333333332 233 33332 22221111 12333222222 22346677654444
Q ss_pred HHHHHHhhcCCCCceecCCCChhhHHHHHHHhh
Q 036466 196 KVALIMATMRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
.+...........-|.++.|+.++|.+|-++..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 333332333344678999999999999988754
No 285
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.93 E-value=0.0033 Score=63.40 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=56.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCChHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-----NHGNLDPDRLQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~~~~~~~l 148 (727)
+.-+++.|+|++|+|||||+.+++.. ....-...+|++..+..+.. .+..++.. -....+.+++...+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34579999999999999999999873 44444567899886655542 33333211 11223455666666
Q ss_pred HHHhCC-ceEEEEEcCCC
Q 036466 149 RDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 149 ~~~l~~-~~~LlvlDd~~ 165 (727)
....++ ..-++|+|.+.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 665554 56789999973
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.93 E-value=0.0033 Score=63.34 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=55.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCChHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-----NHGNLDPDRLQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~~~~~~~l 148 (727)
+.-+++.|+|++|+|||||+.+++.. ....-..++|++..+..+.. .+.+++.. ..+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34579999999999999999998874 33444567799876654442 33444311 11223455566666
Q ss_pred HHHhCC-ceEEEEEcCCC
Q 036466 149 RDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 149 ~~~l~~-~~~LlvlDd~~ 165 (727)
....+. ..-++|+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 665543 56799999984
No 287
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0031 Score=61.06 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=58.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
..++.++|||++|.|||-+|+.++. ...-.| +.++. ..+ .+...+.+..-+.+..+.+-.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf-----l~v~s------------s~l-v~kyiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA--TMGVNF-----LKVVS------------SAL-VDKYIGESARLIRDMFRYARE 223 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH--hcCCce-----EEeeH------------hhh-hhhhcccHHHHHHHHHHHHhh
Confidence 3578999999999999999999997 333222 22211 011 011111222222233333333
Q ss_pred CceEEEEEcCCCCC-----------C---hhhHHHHHHhhcCC--CCCCEEEEecCchHHH
Q 036466 154 GKRYLLVMDDVWNE-----------D---PRAWGELKSLLLGG--AEGSKILVTTRSNKVA 198 (727)
Q Consensus 154 ~~~~LlvlDd~~~~-----------~---~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~ 198 (727)
..+|+|++|++|.. + +..+..+...+... ....++|.||.+.+..
T Consensus 224 ~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 224 VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 46899999999652 1 12233344444332 4568899988776544
No 288
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.011 Score=55.82 Aligned_cols=51 Identities=27% Similarity=0.212 Sum_probs=38.3
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++.-|=.++++.|.+.+..+.- -.-++++-|.++|++|.|||-+|++++++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 3455778889988887654321 11245778999999999999999999983
No 289
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.90 E-value=0.0097 Score=67.04 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred CceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
.++.|.+...+++.+.+..... .....++-+.++|++|+|||++|+.++.. ...+ |+.++. .+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~-----f~~is~----~~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP-----FFTISG----SD 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----EEEEeh----HH
Confidence 3456767666666554432110 01122456999999999999999999862 2222 222221 11
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHHHHHh----hcCC--CCCC
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKSL----LLGG--AEGS 186 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~~~~~----l~~~--~~~~ 186 (727)
+.. .. .......+.+.+.......+++|+||++|... .......... +... ..+.
T Consensus 221 ~~~----~~-----~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FVE----MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hHH----hh-----hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 111 11 11122233334444444578999999996631 1112222222 2221 2344
Q ss_pred EEEEecCchHHHH-HHhh-cCCCCceecCCCChhhHHHHHHHhhcc
Q 036466 187 KILVTTRSNKVAL-IMAT-MRGTTGYNLQELPYKDCLSLFMKCAFK 230 (727)
Q Consensus 187 ~iliTsr~~~~~~-~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~ 230 (727)
-+|.||...+... .... .+.++.+.+..-+.++..+++......
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 5555666554322 2221 223467888888888888888876633
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.012 Score=60.74 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-SGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
..+++++|++|+||||++.+++.....+.....+.+++.... ....+-++.+.+.++.+.....+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 469999999999999999999984322222234556665433 233445555555654332222333334344443 333
Q ss_pred ceEEEEEcCCCCC
Q 036466 155 KRYLLVMDDVWNE 167 (727)
Q Consensus 155 ~~~LlvlDd~~~~ 167 (727)
+-+++||.....
T Consensus 216 -~DlVLIDTaG~~ 227 (374)
T PRK14722 216 -KHMVLIDTIGMS 227 (374)
T ss_pred -CCEEEEcCCCCC
Confidence 356669998554
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.86 E-value=0.018 Score=61.03 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=50.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCC---CCChHHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHG---NLDPDRLQKVLRD 150 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~---~~~~~~~~~~l~~ 150 (727)
.+.++.++|.+|+||||++.+++.. ....-..+..+++.... ...+.+..+..+++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5789999999999999999999974 33332245555554332 2234455566665433221 1233332222222
Q ss_pred HhCCceEEEEEcCCCC
Q 036466 151 SLNGKRYLLVMDDVWN 166 (727)
Q Consensus 151 ~l~~~~~LlvlDd~~~ 166 (727)
...+. -++|+|....
T Consensus 172 ~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 172 KFKKA-DVIIVDTAGR 186 (437)
T ss_pred HhhcC-CEEEEECCCc
Confidence 22333 5788888843
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.019 Score=61.01 Aligned_cols=103 Identities=20% Similarity=0.162 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
.+++++.|++|+||||++.+++...........+.+++...... ..+.+....+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46899999999999999999887432122234566777654321 12233344444433322233444555555543 2
Q ss_pred ceEEEEEcCCCCC--ChhhHHHHHHhhc
Q 036466 155 KRYLLVMDDVWNE--DPRAWGELKSLLL 180 (727)
Q Consensus 155 ~~~LlvlDd~~~~--~~~~~~~~~~~l~ 180 (727)
..=+|++|..... +......+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3457888976432 3333344444444
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.83 E-value=0.014 Score=53.99 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=47.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCC---CCCCCChHHHH-HHHHHHh
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGG---NHGNLDPDRLQ-KVLRDSL 152 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~---~~~~~~~~~~~-~~l~~~l 152 (727)
++++.|++|+||||+++.++.. ....-..++++++.... ...+.+...+...+.+ .....++.++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999873 33332345566654322 2223344444443211 11223333333 3444444
Q ss_pred CCceEEEEEcCCCCC
Q 036466 153 NGKRYLLVMDDVWNE 167 (727)
Q Consensus 153 ~~~~~LlvlDd~~~~ 167 (727)
....-++|+|.....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 444446668887543
No 294
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.83 E-value=0.00083 Score=58.04 Aligned_cols=22 Identities=50% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+|+|.|++|+||||+|++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 295
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.83 E-value=0.013 Score=70.61 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++-|.++|++|+|||.||++++.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999984
No 296
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.82 E-value=0.019 Score=57.71 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC------CCCChHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH------GNLDPDRLQKVLR 149 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~~~~~~l~ 149 (727)
-.+++|.|++|+||||++.+++.... ...-..++|++... +..++...+...+..... ...+.++....+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 35899999999999999999987422 22234677887755 355666666554422111 1223333333333
Q ss_pred HHhCCceEEEEEcCCCC
Q 036466 150 DSLNGKRYLLVMDDVWN 166 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~ 166 (727)
+ +...+.+.+.|....
T Consensus 107 ~-~~~~~~l~i~d~~~~ 122 (271)
T cd01122 107 E-FEGTGRLFMYDSFGE 122 (271)
T ss_pred H-hcCCCcEEEEcCCCc
Confidence 3 333444566676644
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.011 Score=61.50 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHh--cCCceEEEEecCCCCH-HHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEE--HFELKIWICVSEDSGK-RQIMTKIINSVTGGNHGNLDPDRLQKVLRDS 151 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~ 151 (727)
.+++++++|+.|+||||.+.+++....... +-..+..+++...... .+-++.+++.++.+-......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 467999999999999999999997533321 2234556665543222 2234455555544322333445555555443
Q ss_pred hCCceEEEEEcCCCCCCh--hhHHHHHHhhcC
Q 036466 152 LNGKRYLLVMDDVWNEDP--RAWGELKSLLLG 181 (727)
Q Consensus 152 l~~~~~LlvlDd~~~~~~--~~~~~~~~~l~~ 181 (727)
.+.-++++|.+..... ..+..+...+..
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3456889999966532 233455555543
No 298
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.81 E-value=0.005 Score=60.35 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=38.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
.-.++.|+|++|+|||+++.+++........ ...++|++.....+. +.+.+++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~-~rl~~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP-ERLVQIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH-HHHHHHHHHh
Confidence 4579999999999999999999864222221 357889988775554 3344444443
No 299
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0088 Score=57.63 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC-----CCCHHHHHHHHHHHhcCCC------CCCCChHH-
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE-----DSGKRQIMTKIINSVTGGN------HGNLDPDR- 143 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~ll~~l~~~~------~~~~~~~~- 143 (727)
-.+++|+|.+|+||||+++.+.. ... .-.+.++..-.. .....+...+++...+... +.+.+..+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999997 333 333333333111 1123345666666664221 12222222
Q ss_pred HHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcC--CCCCCEEEEecCchHHHHHH
Q 036466 144 LQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG--GAEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 144 ~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~--~~~~~~iliTsr~~~~~~~~ 201 (727)
..-.+.+++.-++-++|.|+...+ +...-.++...+.. ...|...+..|.+-.+....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 334567788889999999997543 22122233333322 23466688888877666544
No 300
>PRK06696 uridine kinase; Validated
Probab=96.80 E-value=0.0015 Score=63.19 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=36.3
Q ss_pred ecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 53 GRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 53 Gr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|++.+++|.+.+.... .+.+.+|+|.|.+|+||||+|++++..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47788888888886532 246789999999999999999999984
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.78 E-value=0.011 Score=55.58 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
+.|.|++|+|||+++.+++.. ....-..++|++... +..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 689999999999999999874 223335577887654 34444443
No 302
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.78 E-value=0.0017 Score=43.99 Aligned_cols=34 Identities=44% Similarity=0.673 Sum_probs=18.0
Q ss_pred cCcEEeccCCccccccCccccCCCCCCEeecCCCC
Q 036466 454 QLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCL 488 (727)
Q Consensus 454 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 488 (727)
+|++|++++|. +..+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 45566666655 33455445566666666665543
No 303
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.78 E-value=0.056 Score=54.91 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=35.8
Q ss_pred ceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHH
Q 036466 209 GYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVR 258 (727)
Q Consensus 209 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 258 (727)
.+++++++.+|+..++.-+....-.......+...+++....+|+|.-+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 78999999999999998766432222223445566777778899997653
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.77 E-value=0.011 Score=57.71 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....++.|.|++|+|||++|.+++.. ....-...+|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 34579999999999999999998874 223345678888765 45555554
No 305
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.75 E-value=0.0066 Score=60.87 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=48.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
..+++++.|++|+||||++.+++.....+..-..+.+++..... ...+.+....+.++.+.....+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999999998743322111345566665432 122333333444332222233444554455443 2
Q ss_pred CceEEEEEcCC
Q 036466 154 GKRYLLVMDDV 164 (727)
Q Consensus 154 ~~~~LlvlDd~ 164 (727)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 346777754
No 306
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.74 E-value=0.0029 Score=59.67 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh---
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL--- 152 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l--- 152 (727)
-++++|.|++|+||||+++.+.......+ ..+.+.......... +....+.. ...+...+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~----L~~~~~~~------a~Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKE----LREKTGIE------AQTIHSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHH----HHHHHTS-------EEEHHHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHH----HHHhhCcc------hhhHHHHHhcCCccc
Confidence 35899999999999999999887433322 222332322212222 22222100 000000000000
Q ss_pred ------CCceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec
Q 036466 153 ------NGKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 153 ------~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
..+.-+||+|++...+...+..+...... .++++|+.=
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 12335999999987777677777666655 467777765
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0094 Score=61.86 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
.+++++.|++|+||||++.+++........ ..+..++...... ..+.+...+..++.+.....+...+.+.+. +.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---RD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---hC
Confidence 568999999999999999999974322222 2344454433222 223334444444332211111222222222 22
Q ss_pred ceEEEEEcCCCC--CChhhHHHHHHhh
Q 036466 155 KRYLLVMDDVWN--EDPRAWGELKSLL 179 (727)
Q Consensus 155 ~~~LlvlDd~~~--~~~~~~~~~~~~l 179 (727)
..=+|++|-... .+..+...+...+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~ 325 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFY 325 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHH
Confidence 334688995432 2334444554444
No 308
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.74 E-value=0.022 Score=51.42 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcC-CCCCCEEEEecCchHHHHHH
Q 036466 141 PDRLQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLG-GAEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 141 ~~~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~-~~~~~~iliTsr~~~~~~~~ 201 (727)
-++..-.|.++.-++|-+++-|+--- .|+..-..+...+.. ..-|+.|++.|.+..+...+
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34455667777788899999997422 232222223333322 34689999999998876654
No 309
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.73 E-value=0.011 Score=56.64 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.+..+|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.022 Score=52.74 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcC-CCCCCEEEEecCchHHHHHHh
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG-GAEGSKILVTTRSNKVALIMA 202 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~-~~~~~~iliTsr~~~~~~~~~ 202 (727)
+..-.|.+.|.=+|=++.||+.-.. |++...+....+.. ...|...++.|.+-..+..+.
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 4445677888888889999998553 44444444444433 235666777777776666543
No 311
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.71 E-value=0.0056 Score=62.02 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhH----hcCCceEEEEecCCCCHHHHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVE----EHFELKIWICVSEDSGKRQIMTKIINSVT 132 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~ll~~l~ 132 (727)
.-+++-|+|++|+|||+++.+++...... +.-..++|++..+.++.+.+. +++..++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 45789999999999999999887642222 122467899988877776654 4555553
No 312
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.68 E-value=0.0011 Score=74.53 Aligned_cols=149 Identities=22% Similarity=0.259 Sum_probs=90.4
Q ss_pred CeeEEEeccCCCcchhhhhhhhhcCCCcceEEEecCCCcc--ccccccCCCCcCcEEeccCCccccccCccccCCCCCCE
Q 036466 404 RVRTILFPIDDERTSQSFVTSCISKSKSLRVLVLTNSAIE--VLPRKMGNLKQLRHLDLSGNRKIKKLPNSICELQSLQT 481 (727)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 481 (727)
+++++.+.+ .+.....+....-..+|+|++|.+++-.+. .+...+..+++|..||++++. ++.+ .+++.+++|+.
T Consensus 123 nL~~LdI~G-~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISG-SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccc-cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 345555432 222333444455567899999999987664 223345678899999999887 4444 56888899998
Q ss_pred eecCCCCCCc-ccChhhcccccCceeEeccccccccc-------ccCCCCCCCcEEeccccCCchhhhhh-ccCCCCcCe
Q 036466 482 LNLGDCLELE-ELPKDIRYLVSLRMFVVTTKQKSLLE-------SGIGCLSSLRFLMISNCGNLEYLFED-IDQLSVLRS 552 (727)
Q Consensus 482 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~ 552 (727)
|.+.+=.+.. .--..+-++++|+.||++.......+ ..-..+|+|+.|+.+++.....+.+. +...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887533222 11245667889999998865544222 12234678888888876544433322 233455555
Q ss_pred eec
Q 036466 553 LVV 555 (727)
Q Consensus 553 L~l 555 (727)
+.+
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.68 E-value=0.0012 Score=70.54 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=41.3
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+++|.++.++++.++|.....+-+..-+++.+.|++|+|||+||+.++.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999554333345567999999999999999999997
No 314
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.67 E-value=0.027 Score=54.94 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC--------------------
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-------------------- 134 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------------- 134 (727)
.-..++|.|++|+|||+++.+++... ...-..++|++.... ..++... +.+++..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45699999999999999999887632 223456778876443 3333322 2222100
Q ss_pred --CC--CCCChHHHHHHHHHHhCC---ceEEEEEcCCCCC---ChhhHHHHHHhhcC--CCCCCEEEEecCc
Q 036466 135 --NH--GNLDPDRLQKVLRDSLNG---KRYLLVMDDVWNE---DPRAWGELKSLLLG--GAEGSKILVTTRS 194 (727)
Q Consensus 135 --~~--~~~~~~~~~~~l~~~l~~---~~~LlvlDd~~~~---~~~~~~~~~~~l~~--~~~~~~iliTsr~ 194 (727)
.. ...+.+++...+++..+. +.-.+|+|.+... +......+...+.. ...++.+++|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 00 123566667777766543 3457899998433 21111121111211 2357788888863
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.64 E-value=0.0044 Score=58.66 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceE
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRY 157 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 157 (727)
.++|.|++|+||||+++.+... ........++.. ... .+..... ...+........+.....+.++..++..+=
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~--~E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDP--IEFVHES-KRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCC--ccccccC-ccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 7899999999999999887763 322223332221 111 1111000 000000001112233455677788877788
Q ss_pred EEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 158 LLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 158 LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
++++|++.+.+ .......... .|..++.|+...+..
T Consensus 77 ~ii~gEird~e--~~~~~l~~a~---~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDLE--TIRLALTAAE---TGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCHH--HHHHHHHHHH---cCCEEEEEecCCcHH
Confidence 99999995332 3333222222 355677777665443
No 316
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.60 E-value=0.0081 Score=65.46 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=76.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcch-hhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQ-RVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
..++|....++++.+.+.... .....|.|+|.+|+||+.+|+.+.+.. +..++ .+-++|.... ...+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~p---fv~inC~~l~--e~lle-- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFP---FVAINCGAIA--ESLLE-- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCC---EEEeccccCC--hhHHH--
Confidence 358999999999988886543 223579999999999999999998632 11122 2345555432 22222
Q ss_pred HHHhcCCCCCCCChHH--HHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCc
Q 036466 128 INSVTGGNHGNLDPDR--LQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRS 194 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~--~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~ 194 (727)
..+++.......... ...-+.+. ...-.|+||++++........+...+.... ...|||.+|..
T Consensus 281 -seLFG~~~gaftga~~~~~~Gl~e~--A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 -AELFGYEEGAFTGARRGGRTGLIEA--AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred -HHhcCCcccccccccccccccchhh--cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 223221111000000 00001111 134468999999988777777777775421 13478887754
Q ss_pred h
Q 036466 195 N 195 (727)
Q Consensus 195 ~ 195 (727)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 317
>PRK04328 hypothetical protein; Provisional
Probab=96.60 E-value=0.02 Score=56.42 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=53.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC---------------C----
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG---------------N---- 135 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------------~---- 135 (727)
.-.++.|.|++|+|||+++.+++.. ....-...+|++..+. ..++.+ .++.++-. .
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEecccccc
Confidence 4569999999999999999998874 2233456778887653 334333 22322210 0
Q ss_pred -----------CCCCChHHHHHHHHHHhCC-ceEEEEEcCCC
Q 036466 136 -----------HGNLDPDRLQKVLRDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 136 -----------~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 165 (727)
....+.++....+.+..+. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0122455566666666654 44579999983
No 318
>PRK05973 replicative DNA helicase; Provisional
Probab=96.59 E-value=0.019 Score=55.23 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC-----------CCCCCChHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-----------NHGNLDPDRL 144 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~~~~ 144 (727)
-.+++|.|.+|+|||+++.+++... ...-..++|++.... ..++...+. .++.. ..+....++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHH
Confidence 4589999999999999999998742 233345778877653 444444432 22211 0111223333
Q ss_pred HHHHHHHhCCceEEEEEcCCCCCC----hhhHHHHHHhhcC--CCCCCEEEEecCch
Q 036466 145 QKVLRDSLNGKRYLLVMDDVWNED----PRAWGELKSLLLG--GAEGSKILVTTRSN 195 (727)
Q Consensus 145 ~~~l~~~l~~~~~LlvlDd~~~~~----~~~~~~~~~~l~~--~~~~~~iliTsr~~ 195 (727)
...+... .+.=++|||.+...+ ..+...+...+.. ...|.-+|+|+...
T Consensus 139 i~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 139 IARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3333331 234589999985321 1122222222221 23577788887643
No 319
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.011 Score=64.34 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCCCCCceeecchhHHHHHHHHhcCCC-----CCC-CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 44 SFVRPSDIIGRYEDGEKIIELLTQTSD-----GES-ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 44 ~~~~~~~~vGr~~~~~~l~~~l~~~~~-----~~~-~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
|.+.=.+.-|-++....|.+-+.-+.. +.+ .+..-|.+||++|.|||-+|++|+... ...|+++-+.
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-------sL~FlSVKGP 739 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-------SLNFLSVKGP 739 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-------eeeEEeecCH
Confidence 333335677888877778777644311 111 123469999999999999999999731 1235555432
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC
Q 036466 118 SGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 118 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 167 (727)
+++..- .+.+.+.+.+.+.++-..+||+|+||++|..
T Consensus 740 --------ELLNMY-----VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --------ELLNMY-----VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --------HHHHHH-----hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222222 3344555666777776679999999999763
No 320
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.58 E-value=0.025 Score=58.99 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=32.6
Q ss_pred HHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcC-CCCCCEEEEecCchHHHHH
Q 036466 145 QKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG-GAEGSKILVTTRSNKVALI 200 (727)
Q Consensus 145 ~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~-~~~~~~iliTsr~~~~~~~ 200 (727)
.-.+.+.+-+.|.|+|+|+=... |..-...+...+.. ...|..+|+.|..+.+...
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 34567788899999999986443 22122234444432 3456656666665655543
No 321
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.57 E-value=0.0067 Score=59.78 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=38.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
-.++-|+|++|+|||.|+.+++-...... .-..++|++....++...+ .++++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhcc
Confidence 45999999999999999988876433322 2245889998887766554 4566554
No 322
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.56 E-value=0.019 Score=53.54 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=64.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEec--CCCCHHH------HHHHHHHHhcCCC-----CCCCChH-
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVS--EDSGKRQ------IMTKIINSVTGGN-----HGNLDPD- 142 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~------~~~~ll~~l~~~~-----~~~~~~~- 142 (727)
.+++|.|+.|+|||||++.++-. .....+.++++-. ....... ...+++..++... ....+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 48999999999999999988863 2233444443211 1111111 1122444443221 1122222
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCC-CC-CCEEEEecCchHHH
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AE-GSKILVTTRSNKVA 198 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~-~~-~~~iliTsr~~~~~ 198 (727)
...-.+.+.+...+=++++|+-.. .|......+...+... .. +..+|++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 233345556667888999999743 3444444454544432 12 56788888876554
No 323
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.025 Score=56.53 Aligned_cols=186 Identities=20% Similarity=0.164 Sum_probs=97.2
Q ss_pred cCCCCCCceeecchhHHHHHHHHhcCCC-------C-CCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEe
Q 036466 43 HSFVRPSDIIGRYEDGEKIIELLTQTSD-------G-ESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICV 114 (727)
Q Consensus 43 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~-------~-~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~ 114 (727)
.--..-.++-|-+..++++.+.+.-+.. + --.+++-|.++|++|.|||.||++++. +....| +++
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~f-----Inv 158 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAK--EAGANF-----INV 158 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHH--HcCCCc-----cee
Confidence 3334445677888888888887643311 1 012467899999999999999999998 445554 333
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-CCceEEEEEcCCCCC-------Chh----hHHHHHHhhcC-
Q 036466 115 SEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSL-NGKRYLLVMDDVWNE-------DPR----AWGELKSLLLG- 181 (727)
Q Consensus 115 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~-------~~~----~~~~~~~~l~~- 181 (727)
+-..-....+ +. .+.+...+...- +=+|..|++|.++.. +-+ .-.++...+..
T Consensus 159 ~~s~lt~KWf-------------gE-~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl 224 (386)
T KOG0737|consen 159 SVSNLTSKWF-------------GE-AQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGL 224 (386)
T ss_pred eccccchhhH-------------HH-HHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccc
Confidence 2111111110 00 001111111111 226889999998542 111 11223333332
Q ss_pred -CCCCCEEEE---ecCchHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 182 -GAEGSKILV---TTRSNKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 182 -~~~~~~ili---Tsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
...+.+|+| |-|..++....-. +-.+++.+.--+..+-.+++.-..........- ...++++.+.|.-
T Consensus 225 ~s~~~~rVlVlgATNRP~DlDeAiiR-R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~v----D~~~iA~~t~GyS 296 (386)
T KOG0737|consen 225 SSKDSERVLVLGATNRPFDLDEAIIR-RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDV----DLDEIAQMTEGYS 296 (386)
T ss_pred cCCCCceEEEEeCCCCCccHHHHHHH-hCcceeeeCCCchhhHHHHHHHHhcccccCccc----CHHHHHHhcCCCc
Confidence 244557776 6676666554322 123555555555666666666554333332211 2466777777643
No 324
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.54 E-value=0.025 Score=59.29 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=36.8
Q ss_pred CCceeecchhHHHHHHHHh----cCCC---CC-----CCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 48 PSDIIGRYEDGEKIIELLT----QTSD---GE-----SETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~----~~~~---~~-----~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.+|.++.++.+..++. .... .. .-....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4667999999999877662 1000 00 01135799999999999999999986
No 325
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.54 E-value=0.0081 Score=57.47 Aligned_cols=121 Identities=15% Similarity=0.072 Sum_probs=58.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHH--
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLD---PDRLQKVLRD-- 150 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~---~~~~~~~l~~-- 150 (727)
.+.++|+|+.|.||||+.+.+...... .+-...+|.. . . ....+.++...+...+..... ...-.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--~-~-~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--S-A-TIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--C-c-EEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 478999999999999999998753211 1111111110 0 0 001111122222111111111 1111122222
Q ss_pred HhCCceEEEEEcCCCCCCh-hhH----HHHHHhhcCC-CCCCEEEEecCchHHHHHH
Q 036466 151 SLNGKRYLLVMDDVWNEDP-RAW----GELKSLLLGG-AEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 151 ~l~~~~~LlvlDd~~~~~~-~~~----~~~~~~l~~~-~~~~~iliTsr~~~~~~~~ 201 (727)
.+...+-++++|+...... .+. ..+...+... ..+..+|++|...+.....
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2235788999999966432 121 2233344332 2245799999988776654
No 326
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.042 Score=51.55 Aligned_cols=157 Identities=19% Similarity=0.175 Sum_probs=82.3
Q ss_pred ee-ecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHH
Q 036466 51 II-GRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQ 122 (727)
Q Consensus 51 ~v-Gr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 122 (727)
++ |-+++++++.+.+.-+.. -.-..++-+.++|++|.|||-||+.++.+. ++ -|+.+++ .+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c-~firvsg----se 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DC-TFIRVSG----SE 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ce-EEEEech----HH
Confidence 45 467778887776543311 111356789999999999999999998742 22 2455543 22
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC-----------Ch---hhHHHHHHhhcCC--CCCC
Q 036466 123 IMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE-----------DP---RAWGELKSLLLGG--AEGS 186 (727)
Q Consensus 123 ~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~---~~~~~~~~~l~~~--~~~~ 186 (727)
+.+..+.+- ..-+.++.-. +-...+-+|+.|+++.. +. ...-.+...+... ..+.
T Consensus 217 lvqk~igeg------srmvrelfvm---arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIGEG------SRMVRELFVM---AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhhhh------HHHHHHHHHH---HHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 222222110 0001111111 11236788999998652 11 1122233333332 3466
Q ss_pred EEEEec-CchHHHHHHh-hcCCCCceecCCCChhhHHHHHHHh
Q 036466 187 KILVTT-RSNKVALIMA-TMRGTTGYNLQELPYKDCLSLFMKC 227 (727)
Q Consensus 187 ~iliTs-r~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~l~~~~ 227 (727)
+||..| |..-+...+- .-.-++.++.++-+.+...++++-.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 777655 4433333222 2223466788777777767776543
No 327
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.50 E-value=0.0062 Score=61.19 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=45.9
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..|+|.++.+++|.+++..++.+.+..-+++.+.|+.|.||||||+.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999988877777889999999999999999998886
No 328
>PRK08233 hypothetical protein; Provisional
Probab=96.47 E-value=0.0076 Score=56.39 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..+|+|.|.+|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 329
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.032 Score=60.53 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=90.7
Q ss_pred cCCCCCCceeecchhHHHHHHH---HhcCCC---CCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 43 HSFVRPSDIIGRYEDGEKIIEL---LTQTSD---GESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 43 ~~~~~~~~~vGr~~~~~~l~~~---l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
.......+..|.++..+++.+. |..+.. ..+.-++-|.++|++|.|||.||++++- +..-+| ...+.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAg--EA~VPF-----f~iSG 216 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAGVPF-----FSISG 216 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhc--ccCCCc-----eeccc
Confidence 3445566788988776666554 444321 1224578899999999999999999998 333333 22221
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHHHHHHhhc----CC
Q 036466 117 DSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNED----------PRAWGELKSLLL----GG 182 (727)
Q Consensus 117 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~~~~~~~l~----~~ 182 (727)
. +.+..+ .+.......+...++.+..|+++++|.+|... ..++++....+. ..
T Consensus 217 S--------~FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 217 S--------DFVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred h--------hhhhhh-----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 1 111111 12223334455555656678999999986531 123333333332 22
Q ss_pred C--CCCEEEE-ecCchHHHHHHhh-cCCCCceecCCCChhhHHHHHHHhh
Q 036466 183 A--EGSKILV-TTRSNKVALIMAT-MRGTTGYNLQELPYKDCLSLFMKCA 228 (727)
Q Consensus 183 ~--~~~~ili-Tsr~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 228 (727)
. .|..|+. |.|...+...+.. -+.++.+.++.-+...-.++++-.+
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 2 2333332 4555444343332 2334567776666666667776433
No 330
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.016 Score=55.91 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchh-hHh----------cC---CceEEEEecC----CC--C-----------------
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQR-VEE----------HF---ELKIWICVSE----DS--G----------------- 119 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~-~~~----------~f---~~~~~~~~~~----~~--~----------------- 119 (727)
..++|.|+.|+|||||++.+.--.. .++ .. ..+.||.-.. .+ +
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987211 000 01 2345654210 00 0
Q ss_pred -----HHHHHHHHHHHhcCCC-----CCCCChHH-HHHHHHHHhCCceEEEEEcCCCCC-Chhh---HHHHHHhhcCCCC
Q 036466 120 -----KRQIMTKIINSVTGGN-----HGNLDPDR-LQKVLRDSLNGKRYLLVMDDVWNE-DPRA---WGELKSLLLGGAE 184 (727)
Q Consensus 120 -----~~~~~~~ll~~l~~~~-----~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~~-~~~~---~~~~~~~l~~~~~ 184 (727)
..+...+.+++.+..+ ....+-.+ ..-.+.++|..++=|+++|+-... |... .-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1234445555554322 22233333 345667788899999999995332 3333 33344444443
Q ss_pred CCEEEEecCchHHHH
Q 036466 185 GSKILVTTRSNKVAL 199 (727)
Q Consensus 185 ~~~iliTsr~~~~~~ 199 (727)
|.-|+++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998865443
No 331
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.45 E-value=0.00022 Score=60.20 Aligned_cols=102 Identities=22% Similarity=0.313 Sum_probs=59.1
Q ss_pred cceEEEecCCCcccccc---ccCCCCcCcEEeccCCccccccCcccc-CCCCCCEeecCCCCCCcccChhhcccccCcee
Q 036466 431 SLRVLVLTNSAIEVLPR---KMGNLKQLRHLDLSGNRKIKKLPNSIC-ELQSLQTLNLGDCLELEELPKDIRYLVSLRMF 506 (727)
Q Consensus 431 ~L~~L~l~~~~~~~l~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 506 (727)
-+..++|++|.+-.+++ .+.+..+|...++++|. ...+|+.+. ..+.+++|++.. +.+..+|.++..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 44556666665543333 34455566666777666 334444443 344667777765 4455666667777777777
Q ss_pred EecccccccccccCCCCCCCcEEecccc
Q 036466 507 VVTTKQKSLLESGIGCLSSLRFLMISNC 534 (727)
Q Consensus 507 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 534 (727)
++..|.+...|..+..+.++-.|+..++
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCC
Confidence 7777766655555555555555555443
No 332
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.44 E-value=0.03 Score=54.26 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
...+.|.|++|+||||++.+++.. ...+-..++|++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG--FLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 459999999999999999888774 222224567777433 455555555
No 333
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0017 Score=61.62 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=55.3
Q ss_pred CCcCcEEeccCCccccccCccccCCCCCCEeecCCC--CCCcccChhhcccccCceeEeccccccccc--ccCCCCCCCc
Q 036466 452 LKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDC--LELEELPKDIRYLVSLRMFVVTTKQKSLLE--SGIGCLSSLR 527 (727)
Q Consensus 452 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~ 527 (727)
+..|+.|++.++.+++ + ..+-.+++|++|.++.| .....++..+..+++|++|++++|.+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444445554444221 1 12344566777777766 444455555556677777777777665311 1234455666
Q ss_pred EEeccccCCch---hhhhhccCCCCcCeeeccc
Q 036466 528 FLMISNCGNLE---YLFEDIDQLSVLRSLVVNA 557 (727)
Q Consensus 528 ~L~l~~~~~~~---~l~~~l~~l~~L~~L~l~~ 557 (727)
.|++++|.... +--..+.-+++|++|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77777764332 1123344566777776443
No 334
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.43 E-value=0.017 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++|+|+.|.||||+.+.+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999853
No 335
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.42 E-value=0.016 Score=57.45 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
.-+++.|+|++|+|||+++.+++.. ....-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4579999999999999999998874 222335678888764
No 336
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.41 E-value=0.042 Score=56.32 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
+.+++.++|+.|+||||-..+++........-..+..++...+. +..+-++..++-++.+-..-.+..++...+...-.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 36899999999999997766777643323334556677765544 33344444555554443344566666666655422
Q ss_pred CceEEEEEcCCCCC--ChhhHHHHHHhhcCC
Q 036466 154 GKRYLLVMDDVWNE--DPRAWGELKSLLLGG 182 (727)
Q Consensus 154 ~~~~LlvlDd~~~~--~~~~~~~~~~~l~~~ 182 (727)
.=+|.+|-+... +......+..++...
T Consensus 282 --~d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 282 --CDVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred --CCEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 246667887554 334455555555543
No 337
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.40 E-value=0.027 Score=51.90 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc---hhhHh---cC--CceEEEEecCCCCHHHHHHHHHHHhcCCCC------CCCCh
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND---QRVEE---HF--ELKIWICVSEDSGKRQIMTKIINSVTGGNH------GNLDP 141 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~---~~~~~---~f--~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~ 141 (727)
-.+++|.|+.|+|||||.+.+..+ ..+.+ .| ..+.|+. + .+.+..++.... ...+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 358999999999999999988531 00000 01 0122321 1 345555542211 11222
Q ss_pred H-HHHHHHHHHhCCc--eEEEEEcCCCC-CChhhHHHHHHhhcCC-CCCCEEEEecCchHHH
Q 036466 142 D-RLQKVLRDSLNGK--RYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVA 198 (727)
Q Consensus 142 ~-~~~~~l~~~l~~~--~~LlvlDd~~~-~~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~ 198 (727)
. ...-.+.+.+..+ +=++++|+--. .+......+...+... ..|..||++|.+....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2 2233444555567 78888999744 2444444444444331 2466788888877654
No 338
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.40 E-value=0.0055 Score=54.52 Aligned_cols=36 Identities=31% Similarity=0.238 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC 113 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~ 113 (727)
..+|.|+|.+|+||||||+++.. +.......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35899999999999999999998 4444444555655
No 339
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.37 E-value=0.014 Score=63.57 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=75.7
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh-------hHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR-------VEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-------~~~~f~~~~~~~~~~~~~~~ 121 (727)
..++|....++++.+.+.... .....|.|+|++|+||+++|+.+.+... .+.. ...+-++|.... .
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~-~pfv~inCaal~--e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKS-HPFVAVNCGAIA--E 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCC-CCeEEeecccCC--h
Confidence 458999999999998876543 2234799999999999999999987410 1111 122345555432 2
Q ss_pred HHHHHHHHHhcCCCCCCCChH---HHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCE
Q 036466 122 QIMTKIINSVTGGNHGNLDPD---RLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSK 187 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~---~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~ 187 (727)
..+.. .+++......... .....+.. ...-.|+||++++........+...+.... ...|
T Consensus 292 ~lles---eLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvR 365 (538)
T PRK15424 292 SLLEA---ELFGYEEGAFTGSRRGGRAGLFEI---AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVR 365 (538)
T ss_pred hhHHH---HhcCCccccccCccccccCCchhc---cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceE
Confidence 22222 2222111100000 00001111 234468999999888777777777775421 1347
Q ss_pred EEEecCc
Q 036466 188 ILVTTRS 194 (727)
Q Consensus 188 iliTsr~ 194 (727)
||.+|..
T Consensus 366 iIaat~~ 372 (538)
T PRK15424 366 VISATHC 372 (538)
T ss_pred EEEecCC
Confidence 8877754
No 340
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.37 E-value=0.025 Score=57.86 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=40.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhH----hcCCceEEEEecCCCCHHHHHHHHHHHhc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVE----EHFELKIWICVSEDSGKRQIMTKIINSVT 132 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~ll~~l~ 132 (727)
.-+++-|+|++|+|||+|+.+++-..... +.-..++|++..+.+.+..+.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 45789999999999999999987643321 1224678999988777766544 555553
No 341
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0034 Score=54.81 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.--++|+|++|+||||++.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999984
No 342
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.048 Score=51.54 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcC--CCCCCEEEEecCchHHHHHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLG--GAEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~--~~~~~~iliTsr~~~~~~~~ 201 (727)
-.|.+++.-++=+||+|+.-.. |...-..+...+.. ...+--+|+.|.+-.+...+
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHH
Confidence 4566777888999999997432 32223334444432 23455678888876655443
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.022 Score=56.63 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH-HHHHHHHHHHhcCCC---CCCCChHH-HHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK-RQIMTKIINSVTGGN---HGNLDPDR-LQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~---~~~~~~~~-~~~~l 148 (727)
.+.++++++|++|+||||++.+++.. ....-..+..+++...... .+-+..+.+..+.+. ....++.. ....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45689999999999999999999974 3333335666765543222 233344455543211 11122322 33444
Q ss_pred HHHhCCceEEEEEcCCCCC
Q 036466 149 RDSLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 149 ~~~l~~~~~LlvlDd~~~~ 167 (727)
........=++++|-....
T Consensus 148 ~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHCCCCEEEEeCCCCC
Confidence 4444444557888987543
No 344
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.34 E-value=0.025 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
++++|+|+.|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999999875
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=96.34 E-value=0.044 Score=57.98 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCCH-HHHHHHHHHHhcCCCC---CCCChHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSGK-RQIMTKIINSVTGGNH---GNLDPDRLQKVL 148 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~---~~~~~~~~~~~l 148 (727)
..+.++.++|++|+||||++.+++.. .... -..++.+++...... .+-++.+....+.+-. ...++.++....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 34789999999999999999999874 3333 234555665433222 2334444555432211 123444444333
Q ss_pred HHHhCCceE-EEEEcCCCC
Q 036466 149 RDSLNGKRY-LLVMDDVWN 166 (727)
Q Consensus 149 ~~~l~~~~~-LlvlDd~~~ 166 (727)
.+..+.+.+ ++|+|-...
T Consensus 176 ~~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHHhcCCCEEEEeCCCC
Confidence 333233333 777777643
No 346
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.33 E-value=0.011 Score=58.01 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCC-ceEEEEecCCC-CHHHHHHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFE-LKIWICVSEDS-GKRQIMTKIIN 129 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~~~~~~~~~-~~~~~~~~ll~ 129 (727)
..++|.|.+|+|||||+.++++ ..+.+|. ..+|+-+++.. ...++..++..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 3689999999999999999998 4444453 44566665543 33445555443
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.33 E-value=0.0069 Score=57.97 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEE
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWIC 113 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~ 113 (727)
+..++.+.+.+.. .+..+|+|+|+||+|||||+.++......+++--.++-|+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 4445555565532 4567999999999999999999998554444333334443
No 348
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.32 E-value=0.013 Score=53.69 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=43.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcC--CCCCC-CChHHHHHHHHHHhCC
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTG--GNHGN-LDPDRLQKVLRDSLNG 154 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~~-~~~~~~~~~l~~~l~~ 154 (727)
.+.|.|.+|+|||++|.+++... . ..++|+.... ....+..+.+.+.... ..+.. ..+..+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 58999999999999999887631 1 1234544333 3344555665444321 11111 1112334444443332
Q ss_pred ceEEEEEcCC
Q 036466 155 KRYLLVMDDV 164 (727)
Q Consensus 155 ~~~LlvlDd~ 164 (727)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888987
No 349
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0045 Score=53.10 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=43.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
+-|.|+|.||+||||++.+++... ..-|++++.......+....=.+. ...-.+.+.+.+.+...+.+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcCC
Confidence 469999999999999999888521 123666654333323222222221 1123456667777777766654
Q ss_pred EEE
Q 036466 157 YLL 159 (727)
Q Consensus 157 ~Ll 159 (727)
+++
T Consensus 78 ~IV 80 (176)
T KOG3347|consen 78 NIV 80 (176)
T ss_pred cEE
Confidence 444
No 350
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.31 E-value=0.016 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++.+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 351
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.31 E-value=0.01 Score=61.27 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.5
Q ss_pred CCceeecchhHHHHHHHHhcC-------CC-CCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 48 PSDIIGRYEDGEKIIELLTQT-------SD-GESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~-------~~-~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.++..+.+.-++... .. .+...++.+.++|++|+|||++|+.++.
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999988776531 00 1112357899999999999999999987
No 352
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.30 E-value=0.016 Score=61.05 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCceeecchhHHHHHHHHhcC----C---C---CCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 48 PSDIIGRYEDGEKIIELLTQT----S---D---GESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~----~---~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.+...+.+..++... . . +..-....+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999887665211 0 0 0011235799999999999999999986
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.056 Score=49.41 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+.+.++|.||+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3688999999999999999998
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.29 E-value=0.04 Score=49.08 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhCCc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDP-DRLQKVLRDSLNGK 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~~~~~l~~~l~~~ 155 (727)
..++|.|+.|+|||||++.++... ....+.+|++-. ..+... ...+. +...-.+.+.+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-------------~~i~~~--~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-------------VKIGYF--EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-------------EEEEEE--ccCCHHHHHHHHHHHHHhcC
Confidence 489999999999999999888632 222333333210 000000 00121 12223445566667
Q ss_pred eEEEEEcCCCC-CChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 156 RYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 156 ~~LlvlDd~~~-~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
+=++++|+-.. .|......+...+... +..++++|.+.+..
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 78999999743 3444455555555433 24577777776544
No 355
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.29 E-value=0.01 Score=67.52 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=76.2
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
...++|....+.++.+....... ....|.|+|++|+||+++|+.+.+... ..-...+.++|.... ...+..++
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHh
Confidence 35689999999888888766542 233589999999999999999987321 111222345665542 12222222
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 128 INSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
+ +....... ......+. ....-.|+||+++.........+...+.... -..+||.||...
T Consensus 397 f----g~~~~~~~-~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 397 L----GSDRTDSE-NGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred c----CCCCcCcc-CCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 2 21100000 00000010 1234568999999988777777777775421 135677776643
No 356
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.051 Score=52.27 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=40.4
Q ss_pred CceeecchhHHHHHHHHhcCCC-------CCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD-------GESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++-|-+.++++|.+.+.-+.+ -.-.+++-|.+||.+|.|||-||++|++.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4566899999999998865532 11235678999999999999999999993
No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.02 Score=52.92 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc--CCCC---CC--------CChHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT--GGNH---GN--------LDPDR 143 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~---~~--------~~~~~ 143 (727)
..++|.|+.|+|||||++.++... ....+.++++-....... ..+...+. .+.. .. .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999887631 223343443211110000 11111111 0000 01 12122
Q ss_pred -HHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCC-CCCCEEEEecCchHHHH
Q 036466 144 -LQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG-AEGSKILVTTRSNKVAL 199 (727)
Q Consensus 144 -~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~~ 199 (727)
..-.+.+.+..++=++++|+-... |......+...+... ..|..+|++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 223455666778889999997443 443444444444331 23567888888776544
No 358
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.27 E-value=0.022 Score=53.95 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHH---HHHHH-
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQK---VLRDS- 151 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~---~l~~~- 151 (727)
.++++|.|+.|.||||+.+.+....... +.. .++.+.. ..-.+...++..+...+........... .+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~~G--~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-QIG--CFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-HcC--CCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999999887532111 111 1221111 0012222233222221111111111111 11111
Q ss_pred -hCCceEEEEEcCCCCCC-hhhH----HHHHHhhcCCCCCCEEEEecCchHHHHHHh
Q 036466 152 -LNGKRYLLVMDDVWNED-PRAW----GELKSLLLGGAEGSKILVTTRSNKVALIMA 202 (727)
Q Consensus 152 -l~~~~~LlvlDd~~~~~-~~~~----~~~~~~l~~~~~~~~iliTsr~~~~~~~~~ 202 (727)
+..++-++++|+..... ..+. ..+...+.. .+..+|++|...+......
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23467899999985532 2221 223333433 3788999999988776554
No 359
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.27 E-value=0.0091 Score=61.68 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=69.1
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+++.+..+..++... +-+.+.|++|+|||+||+.++.. .... .+.+.+.......++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~~---~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGLP---FVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCCC---eEEEecCCCCCHHHhcCchh
Confidence 34889998888877777552 35899999999999999999983 3333 24556666666666655544
Q ss_pred HHhcC---C--CCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 129 NSVTG---G--NHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 129 ~~l~~---~--~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
..... . ....... ....+.++.+|+++.........+...+..
T Consensus 91 ~~~~~~~~~~~~~~~gpl----------~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 91 YAALLLEPGEFRFVPGPL----------FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred HhhhhccCCeEEEecCCc----------ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 44311 0 0000000 001115899999998876666666666654
No 360
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.27 E-value=0.094 Score=55.32 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHhcCCC-CCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 54 RYEDGEKIIELLTQTSD-GESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~-~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+-+.++..||..... ...-+.+++.|+|++|+||||.++.++.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 45667788888871110 1113567999999999999999988776
No 361
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.27 E-value=0.025 Score=57.90 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=39.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhH---h-cCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVE---E-HFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
.-.++.|+|++|+|||+++..++...... + .-..++|++..+.+..+.+ .++++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~ 181 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERF 181 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHc
Confidence 45789999999999999998888542221 1 1236889999887776654 4555555
No 362
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.27 E-value=0.029 Score=55.90 Aligned_cols=129 Identities=23% Similarity=0.339 Sum_probs=68.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc-hhhHhcCCceE-EEE---ecCCC-----CHH--
Q 036466 54 RYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND-QRVEEHFELKI-WIC---VSEDS-----GKR-- 121 (727)
Q Consensus 54 r~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~-~~~---~~~~~-----~~~-- 121 (727)
|..+-.--.++|.. +....|.+.|.+|+|||.||-+..-. ...++.|..++ ... +++.. ..+
T Consensus 229 rn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 229 RNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 44444444455555 45789999999999999999665543 23345565543 222 11111 111
Q ss_pred --HHHHHHHHHh---cCCCCCCCChHHHHHHH-H---------HHhCCc---eEEEEEcCCCCCChhhHHHHHHhhcCCC
Q 036466 122 --QIMTKIINSV---TGGNHGNLDPDRLQKVL-R---------DSLNGK---RYLLVMDDVWNEDPRAWGELKSLLLGGA 183 (727)
Q Consensus 122 --~~~~~ll~~l---~~~~~~~~~~~~~~~~l-~---------~~l~~~---~~LlvlDd~~~~~~~~~~~~~~~l~~~~ 183 (727)
-..+.+...+ ....... ....+.+ . .+.+++ ..++|+|+++.....+..- .+-+.+
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT---iltR~G 376 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT---ILTRAG 376 (436)
T ss_pred ccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH---HHHhcc
Confidence 1223333322 2221111 2222222 1 122333 4699999998877644433 344567
Q ss_pred CCCEEEEecCc
Q 036466 184 EGSKILVTTRS 194 (727)
Q Consensus 184 ~~~~iliTsr~ 194 (727)
+|+|||.|--.
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 89999998753
No 363
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.022 Score=57.37 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...|-|..||+||.|||..|++++.+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhh
Confidence 46789999999999999999999974
No 364
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.024 Score=60.50 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=49.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
...+++|+|++|+||||++.+++.....+.....+.+++..... ...+.+....+.++..-....+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 34799999999999999999998742222222345566553322 222333333333332222223344454444443 2
Q ss_pred CceEEEEEcCCCC
Q 036466 154 GKRYLLVMDDVWN 166 (727)
Q Consensus 154 ~~~~LlvlDd~~~ 166 (727)
..=+|++|....
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 345888898854
No 365
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.26 E-value=0.02 Score=53.27 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc--CCC------------CCCCCh-
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT--GGN------------HGNLDP- 141 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~------------~~~~~~- 141 (727)
.+++|.|+.|+|||||++.++-.. ....+.++++-. ........+-+.+. .+. ....+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 489999999999999999988631 122233332211 11111111111111 000 111121
Q ss_pred HHHHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 142 DRLQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 142 ~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
+...-.+.+.+..++=++++|+.... |......+...+.....+..||++|.+....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 22233445566677889999997443 4434444444443322356788888877654
No 366
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.013 Score=59.34 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-----GNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~~~~~~l~ 149 (727)
+-.++.|-|.||||||||.-+++.+ ..... .++||+-.+ +..++ +--+..++.... .+.+.+...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3468999999999999999999984 44333 778876533 22222 222344432111 1233444444443
Q ss_pred HHhCCceEEEEEcCCCC
Q 036466 150 DSLNGKRYLLVMDDVWN 166 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~ 166 (727)
+ .++-++|+|.++.
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 5889999999854
No 367
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.25 E-value=0.00059 Score=57.69 Aligned_cols=92 Identities=23% Similarity=0.404 Sum_probs=62.4
Q ss_pred hhhcCCCcceEEEecCCCccccccccC-CCCcCcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhccccc
Q 036466 424 SCISKSKSLRVLVLTNSAIEVLPRKMG-NLKQLRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVS 502 (727)
Q Consensus 424 ~~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 502 (727)
..+.+...|...+|++|.+..+|+.|. +++-++.|++.+|. +..+|..+..++.|+.|+++.|. ....|..+..+.+
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIK 124 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHh
Confidence 345556677777777777777776653 34567777777766 66677777777888888887644 4445556656777
Q ss_pred CceeEeccccccccc
Q 036466 503 LRMFVVTTKQKSLLE 517 (727)
Q Consensus 503 L~~L~l~~~~~~~~~ 517 (727)
|..|+..+|....++
T Consensus 125 l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 125 LDMLDSPENARAEID 139 (177)
T ss_pred HHHhcCCCCccccCc
Confidence 777777777666444
No 368
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.076 Score=54.86 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=79.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEE-EecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWI-CVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
|--.++||||.|||+++.++++. .++-+|. .+....+..+ ++.++..- ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~t----------------------~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLAT----------------------PN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHhC----------------------CC
Confidence 56889999999999999988873 2333332 2222222222 33333332 35
Q ss_pred eEEEEEcCCCCCC-------h-----------hhHHHHHHhhcC--CCC-CCEEEE-ecCchHHHH-HH-hhcCCCCcee
Q 036466 156 RYLLVMDDVWNED-------P-----------RAWGELKSLLLG--GAE-GSKILV-TTRSNKVAL-IM-ATMRGTTGYN 211 (727)
Q Consensus 156 ~~LlvlDd~~~~~-------~-----------~~~~~~~~~l~~--~~~-~~~ili-Tsr~~~~~~-~~-~~~~~~~~~~ 211 (727)
+-+|||.|+|..- . ..+..+...+.. ... +-|||| ||-..+-.. ++ ..-+-+..+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 6788888886530 0 112223333322 112 235555 554332221 11 1112235688
Q ss_pred cCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 036466 212 LQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIPLAVRTVGSLL 264 (727)
Q Consensus 212 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 264 (727)
+.-=+.+....|+.++..... . ..++.+|.+...+.-+.=..++..+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888888888763322 1 2344555555555544444444444
No 369
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.23 E-value=0.063 Score=50.96 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCceEEEEEcCC-CCCChhhHHHHHHhhcCC--CCCCEEEEecCchHHHHHH
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDV-WNEDPRAWGELKSLLLGG--AEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~-~~~~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~~~~ 201 (727)
+..-.+.+++-..|-+|+-|+- ...|...-..+...+... ..|..||+.|.++.++..+
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 4456677788888989999984 223443444444444432 3477799999998887643
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.23 E-value=0.02 Score=52.32 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS--GKRQIMTKIINSVTGGNHGNLDPD-RLQKVLRDSLN 153 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~~~~-~~~~~l~~~l~ 153 (727)
..++|.|+.|+|||||.+.++-. .....+.++++-.... +..+... +..... ...+.. ...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~--~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMV--YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEE--EecCHHHHHHHHHHHHHh
Confidence 48999999999999999988863 2233444444321111 1111111 111100 112222 23344555666
Q ss_pred CceEEEEEcCCCC-CChhhHHHHHHhhcCC-CCCCEEEEecCchHHH
Q 036466 154 GKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVA 198 (727)
Q Consensus 154 ~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~ 198 (727)
.++=++++|+-.. .|......+...+... ..+..+|++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 7788999999744 3444444555555332 2366788888876543
No 371
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.22 E-value=0.057 Score=53.15 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
-.++.|.|.+|+|||+++.+++.+...+ .-..++|++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC
Confidence 4689999999999999999998753222 134567777544
No 372
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.02 Score=56.37 Aligned_cols=89 Identities=18% Similarity=0.064 Sum_probs=55.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHH-hcCCC-CCCCChHHHHHHHHH-
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINS-VTGGN-HGNLDPDRLQKVLRD- 150 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~-~~~~~~~~~~~~l~~- 150 (727)
+.-+++=|+|+.|+||||+|.+++. ..+..-...+|++.-+..++..+.. +... +..-. ....+.++..+.+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4568999999999999999999988 4454445788999888777765433 3333 21111 122333333333333
Q ss_pred --HhCCceEEEEEcCCC
Q 036466 151 --SLNGKRYLLVMDDVW 165 (727)
Q Consensus 151 --~l~~~~~LlvlDd~~ 165 (727)
....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 333334688899883
No 373
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.21 E-value=0.007 Score=55.06 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=49.2
Q ss_pred CcEEeccCCccccccCccccCCCCCCEeecCCCCCCcccChhhcccccCceeEecccccccc--cccCCCCCCCcEEecc
Q 036466 455 LRHLDLSGNRKIKKLPNSICELQSLQTLNLGDCLELEELPKDIRYLVSLRMFVVTTKQKSLL--ESGIGCLSSLRFLMIS 532 (727)
Q Consensus 455 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~ 532 (727)
...++|+.|. +..++. +..+++|.+|.++.|.+...-|..-..+++|..|.+.+|.+..+ -..+..|++|++|.+-
T Consensus 44 ~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445555544 222222 44555566666655444443343334445566666666555521 1234555666666666
Q ss_pred ccCCchh---hhhhccCCCCcCeeeccc
Q 036466 533 NCGNLEY---LFEDIDQLSVLRSLVVNA 557 (727)
Q Consensus 533 ~~~~~~~---l~~~l~~l~~L~~L~l~~ 557 (727)
+|+.... ---.+..+|+|+.|+..+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 5532211 112344566677776654
No 374
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.034 Score=51.32 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHH-HHHHHHHhc--CCCCC--C-------CChHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQI-MTKIINSVT--GGNHG--N-------LDPDR 143 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~ll~~l~--~~~~~--~-------~~~~~ 143 (727)
-..++|.|+.|+|||||.+.++-- .....+.+++.-.. .... .......+. ..... . .+..+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~---~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVD---LRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEE---hhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 348999999999999999998863 12233434332111 1100 001111111 00000 0 11111
Q ss_pred -HHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCCCCCCEEEEecCchHHHH
Q 036466 144 -LQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 199 (727)
Q Consensus 144 -~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~ 199 (727)
..-.+.+.+..++=++++|+-.. .|......+...+.....+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 22234556667788999999743 244344444444443223466888888765543
No 375
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.17 E-value=0.027 Score=57.65 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHh----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEE----HFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
..+++.|+|++|+|||+++.+++....... .-..++|++..+.++...+ .+++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHc
Confidence 457899999999999999999987532211 1136889998877766654 4445544
No 376
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.16 E-value=0.017 Score=54.52 Aligned_cols=22 Identities=50% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+|+|.|++|+||||+|+++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 377
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.16 E-value=0.032 Score=60.82 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHH
Q 036466 58 GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKI 127 (727)
Q Consensus 58 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 127 (727)
+..|.+.|...- ..-.++.|.|++|+|||||+.+++.. ...+-..++|+...+ +..++...+
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH
Confidence 444666664422 34579999999999999999999984 333445677877655 345554443
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.16 E-value=0.049 Score=57.58 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCCCC---CCCChHHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGGNH---GNLDPDRLQKVLRD 150 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~---~~~~~~~~~~~l~~ 150 (727)
++.++.++|++|+||||++.+++.....+ .-..+..+++..... ..+-+..+....+.+.. ...++.++.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 47899999999999999999998742211 222455566544322 22334444454432211 12334344332322
Q ss_pred HhCCceE-EEEEcCCCC
Q 036466 151 SLNGKRY-LLVMDDVWN 166 (727)
Q Consensus 151 ~l~~~~~-LlvlDd~~~ 166 (727)
....+.+ ++|+|-...
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 2323333 788888754
No 379
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.048 Score=54.78 Aligned_cols=51 Identities=29% Similarity=0.285 Sum_probs=36.7
Q ss_pred CceeecchhHHHHHHHHhcCCC------CCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 49 SDIIGRYEDGEKIIELLTQTSD------GESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++.|.++..+-|.+++.-+.. +-..+=+-|+++|++|.|||-||++|+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 4567777777777776543311 11234578999999999999999999973
No 380
>PTZ00035 Rad51 protein; Provisional
Probab=96.15 E-value=0.04 Score=56.59 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhH----hcCCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVE----EHFELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
..|.+.|... =..-.++.|+|++|+|||+++..++...+.. +.-..++|++....+..+. +.+++..+
T Consensus 105 ~~LD~lLgGG----i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~ 176 (337)
T PTZ00035 105 TQLDKLLGGG----IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERF 176 (337)
T ss_pred HHHHHHhCCC----CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHh
Confidence 3455555432 1345799999999999999999887643211 1223567998876655554 44445544
No 381
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.15 E-value=0.022 Score=62.36 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=74.2
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+...+..+.+.+.... .....|.|+|.+|+|||++|+.+..... ..-...+.++|... + .+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~i~i~c~~~-~-~~~~~~-- 207 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHSP--RAKAPFIALNMAAI-P-KDLIES-- 207 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcCC--CCCCCeEeeeCCCC-C-HHHHHH--
Confidence 458999999888888776543 2345699999999999999998887421 11122234555443 1 122222
Q ss_pred HHhcCCCCCCCC-hHHH-HHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 129 NSVTGGNHGNLD-PDRL-QKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 129 ~~l~~~~~~~~~-~~~~-~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
.+.+....... .... ...+. ....-.++||+++.........+...+.... ...+||+||...
T Consensus 208 -~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 208 -ELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred -HhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 22221110000 0000 00011 1122357889999888777777777765421 134888888653
No 382
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.15 E-value=0.026 Score=57.51 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
+.|.+.|...- ..-.++.|+|++|+|||+++..++........ -..++|++..+.+.... +.+++..+
T Consensus 83 ~~lD~ll~gGi----~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 83 KELDKLLGGGI----ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred HHHHHHhcCCC----CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 34555554321 34679999999999999999988863222111 13568998877666654 44445444
No 383
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.14 E-value=0.0036 Score=54.62 Aligned_cols=21 Identities=52% Similarity=0.632 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 036466 79 IPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~ 99 (727)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999984
No 384
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.055 Score=58.32 Aligned_cols=182 Identities=18% Similarity=0.114 Sum_probs=101.4
Q ss_pred CceeecchhHHHHHHHHhcCC-------CCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTS-------DGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKR 121 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 121 (727)
..+-|-...+..+.....-+. ......++-+.++|++|+|||-++++|++.. ..+ .+.++. .
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~--~a~---~~~i~~------p 252 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY--GAF---LFLING------P 252 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh--Cce---eEeccc------H
Confidence 355667777777766653221 1223467899999999999999999999842 211 111111 1
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc-eEEEEEcCCCCCCh----------hhHHHHHHhhcCCCC--CCEE
Q 036466 122 QIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK-RYLLVMDDVWNEDP----------RAWGELKSLLLGGAE--GSKI 188 (727)
Q Consensus 122 ~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~----------~~~~~~~~~l~~~~~--~~~i 188 (727)
+++... .+.....+...+.+..+.+ +.++.+|+++..-. .....+..++....+ +.-|
T Consensus 253 ----eli~k~-----~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv 323 (693)
T KOG0730|consen 253 ----ELISKF-----PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIV 323 (693)
T ss_pred ----HHHHhc-----ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEE
Confidence 222332 2334455666777777777 99999999865321 112223333333332 3333
Q ss_pred EEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 189 LVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 189 liTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
|-+|+.+ .+......-+.++.+.+.-.+..+..++++......+... ......++..+.|.-
T Consensus 324 l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~----~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLS----DVDLEDIAVSTHGYV 386 (693)
T ss_pred EEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcc----hhhHHHHHHHccchh
Confidence 4455543 2322333213346678887887888888877663333221 233455666666654
No 385
>PRK05439 pantothenate kinase; Provisional
Probab=96.11 E-value=0.042 Score=55.23 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc--CCceEEEEecCCCCHHHHHH--HHHHHhcCCCCCCCChHHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH--FELKIWICVSEDSGKRQIMT--KIINSVTGGNHGNLDPDRLQKVLR 149 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~~~~~~~l~ 149 (727)
..+.+|+|.|.+|+||||+|+.+.. ..... ...+.-++........+.+. .++..- ..+...+.+.+.+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k--g~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK--GFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhhhccccC--CCcccccHHHHHHHHH
Confidence 4678999999999999999998887 33322 12233343333222222221 111111 1233456666666666
Q ss_pred HHhCCce
Q 036466 150 DSLNGKR 156 (727)
Q Consensus 150 ~~l~~~~ 156 (727)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6655554
No 386
>PRK07667 uridine kinase; Provisional
Probab=96.11 E-value=0.014 Score=55.06 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.+.+++.... ....+|+|.|.+|+||||+|+.+...
T Consensus 4 ~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 4 NELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44555554432 33479999999999999999999873
No 387
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.10 E-value=0.0096 Score=69.36 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=95.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcC---CceEEEEecCCC----CHHH-HHHHHHHHhcCCCCCCCChHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHF---ELKIWICVSEDS----GKRQ-IMTKIINSVTGGNHGNLDPDRLQKV 147 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~~~~~~~~~----~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~ 147 (727)
..-+.|.|.+|+||||....++... ..+.+ +..+++.+.... ...+ .+...+....... .........
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~---~~~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ---GIAKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc---CCcchhhHH
Confidence 3479999999999999998888631 12221 223344333111 1111 2222222221111 111122222
Q ss_pred HHHHhCCceEEEEEcCCCCCChhhHHHH---HHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCceecCCCChhhHHHHH
Q 036466 148 LRDSLNGKRYLLVMDDVWNEDPRAWGEL---KSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYNLQELPYKDCLSLF 224 (727)
Q Consensus 148 l~~~l~~~~~LlvlDd~~~~~~~~~~~~---~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 224 (727)
..+.++..++++++|+++.......... ...+.+.-+.+.+|+|+|.......... ...+++..+.++......
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~---f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKG---FAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhh---hhhccchhhhHHHHHHHH
Confidence 3677788999999999987643222222 2223334568999999988765544333 366777777777655443
Q ss_pred H-----HhhccC-CCCCCh--hHH----HHHHHHHHHcCCchHHHHHHHhhhc
Q 036466 225 M-----KCAFKV-GQEKHP--NLV----KIGEKIVEKCRGIPLAVRTVGSLLY 265 (727)
Q Consensus 225 ~-----~~~~~~-~~~~~~--~~~----~~~~~i~~~~~g~Plal~~~a~~l~ 265 (727)
. ...... +..... ... ....+-.+.....|+.+.+.|....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 3 111111 111111 011 1112333444888999999885553
No 388
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.09 E-value=0.05 Score=49.34 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=65.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceE---EEEecCCCCHHHHHHHHHHHh---cCC-CCCCCCh-------H
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKI---WICVSEDSGKRQIMTKIINSV---TGG-NHGNLDP-------D 142 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---~~~~~~~~~~~~~~~~ll~~l---~~~-~~~~~~~-------~ 142 (727)
.+|-|++..|.||||.|-.++. +..++--.++ |+.-....+....+..+--.+ +.. .+...+. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4788999999999999988887 4444433343 433332234444444431111 010 1111111 1
Q ss_pred HHHHHHHHHhCC-ceEEEEEcCCCCC---ChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 143 RLQKVLRDSLNG-KRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 143 ~~~~~l~~~l~~-~~~LlvlDd~~~~---~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
...+...+.+.. +-=++|||++-.. .....+.+...+....++.-||+|-|...-
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 122233333333 3459999998321 223445677777777778899999998643
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.08 E-value=0.025 Score=58.79 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=30.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
+-.++.|.|.+|+|||||+.+++.. .......++|++..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 3469999999999999999999874 333334677887643
No 390
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.08 E-value=0.036 Score=46.91 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred Cceeecchh----HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchh
Q 036466 49 SDIIGRYED----GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQR 101 (727)
Q Consensus 49 ~~~vGr~~~----~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~ 101 (727)
+.++|-.-. ++.|.+++... .+.++-|+.++|++|+|||.+++.+++...
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 457775544 44455555442 356788999999999999999999988633
No 391
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.08 E-value=0.06 Score=49.31 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhh-Hhc--CC---ceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChH-HHHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRV-EEH--FE---LKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPD-RLQKVLR 149 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~--f~---~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-~~~~~l~ 149 (727)
..++|.|+.|+|||||++.++-.... .+. ++ .+.|+.-........+.+.+.. ......+.. ...-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHHHH
Confidence 48999999999999999998873211 111 11 1223321111111112222111 011222222 2334455
Q ss_pred HHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 150 DSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
+.+-.++=++++|+-.. .|......+...+... +..+|++|.+...
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSL 150 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhH
Confidence 56667788889999643 2433444444444432 3567888877654
No 392
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.07 E-value=0.013 Score=60.63 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=38.7
Q ss_pred CCceeecchhHHHHHHHHhcC--------CCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 48 PSDIIGRYEDGEKIIELLTQT--------SDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~--------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+++|.++..+.+..++... ....+-.++.+.++|++|+|||++|+.++.
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999998887531 001111246899999999999999999987
No 393
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.07 E-value=0.074 Score=52.50 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=61.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC-
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN- 153 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~- 153 (727)
...+++.|++|+||||+++.++.. ....-..+.++++.... ...+-+......++.+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 469999999999999999998874 33222345566654332 11222233333333222222455555555544322
Q ss_pred CceEEEEEcCCCCC--ChhhHHHHHHhhcCCCCCCEEEE
Q 036466 154 GKRYLLVMDDVWNE--DPRAWGELKSLLLGGAEGSKILV 190 (727)
Q Consensus 154 ~~~~LlvlDd~~~~--~~~~~~~~~~~l~~~~~~~~ili 190 (727)
.+.=++++|..... +.....++...+....+.-.++|
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 24468889998655 23345555554443333333444
No 394
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.07 E-value=0.017 Score=56.24 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCCHHHHHHHHHHHhcCC---------------CCC-
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSGKRQIMTKIINSVTGG---------------NHG- 137 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------------~~~- 137 (727)
...+++|.|++|+|||+++.+++.. .... -..++|++.... ..++.+.+- .++-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4569999999999999999998874 2222 356778887553 344444332 32200 000
Q ss_pred ----CCChHHHHHHHHHHhCC-ceEEEEEcCC
Q 036466 138 ----NLDPDRLQKVLRDSLNG-KRYLLVMDDV 164 (727)
Q Consensus 138 ----~~~~~~~~~~l~~~l~~-~~~LlvlDd~ 164 (727)
..+.+++...+.+..+. +.-.+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34556666666665544 4467778876
No 395
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0087 Score=58.08 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.+|...+... .....+|+|+|.||+|||||+.++......+++--.++=|+-+..++--.++.+-.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 3455555443 256779999999999999999999986555555445555555554444444444443
No 396
>PF13479 AAA_24: AAA domain
Probab=96.05 E-value=0.022 Score=54.66 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED 117 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~ 117 (727)
.-.++|+|++|+||||+|..+ +..+++++..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 346899999999999999765 45667776554
No 397
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.05 E-value=0.042 Score=60.04 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|......++.+.+.... .....+.|.|.+|+||+++|+.+.... .......+-++|... ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh
Confidence 358898888888877775532 223468899999999999999887632 111122234455443 223333332
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
.+........ ..............-.|+||+++.........+...+.... ...+||.||...
T Consensus 206 ---fg~~~~~~~~-~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 ---FGHEKGAFTG-ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred ---cCCCCCCCCC-cccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1211100000 00000000111234568999999888777777777665421 145788888654
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.05 E-value=0.0085 Score=51.81 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 56 EDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 56 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++.+++.+.+.... ....++++.|..|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45555555554432 23458999999999999999999985
No 399
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.05 E-value=0.031 Score=51.63 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC--CCHHHHHHHHHHHhc--CCCC--CC-------CChH-
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED--SGKRQIMTKIINSVT--GGNH--GN-------LDPD- 142 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~ll~~l~--~~~~--~~-------~~~~- 142 (727)
..++|.|+.|+|||||.+.++.. .....+.++++-... ..... +...+. .+.. .. .+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcCHHH
Confidence 48999999999999999988863 222333333321110 01111 111111 1110 00 1111
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCC-CCCCEEEEecCchHHH
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVA 198 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~ 198 (727)
...-.+.+.+..++=++++|+-.. .|......+...+... ..+..||++|.+....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 223344555666777999999743 2443444444444321 2366788888776544
No 400
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.04 E-value=0.026 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+|+|.|++|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 401
>PRK13695 putative NTPase; Provisional
Probab=96.02 E-value=0.011 Score=54.86 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++|+|++|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 402
>PRK06547 hypothetical protein; Provisional
Probab=96.00 E-value=0.009 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....+|+|.|++|+||||+|+.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 403
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.00 E-value=0.039 Score=56.58 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=39.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhc----CCceEEEEecCCCCHHHHHHHHHHHh
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEH----FELKIWICVSEDSGKRQIMTKIINSV 131 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ll~~l 131 (727)
...++.|+|++|+|||+++.+++........ -..++|++..+.++...+. +++..+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 4579999999999999999999874322211 1468899988766665543 444444
No 404
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0096 Score=54.87 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|.|.|++|+||||+|++++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 405
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.97 E-value=0.052 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..|+|++|+|||+|+..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999874
No 406
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96 E-value=0.059 Score=49.69 Aligned_cols=107 Identities=17% Similarity=-0.002 Sum_probs=56.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhCCc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPD-RLQKVLRDSLNGK 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 155 (727)
.+++|.|+.|+|||||++.++.-. ....+.+++.-.. +. ..... ...+.. ...-.+.+.+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~---i~---------~~~q~-~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGIT---PV---------YKPQY-IDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEE---EE---------EEccc-CCCCHHHHHHHHHHHHHhcC
Confidence 489999999999999999888631 1222322221100 00 00000 002222 2333455566667
Q ss_pred eEEEEEcCCCCC-ChhhHHHHHHhhcCC--CCCCEEEEecCchHHHH
Q 036466 156 RYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVAL 199 (727)
Q Consensus 156 ~~LlvlDd~~~~-~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~~ 199 (727)
+=++++|+-... +......+...+... ..+..||++|.+.....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 889999997432 433334444444321 12256777877765544
No 407
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.92 E-value=0.0055 Score=46.53 Aligned_cols=22 Identities=41% Similarity=0.595 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++|.|.+|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 408
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.13 Score=51.12 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC--
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG-- 134 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-- 134 (727)
.-+.|...+... .-++...++|+.|+||+++|.+++... -|...... ...+.....++
T Consensus 5 ~~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~l------------lC~~~~~~---c~~~~~~~HPD~~ 64 (290)
T PRK05917 5 AWEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLI------------LKETSPEA---AYKISQKIHPDIH 64 (290)
T ss_pred HHHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHH------------hCCCCccH---HHHHhcCCCCCEE
Confidence 345566666552 446789999999999999999988731 11100000 01111111000
Q ss_pred --CCC----CCChHHHHHHHHHHhC-----CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch
Q 036466 135 --NHG----NLDPDRLQKVLRDSLN-----GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN 195 (727)
Q Consensus 135 --~~~----~~~~~~~~~~l~~~l~-----~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~ 195 (727)
.+. ....++.. .+.+.+. +..=++|+|+++.......+.+...+-...+++.+|++|...
T Consensus 65 ~i~p~~~~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 65 EFSPQGKGRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred EEecCCCCCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 000 12233332 2223222 344588999999999889999999887766677766666653
No 409
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.91 E-value=0.021 Score=59.02 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
..++-+-|||..|.|||.|...+++....+.+-.. ..-....++-+.+.......... ..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~----------HFh~Fm~~vh~~l~~~~~~~~~l----~~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV----------HFHEFMLDVHSRLHQLRGQDDPL----PQVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccc----------cccHHHHHHHHHHHHHhCCCccH----HHHHHHHH
Confidence 45788999999999999999999985333211100 01122233323322111111222 34444555
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHhhcC-CCCCCEEEEecCc
Q 036466 154 GKRYLLVMDDVWNEDPRAWGELKSLLLG-GAEGSKILVTTRS 194 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~~~~~~~~~l~~-~~~~~~iliTsr~ 194 (727)
++..||.||+++-.|..+-.-+...+.. ...|..+|.||-.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 5667999999977765553333333322 2357756666643
No 410
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.90 E-value=0.058 Score=52.34 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
...++.|.|.+|+|||+++.+++.. ....-..++|++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC
Confidence 4579999999999999999999874 222334577887765
No 411
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.89 E-value=0.0065 Score=54.21 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
+|.+.|++|+||||+|+++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999885
No 412
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.86 E-value=0.048 Score=51.49 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhc--------CCceEEEEecCC
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEH--------FELKIWICVSED 117 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~--------f~~~~~~~~~~~ 117 (727)
++.|.|++|+|||+++.+++........ -..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 8999999999999999999985332221 235778877554
No 413
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.86 E-value=0.096 Score=51.15 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=82.2
Q ss_pred CCCccCCCCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC
Q 036466 39 REPTHSFVRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS 118 (727)
Q Consensus 39 ~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~ 118 (727)
..+..+....+.|+|-..-... ..++.... ..-+.+.++|.+|+|||+-+++++.. .+....+..+..+
T Consensus 62 ~~q~~~~~~~~~~l~tkt~r~~-~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~ 130 (297)
T COG2842 62 GVQAALEKLAPDFLETKTVRRI-FFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSY 130 (297)
T ss_pred CcccccccccccccccchhHhH-hhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhh
Confidence 3345555566778886664322 22332221 22348999999999999999999873 2233344555555
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 119 GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
+...+...++...... ...........+...+.+..-++++|+.+......++.+......
T Consensus 131 ~a~~~i~~i~~~~~~~--~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 131 TALVLILIICAAAFGA--TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 5666666666655433 233444555566666678888999999988887777777655443
No 414
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.44 Score=47.54 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCch-HHHHHHhhcCCCCceecCCCChhhHHHHHHH
Q 036466 154 GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSN-KVALIMATMRGTTGYNLQELPYKDCLSLFMK 226 (727)
Q Consensus 154 ~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~ 226 (727)
+++=++|||+++.+.....+.+...+-...+++.+|++|.+. .+...+. .....+.+.. +.++..+++..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~--SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK--SRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH--HcceeeeCCC-cHHHHHHHHHH
Confidence 345689999999999888999998887766667666666543 2322221 1236777766 66666666654
No 415
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.85 E-value=0.11 Score=58.75 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC---
Q 036466 59 EKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN--- 135 (727)
Q Consensus 59 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--- 135 (727)
..|...|-. +.=..-+++.|+|++|+|||||+.+++.. ....-..++|++..+.... ..+.+++...
T Consensus 46 ~~LD~lLg~---GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~l 115 (790)
T PRK09519 46 IALDVALGI---GGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSL 115 (790)
T ss_pred HHHHHhhcC---CCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHe
Confidence 445555641 11134679999999999999999888773 3334456789987766553 2555554321
Q ss_pred --CCCCChHHHHHHHHHHhCC-ceEEEEEcCCC
Q 036466 136 --HGNLDPDRLQKVLRDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 136 --~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 165 (727)
......+.....+.+..++ +.-+||+|.+.
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1223445555566665544 56789999984
No 416
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0025 Score=60.49 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=69.6
Q ss_pred hcCCCcceEEEecCCCccccccccCCCCcCcEEeccCC--ccccccCccccCCCCCCEeecCCCCCC--cccChhhcccc
Q 036466 426 ISKSKSLRVLVLTNSAIEVLPRKMGNLKQLRHLDLSGN--RKIKKLPNSICELQSLQTLNLGDCLEL--EELPKDIRYLV 501 (727)
Q Consensus 426 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~ 501 (727)
......|+.+++.+..++.+ ..+..+++|++|.++.| ...+.++..+.++|+|++|++++|++- +++ ..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhc
Confidence 33445666666666665543 34667889999999988 444455555667799999999987654 233 3566778
Q ss_pred cCceeEeccccccccc----ccCCCCCCCcEEecccc
Q 036466 502 SLRMFVVTTKQKSLLE----SGIGCLSSLRFLMISNC 534 (727)
Q Consensus 502 ~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~~ 534 (727)
+|..|++.+|..+... ..+.-+++|++|+-...
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8888888887665211 13445567777765544
No 417
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.85 E-value=0.017 Score=58.10 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCChHHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGN-----HGNLDPDRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~~~~~~l~ 149 (727)
.-+++-|+|++|+||||||..++. ..+..-...+|++.....+. ..+..++..- ..+...++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 346999999999999999999987 44445556789998766444 3333333210 01234455666666
Q ss_pred HHhCC-ceEEEEEcCCCC
Q 036466 150 DSLNG-KRYLLVMDDVWN 166 (727)
Q Consensus 150 ~~l~~-~~~LlvlDd~~~ 166 (727)
+.++. .--++|+|.|..
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 66654 345888999843
No 418
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.84 E-value=0.022 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++.|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 419
>PHA00729 NTP-binding motif containing protein
Probab=95.84 E-value=0.012 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
....++|+|.+|+||||||..++..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 420
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.83 E-value=0.081 Score=51.35 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=67.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhh-H---------------hcC-CceEEEE----------------ecCCC----
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRV-E---------------EHF-ELKIWIC----------------VSEDS---- 118 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~-~---------------~~f-~~~~~~~----------------~~~~~---- 118 (727)
-.+++|.|+.|+|||||.+.++.-... . ..+ ..+.|+. .+..+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 469999999999999999999872100 0 000 0111221 01110
Q ss_pred ----C--HHHHHHHHHHHhcCC-----CCCCCCh-HHHHHHHHHHhCCceEEEEEcCCCC----CChhhHHHHHHhhcCC
Q 036466 119 ----G--KRQIMTKIINSVTGG-----NHGNLDP-DRLQKVLRDSLNGKRYLLVMDDVWN----EDPRAWGELKSLLLGG 182 (727)
Q Consensus 119 ----~--~~~~~~~ll~~l~~~-----~~~~~~~-~~~~~~l~~~l~~~~~LlvlDd~~~----~~~~~~~~~~~~l~~~ 182 (727)
+ ..+...+.++.++.. .....+. +.....+.+.+..++=++++|+--. ..+.+..++...+..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~- 186 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR- 186 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-
Confidence 1 122444555555422 2222333 3345667778888888999998522 222233333333332
Q ss_pred CCCCEEEEecCchHHHHH
Q 036466 183 AEGSKILVTTRSNKVALI 200 (727)
Q Consensus 183 ~~~~~iliTsr~~~~~~~ 200 (727)
..|..||+++.+...+..
T Consensus 187 ~~~~tvv~vlHDlN~A~r 204 (258)
T COG1120 187 EKGLTVVMVLHDLNLAAR 204 (258)
T ss_pred hcCCEEEEEecCHHHHHH
Confidence 246678999988876654
No 421
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.83 E-value=0.051 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.+|+|.|++|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987765
No 422
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.038 Score=51.40 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc--CCCC---CC----------CCh
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT--GGNH---GN----------LDP 141 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~---~~----------~~~ 141 (727)
.+++|.|+.|+|||||++.++-. .....+.++++-........-.....+.+. .+.. .. .+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 48999999999999999998852 122334333321110000000011111111 0000 01 111
Q ss_pred -HHHHHHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCC--CCCCEEEEecCchHHHH
Q 036466 142 -DRLQKVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG--AEGSKILVTTRSNKVAL 199 (727)
Q Consensus 142 -~~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~~ 199 (727)
+...-.+.+.+..++=++++|+-.. .|......+...+... ..+..+|++|.+.....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1222334556667788999999744 3444444454544432 12566888887765543
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.81 E-value=0.024 Score=54.39 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
++++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999864
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.15 Score=57.48 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
.++++++|+.|+||||++.+++...........+..++..... ...+-++...+.++.+.....+..++.+.+.+. ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 4799999999999999999999853222222345565544322 233445555555554333334566666666543 33
Q ss_pred ceEEEEEcCCCC
Q 036466 155 KRYLLVMDDVWN 166 (727)
Q Consensus 155 ~~~LlvlDd~~~ 166 (727)
+ =+|++|-...
T Consensus 264 ~-D~VLIDTAGR 274 (767)
T PRK14723 264 K-HLVLIDTVGM 274 (767)
T ss_pred C-CEEEEeCCCC
Confidence 3 3777888753
No 425
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.80 E-value=0.023 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+++|.|.+|+||||+|++++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999984
No 426
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.75 E-value=0.0057 Score=51.28 Aligned_cols=21 Identities=52% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 036466 79 IPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~ 99 (727)
|.|+|++|+|||++|+.++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998874
No 427
>PRK06762 hypothetical protein; Provisional
Probab=95.73 E-value=0.0078 Score=55.29 Aligned_cols=24 Identities=42% Similarity=0.529 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++++|+|++|+||||+|+++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 428
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.73 E-value=0.0043 Score=52.56 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcchhhHhcC
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQRVEEHF 106 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~~~~~~f 106 (727)
|.|+|.+|+|||++|+.++. .....|
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--E
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCce
Confidence 78999999999999999998 344444
No 429
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.73 E-value=0.029 Score=60.95 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=75.3
Q ss_pred CceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 49 SDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 49 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
..++|+...++.+...+.... .....|.|+|.+|+||+++|+.+..... ..-...+.++|.... .+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~v~v~c~~~~--~~~~~~~- 209 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIA----PSDITVLLLGESGTGKEVLARALHQLSD--RKDKRFVAINCAAIP--ENLLESE- 209 (445)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhCC--cCCCCeEEEECCCCC--hHHHHHH-
Confidence 358999999988888776543 1223577999999999999998886321 111123355665432 2222222
Q ss_pred HHhcCCCCCCCC--hHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 129 NSVTGGNHGNLD--PDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 129 ~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
+++....... .......+. ....-.|+||+++.........+...+.... ...+||.||...
T Consensus 210 --lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 210 --LFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred --hcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 2221110000 000000011 1234468899999988777777777775421 145888888654
No 430
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.24 Score=54.52 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=94.2
Q ss_pred eecchhHHHHHHHHhcCCCCC---CCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 52 IGRYEDGEKIIELLTQTSDGE---SETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 52 vGr~~~~~~l~~~l~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
.+++..+..+.+.+...-... -....++.++|.+|+||||+++.++. +..-|+ +=++|. +++
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h~---~evdc~----------el~ 468 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLHL---LEVDCY----------ELV 468 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCce---EeccHH----------HHh
Confidence 356676777777775542211 12356899999999999999999987 333332 111221 111
Q ss_pred HHhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC--------ChhhHHHHHHhhc-----CCCCCCEEEEecCc-
Q 036466 129 NSVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE--------DPRAWGELKSLLL-----GGAEGSKILVTTRS- 194 (727)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------~~~~~~~~~~~l~-----~~~~~~~iliTsr~- 194 (727)
. .........+...+.+.-...+.+|++-+++-. +..-...+...+. ...++..++.|+.+
T Consensus 469 ~-----~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 469 A-----ESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI 543 (953)
T ss_pred h-----cccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc
Confidence 1 112233334445555555557778877776331 1111111222222 12345555555543
Q ss_pred hHHHHHHhhcCCCCceecCCCChhhHHHHHHHhhccCCCCCChhHHHHHHHHHHHcCCch
Q 036466 195 NKVALIMATMRGTTGYNLQELPYKDCLSLFMKCAFKVGQEKHPNLVKIGEKIVEKCRGIP 254 (727)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 254 (727)
+.+...... ...+.+.++-++++|-.++|+-+...... ......+.+++.|.|.-
T Consensus 544 ~~lp~~i~~-~f~~ei~~~~lse~qRl~iLq~y~~~~~~----n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 544 EDLPADIQS-LFLHEIEVPALSEEQRLEILQWYLNHLPL----NQDVNLKQLARKTSGFS 598 (953)
T ss_pred ccCCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHhcccc----chHHHHHHHHHhcCCCC
Confidence 222222221 12377999999999999999987632211 11223456666666643
No 431
>PF13245 AAA_19: Part of AAA domain
Probab=95.68 E-value=0.02 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++++|.|++|.|||+++.+....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999665555553
No 432
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.68 E-value=0.0036 Score=62.21 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=62.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGK 155 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~ 155 (727)
.+-+.++|++|+|||++++.+..... ...| .+..+.++...+... ++.++..-. ....-. ...--.++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~-~q~~ie~~l----~k~~~~-----~~gP~~~k 100 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQ-LQKIIESKL----EKRRGR-----VYGPPGGK 100 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHH-HHHCCCTTE----CECTTE-----EEEEESSS
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHH-HHHHHhhcE----EcCCCC-----CCCCCCCc
Confidence 35789999999999999998876311 1111 123445554433333 233222211 100000 00001357
Q ss_pred eEEEEEcCCCCCChhh------HHHHHHhhcCCC----C--------CCEEEEecCch----HHHHHHhhcCCCCceecC
Q 036466 156 RYLLVMDDVWNEDPRA------WGELKSLLLGGA----E--------GSKILVTTRSN----KVALIMATMRGTTGYNLQ 213 (727)
Q Consensus 156 ~~LlvlDd~~~~~~~~------~~~~~~~l~~~~----~--------~~~iliTsr~~----~~~~~~~~~~~~~~~~l~ 213 (727)
++++++||+.-..... .+.++..+..++ . ...++-+.... .+.. +..+....+.+.
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~--R~~r~f~i~~~~ 178 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISP--RFLRHFNILNIP 178 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHH--HHHTTEEEEE--
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCCh--HHhhheEEEEec
Confidence 8999999996543322 333444443221 1 22233332211 1111 122334667777
Q ss_pred CCChhhHHHHHHHhh
Q 036466 214 ELPYKDCLSLFMKCA 228 (727)
Q Consensus 214 ~l~~~~~~~l~~~~~ 228 (727)
..+.+.-..+|....
T Consensus 179 ~p~~~sl~~If~~il 193 (272)
T PF12775_consen 179 YPSDESLNTIFSSIL 193 (272)
T ss_dssp --TCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 777777777766543
No 433
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.66 E-value=0.015 Score=64.57 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMT 125 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 125 (727)
..-..++|.++.++.|...+... +.+.++|++|+||||+|+.++.. .....++.++|... ...+...+++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~ 97 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIR 97 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHH
Confidence 34466899999999998877652 36999999999999999998874 22334566778665 4446677777
Q ss_pred HHHHHhc
Q 036466 126 KIINSVT 132 (727)
Q Consensus 126 ~ll~~l~ 132 (727)
.++.+++
T Consensus 98 ~v~~~~G 104 (637)
T PRK13765 98 TVPAGKG 104 (637)
T ss_pred HHHHhcC
Confidence 7777664
No 434
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.091 Score=59.89 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=73.8
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC--CHHHHHHHHHHHhc
Q 036466 55 YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS--GKRQIMTKIINSVT 132 (727)
Q Consensus 55 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~ll~~l~ 132 (727)
....++|.+++.. ..+++|.|++|+||||-+-+++.+... ...+.+ .+.+.. ....+...++.+++
T Consensus 52 ~~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I--~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 52 TAVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKI--GCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred HHHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeE--EecCchHHHHHHHHHHHHHHhC
Confidence 3556667777754 459999999999999999888874221 112222 333333 34567888888885
Q ss_pred CCCC------------CC-------CChHHHHHHHH-HHhCCceEEEEEcCCCCCChh---hHHHHHHhhcCCCCCCEEE
Q 036466 133 GGNH------------GN-------LDPDRLQKVLR-DSLNGKRYLLVMDDVWNEDPR---AWGELKSLLLGGAEGSKIL 189 (727)
Q Consensus 133 ~~~~------------~~-------~~~~~~~~~l~-~~l~~~~~LlvlDd~~~~~~~---~~~~~~~~l~~~~~~~~il 189 (727)
...- .. .....+...++ +.+=.+--.+|+|++++-... .+..+...+....+.-|||
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 3200 00 01223333333 111233458999999875321 1111222222334458999
Q ss_pred EecCchHHHH
Q 036466 190 VTTRSNKVAL 199 (727)
Q Consensus 190 iTsr~~~~~~ 199 (727)
|+|-.-+...
T Consensus 200 imSATld~~r 209 (845)
T COG1643 200 IMSATLDAER 209 (845)
T ss_pred EEecccCHHH
Confidence 9997654443
No 435
>PRK14527 adenylate kinase; Provisional
Probab=95.66 E-value=0.012 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+..+++|.|++|+||||+|+.++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988863
No 436
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.65 E-value=0.16 Score=53.43 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
++.++.++|++|+||||++.+++.. .+..-..+..+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~--l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY--YQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEcCcc
Confidence 4689999999999999999999974 333322455565543
No 437
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.65 E-value=0.11 Score=57.85 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-..++|+|++|+|||||++-+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.63 E-value=0.075 Score=54.10 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHHHHHhcCC---CCCCCCh-HHHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKIINSVTGG---NHGNLDP-DRLQKVLR 149 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~ll~~l~~~---~~~~~~~-~~~~~~l~ 149 (727)
+..++++.|++|+||||++.+++.. ....-..+..++...... ..+-+.......+.+ .....++ ....+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999984 333323444555432211 111122233333211 1111222 22334444
Q ss_pred HHhCCceEEEEEcCCCCC
Q 036466 150 DSLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 150 ~~l~~~~~LlvlDd~~~~ 167 (727)
......-=++|+|-....
T Consensus 191 ~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 444444458888988543
No 439
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.61 E-value=0.011 Score=56.46 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++..+++|.|++|+|||||++.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999863
No 440
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.59 E-value=0.035 Score=59.55 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=36.2
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 57 DGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 57 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
-+..|.+.|...- ..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 79 Gi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 79 GFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred CcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 3445666553321 34569999999999999999999874 322224577887643
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.057 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..|.|.|++|+|||||.+-++-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998885
No 442
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.59 E-value=0.13 Score=55.40 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=74.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCH--HHHHHHHHHHhcCC------------CCCCCC-
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGK--RQIMTKIINSVTGG------------NHGNLD- 140 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~ll~~l~~~------------~~~~~~- 140 (727)
..+|+|+|..|+||||=+-++.+. .-|...-.+-|.+...+ ..+.+.+..+++.. +....+
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~e----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYE----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHh----cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 569999999999999766555541 22211114455555443 35677777777421 001110
Q ss_pred ---hHHHHHHHHHHhC----CceEEEEEcCCCCCCh--hhHHHHHHhhcCCCCCCEEEEecCchHHHHHHhhcCCCCcee
Q 036466 141 ---PDRLQKVLRDSLN----GKRYLLVMDDVWNEDP--RAWGELKSLLLGGAEGSKILVTTRSNKVALIMATMRGTTGYN 211 (727)
Q Consensus 141 ---~~~~~~~l~~~l~----~~~~LlvlDd~~~~~~--~~~~~~~~~l~~~~~~~~iliTsr~~~~~~~~~~~~~~~~~~ 211 (727)
...-.-.+++.|+ .+--+||+|++++-.. ..+..+..........-|+||||-.-+........+....+.
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~ 526 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFT 526 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceee
Confidence 0011123444443 3456899999977532 122223333333445789999998876666655554334444
Q ss_pred cCC
Q 036466 212 LQE 214 (727)
Q Consensus 212 l~~ 214 (727)
+++
T Consensus 527 IpG 529 (1042)
T KOG0924|consen 527 IPG 529 (1042)
T ss_pred ecC
Confidence 544
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.58 E-value=0.11 Score=49.93 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCce-------------EEEEecCCCCHHHHHHHHHHHhcCCCCCCCChH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELK-------------IWICVSEDSGKRQIMTKIINSVTGGNHGNLDPD 142 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~-------------~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 142 (727)
.++++|.|+.|.||||+.+.+...... .+-... ++.......+..+-...+.. +..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~----------e~~ 99 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV----------ELS 99 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcCceEEeccceEEEEecCccccccccchHHH----------HHH
Confidence 468899999999999999988763111 111111 12222221111111111111 111
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCCCCh-hh----HHHHHHhhcCCCCCCEEEEecCchHHHHHH
Q 036466 143 RLQKVLRDSLNGKRYLLVMDDVWNEDP-RA----WGELKSLLLGGAEGSKILVTTRSNKVALIM 201 (727)
Q Consensus 143 ~~~~~l~~~l~~~~~LlvlDd~~~~~~-~~----~~~~~~~l~~~~~~~~iliTsr~~~~~~~~ 201 (727)
++...+.. ..++-|+++|++..... .+ ...+...+... .++.+|++|...++....
T Consensus 100 ~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 100 ETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22222222 24689999999854321 11 12334444433 578899999998876644
No 444
>PRK15453 phosphoribulokinase; Provisional
Probab=95.56 E-value=0.078 Score=51.97 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC--CHHHHHHHH--HHHh--cCCC--CCCCChHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS--GKRQIMTKI--INSV--TGGN--HGNLDPDRLQ 145 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~l--l~~l--~~~~--~~~~~~~~~~ 145 (727)
.+..+|+|.|.+|+||||+++.+.. .++..-....+++..... +-.+.-..+ ...- .-.. +...+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3467999999999999999999886 333222223444433322 222221211 1111 1112 3445666666
Q ss_pred HHHHHHhC
Q 036466 146 KVLRDSLN 153 (727)
Q Consensus 146 ~~l~~~l~ 153 (727)
+.++++..
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 66666554
No 445
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.56 E-value=0.1 Score=51.56 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc--CCCCC-----CCChHHHHHH
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT--GGNHG-----NLDPDRLQKV 147 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~-----~~~~~~~~~~ 147 (727)
....++|.|++|+||||+.+.++.. .. ...+.+++.-..-. ..+...++..... ..... -.+.-.....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~-~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVG-IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEee-cchhHHHHHHHhcccccccccccccccccchHHHH
Confidence 3568999999999999999999973 22 22233333211100 0011122222211 11100 0010111222
Q ss_pred HHHHhC-CceEEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchHHH
Q 036466 148 LRDSLN-GKRYLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVA 198 (727)
Q Consensus 148 l~~~l~-~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~ 198 (727)
+...+. -.+=++++|+... ...+..+...+. .|..+|+||.+....
T Consensus 186 ~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 333333 4788999999843 233444444443 477899999876553
No 446
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.55 E-value=0.025 Score=52.49 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 447
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.54 E-value=0.011 Score=56.91 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|+|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988763
No 448
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.52 E-value=0.019 Score=51.45 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=29.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 55 YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 55 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.+.+++|.+++.. +++++.|.+|+|||||+..+...
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 4567778888743 58999999999999999988874
No 449
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.51 E-value=0.055 Score=53.54 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCC-------CCCChHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNH-------GNLDPDRLQK 146 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~~~~~ 146 (727)
.+..++.|.|.+|+|||||+..+.. ...... .++.+.- ...+..+ .+.++..+.+.. --.+...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~-~~~VI~g-D~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV-PCAVIEG-DQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC-CEEEECC-CcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4578999999999999999999887 333333 2222221 1112221 122333321100 0123334445
Q ss_pred HHHHHhCCceEEEEEcCCCC
Q 036466 147 VLRDSLNGKRYLLVMDDVWN 166 (727)
Q Consensus 147 ~l~~~l~~~~~LlvlDd~~~ 166 (727)
.+..+.....-++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444456788999854
No 450
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.51 E-value=0.094 Score=48.35 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=67.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC---CCHHHHHHHHHHHh-----cCC-CCCCCChH----
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED---SGKRQIMTKIINSV-----TGG-NHGNLDPD---- 142 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~ll~~l-----~~~-~~~~~~~~---- 142 (727)
...|.|+|..|-||||.|-.++. +..++--.+..+-.-.+ .+....+..+ ..+ +.. .+...+.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 35899999999999999988777 44444334444443332 2333444332 111 010 11111111
Q ss_pred ---HHHHHHHHHhCC-ceEEEEEcCCCCC---ChhhHHHHHHhhcCCCCCCEEEEecCchHH
Q 036466 143 ---RLQKVLRDSLNG-KRYLLVMDDVWNE---DPRAWGELKSLLLGGAEGSKILVTTRSNKV 197 (727)
Q Consensus 143 ---~~~~~l~~~l~~-~~~LlvlDd~~~~---~~~~~~~~~~~l~~~~~~~~iliTsr~~~~ 197 (727)
...+..++.+.+ +-=++|||++-.. .....+++.+.+....++.-||+|=|...-
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 122233334433 4459999998332 223456677777777778899999998643
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.50 E-value=0.04 Score=57.10 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCCce
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNGKR 156 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 156 (727)
..++|.|++|+||||+.+.+... ........++. +... .+..... ...+........+.....+.++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp--~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDP--IEYVHRN-KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCC--hhhhccC-ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 58999999999999999988763 33333333332 2111 1111100 00010011112222345667788888899
Q ss_pred EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEecCchH
Q 036466 157 YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTTRSNK 196 (727)
Q Consensus 157 ~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~ 196 (727)
=+|++|++.+.+ .+....... ..|..++.|....+
T Consensus 197 d~i~vgEird~~--~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 197 DVILIGEMRDLE--TVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred CEEEEeCCCCHH--HHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999995432 333222221 23555666665443
No 452
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.49 E-value=0.058 Score=59.93 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCCHHHHHHHHHHHhcCCCCC-------CCChHHHHHH
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSGKRQIMTKIINSVTGGNHG-------NLDPDRLQKV 147 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~~~~~~ 147 (727)
.++++|+|.+|.||||+++++......... -...+.+......-...+.+.+-..+...... ......+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 358999999999999999998874222111 12344544444333333333333222110000 0111111111
Q ss_pred HHHHhC--------Cce---EEEEEcCCCCCChhhHHHHHHhhcCCCCCCEEEEec
Q 036466 148 LRDSLN--------GKR---YLLVMDDVWNEDPRAWGELKSLLLGGAEGSKILVTT 192 (727)
Q Consensus 148 l~~~l~--------~~~---~LlvlDd~~~~~~~~~~~~~~~l~~~~~~~~iliTs 192 (727)
+..... +.+ =++|+|++--.+......+...++ +++|+|+.=
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvG 299 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLG 299 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEec
Confidence 111101 112 289999986666555555555544 578877754
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.062 Score=48.72 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhCCc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGGNHGNLDP-DRLQKVLRDSLNGK 155 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~~~~~l~~~l~~~ 155 (727)
.+++|.|+.|+|||||++.+.... ....+.+++.-....... ..+....+..... .+. +...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ--LSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEee--CCHHHHHHHHHHHHHhcC
Confidence 589999999999999999988732 233444444322111100 0111111111000 222 22333455566667
Q ss_pred eEEEEEcCCCCC-ChhhHHHHHHhhcCC-CCCCEEEEecCchHHHHH
Q 036466 156 RYLLVMDDVWNE-DPRAWGELKSLLLGG-AEGSKILVTTRSNKVALI 200 (727)
Q Consensus 156 ~~LlvlDd~~~~-~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~~~ 200 (727)
+=++++|+.... |......+...+... ..+..++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999998543 433444444444321 124668888877655443
No 454
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.46 E-value=0.04 Score=53.47 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC--HHHHHHHHHHHh----cCCC--CCCCChHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG--KRQIMTKIINSV----TGGN--HGNLDPDRLQKVLR 149 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ll~~l----~~~~--~~~~~~~~~~~~l~ 149 (727)
+|+|.|.+|+||||+++++... ++..-..+..++...... -.+.-+.+.... .-.. +...+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 4899999999999999988873 333222334444332222 112222222211 1112 34556666667776
Q ss_pred HHhCCc
Q 036466 150 DSLNGK 155 (727)
Q Consensus 150 ~~l~~~ 155 (727)
.+..++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 666554
No 455
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.091 Score=55.25 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=46.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhC
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLN 153 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~ 153 (727)
...++++.|+.|+||||++.+++...........+.++...... ...+-+..+.+.++.+.....+..++...+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 35799999999999999999888742222222334444433321 22222333444443332222333344333333 33
Q ss_pred CceEEEEEcCCCC
Q 036466 154 GKRYLLVMDDVWN 166 (727)
Q Consensus 154 ~~~~LlvlDd~~~ 166 (727)
+ .-++++|....
T Consensus 269 ~-~d~VLIDTaGr 280 (420)
T PRK14721 269 G-KHMVLIDTVGM 280 (420)
T ss_pred C-CCEEEecCCCC
Confidence 3 34566777643
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.45 E-value=0.036 Score=55.19 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHH
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKII 128 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll 128 (727)
+.-++++|+|.+|+|||+++.+++. ........++|++..+. ..++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4467999999999999999999998 45555777899988763 444444443
No 457
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.43 E-value=0.079 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++|.|+.|+|||||.+.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999988863
No 458
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.41 E-value=0.047 Score=58.58 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 58 GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 58 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
+..|.+.|...- ..-.++.|.|++|+|||||+.+++.. ....-..++|++..+
T Consensus 66 i~~LD~~LgGGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGL----VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCc----cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 344555553211 23569999999999999999999884 322234567887643
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.40 E-value=0.045 Score=54.04 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 036466 79 IPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~ 99 (727)
|++.|.+|+||||+|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999974
No 460
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.40 E-value=0.05 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.|+|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999999984
No 461
>PRK04040 adenylate kinase; Provisional
Probab=95.39 E-value=0.012 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999998873
No 462
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.38 E-value=0.48 Score=42.11 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++|+|++|+|||||.+.++.
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 699999999999999999997
No 463
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.37 E-value=0.67 Score=41.36 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHhcCCC-----CCCC-ChHHHHHHHHHHhCCceEEEEEcCC-CCCChhhHHHHHHhhcC--CCCCCEEE
Q 036466 119 GKRQIMTKIINSVTGGN-----HGNL-DPDRLQKVLRDSLNGKRYLLVMDDV-WNEDPRAWGELKSLLLG--GAEGSKIL 189 (727)
Q Consensus 119 ~~~~~~~~ll~~l~~~~-----~~~~-~~~~~~~~l~~~l~~~~~LlvlDd~-~~~~~~~~~~~~~~l~~--~~~~~~il 189 (727)
+..+..+.++.+.+... +... .-++..-.+.+.+...|-+++-|+- .+.|...-..+.+.+.. ...|..+|
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 44455677777775321 1122 2344556778888899989998875 22344455555555532 34678788
Q ss_pred EecCchHHHHHHhh
Q 036466 190 VTTRSNKVALIMAT 203 (727)
Q Consensus 190 iTsr~~~~~~~~~~ 203 (727)
+.|.++.++..|..
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 88888888877644
No 464
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.11 Score=53.93 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
...+-+.+.|++|.|||.|+++++.
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHh
Confidence 4567888999999999999999998
No 465
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.32 E-value=0.093 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999984
No 466
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.30 E-value=0.039 Score=52.42 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCC-CHHHHHHHHH
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDS-GKRQIMTKII 128 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ll 128 (727)
.++|.|.+|+|||+|+.++++.. .-+.++|+-+++.. ...++.+++.
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~ 64 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELK 64 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHh
Confidence 68999999999999999998743 23445788776543 3444555553
No 467
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.28 E-value=0.085 Score=45.87 Aligned_cols=37 Identities=14% Similarity=0.342 Sum_probs=14.0
Q ss_pred hhcCCCcceEEEecCCCcccccc-ccCCCCcCcEEeccC
Q 036466 425 CISKSKSLRVLVLTNSAIEVLPR-KMGNLKQLRHLDLSG 462 (727)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~ 462 (727)
+|..|++|+.+.+.. .+..++. .|..+.+|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 455555666666553 2333322 244444555555543
No 468
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.27 E-value=0.12 Score=58.51 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=33.6
Q ss_pred HHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCCCC-CCEEEEecCchHHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGGAE-GSKILVTTRSNKVA 198 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~~~-~~~iliTsr~~~~~ 198 (727)
=.+.+.+-.+|=++++|+.-.. |......+.+.+..... .+.|+||-|...+.
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 3455677788999999998443 44445556666655433 55666776665443
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.23 Score=47.24 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
-.+++|.|+.|+|||||++.++-.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999988864
No 470
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.23 E-value=0.17 Score=49.67 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhh-Hhc--CC--ceEEEEec----CCCCHHHHH--------------HHHHHHhcC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRV-EEH--FE--LKIWICVS----EDSGKRQIM--------------TKIINSVTG 133 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~--f~--~~~~~~~~----~~~~~~~~~--------------~~ll~~l~~ 133 (727)
.+++|.|+.|+|||||++.++..... .+. ++ .+.|+.-. ...++.+.+ .+++..++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 58999999999999999998863211 111 11 22233211 111232222 122222221
Q ss_pred CC-----CCCCChHH-HHHHHHHHhCCceEEEEEcCCCCC-ChhhHHHHHHhhcCC--CCCCEEEEecCchHHHH
Q 036466 134 GN-----HGNLDPDR-LQKVLRDSLNGKRYLLVMDDVWNE-DPRAWGELKSLLLGG--AEGSKILVTTRSNKVAL 199 (727)
Q Consensus 134 ~~-----~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~~~~~l~~~--~~~~~iliTsr~~~~~~ 199 (727)
.. ....+..+ ..-.+...+..++=++++|+--.. |...-..+...+... ..+..||++|.+.....
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11 11122222 223455566677889999997432 433444444444332 23566888888766544
No 471
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.22 E-value=0.028 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.+..+++|.|.+|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 472
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.22 E-value=0.059 Score=56.23 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecC
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSE 116 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~ 116 (727)
++++|.|.||+|||.||-.++............++++...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 4799999999999999999998431144455566766654
No 473
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.27 Score=43.75 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.+++|+|.+|+|||||...+..+
T Consensus 33 eVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcc
Confidence 49999999999999999887763
No 474
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.20 E-value=0.034 Score=61.96 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=52.3
Q ss_pred CCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 47 RPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 47 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
....++|.++.++.+...+... +.+.++|++|+||||+++.++.... ...|..++|+... ..+..+++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCC-CCCchHHHHH
Confidence 3456899999999888888652 2577999999999999999997321 2233334444333 2355666777
Q ss_pred HHHHhc
Q 036466 127 IINSVT 132 (727)
Q Consensus 127 ll~~l~ 132 (727)
++.+++
T Consensus 86 v~~~~g 91 (608)
T TIGR00764 86 VPAGEG 91 (608)
T ss_pred HHHhhc
Confidence 777764
No 475
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.03 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 74 ETVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 74 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
++..+|.++|.+|+||||+|.++...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988873
No 476
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.20 E-value=0.037 Score=52.58 Aligned_cols=21 Identities=38% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 036466 77 SVIPIVGIGGLGKTALAKLLY 97 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~ 97 (727)
++++|+|+.|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.19 E-value=0.14 Score=56.57 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhc-CCceEEEEecCCCCHHHHHHHHHHHhcCC--
Q 036466 58 GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEH-FELKIWICVSEDSGKRQIMTKIINSVTGG-- 134 (727)
Q Consensus 58 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~ll~~l~~~-- 134 (727)
+..|.+.+...- ..-+++.|.|.+|+|||+++.+++.. ...+ -..++|++.... ..++.+.+.. ++-.
T Consensus 17 I~~LD~~l~GG~----p~Gs~~li~G~pGsGKT~l~~qf~~~--~~~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~ 87 (509)
T PRK09302 17 IEGFDDITHGGL----PKGRPTLVSGTAGTGKTLFALQFLVN--GIKRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQ 87 (509)
T ss_pred chhHHHhhcCCC----CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHH
Confidence 344665554311 34579999999999999999999873 2223 356788887663 4444444332 2200
Q ss_pred ---------------C------CCCCChHHHHHHHHHHhCC-ceEEEEEcCCC
Q 036466 135 ---------------N------HGNLDPDRLQKVLRDSLNG-KRYLLVMDDVW 165 (727)
Q Consensus 135 ---------------~------~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 165 (727)
. ....+.+.+...+.+.... ++-.+|+|.+.
T Consensus 88 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls 140 (509)
T PRK09302 88 KLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIE 140 (509)
T ss_pred HHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHH
Confidence 0 0112345556666665543 45679999984
No 478
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.17 E-value=0.038 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.+|+|++|.|||+++..+...
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 7999999999999888777764
No 479
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.013 Score=51.24 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhc
Q 036466 78 VIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVT 132 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~ 132 (727)
+|.|.|++|+||||+|+.++.+.-.. +++ .-.+++++++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~vs------aG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LVS------AGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------eee------ccHHHHHHHHHcC
Confidence 58899999999999999998742111 222 2357778877764
No 480
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.14 E-value=0.015 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 481
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.14 E-value=0.09 Score=58.29 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.++.+|+|.+|+||||++.++...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988874
No 482
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.13 E-value=0.021 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcch
Q 036466 79 IPIVGIGGLGKTALAKLLYNDQ 100 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~~ 100 (727)
+.|+|.+|+||||++++++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999843
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.018 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
...++|+|++|+|||||++++..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999984
No 484
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.11 E-value=0.2 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
-.+++|.|+.|+|||||++.++-.
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998863
No 485
>PRK03839 putative kinase; Provisional
Probab=95.07 E-value=0.016 Score=54.01 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 036466 78 VIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 78 ~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
.|+|.|++|+||||+++.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.12 Score=55.44 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhCC
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSED-SGKRQIMTKIINSVTGGNHGNLDPDRLQKVLRDSLNG 154 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~ 154 (727)
.+++++.|+.|+||||++.+++.....+.....+..++.... ....+-++.+.+..+.......+..+....+. .+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hccC
Confidence 479999999999999999999974332222223555554432 12233344444444332211122222222222 2333
Q ss_pred ceEEEEEcCCCC
Q 036466 155 KRYLLVMDDVWN 166 (727)
Q Consensus 155 ~~~LlvlDd~~~ 166 (727)
+ -.+++|....
T Consensus 335 ~-d~VLIDTaGr 345 (484)
T PRK06995 335 K-HIVLIDTIGM 345 (484)
T ss_pred C-CeEEeCCCCc
Confidence 3 4777888743
No 487
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.06 E-value=0.066 Score=53.08 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=52.2
Q ss_pred chhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHHHhcCC
Q 036466 55 YEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIINSVTGG 134 (727)
Q Consensus 55 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 134 (727)
+..++.|.+++.. ....++|.|+.|+||||+++.+... ....-..++.+.......... ..+....
T Consensus 66 ~~~~~~l~~~~~~-------~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~ 131 (264)
T cd01129 66 PENLEIFRKLLEK-------PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVN 131 (264)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeC
Confidence 3444555555533 2348999999999999999988763 221111233332111111100 1111111
Q ss_pred CCCCCChHHHHHHHHHHhCCceEEEEEcCCCCC
Q 036466 135 NHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNE 167 (727)
Q Consensus 135 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 167 (727)
........+.++..++..+=.|+++++.+.
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCH
Confidence 111123556777788888889999999554
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.06 E-value=0.14 Score=56.48 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHH
Q 036466 58 GEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTK 126 (727)
Q Consensus 58 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 126 (727)
++.|.+.+...- ..-.++.|.|.+|+|||+++.+++.. ....-..++|++.... ..++.+.
T Consensus 259 i~~lD~~l~GG~----~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~ 319 (509)
T PRK09302 259 VPDLDEMLGGGF----FRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRN 319 (509)
T ss_pred cHHHHHhhcCCC----CCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHH
Confidence 445666553211 33568999999999999999999874 3344467888877653 4444433
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.05 E-value=0.019 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhc
Q 036466 76 VSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 76 ~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
.++++|.|++|+||||+++.++.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 490
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.05 E-value=0.08 Score=53.99 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 036466 79 IPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 79 v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+++.|.+|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999874
No 491
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.05 E-value=0.18 Score=47.82 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHhCCceEEEEEcCCCC-CChhhHHHHHHhhcCC-CCCCEEEEecCchHHHH
Q 036466 146 KVLRDSLNGKRYLLVMDDVWN-EDPRAWGELKSLLLGG-AEGSKILVTTRSNKVAL 199 (727)
Q Consensus 146 ~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~~~~~l~~~-~~~~~iliTsr~~~~~~ 199 (727)
-.+.+.+..++=++++|+--. .|......+...+... ..+..||++|.+.....
T Consensus 113 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 445566667788999999743 3444444444444332 23566888888766544
No 492
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.05 E-value=0.099 Score=55.19 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcc-hhhHhcCCceEEEEecCCCCHHHHH
Q 036466 46 VRPSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYND-QRVEEHFELKIWICVSEDSGKRQIM 124 (727)
Q Consensus 46 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 124 (727)
.....++|+...++++.+.+.+... ....|.|+|.+|+||-.+|+.+... .+..++| +-++|.. -+.+++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~----s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PF---VavNcaA--ip~~l~ 208 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP----SDASVLITGESGTGKELVARAIHQASPRAKGPF---IAVNCAA--IPENLL 208 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCc---eeeeccc--CCHHHH
Confidence 3556799999999999999877652 2346999999999999999999874 2233343 2233333 234444
Q ss_pred HHHHHHh-cCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcC
Q 036466 125 TKIINSV-TGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLG 181 (727)
Q Consensus 125 ~~ll~~l-~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~ 181 (727)
+.-+..- .+...... . ...-.+. ....=-|+||++.++....-..+...+..
T Consensus 209 ESELFGhekGAFTGA~-~-~r~G~fE---~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe 261 (464)
T COG2204 209 ESELFGHEKGAFTGAI-T-RRIGRFE---QANGGTLFLDEIGEMPLELQVKLLRVLQE 261 (464)
T ss_pred HHHhhcccccCcCCcc-c-ccCccee---EcCCceEEeeccccCCHHHHHHHHHHHHc
Confidence 4322211 01100000 0 0000010 11344788999999887777788888765
No 493
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.02 E-value=0.24 Score=46.88 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCceEEEEEcCC----CCCChhhHHHHHHhhcCCCCCCEEEEecCchHHHH
Q 036466 144 LQKVLRDSLNGKRYLLVMDDV----WNEDPRAWGELKSLLLGGAEGSKILVTTRSNKVAL 199 (727)
Q Consensus 144 ~~~~l~~~l~~~~~LlvlDd~----~~~~~~~~~~~~~~l~~~~~~~~iliTsr~~~~~~ 199 (727)
....+.+++.-.|=++++|+= |-.....+++++..+.....-+.++||-.-.++..
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHh
Confidence 335566677777889999985 33345667777777776543444445544444433
No 494
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.22 Score=46.11 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhc
Q 036466 48 PSDIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 48 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
-.-++|-...++.+.=.+ .+.++.++.|++|+||||+.+.+-+
T Consensus 13 l~~yYg~~~aL~~i~l~i--------~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 13 LNLYYGDKHALKDINLDI--------PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeEEECchhhhccCceec--------cCCceEEEECCCCcCHHHHHHHHHh
Confidence 345778666555544222 3567999999999999999998775
No 495
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.01 E-value=0.32 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
..++|.|+.|+|||||++.++-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 496
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.00 E-value=0.076 Score=57.94 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=72.6
Q ss_pred ceeecchhHHHHHHHHhcCCCCCCCCeEEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCCHHHHHHHHHH
Q 036466 50 DIIGRYEDGEKIIELLTQTSDGESETVSVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSGKRQIMTKIIN 129 (727)
Q Consensus 50 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ll~ 129 (727)
.++|....+..+.+.+.... .....+.|+|.+|+||+++|+.+.... ...-...+.++|.... ...+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGK~~lA~~ih~~s--~~~~~~~~~i~c~~~~--~~~~~~--- 212 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIA----LSQASVLISGESGTGKELIARAIHYNS--RRAKGPFIKVNCAALP--ESLLES--- 212 (457)
T ss_pred ceecccHHHhHHHHHHHHHc----CCCcEEEEEcCCCccHHHHHHHHHHhC--CCCCCCeEEEECCCCC--HHHHHH---
Confidence 47787777777777665543 223468899999999999999887632 1111223345555432 222222
Q ss_pred HhcCCCCCCCChHHHHHHHHHHhCCceEEEEEcCCCCCChhhHHHHHHhhcCCC-----------CCCEEEEecCch
Q 036466 130 SVTGGNHGNLDPDRLQKVLRDSLNGKRYLLVMDDVWNEDPRAWGELKSLLLGGA-----------EGSKILVTTRSN 195 (727)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~~~~~l~~~~-----------~~~~iliTsr~~ 195 (727)
.+.+.......... ............-.|+||+++.........+...+.... ...+||.||...
T Consensus 213 ~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 213 ELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred HhcCCCCCCCCCCC-CCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 22221111000000 000000011233478999999988766667777665321 135888888643
No 497
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.99 E-value=0.022 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHhcc
Q 036466 75 TVSVIPIVGIGGLGKTALAKLLYND 99 (727)
Q Consensus 75 ~~~~v~i~G~~GiGKTtLa~~~~~~ 99 (727)
+.++++|.|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999999874
No 498
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.98 E-value=0.15 Score=51.62 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhhHhcCCceEEEEecCCCC-HHHHHHHH
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRVEEHFELKIWICVSEDSG-KRQIMTKI 127 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l 127 (727)
..++|.|.+|+|||+|+.++++. ..-+.++|+-+++..+ ..+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 37999999999999999998873 2335678888876543 33444443
No 499
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.98 E-value=0.091 Score=51.50 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcchhh--HhcCCceEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCC-----h
Q 036466 77 SVIPIVGIGGLGKTALAKLLYNDQRV--EEHFELKIWICVSEDS-GKRQIMTKIINSVTG-------GNHGNLD-----P 141 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~~~~~~~~~-~~~~~~~~ll~~l~~-------~~~~~~~-----~ 141 (727)
..++|+|.+|+|||+|+.++++.... ++.-+..+|+-+++.. +..++..++...-.. ....+.. .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 36899999999999999998874321 1223566788776654 444555555443110 0011111 1
Q ss_pred HHHHHHHHHHh---CCceEEEEEcCCC
Q 036466 142 DRLQKVLRDSL---NGKRYLLVMDDVW 165 (727)
Q Consensus 142 ~~~~~~l~~~l---~~~~~LlvlDd~~ 165 (727)
....-.+.+++ .++++|+++||+-
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11122233333 2678999999983
No 500
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.34 Score=44.01 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhc
Q 036466 77 SVIPIVGIGGLGKTALAKLLYN 98 (727)
Q Consensus 77 ~~v~i~G~~GiGKTtLa~~~~~ 98 (727)
..+.|.|+.|+|||||.|.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999998886
Done!